Multiple sequence alignment - TraesCS7D01G183300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G183300 chr7D 100.000 1606 0 0 899 2504 136587193 136585588 0.000000e+00 2966.0
1 TraesCS7D01G183300 chr7D 100.000 576 0 0 1 576 136588091 136587516 0.000000e+00 1064.0
2 TraesCS7D01G183300 chr7D 92.130 216 15 2 231 445 397098266 397098480 1.130000e-78 303.0
3 TraesCS7D01G183300 chr7D 92.488 213 15 1 234 445 548196942 548197154 1.130000e-78 303.0
4 TraesCS7D01G183300 chr7D 88.806 134 13 1 1778 1909 34373470 34373337 1.990000e-36 163.0
5 TraesCS7D01G183300 chr7B 91.137 1636 86 28 899 2504 100028008 100026402 0.000000e+00 2163.0
6 TraesCS7D01G183300 chr7B 90.789 76 7 0 1993 2068 100027342 100027267 4.410000e-18 102.0
7 TraesCS7D01G183300 chr7A 92.735 1170 52 12 946 2110 136346973 136345832 0.000000e+00 1659.0
8 TraesCS7D01G183300 chr7A 88.268 358 34 4 2149 2504 136345639 136345288 2.980000e-114 422.0
9 TraesCS7D01G183300 chr7A 93.671 79 5 0 1993 2071 136346360 136346282 4.380000e-23 119.0
10 TraesCS7D01G183300 chr3D 93.897 213 11 2 234 445 236298310 236298521 1.120000e-83 320.0
11 TraesCS7D01G183300 chr3D 91.743 218 16 2 234 450 429641614 429641830 4.050000e-78 302.0
12 TraesCS7D01G183300 chr5D 93.056 216 14 1 231 445 220494653 220494438 5.200000e-82 315.0
13 TraesCS7D01G183300 chr5D 78.351 194 28 8 4 187 357000083 357000272 2.040000e-21 113.0
14 TraesCS7D01G183300 chr5D 75.319 235 45 8 1 225 447190911 447191142 1.580000e-17 100.0
15 TraesCS7D01G183300 chr6B 92.593 216 15 1 231 445 197400422 197400637 2.420000e-80 309.0
16 TraesCS7D01G183300 chr6B 89.630 135 12 2 1777 1909 641305586 641305452 1.190000e-38 171.0
17 TraesCS7D01G183300 chr4D 92.958 213 14 1 234 445 200876203 200876415 2.420000e-80 309.0
18 TraesCS7D01G183300 chr6D 92.488 213 15 1 234 445 199208879 199209091 1.130000e-78 303.0
19 TraesCS7D01G183300 chr1D 92.130 216 15 2 230 444 194434013 194433799 1.130000e-78 303.0
20 TraesCS7D01G183300 chr4A 88.406 138 13 2 1775 1909 514080008 514080145 1.990000e-36 163.0
21 TraesCS7D01G183300 chr4A 88.060 134 13 2 1778 1909 703265857 703265989 3.330000e-34 156.0
22 TraesCS7D01G183300 chr4A 78.241 216 35 7 9 214 60737057 60737270 7.270000e-26 128.0
23 TraesCS7D01G183300 chr2D 88.806 134 11 2 1778 1909 249890193 249890062 7.170000e-36 161.0
24 TraesCS7D01G183300 chr2D 88.060 134 13 2 1778 1909 163017683 163017815 3.330000e-34 156.0
25 TraesCS7D01G183300 chr2D 75.410 244 46 8 1 235 106968776 106969014 3.410000e-19 106.0
26 TraesCS7D01G183300 chr5B 88.148 135 14 1 1777 1909 403708732 403708598 2.580000e-35 159.0
27 TraesCS7D01G183300 chr5B 77.570 214 35 8 7 210 78736359 78736149 1.570000e-22 117.0
28 TraesCS7D01G183300 chr5A 77.824 239 37 13 7 235 415159702 415159470 1.560000e-27 134.0
29 TraesCS7D01G183300 chr5A 85.507 69 8 2 148 214 512645280 512645348 1.240000e-08 71.3
30 TraesCS7D01G183300 chr3B 78.431 204 24 13 4 193 668111465 668111662 5.660000e-22 115.0
31 TraesCS7D01G183300 chr1B 79.839 124 15 9 80 199 133810206 133810323 5.740000e-12 82.4
32 TraesCS7D01G183300 chr4B 92.857 42 2 1 99 139 599652336 599652295 2.690000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G183300 chr7D 136585588 136588091 2503 True 2015.000000 2966 100.000 1 2504 2 chr7D.!!$R2 2503
1 TraesCS7D01G183300 chr7B 100026402 100028008 1606 True 1132.500000 2163 90.963 899 2504 2 chr7B.!!$R1 1605
2 TraesCS7D01G183300 chr7A 136345288 136346973 1685 True 733.333333 1659 91.558 946 2504 3 chr7A.!!$R1 1558

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
563 564 0.034186 GATGACATGTGGGCCCAGAA 60.034 55.0 29.55 18.35 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1663 1666 1.281899 GCTAGTTCATCAGCGACACC 58.718 55.0 0.0 0.0 0.0 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 8.887036 TTAAAAGAATTGAAAGGAAAAGCTCC 57.113 30.769 0.00 0.00 45.81 4.70
47 48 6.332735 GGAAAAGCTCCTTAAGACATTTGT 57.667 37.500 3.36 0.00 41.61 2.83
48 49 6.749139 GGAAAAGCTCCTTAAGACATTTGTT 58.251 36.000 3.36 0.00 41.61 2.83
49 50 6.642540 GGAAAAGCTCCTTAAGACATTTGTTG 59.357 38.462 3.36 0.00 41.61 3.33
50 51 6.959639 AAAGCTCCTTAAGACATTTGTTGA 57.040 33.333 3.36 0.00 0.00 3.18
51 52 5.948992 AGCTCCTTAAGACATTTGTTGAC 57.051 39.130 3.36 0.00 0.00 3.18
52 53 4.762251 AGCTCCTTAAGACATTTGTTGACC 59.238 41.667 3.36 0.00 0.00 4.02
53 54 4.082733 GCTCCTTAAGACATTTGTTGACCC 60.083 45.833 3.36 0.00 0.00 4.46
54 55 4.069304 TCCTTAAGACATTTGTTGACCCG 58.931 43.478 3.36 0.00 0.00 5.28
55 56 3.190535 CCTTAAGACATTTGTTGACCCGG 59.809 47.826 3.36 0.00 0.00 5.73
56 57 2.358322 AAGACATTTGTTGACCCGGT 57.642 45.000 0.00 0.00 0.00 5.28
57 58 2.358322 AGACATTTGTTGACCCGGTT 57.642 45.000 0.00 0.00 0.00 4.44
58 59 3.495434 AGACATTTGTTGACCCGGTTA 57.505 42.857 0.00 0.00 0.00 2.85
59 60 3.822940 AGACATTTGTTGACCCGGTTAA 58.177 40.909 0.00 0.00 0.00 2.01
60 61 4.208746 AGACATTTGTTGACCCGGTTAAA 58.791 39.130 0.00 0.00 0.00 1.52
61 62 4.645588 AGACATTTGTTGACCCGGTTAAAA 59.354 37.500 0.00 0.00 0.00 1.52
62 63 5.303333 AGACATTTGTTGACCCGGTTAAAAT 59.697 36.000 0.00 0.00 0.00 1.82
63 64 5.534407 ACATTTGTTGACCCGGTTAAAATC 58.466 37.500 0.00 0.00 0.00 2.17
64 65 5.069251 ACATTTGTTGACCCGGTTAAAATCA 59.931 36.000 0.00 0.00 0.00 2.57
65 66 4.839668 TTGTTGACCCGGTTAAAATCAG 57.160 40.909 0.00 0.00 0.00 2.90
66 67 3.822940 TGTTGACCCGGTTAAAATCAGT 58.177 40.909 0.00 0.00 0.00 3.41
67 68 4.208746 TGTTGACCCGGTTAAAATCAGTT 58.791 39.130 0.00 0.00 0.00 3.16
68 69 4.036971 TGTTGACCCGGTTAAAATCAGTTG 59.963 41.667 0.00 0.00 0.00 3.16
69 70 4.088056 TGACCCGGTTAAAATCAGTTGA 57.912 40.909 0.00 0.00 0.00 3.18
70 71 3.816523 TGACCCGGTTAAAATCAGTTGAC 59.183 43.478 0.00 0.00 0.00 3.18
71 72 3.816523 GACCCGGTTAAAATCAGTTGACA 59.183 43.478 0.00 0.00 0.00 3.58
72 73 3.566742 ACCCGGTTAAAATCAGTTGACAC 59.433 43.478 0.00 0.00 0.00 3.67
73 74 3.566322 CCCGGTTAAAATCAGTTGACACA 59.434 43.478 0.00 0.00 0.00 3.72
74 75 4.036971 CCCGGTTAAAATCAGTTGACACAA 59.963 41.667 0.00 0.00 0.00 3.33
75 76 5.278758 CCCGGTTAAAATCAGTTGACACAAT 60.279 40.000 0.00 0.00 0.00 2.71
76 77 6.212955 CCGGTTAAAATCAGTTGACACAATT 58.787 36.000 0.00 0.00 0.00 2.32
77 78 7.364200 CCGGTTAAAATCAGTTGACACAATTA 58.636 34.615 0.00 0.00 0.00 1.40
78 79 8.026607 CCGGTTAAAATCAGTTGACACAATTAT 58.973 33.333 0.00 0.00 0.00 1.28
104 105 8.563123 AAACTAAAGACCTCAATAAGCCTTAC 57.437 34.615 0.00 0.00 0.00 2.34
105 106 7.253905 ACTAAAGACCTCAATAAGCCTTACA 57.746 36.000 0.00 0.00 0.00 2.41
106 107 7.686434 ACTAAAGACCTCAATAAGCCTTACAA 58.314 34.615 0.00 0.00 0.00 2.41
107 108 8.161425 ACTAAAGACCTCAATAAGCCTTACAAA 58.839 33.333 0.00 0.00 0.00 2.83
108 109 9.178758 CTAAAGACCTCAATAAGCCTTACAAAT 57.821 33.333 0.00 0.00 0.00 2.32
109 110 8.422577 AAAGACCTCAATAAGCCTTACAAATT 57.577 30.769 0.00 0.00 0.00 1.82
110 111 9.528489 AAAGACCTCAATAAGCCTTACAAATTA 57.472 29.630 0.00 0.00 0.00 1.40
111 112 8.738645 AGACCTCAATAAGCCTTACAAATTAG 57.261 34.615 0.00 0.00 0.00 1.73
112 113 7.775561 AGACCTCAATAAGCCTTACAAATTAGG 59.224 37.037 0.00 0.00 34.54 2.69
113 114 7.639378 ACCTCAATAAGCCTTACAAATTAGGA 58.361 34.615 0.00 0.00 33.13 2.94
114 115 8.113462 ACCTCAATAAGCCTTACAAATTAGGAA 58.887 33.333 0.00 0.00 33.13 3.36
115 116 8.966868 CCTCAATAAGCCTTACAAATTAGGAAA 58.033 33.333 0.00 0.00 33.13 3.13
116 117 9.788960 CTCAATAAGCCTTACAAATTAGGAAAC 57.211 33.333 0.00 0.00 33.13 2.78
117 118 9.303116 TCAATAAGCCTTACAAATTAGGAAACA 57.697 29.630 0.00 0.00 33.13 2.83
121 122 8.879427 AAGCCTTACAAATTAGGAAACATAGT 57.121 30.769 0.00 0.00 33.13 2.12
122 123 8.281212 AGCCTTACAAATTAGGAAACATAGTG 57.719 34.615 0.00 0.00 33.13 2.74
123 124 7.888546 AGCCTTACAAATTAGGAAACATAGTGT 59.111 33.333 0.00 0.00 33.13 3.55
124 125 9.169592 GCCTTACAAATTAGGAAACATAGTGTA 57.830 33.333 0.00 0.00 33.13 2.90
168 169 8.593492 AAATAAGCTTTGAGAAATTGTTGACC 57.407 30.769 3.20 0.00 0.00 4.02
169 170 4.590850 AGCTTTGAGAAATTGTTGACCC 57.409 40.909 0.00 0.00 0.00 4.46
170 171 3.004734 AGCTTTGAGAAATTGTTGACCCG 59.995 43.478 0.00 0.00 0.00 5.28
171 172 3.004315 GCTTTGAGAAATTGTTGACCCGA 59.996 43.478 0.00 0.00 0.00 5.14
172 173 4.321230 GCTTTGAGAAATTGTTGACCCGAT 60.321 41.667 0.00 0.00 0.00 4.18
173 174 5.772521 CTTTGAGAAATTGTTGACCCGATT 58.227 37.500 0.00 0.00 0.00 3.34
174 175 6.569610 GCTTTGAGAAATTGTTGACCCGATTA 60.570 38.462 0.00 0.00 0.00 1.75
175 176 6.885952 TTGAGAAATTGTTGACCCGATTAA 57.114 33.333 0.00 0.00 0.00 1.40
176 177 6.885952 TGAGAAATTGTTGACCCGATTAAA 57.114 33.333 0.00 0.00 0.00 1.52
177 178 7.278461 TGAGAAATTGTTGACCCGATTAAAA 57.722 32.000 0.00 0.00 0.00 1.52
178 179 7.891561 TGAGAAATTGTTGACCCGATTAAAAT 58.108 30.769 0.00 0.00 0.00 1.82
179 180 8.026607 TGAGAAATTGTTGACCCGATTAAAATC 58.973 33.333 0.00 0.00 0.00 2.17
202 203 9.793252 AATCGGATGACTCAATTTTAAATGAAG 57.207 29.630 0.00 0.00 0.00 3.02
203 204 8.560355 TCGGATGACTCAATTTTAAATGAAGA 57.440 30.769 6.58 0.00 0.00 2.87
204 205 8.668353 TCGGATGACTCAATTTTAAATGAAGAG 58.332 33.333 11.08 11.08 0.00 2.85
205 206 7.430502 CGGATGACTCAATTTTAAATGAAGAGC 59.569 37.037 12.03 7.88 0.00 4.09
206 207 8.465201 GGATGACTCAATTTTAAATGAAGAGCT 58.535 33.333 12.03 0.00 0.00 4.09
207 208 9.500864 GATGACTCAATTTTAAATGAAGAGCTC 57.499 33.333 5.27 5.27 0.00 4.09
208 209 8.394971 TGACTCAATTTTAAATGAAGAGCTCA 57.605 30.769 17.77 0.00 38.81 4.26
209 210 8.849168 TGACTCAATTTTAAATGAAGAGCTCAA 58.151 29.630 17.77 0.82 37.67 3.02
210 211 9.122613 GACTCAATTTTAAATGAAGAGCTCAAC 57.877 33.333 17.77 9.78 37.67 3.18
211 212 8.854117 ACTCAATTTTAAATGAAGAGCTCAACT 58.146 29.630 17.77 0.00 37.67 3.16
221 222 8.614469 AATGAAGAGCTCAACTAAATATAGGC 57.386 34.615 17.77 0.00 37.67 3.93
222 223 7.366847 TGAAGAGCTCAACTAAATATAGGCT 57.633 36.000 17.77 0.00 33.15 4.58
223 224 7.796054 TGAAGAGCTCAACTAAATATAGGCTT 58.204 34.615 17.77 0.00 33.15 4.35
224 225 8.267894 TGAAGAGCTCAACTAAATATAGGCTTT 58.732 33.333 17.77 0.00 33.15 3.51
225 226 9.114952 GAAGAGCTCAACTAAATATAGGCTTTT 57.885 33.333 17.77 0.00 33.15 2.27
226 227 9.467796 AAGAGCTCAACTAAATATAGGCTTTTT 57.532 29.630 17.77 0.00 33.15 1.94
242 243 7.756395 AGGCTTTTTAAAAACTACTACCTCC 57.244 36.000 9.31 1.30 0.00 4.30
243 244 7.292319 AGGCTTTTTAAAAACTACTACCTCCA 58.708 34.615 9.31 0.00 0.00 3.86
244 245 7.948447 AGGCTTTTTAAAAACTACTACCTCCAT 59.052 33.333 9.31 0.00 0.00 3.41
245 246 8.242053 GGCTTTTTAAAAACTACTACCTCCATC 58.758 37.037 9.31 0.00 0.00 3.51
246 247 9.011095 GCTTTTTAAAAACTACTACCTCCATCT 57.989 33.333 9.31 0.00 0.00 2.90
252 253 8.794335 AAAAACTACTACCTCCATCTCAATTC 57.206 34.615 0.00 0.00 0.00 2.17
253 254 7.496346 AAACTACTACCTCCATCTCAATTCA 57.504 36.000 0.00 0.00 0.00 2.57
254 255 6.472686 ACTACTACCTCCATCTCAATTCAC 57.527 41.667 0.00 0.00 0.00 3.18
255 256 5.958380 ACTACTACCTCCATCTCAATTCACA 59.042 40.000 0.00 0.00 0.00 3.58
256 257 5.762179 ACTACCTCCATCTCAATTCACAA 57.238 39.130 0.00 0.00 0.00 3.33
257 258 5.738909 ACTACCTCCATCTCAATTCACAAG 58.261 41.667 0.00 0.00 0.00 3.16
258 259 3.960571 ACCTCCATCTCAATTCACAAGG 58.039 45.455 0.00 0.00 0.00 3.61
259 260 2.686915 CCTCCATCTCAATTCACAAGGC 59.313 50.000 0.00 0.00 0.00 4.35
260 261 3.618351 CTCCATCTCAATTCACAAGGCT 58.382 45.455 0.00 0.00 0.00 4.58
261 262 4.015084 CTCCATCTCAATTCACAAGGCTT 58.985 43.478 0.00 0.00 0.00 4.35
262 263 3.760151 TCCATCTCAATTCACAAGGCTTG 59.240 43.478 25.06 25.06 0.00 4.01
263 264 3.508762 CATCTCAATTCACAAGGCTTGC 58.491 45.455 26.45 0.00 0.00 4.01
264 265 2.585330 TCTCAATTCACAAGGCTTGCA 58.415 42.857 26.45 11.18 0.00 4.08
265 266 2.294233 TCTCAATTCACAAGGCTTGCAC 59.706 45.455 26.45 0.00 0.00 4.57
266 267 1.001487 TCAATTCACAAGGCTTGCACG 60.001 47.619 26.45 15.29 0.00 5.34
267 268 1.032014 AATTCACAAGGCTTGCACGT 58.968 45.000 26.45 8.43 0.00 4.49
268 269 0.311790 ATTCACAAGGCTTGCACGTG 59.688 50.000 26.45 16.91 0.00 4.49
269 270 1.029408 TTCACAAGGCTTGCACGTGT 61.029 50.000 26.45 4.11 0.00 4.49
270 271 0.179070 TCACAAGGCTTGCACGTGTA 60.179 50.000 26.45 10.46 0.00 2.90
271 272 0.874390 CACAAGGCTTGCACGTGTAT 59.126 50.000 26.45 1.84 0.00 2.29
272 273 1.135972 CACAAGGCTTGCACGTGTATC 60.136 52.381 26.45 7.60 0.00 2.24
273 274 1.270839 ACAAGGCTTGCACGTGTATCT 60.271 47.619 26.45 8.01 0.00 1.98
274 275 2.028476 ACAAGGCTTGCACGTGTATCTA 60.028 45.455 26.45 0.00 0.00 1.98
275 276 2.586258 AGGCTTGCACGTGTATCTAG 57.414 50.000 18.38 8.43 0.00 2.43
276 277 1.137086 AGGCTTGCACGTGTATCTAGG 59.863 52.381 18.38 2.52 0.00 3.02
277 278 1.134788 GGCTTGCACGTGTATCTAGGT 60.135 52.381 18.38 0.00 0.00 3.08
278 279 2.194271 GCTTGCACGTGTATCTAGGTC 58.806 52.381 18.38 0.00 0.00 3.85
279 280 2.451132 CTTGCACGTGTATCTAGGTCG 58.549 52.381 18.38 0.00 0.00 4.79
280 281 1.456296 TGCACGTGTATCTAGGTCGT 58.544 50.000 18.38 0.00 35.12 4.34
281 282 1.399440 TGCACGTGTATCTAGGTCGTC 59.601 52.381 18.38 0.00 32.47 4.20
282 283 1.399440 GCACGTGTATCTAGGTCGTCA 59.601 52.381 18.38 0.00 32.47 4.35
283 284 2.159476 GCACGTGTATCTAGGTCGTCAA 60.159 50.000 18.38 0.00 32.47 3.18
284 285 3.488721 GCACGTGTATCTAGGTCGTCAAT 60.489 47.826 18.38 0.00 32.47 2.57
285 286 4.669318 CACGTGTATCTAGGTCGTCAATT 58.331 43.478 7.58 0.00 32.47 2.32
286 287 5.100259 CACGTGTATCTAGGTCGTCAATTT 58.900 41.667 7.58 0.00 32.47 1.82
287 288 6.260377 CACGTGTATCTAGGTCGTCAATTTA 58.740 40.000 7.58 0.00 32.47 1.40
288 289 6.748658 CACGTGTATCTAGGTCGTCAATTTAA 59.251 38.462 7.58 0.00 32.47 1.52
289 290 6.749118 ACGTGTATCTAGGTCGTCAATTTAAC 59.251 38.462 0.00 0.00 0.00 2.01
290 291 6.197842 CGTGTATCTAGGTCGTCAATTTAACC 59.802 42.308 0.00 0.00 0.00 2.85
291 292 7.263496 GTGTATCTAGGTCGTCAATTTAACCT 58.737 38.462 0.00 0.00 44.24 3.50
292 293 8.408601 GTGTATCTAGGTCGTCAATTTAACCTA 58.591 37.037 0.00 0.00 42.13 3.08
293 294 9.139734 TGTATCTAGGTCGTCAATTTAACCTAT 57.860 33.333 0.89 0.00 42.08 2.57
397 398 8.588290 ATGTATGCCTTTTATTAAGTTGGTCA 57.412 30.769 0.00 0.00 0.00 4.02
398 399 8.410673 TGTATGCCTTTTATTAAGTTGGTCAA 57.589 30.769 0.00 0.00 0.00 3.18
399 400 8.861086 TGTATGCCTTTTATTAAGTTGGTCAAA 58.139 29.630 0.00 0.00 0.00 2.69
400 401 9.869757 GTATGCCTTTTATTAAGTTGGTCAAAT 57.130 29.630 0.00 0.00 0.00 2.32
412 413 9.932207 TTAAGTTGGTCAAATTAACGATCTAGA 57.068 29.630 10.89 0.00 36.37 2.43
415 416 9.530633 AGTTGGTCAAATTAACGATCTAGATAC 57.469 33.333 4.89 0.00 0.00 2.24
416 417 9.309516 GTTGGTCAAATTAACGATCTAGATACA 57.690 33.333 4.89 0.00 0.00 2.29
417 418 8.867112 TGGTCAAATTAACGATCTAGATACAC 57.133 34.615 4.89 0.00 0.00 2.90
418 419 7.646526 TGGTCAAATTAACGATCTAGATACACG 59.353 37.037 4.89 7.96 0.00 4.49
419 420 7.646922 GGTCAAATTAACGATCTAGATACACGT 59.353 37.037 4.89 8.64 38.81 4.49
420 421 8.469902 GTCAAATTAACGATCTAGATACACGTG 58.530 37.037 15.48 15.48 37.28 4.49
421 422 6.988109 AATTAACGATCTAGATACACGTGC 57.012 37.500 17.22 0.00 37.28 5.34
422 423 5.488645 TTAACGATCTAGATACACGTGCA 57.511 39.130 17.22 2.06 37.28 4.57
423 424 4.365899 AACGATCTAGATACACGTGCAA 57.634 40.909 17.22 4.26 37.28 4.08
424 425 3.953766 ACGATCTAGATACACGTGCAAG 58.046 45.455 17.22 6.18 35.91 4.01
425 426 3.626217 ACGATCTAGATACACGTGCAAGA 59.374 43.478 17.22 11.49 35.91 3.02
426 427 3.969352 CGATCTAGATACACGTGCAAGAC 59.031 47.826 17.22 3.11 0.00 3.01
427 428 4.260825 CGATCTAGATACACGTGCAAGACT 60.261 45.833 17.22 10.57 0.00 3.24
428 429 5.583495 GATCTAGATACACGTGCAAGACTT 58.417 41.667 17.22 0.00 0.00 3.01
429 430 4.733850 TCTAGATACACGTGCAAGACTTG 58.266 43.478 17.22 11.02 0.00 3.16
430 431 3.386768 AGATACACGTGCAAGACTTGT 57.613 42.857 17.22 3.04 40.10 3.16
431 432 4.514781 AGATACACGTGCAAGACTTGTA 57.485 40.909 17.22 9.51 41.92 2.41
432 433 4.878439 AGATACACGTGCAAGACTTGTAA 58.122 39.130 17.22 3.08 41.28 2.41
433 434 5.294356 AGATACACGTGCAAGACTTGTAAA 58.706 37.500 17.22 0.63 41.28 2.01
434 435 3.668596 ACACGTGCAAGACTTGTAAAC 57.331 42.857 17.22 11.23 35.36 2.01
435 436 2.353579 ACACGTGCAAGACTTGTAAACC 59.646 45.455 17.22 0.31 35.36 3.27
436 437 1.595794 ACGTGCAAGACTTGTAAACCG 59.404 47.619 16.39 13.60 0.00 4.44
437 438 1.862201 CGTGCAAGACTTGTAAACCGA 59.138 47.619 16.39 0.00 0.00 4.69
438 439 2.096909 CGTGCAAGACTTGTAAACCGAG 60.097 50.000 16.39 0.00 0.00 4.63
439 440 3.128349 GTGCAAGACTTGTAAACCGAGA 58.872 45.455 16.39 0.00 0.00 4.04
440 441 3.746492 GTGCAAGACTTGTAAACCGAGAT 59.254 43.478 16.39 0.00 0.00 2.75
441 442 4.927425 GTGCAAGACTTGTAAACCGAGATA 59.073 41.667 16.39 0.00 0.00 1.98
442 443 5.062308 GTGCAAGACTTGTAAACCGAGATAG 59.938 44.000 16.39 0.00 0.00 2.08
443 444 5.047590 TGCAAGACTTGTAAACCGAGATAGA 60.048 40.000 16.39 0.00 0.00 1.98
444 445 5.517054 GCAAGACTTGTAAACCGAGATAGAG 59.483 44.000 16.39 0.00 0.00 2.43
445 446 6.622549 CAAGACTTGTAAACCGAGATAGAGT 58.377 40.000 7.05 0.00 0.00 3.24
446 447 7.627939 GCAAGACTTGTAAACCGAGATAGAGTA 60.628 40.741 16.39 0.00 0.00 2.59
447 448 7.556733 AGACTTGTAAACCGAGATAGAGTAG 57.443 40.000 0.00 0.00 0.00 2.57
448 449 7.337167 AGACTTGTAAACCGAGATAGAGTAGA 58.663 38.462 0.00 0.00 0.00 2.59
449 450 7.496591 AGACTTGTAAACCGAGATAGAGTAGAG 59.503 40.741 0.00 0.00 0.00 2.43
450 451 7.337167 ACTTGTAAACCGAGATAGAGTAGAGA 58.663 38.462 0.00 0.00 0.00 3.10
451 452 7.496591 ACTTGTAAACCGAGATAGAGTAGAGAG 59.503 40.741 0.00 0.00 0.00 3.20
452 453 5.759273 TGTAAACCGAGATAGAGTAGAGAGC 59.241 44.000 0.00 0.00 0.00 4.09
453 454 4.425180 AACCGAGATAGAGTAGAGAGCA 57.575 45.455 0.00 0.00 0.00 4.26
454 455 4.634012 ACCGAGATAGAGTAGAGAGCAT 57.366 45.455 0.00 0.00 0.00 3.79
455 456 5.748670 ACCGAGATAGAGTAGAGAGCATA 57.251 43.478 0.00 0.00 0.00 3.14
456 457 6.308015 ACCGAGATAGAGTAGAGAGCATAT 57.692 41.667 0.00 0.00 0.00 1.78
457 458 6.112734 ACCGAGATAGAGTAGAGAGCATATG 58.887 44.000 0.00 0.00 0.00 1.78
458 459 5.527214 CCGAGATAGAGTAGAGAGCATATGG 59.473 48.000 4.56 0.00 0.00 2.74
459 460 6.112734 CGAGATAGAGTAGAGAGCATATGGT 58.887 44.000 7.23 7.23 0.00 3.55
460 461 6.037062 CGAGATAGAGTAGAGAGCATATGGTG 59.963 46.154 13.10 0.00 0.00 4.17
461 462 6.789268 AGATAGAGTAGAGAGCATATGGTGT 58.211 40.000 13.10 8.45 0.00 4.16
462 463 7.237982 AGATAGAGTAGAGAGCATATGGTGTT 58.762 38.462 13.10 0.00 0.00 3.32
463 464 8.387039 AGATAGAGTAGAGAGCATATGGTGTTA 58.613 37.037 13.10 1.52 0.00 2.41
464 465 6.642707 AGAGTAGAGAGCATATGGTGTTAC 57.357 41.667 13.10 12.59 0.00 2.50
465 466 6.369629 AGAGTAGAGAGCATATGGTGTTACT 58.630 40.000 13.10 16.44 0.00 2.24
466 467 6.488683 AGAGTAGAGAGCATATGGTGTTACTC 59.511 42.308 25.79 25.79 34.20 2.59
467 468 6.369629 AGTAGAGAGCATATGGTGTTACTCT 58.630 40.000 20.90 20.90 37.21 3.24
468 469 7.519057 AGTAGAGAGCATATGGTGTTACTCTA 58.481 38.462 19.42 19.42 34.75 2.43
469 470 8.167392 AGTAGAGAGCATATGGTGTTACTCTAT 58.833 37.037 23.22 16.03 37.76 1.98
470 471 9.451002 GTAGAGAGCATATGGTGTTACTCTATA 57.549 37.037 23.22 15.30 37.76 1.31
471 472 8.941995 AGAGAGCATATGGTGTTACTCTATAA 57.058 34.615 13.10 0.00 34.75 0.98
472 473 9.368416 AGAGAGCATATGGTGTTACTCTATAAA 57.632 33.333 13.10 0.00 34.75 1.40
473 474 9.632807 GAGAGCATATGGTGTTACTCTATAAAG 57.367 37.037 13.10 0.00 34.75 1.85
474 475 8.589338 AGAGCATATGGTGTTACTCTATAAAGG 58.411 37.037 13.10 0.00 32.91 3.11
475 476 8.492415 AGCATATGGTGTTACTCTATAAAGGA 57.508 34.615 6.62 0.00 0.00 3.36
476 477 9.105844 AGCATATGGTGTTACTCTATAAAGGAT 57.894 33.333 6.62 0.00 0.00 3.24
477 478 9.155975 GCATATGGTGTTACTCTATAAAGGATG 57.844 37.037 4.56 0.00 0.00 3.51
478 479 9.155975 CATATGGTGTTACTCTATAAAGGATGC 57.844 37.037 0.00 0.00 0.00 3.91
479 480 5.925509 TGGTGTTACTCTATAAAGGATGCC 58.074 41.667 0.00 0.00 0.00 4.40
480 481 4.989168 GGTGTTACTCTATAAAGGATGCCG 59.011 45.833 0.00 0.00 0.00 5.69
481 482 4.448060 GTGTTACTCTATAAAGGATGCCGC 59.552 45.833 0.00 0.00 0.00 6.53
482 483 4.344102 TGTTACTCTATAAAGGATGCCGCT 59.656 41.667 0.00 0.00 0.00 5.52
483 484 3.669251 ACTCTATAAAGGATGCCGCTC 57.331 47.619 0.00 0.00 0.00 5.03
484 485 2.965831 ACTCTATAAAGGATGCCGCTCA 59.034 45.455 0.00 0.00 0.00 4.26
485 486 3.006323 ACTCTATAAAGGATGCCGCTCAG 59.994 47.826 0.00 0.00 0.00 3.35
486 487 2.300152 TCTATAAAGGATGCCGCTCAGG 59.700 50.000 0.00 0.00 44.97 3.86
487 488 0.839946 ATAAAGGATGCCGCTCAGGT 59.160 50.000 0.00 0.00 43.70 4.00
488 489 0.107703 TAAAGGATGCCGCTCAGGTG 60.108 55.000 0.00 0.00 43.70 4.00
489 490 2.826777 AAAGGATGCCGCTCAGGTGG 62.827 60.000 0.00 0.00 45.33 4.61
490 491 4.864334 GGATGCCGCTCAGGTGGG 62.864 72.222 0.00 0.00 42.95 4.61
496 497 4.767255 CGCTCAGGTGGGCTGGTC 62.767 72.222 0.00 0.00 0.00 4.02
497 498 3.640407 GCTCAGGTGGGCTGGTCA 61.640 66.667 0.00 0.00 0.00 4.02
498 499 2.667418 CTCAGGTGGGCTGGTCAG 59.333 66.667 0.00 0.00 0.00 3.51
508 509 2.667418 CTGGTCAGCTGGTGGGAG 59.333 66.667 15.13 0.00 0.00 4.30
509 510 3.618780 CTGGTCAGCTGGTGGGAGC 62.619 68.421 15.13 4.10 39.46 4.70
510 511 4.767255 GGTCAGCTGGTGGGAGCG 62.767 72.222 15.13 0.00 44.24 5.03
511 512 4.767255 GTCAGCTGGTGGGAGCGG 62.767 72.222 15.13 0.00 44.24 5.52
533 534 3.935993 CCGATGCGGGGAATAGATT 57.064 52.632 0.00 0.00 44.15 2.40
534 535 1.726853 CCGATGCGGGGAATAGATTC 58.273 55.000 0.00 0.00 44.15 2.52
535 536 1.350193 CGATGCGGGGAATAGATTCG 58.650 55.000 0.00 0.00 37.67 3.34
536 537 1.336887 CGATGCGGGGAATAGATTCGT 60.337 52.381 0.00 0.00 37.67 3.85
537 538 2.767505 GATGCGGGGAATAGATTCGTT 58.232 47.619 0.00 0.00 37.67 3.85
538 539 2.234300 TGCGGGGAATAGATTCGTTC 57.766 50.000 0.00 0.00 37.67 3.95
539 540 1.483004 TGCGGGGAATAGATTCGTTCA 59.517 47.619 7.01 0.00 37.67 3.18
540 541 2.104111 TGCGGGGAATAGATTCGTTCAT 59.896 45.455 7.01 0.00 37.67 2.57
541 542 3.139077 GCGGGGAATAGATTCGTTCATT 58.861 45.455 7.01 0.00 37.67 2.57
542 543 3.564225 GCGGGGAATAGATTCGTTCATTT 59.436 43.478 7.01 0.00 37.67 2.32
543 544 4.554723 GCGGGGAATAGATTCGTTCATTTG 60.555 45.833 7.01 0.00 37.67 2.32
544 545 4.024048 CGGGGAATAGATTCGTTCATTTGG 60.024 45.833 7.01 0.00 37.67 3.28
545 546 5.130350 GGGGAATAGATTCGTTCATTTGGA 58.870 41.667 7.01 0.00 37.67 3.53
546 547 5.770162 GGGGAATAGATTCGTTCATTTGGAT 59.230 40.000 7.01 0.00 37.67 3.41
547 548 6.294176 GGGGAATAGATTCGTTCATTTGGATG 60.294 42.308 7.01 0.00 37.67 3.51
548 549 6.486657 GGGAATAGATTCGTTCATTTGGATGA 59.513 38.462 7.01 0.00 37.79 2.92
549 550 7.355778 GGAATAGATTCGTTCATTTGGATGAC 58.644 38.462 7.01 0.00 38.52 3.06
550 551 7.012327 GGAATAGATTCGTTCATTTGGATGACA 59.988 37.037 7.01 0.00 38.52 3.58
551 552 8.455903 AATAGATTCGTTCATTTGGATGACAT 57.544 30.769 0.00 0.00 41.84 3.06
552 553 6.127810 AGATTCGTTCATTTGGATGACATG 57.872 37.500 0.00 0.00 41.84 3.21
553 554 5.649395 AGATTCGTTCATTTGGATGACATGT 59.351 36.000 0.00 0.00 41.84 3.21
554 555 4.683501 TCGTTCATTTGGATGACATGTG 57.316 40.909 1.15 0.00 41.84 3.21
555 556 3.439825 TCGTTCATTTGGATGACATGTGG 59.560 43.478 1.15 0.00 41.84 4.17
556 557 3.427909 CGTTCATTTGGATGACATGTGGG 60.428 47.826 1.15 0.00 41.84 4.61
557 558 2.101783 TCATTTGGATGACATGTGGGC 58.898 47.619 1.15 0.00 37.37 5.36
558 559 1.137479 CATTTGGATGACATGTGGGCC 59.863 52.381 1.15 0.00 35.16 5.80
559 560 0.614415 TTTGGATGACATGTGGGCCC 60.614 55.000 17.59 17.59 0.00 5.80
560 561 1.798087 TTGGATGACATGTGGGCCCA 61.798 55.000 24.45 24.45 0.00 5.36
561 562 1.454479 GGATGACATGTGGGCCCAG 60.454 63.158 29.55 17.45 0.00 4.45
562 563 1.609239 GATGACATGTGGGCCCAGA 59.391 57.895 29.55 27.78 0.00 3.86
563 564 0.034186 GATGACATGTGGGCCCAGAA 60.034 55.000 29.55 18.35 0.00 3.02
564 565 0.409092 ATGACATGTGGGCCCAGAAA 59.591 50.000 29.55 15.27 0.00 2.52
565 566 0.409092 TGACATGTGGGCCCAGAAAT 59.591 50.000 29.55 17.25 0.00 2.17
566 567 1.203162 TGACATGTGGGCCCAGAAATT 60.203 47.619 29.55 12.88 0.00 1.82
567 568 2.042297 TGACATGTGGGCCCAGAAATTA 59.958 45.455 29.55 10.68 0.00 1.40
568 569 2.689983 GACATGTGGGCCCAGAAATTAG 59.310 50.000 29.55 15.34 0.00 1.73
569 570 2.311542 ACATGTGGGCCCAGAAATTAGA 59.688 45.455 29.55 0.00 0.00 2.10
570 571 3.245586 ACATGTGGGCCCAGAAATTAGAA 60.246 43.478 29.55 2.40 0.00 2.10
571 572 2.802719 TGTGGGCCCAGAAATTAGAAC 58.197 47.619 29.55 10.08 0.00 3.01
572 573 2.109128 TGTGGGCCCAGAAATTAGAACA 59.891 45.455 29.55 13.08 0.00 3.18
573 574 2.492088 GTGGGCCCAGAAATTAGAACAC 59.508 50.000 29.55 4.20 0.00 3.32
574 575 2.378547 TGGGCCCAGAAATTAGAACACT 59.621 45.455 24.45 0.00 0.00 3.55
575 576 2.755103 GGGCCCAGAAATTAGAACACTG 59.245 50.000 19.95 0.00 0.00 3.66
979 980 0.446616 GGTCAAAATCCCGAGCGAAC 59.553 55.000 0.00 0.00 0.00 3.95
1301 1302 3.203716 CATCGAAACCCTAACCCTAAGC 58.796 50.000 0.00 0.00 0.00 3.09
1308 1309 1.227176 CTAACCCTAAGCGCGGTCC 60.227 63.158 12.91 0.00 0.00 4.46
1309 1310 2.639883 CTAACCCTAAGCGCGGTCCC 62.640 65.000 12.91 0.00 0.00 4.46
1458 1459 1.392853 GCTGACAAGATCAACTCGCTG 59.607 52.381 0.00 0.00 36.69 5.18
1596 1597 2.638480 TTGACTGGAGTTGTTCAGGG 57.362 50.000 0.00 0.00 35.47 4.45
1663 1666 2.967459 TGCAACTGTAACATTCTGCG 57.033 45.000 0.00 0.00 32.45 5.18
1786 1790 4.346418 CCTCATTAGCATTGTACTCCCTCT 59.654 45.833 0.00 0.00 0.00 3.69
1798 1802 6.037786 TGTACTCCCTCTGTTCACAAATAG 57.962 41.667 0.00 0.00 0.00 1.73
1886 1892 9.784680 AAACGTGTCTATATATATCCGATTCAC 57.215 33.333 0.00 3.07 0.00 3.18
1888 1894 9.828039 ACGTGTCTATATATATCCGATTCACTA 57.172 33.333 0.00 0.00 0.00 2.74
1953 1960 1.838112 TAGTGGGATTTTGCCTGCAG 58.162 50.000 6.78 6.78 0.00 4.41
1974 1981 2.693069 CCAAGAGTGCAGTTGTAGAGG 58.307 52.381 0.00 0.00 0.00 3.69
2029 2043 0.610232 GTCCCTGGTGCTCTGCATTT 60.610 55.000 0.00 0.00 41.91 2.32
2123 2303 7.506296 TTTGTTATATATATGCAGAGTCGCG 57.494 36.000 0.00 0.00 33.35 5.87
2143 2323 4.204573 CGCGTATGAACTAACTAGTCTTGC 59.795 45.833 0.00 0.00 34.99 4.01
2160 2340 0.963225 TGCTGGTCGCACACTAGTTA 59.037 50.000 0.00 0.00 45.47 2.24
2246 2433 7.042187 CCTCTTTAGCATTGTAGCAATCAGTAG 60.042 40.741 0.00 0.00 36.85 2.57
2249 2436 7.539712 TTAGCATTGTAGCAATCAGTAGTTC 57.460 36.000 0.00 0.00 36.85 3.01
2301 2495 6.431234 ACAATTCTCCTTGACCTTGTGTATTC 59.569 38.462 0.00 0.00 32.69 1.75
2302 2496 5.825593 TTCTCCTTGACCTTGTGTATTCT 57.174 39.130 0.00 0.00 0.00 2.40
2303 2497 5.407407 TCTCCTTGACCTTGTGTATTCTC 57.593 43.478 0.00 0.00 0.00 2.87
2315 2509 5.435686 TGTGTATTCTCCCATAGCAACTT 57.564 39.130 0.00 0.00 0.00 2.66
2335 2529 7.095017 GCAACTTAGACTTAGAACTTTCTGCAT 60.095 37.037 1.52 0.00 38.19 3.96
2372 2566 6.404734 CCTCTTTGTTTAGAATGTATGCCCAC 60.405 42.308 0.00 0.00 0.00 4.61
2394 2588 7.248437 CCACTTTTATTCCGACCTACAAATTC 58.752 38.462 0.00 0.00 0.00 2.17
2396 2590 7.120726 CACTTTTATTCCGACCTACAAATTCCT 59.879 37.037 0.00 0.00 0.00 3.36
2418 2613 6.157994 TCCTTTGCCTTCTATTGTATAGTGGT 59.842 38.462 0.00 0.00 0.00 4.16
2443 2638 6.795144 TTTTCCTTGCCATTGATGTCATAT 57.205 33.333 0.00 0.00 0.00 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 9.494271 GGAGCTTTTCCTTTCAATTCTTTTAAT 57.506 29.630 0.00 0.00 43.16 1.40
9 10 8.887036 GGAGCTTTTCCTTTCAATTCTTTTAA 57.113 30.769 0.00 0.00 43.16 1.52
25 26 7.379797 GTCAACAAATGTCTTAAGGAGCTTTTC 59.620 37.037 1.85 0.00 0.00 2.29
26 27 7.203218 GTCAACAAATGTCTTAAGGAGCTTTT 58.797 34.615 1.85 2.53 0.00 2.27
27 28 6.239036 GGTCAACAAATGTCTTAAGGAGCTTT 60.239 38.462 1.85 0.00 0.00 3.51
28 29 5.241728 GGTCAACAAATGTCTTAAGGAGCTT 59.758 40.000 1.85 0.00 0.00 3.74
29 30 4.762251 GGTCAACAAATGTCTTAAGGAGCT 59.238 41.667 1.85 0.00 0.00 4.09
30 31 4.082733 GGGTCAACAAATGTCTTAAGGAGC 60.083 45.833 1.85 0.00 0.00 4.70
31 32 4.154195 CGGGTCAACAAATGTCTTAAGGAG 59.846 45.833 1.85 0.00 0.00 3.69
32 33 4.069304 CGGGTCAACAAATGTCTTAAGGA 58.931 43.478 1.85 0.00 0.00 3.36
33 34 3.190535 CCGGGTCAACAAATGTCTTAAGG 59.809 47.826 1.85 0.00 0.00 2.69
34 35 3.818773 ACCGGGTCAACAAATGTCTTAAG 59.181 43.478 6.32 0.00 0.00 1.85
35 36 3.822940 ACCGGGTCAACAAATGTCTTAA 58.177 40.909 6.32 0.00 0.00 1.85
36 37 3.495434 ACCGGGTCAACAAATGTCTTA 57.505 42.857 6.32 0.00 0.00 2.10
37 38 2.358322 ACCGGGTCAACAAATGTCTT 57.642 45.000 6.32 0.00 0.00 3.01
38 39 2.358322 AACCGGGTCAACAAATGTCT 57.642 45.000 6.32 0.00 0.00 3.41
39 40 4.571372 TTTAACCGGGTCAACAAATGTC 57.429 40.909 6.32 0.00 0.00 3.06
40 41 5.069251 TGATTTTAACCGGGTCAACAAATGT 59.931 36.000 6.32 0.00 0.00 2.71
41 42 5.533482 TGATTTTAACCGGGTCAACAAATG 58.467 37.500 6.32 0.00 0.00 2.32
42 43 5.303333 ACTGATTTTAACCGGGTCAACAAAT 59.697 36.000 6.32 2.28 0.00 2.32
43 44 4.645588 ACTGATTTTAACCGGGTCAACAAA 59.354 37.500 6.32 0.00 0.00 2.83
44 45 4.208746 ACTGATTTTAACCGGGTCAACAA 58.791 39.130 6.32 0.00 0.00 2.83
45 46 3.822940 ACTGATTTTAACCGGGTCAACA 58.177 40.909 6.32 0.00 0.00 3.33
46 47 4.276431 TCAACTGATTTTAACCGGGTCAAC 59.724 41.667 6.32 0.00 0.00 3.18
47 48 4.276431 GTCAACTGATTTTAACCGGGTCAA 59.724 41.667 6.32 0.00 0.00 3.18
48 49 3.816523 GTCAACTGATTTTAACCGGGTCA 59.183 43.478 6.32 0.00 0.00 4.02
49 50 3.816523 TGTCAACTGATTTTAACCGGGTC 59.183 43.478 6.32 0.00 0.00 4.46
50 51 3.566742 GTGTCAACTGATTTTAACCGGGT 59.433 43.478 6.32 0.00 0.00 5.28
51 52 3.566322 TGTGTCAACTGATTTTAACCGGG 59.434 43.478 6.32 0.00 0.00 5.73
52 53 4.822036 TGTGTCAACTGATTTTAACCGG 57.178 40.909 0.00 0.00 0.00 5.28
53 54 8.964420 ATAATTGTGTCAACTGATTTTAACCG 57.036 30.769 0.00 0.00 0.00 4.44
78 79 9.662947 GTAAGGCTTATTGAGGTCTTTAGTTTA 57.337 33.333 10.65 0.00 0.00 2.01
79 80 8.161425 TGTAAGGCTTATTGAGGTCTTTAGTTT 58.839 33.333 10.65 0.00 0.00 2.66
80 81 7.686434 TGTAAGGCTTATTGAGGTCTTTAGTT 58.314 34.615 10.65 0.00 0.00 2.24
81 82 7.253905 TGTAAGGCTTATTGAGGTCTTTAGT 57.746 36.000 10.65 0.00 0.00 2.24
82 83 8.561738 TTTGTAAGGCTTATTGAGGTCTTTAG 57.438 34.615 10.65 0.00 0.00 1.85
83 84 9.528489 AATTTGTAAGGCTTATTGAGGTCTTTA 57.472 29.630 10.65 0.00 0.00 1.85
84 85 8.422577 AATTTGTAAGGCTTATTGAGGTCTTT 57.577 30.769 10.65 0.00 0.00 2.52
85 86 9.178758 CTAATTTGTAAGGCTTATTGAGGTCTT 57.821 33.333 10.65 0.40 0.00 3.01
86 87 7.775561 CCTAATTTGTAAGGCTTATTGAGGTCT 59.224 37.037 10.65 0.00 0.00 3.85
87 88 7.773690 TCCTAATTTGTAAGGCTTATTGAGGTC 59.226 37.037 10.65 0.00 32.55 3.85
88 89 7.639378 TCCTAATTTGTAAGGCTTATTGAGGT 58.361 34.615 10.65 0.00 32.55 3.85
89 90 8.519799 TTCCTAATTTGTAAGGCTTATTGAGG 57.480 34.615 10.65 11.11 32.55 3.86
90 91 9.788960 GTTTCCTAATTTGTAAGGCTTATTGAG 57.211 33.333 10.65 3.04 32.55 3.02
91 92 9.303116 TGTTTCCTAATTTGTAAGGCTTATTGA 57.697 29.630 10.65 0.00 32.55 2.57
95 96 9.969001 ACTATGTTTCCTAATTTGTAAGGCTTA 57.031 29.630 2.04 2.04 32.55 3.09
96 97 8.739972 CACTATGTTTCCTAATTTGTAAGGCTT 58.260 33.333 4.58 4.58 32.55 4.35
97 98 7.888546 ACACTATGTTTCCTAATTTGTAAGGCT 59.111 33.333 0.00 0.00 32.55 4.58
98 99 8.051901 ACACTATGTTTCCTAATTTGTAAGGC 57.948 34.615 0.00 0.00 32.55 4.35
142 143 9.691362 GGTCAACAATTTCTCAAAGCTTATTTA 57.309 29.630 0.00 0.00 0.00 1.40
143 144 7.657354 GGGTCAACAATTTCTCAAAGCTTATTT 59.343 33.333 0.00 0.00 0.00 1.40
144 145 7.154656 GGGTCAACAATTTCTCAAAGCTTATT 58.845 34.615 0.00 0.00 0.00 1.40
145 146 6.570378 CGGGTCAACAATTTCTCAAAGCTTAT 60.570 38.462 0.00 0.00 0.00 1.73
146 147 5.278266 CGGGTCAACAATTTCTCAAAGCTTA 60.278 40.000 0.00 0.00 0.00 3.09
147 148 4.499696 CGGGTCAACAATTTCTCAAAGCTT 60.500 41.667 0.00 0.00 0.00 3.74
148 149 3.004734 CGGGTCAACAATTTCTCAAAGCT 59.995 43.478 0.00 0.00 0.00 3.74
149 150 3.004315 TCGGGTCAACAATTTCTCAAAGC 59.996 43.478 0.00 0.00 0.00 3.51
150 151 4.829064 TCGGGTCAACAATTTCTCAAAG 57.171 40.909 0.00 0.00 0.00 2.77
151 152 5.782893 AATCGGGTCAACAATTTCTCAAA 57.217 34.783 0.00 0.00 0.00 2.69
152 153 6.885952 TTAATCGGGTCAACAATTTCTCAA 57.114 33.333 0.00 0.00 0.00 3.02
153 154 6.885952 TTTAATCGGGTCAACAATTTCTCA 57.114 33.333 0.00 0.00 0.00 3.27
154 155 8.394667 GATTTTAATCGGGTCAACAATTTCTC 57.605 34.615 0.00 0.00 0.00 2.87
176 177 9.793252 CTTCATTTAAAATTGAGTCATCCGATT 57.207 29.630 0.00 0.00 0.00 3.34
177 178 9.177608 TCTTCATTTAAAATTGAGTCATCCGAT 57.822 29.630 0.00 0.00 0.00 4.18
178 179 8.560355 TCTTCATTTAAAATTGAGTCATCCGA 57.440 30.769 0.00 0.00 0.00 4.55
179 180 7.430502 GCTCTTCATTTAAAATTGAGTCATCCG 59.569 37.037 0.00 0.00 0.00 4.18
180 181 8.465201 AGCTCTTCATTTAAAATTGAGTCATCC 58.535 33.333 0.00 0.00 0.00 3.51
181 182 9.500864 GAGCTCTTCATTTAAAATTGAGTCATC 57.499 33.333 6.43 0.00 0.00 2.92
182 183 9.017509 TGAGCTCTTCATTTAAAATTGAGTCAT 57.982 29.630 16.19 0.00 0.00 3.06
183 184 8.394971 TGAGCTCTTCATTTAAAATTGAGTCA 57.605 30.769 16.19 0.00 0.00 3.41
184 185 9.122613 GTTGAGCTCTTCATTTAAAATTGAGTC 57.877 33.333 16.19 0.00 35.27 3.36
185 186 8.854117 AGTTGAGCTCTTCATTTAAAATTGAGT 58.146 29.630 16.19 0.00 35.27 3.41
195 196 9.061435 GCCTATATTTAGTTGAGCTCTTCATTT 57.939 33.333 16.19 0.00 35.27 2.32
196 197 8.435982 AGCCTATATTTAGTTGAGCTCTTCATT 58.564 33.333 16.19 0.00 35.27 2.57
197 198 7.972301 AGCCTATATTTAGTTGAGCTCTTCAT 58.028 34.615 16.19 0.93 35.27 2.57
198 199 7.366847 AGCCTATATTTAGTTGAGCTCTTCA 57.633 36.000 16.19 0.00 0.00 3.02
199 200 8.669946 AAAGCCTATATTTAGTTGAGCTCTTC 57.330 34.615 16.19 7.90 0.00 2.87
200 201 9.467796 AAAAAGCCTATATTTAGTTGAGCTCTT 57.532 29.630 16.19 3.26 0.00 2.85
216 217 9.458727 GGAGGTAGTAGTTTTTAAAAAGCCTAT 57.541 33.333 13.58 2.81 0.00 2.57
217 218 8.439172 TGGAGGTAGTAGTTTTTAAAAAGCCTA 58.561 33.333 13.58 9.67 0.00 3.93
218 219 7.292319 TGGAGGTAGTAGTTTTTAAAAAGCCT 58.708 34.615 13.58 10.59 0.00 4.58
219 220 7.514784 TGGAGGTAGTAGTTTTTAAAAAGCC 57.485 36.000 13.58 9.12 0.00 4.35
220 221 9.011095 AGATGGAGGTAGTAGTTTTTAAAAAGC 57.989 33.333 13.58 8.88 0.00 3.51
226 227 9.886132 GAATTGAGATGGAGGTAGTAGTTTTTA 57.114 33.333 0.00 0.00 0.00 1.52
227 228 8.383175 TGAATTGAGATGGAGGTAGTAGTTTTT 58.617 33.333 0.00 0.00 0.00 1.94
228 229 7.824779 GTGAATTGAGATGGAGGTAGTAGTTTT 59.175 37.037 0.00 0.00 0.00 2.43
229 230 7.038302 TGTGAATTGAGATGGAGGTAGTAGTTT 60.038 37.037 0.00 0.00 0.00 2.66
230 231 6.440647 TGTGAATTGAGATGGAGGTAGTAGTT 59.559 38.462 0.00 0.00 0.00 2.24
231 232 5.958380 TGTGAATTGAGATGGAGGTAGTAGT 59.042 40.000 0.00 0.00 0.00 2.73
232 233 6.471233 TGTGAATTGAGATGGAGGTAGTAG 57.529 41.667 0.00 0.00 0.00 2.57
233 234 6.127054 CCTTGTGAATTGAGATGGAGGTAGTA 60.127 42.308 0.00 0.00 0.00 1.82
234 235 5.338708 CCTTGTGAATTGAGATGGAGGTAGT 60.339 44.000 0.00 0.00 0.00 2.73
235 236 5.121811 CCTTGTGAATTGAGATGGAGGTAG 58.878 45.833 0.00 0.00 0.00 3.18
236 237 4.626287 GCCTTGTGAATTGAGATGGAGGTA 60.626 45.833 0.00 0.00 0.00 3.08
237 238 3.875369 GCCTTGTGAATTGAGATGGAGGT 60.875 47.826 0.00 0.00 0.00 3.85
238 239 2.686915 GCCTTGTGAATTGAGATGGAGG 59.313 50.000 0.00 0.00 0.00 4.30
239 240 3.618351 AGCCTTGTGAATTGAGATGGAG 58.382 45.455 0.00 0.00 0.00 3.86
240 241 3.726557 AGCCTTGTGAATTGAGATGGA 57.273 42.857 0.00 0.00 0.00 3.41
241 242 3.675228 GCAAGCCTTGTGAATTGAGATGG 60.675 47.826 6.28 0.00 0.00 3.51
242 243 3.057104 TGCAAGCCTTGTGAATTGAGATG 60.057 43.478 6.28 0.00 0.00 2.90
243 244 3.057033 GTGCAAGCCTTGTGAATTGAGAT 60.057 43.478 6.28 0.00 0.00 2.75
244 245 2.294233 GTGCAAGCCTTGTGAATTGAGA 59.706 45.455 6.28 0.00 0.00 3.27
245 246 2.669364 GTGCAAGCCTTGTGAATTGAG 58.331 47.619 6.28 0.00 0.00 3.02
246 247 1.001487 CGTGCAAGCCTTGTGAATTGA 60.001 47.619 6.28 0.00 0.00 2.57
247 248 1.269206 ACGTGCAAGCCTTGTGAATTG 60.269 47.619 6.28 0.00 0.00 2.32
248 249 1.032014 ACGTGCAAGCCTTGTGAATT 58.968 45.000 6.28 0.00 0.00 2.17
249 250 0.311790 CACGTGCAAGCCTTGTGAAT 59.688 50.000 0.82 0.00 32.39 2.57
250 251 1.029408 ACACGTGCAAGCCTTGTGAA 61.029 50.000 17.22 0.00 34.72 3.18
251 252 0.179070 TACACGTGCAAGCCTTGTGA 60.179 50.000 17.22 0.00 34.72 3.58
252 253 0.874390 ATACACGTGCAAGCCTTGTG 59.126 50.000 17.22 0.00 36.64 3.33
253 254 1.156736 GATACACGTGCAAGCCTTGT 58.843 50.000 17.22 0.00 0.00 3.16
254 255 1.442769 AGATACACGTGCAAGCCTTG 58.557 50.000 17.22 0.00 0.00 3.61
255 256 2.418746 CCTAGATACACGTGCAAGCCTT 60.419 50.000 17.22 0.00 0.00 4.35
256 257 1.137086 CCTAGATACACGTGCAAGCCT 59.863 52.381 17.22 8.48 0.00 4.58
257 258 1.134788 ACCTAGATACACGTGCAAGCC 60.135 52.381 17.22 0.50 0.00 4.35
258 259 2.194271 GACCTAGATACACGTGCAAGC 58.806 52.381 17.22 7.09 0.00 4.01
259 260 2.159421 ACGACCTAGATACACGTGCAAG 60.159 50.000 17.22 5.88 35.91 4.01
260 261 1.814394 ACGACCTAGATACACGTGCAA 59.186 47.619 17.22 4.26 35.91 4.08
261 262 1.399440 GACGACCTAGATACACGTGCA 59.601 52.381 17.22 2.06 37.32 4.57
262 263 1.399440 TGACGACCTAGATACACGTGC 59.601 52.381 17.22 0.00 37.32 5.34
263 264 3.752412 TTGACGACCTAGATACACGTG 57.248 47.619 15.48 15.48 37.32 4.49
264 265 4.978083 AATTGACGACCTAGATACACGT 57.022 40.909 0.00 0.00 39.82 4.49
265 266 6.197842 GGTTAAATTGACGACCTAGATACACG 59.802 42.308 0.00 0.00 0.00 4.49
266 267 7.263496 AGGTTAAATTGACGACCTAGATACAC 58.737 38.462 0.00 0.00 40.59 2.90
267 268 7.414222 AGGTTAAATTGACGACCTAGATACA 57.586 36.000 0.00 0.00 40.59 2.29
371 372 9.030452 TGACCAACTTAATAAAAGGCATACATT 57.970 29.630 0.00 0.00 0.00 2.71
372 373 8.588290 TGACCAACTTAATAAAAGGCATACAT 57.412 30.769 0.00 0.00 0.00 2.29
373 374 8.410673 TTGACCAACTTAATAAAAGGCATACA 57.589 30.769 0.00 0.00 0.00 2.29
374 375 9.869757 ATTTGACCAACTTAATAAAAGGCATAC 57.130 29.630 0.00 0.00 0.00 2.39
386 387 9.932207 TCTAGATCGTTAATTTGACCAACTTAA 57.068 29.630 0.00 2.47 0.00 1.85
389 390 9.530633 GTATCTAGATCGTTAATTTGACCAACT 57.469 33.333 8.95 0.00 0.00 3.16
390 391 9.309516 TGTATCTAGATCGTTAATTTGACCAAC 57.690 33.333 8.95 0.00 0.00 3.77
391 392 9.309516 GTGTATCTAGATCGTTAATTTGACCAA 57.690 33.333 8.95 0.00 0.00 3.67
392 393 7.646526 CGTGTATCTAGATCGTTAATTTGACCA 59.353 37.037 8.95 0.00 0.00 4.02
393 394 7.646922 ACGTGTATCTAGATCGTTAATTTGACC 59.353 37.037 8.95 0.00 0.00 4.02
394 395 8.469902 CACGTGTATCTAGATCGTTAATTTGAC 58.530 37.037 8.95 0.00 32.47 3.18
395 396 7.166970 GCACGTGTATCTAGATCGTTAATTTGA 59.833 37.037 18.38 0.00 32.47 2.69
396 397 7.043656 TGCACGTGTATCTAGATCGTTAATTTG 60.044 37.037 18.38 1.87 32.47 2.32
397 398 6.976349 TGCACGTGTATCTAGATCGTTAATTT 59.024 34.615 18.38 0.00 32.47 1.82
398 399 6.500910 TGCACGTGTATCTAGATCGTTAATT 58.499 36.000 18.38 0.00 32.47 1.40
399 400 6.068473 TGCACGTGTATCTAGATCGTTAAT 57.932 37.500 18.38 0.00 32.47 1.40
400 401 5.488645 TGCACGTGTATCTAGATCGTTAA 57.511 39.130 18.38 1.18 32.47 2.01
401 402 5.295045 TCTTGCACGTGTATCTAGATCGTTA 59.705 40.000 18.38 2.31 32.47 3.18
402 403 4.095932 TCTTGCACGTGTATCTAGATCGTT 59.904 41.667 18.38 0.00 32.47 3.85
403 404 3.626217 TCTTGCACGTGTATCTAGATCGT 59.374 43.478 18.38 10.24 35.12 3.73
404 405 3.969352 GTCTTGCACGTGTATCTAGATCG 59.031 47.826 18.38 9.56 0.00 3.69
405 406 5.176407 AGTCTTGCACGTGTATCTAGATC 57.824 43.478 18.38 7.62 0.00 2.75
406 407 5.105716 ACAAGTCTTGCACGTGTATCTAGAT 60.106 40.000 18.38 10.73 44.87 1.98
407 408 4.217767 ACAAGTCTTGCACGTGTATCTAGA 59.782 41.667 18.38 9.88 44.87 2.43
408 409 4.486090 ACAAGTCTTGCACGTGTATCTAG 58.514 43.478 18.38 7.46 44.87 2.43
409 410 4.514781 ACAAGTCTTGCACGTGTATCTA 57.485 40.909 18.38 0.00 44.87 1.98
410 411 3.386768 ACAAGTCTTGCACGTGTATCT 57.613 42.857 18.38 8.82 44.87 1.98
411 412 5.371629 GTTTACAAGTCTTGCACGTGTATC 58.628 41.667 18.38 6.65 45.73 2.24
412 413 4.212636 GGTTTACAAGTCTTGCACGTGTAT 59.787 41.667 18.38 0.00 45.73 2.29
413 414 3.556775 GGTTTACAAGTCTTGCACGTGTA 59.443 43.478 18.38 10.46 44.87 2.90
415 416 2.598907 CGGTTTACAAGTCTTGCACGTG 60.599 50.000 12.28 12.28 40.14 4.49
416 417 1.595794 CGGTTTACAAGTCTTGCACGT 59.404 47.619 12.66 0.00 0.00 4.49
417 418 1.862201 TCGGTTTACAAGTCTTGCACG 59.138 47.619 12.66 9.85 0.00 5.34
418 419 3.128349 TCTCGGTTTACAAGTCTTGCAC 58.872 45.455 12.66 7.00 0.00 4.57
419 420 3.462483 TCTCGGTTTACAAGTCTTGCA 57.538 42.857 12.66 0.00 0.00 4.08
420 421 5.408356 TCTATCTCGGTTTACAAGTCTTGC 58.592 41.667 12.66 0.00 0.00 4.01
421 422 6.622549 ACTCTATCTCGGTTTACAAGTCTTG 58.377 40.000 11.17 11.17 0.00 3.02
422 423 6.837471 ACTCTATCTCGGTTTACAAGTCTT 57.163 37.500 0.00 0.00 0.00 3.01
423 424 7.337167 TCTACTCTATCTCGGTTTACAAGTCT 58.663 38.462 0.00 0.00 0.00 3.24
424 425 7.495279 TCTCTACTCTATCTCGGTTTACAAGTC 59.505 40.741 0.00 0.00 0.00 3.01
425 426 7.337167 TCTCTACTCTATCTCGGTTTACAAGT 58.663 38.462 0.00 0.00 0.00 3.16
426 427 7.519328 GCTCTCTACTCTATCTCGGTTTACAAG 60.519 44.444 0.00 0.00 0.00 3.16
427 428 6.260493 GCTCTCTACTCTATCTCGGTTTACAA 59.740 42.308 0.00 0.00 0.00 2.41
428 429 5.759273 GCTCTCTACTCTATCTCGGTTTACA 59.241 44.000 0.00 0.00 0.00 2.41
429 430 5.759273 TGCTCTCTACTCTATCTCGGTTTAC 59.241 44.000 0.00 0.00 0.00 2.01
430 431 5.926663 TGCTCTCTACTCTATCTCGGTTTA 58.073 41.667 0.00 0.00 0.00 2.01
431 432 4.783055 TGCTCTCTACTCTATCTCGGTTT 58.217 43.478 0.00 0.00 0.00 3.27
432 433 4.425180 TGCTCTCTACTCTATCTCGGTT 57.575 45.455 0.00 0.00 0.00 4.44
433 434 4.634012 ATGCTCTCTACTCTATCTCGGT 57.366 45.455 0.00 0.00 0.00 4.69
434 435 5.527214 CCATATGCTCTCTACTCTATCTCGG 59.473 48.000 0.00 0.00 0.00 4.63
435 436 6.037062 CACCATATGCTCTCTACTCTATCTCG 59.963 46.154 0.00 0.00 0.00 4.04
436 437 6.884295 ACACCATATGCTCTCTACTCTATCTC 59.116 42.308 0.00 0.00 0.00 2.75
437 438 6.789268 ACACCATATGCTCTCTACTCTATCT 58.211 40.000 0.00 0.00 0.00 1.98
438 439 7.461182 AACACCATATGCTCTCTACTCTATC 57.539 40.000 0.00 0.00 0.00 2.08
439 440 8.167392 AGTAACACCATATGCTCTCTACTCTAT 58.833 37.037 0.00 0.00 0.00 1.98
440 441 7.519057 AGTAACACCATATGCTCTCTACTCTA 58.481 38.462 0.00 0.00 0.00 2.43
441 442 6.369629 AGTAACACCATATGCTCTCTACTCT 58.630 40.000 0.00 0.00 0.00 3.24
442 443 6.488683 AGAGTAACACCATATGCTCTCTACTC 59.511 42.308 15.41 15.41 33.83 2.59
443 444 6.369629 AGAGTAACACCATATGCTCTCTACT 58.630 40.000 0.00 0.41 33.83 2.57
444 445 6.642707 AGAGTAACACCATATGCTCTCTAC 57.357 41.667 0.00 0.00 33.83 2.59
446 447 8.941995 TTATAGAGTAACACCATATGCTCTCT 57.058 34.615 10.44 10.91 37.03 3.10
447 448 9.632807 CTTTATAGAGTAACACCATATGCTCTC 57.367 37.037 10.44 5.65 35.32 3.20
448 449 8.589338 CCTTTATAGAGTAACACCATATGCTCT 58.411 37.037 11.48 11.48 37.18 4.09
449 450 8.585881 TCCTTTATAGAGTAACACCATATGCTC 58.414 37.037 0.00 0.00 0.00 4.26
450 451 8.492415 TCCTTTATAGAGTAACACCATATGCT 57.508 34.615 0.00 0.00 0.00 3.79
451 452 9.155975 CATCCTTTATAGAGTAACACCATATGC 57.844 37.037 0.00 0.00 0.00 3.14
452 453 9.155975 GCATCCTTTATAGAGTAACACCATATG 57.844 37.037 0.00 0.00 0.00 1.78
453 454 8.322091 GGCATCCTTTATAGAGTAACACCATAT 58.678 37.037 0.00 0.00 0.00 1.78
454 455 7.524863 CGGCATCCTTTATAGAGTAACACCATA 60.525 40.741 0.00 0.00 0.00 2.74
455 456 6.534634 GGCATCCTTTATAGAGTAACACCAT 58.465 40.000 0.00 0.00 0.00 3.55
456 457 5.452776 CGGCATCCTTTATAGAGTAACACCA 60.453 44.000 0.00 0.00 0.00 4.17
457 458 4.989168 CGGCATCCTTTATAGAGTAACACC 59.011 45.833 0.00 0.00 0.00 4.16
458 459 4.448060 GCGGCATCCTTTATAGAGTAACAC 59.552 45.833 0.00 0.00 0.00 3.32
459 460 4.344102 AGCGGCATCCTTTATAGAGTAACA 59.656 41.667 1.45 0.00 0.00 2.41
460 461 4.884247 AGCGGCATCCTTTATAGAGTAAC 58.116 43.478 1.45 0.00 0.00 2.50
461 462 4.587262 TGAGCGGCATCCTTTATAGAGTAA 59.413 41.667 1.45 0.00 0.00 2.24
462 463 4.149598 TGAGCGGCATCCTTTATAGAGTA 58.850 43.478 1.45 0.00 0.00 2.59
463 464 2.965831 TGAGCGGCATCCTTTATAGAGT 59.034 45.455 1.45 0.00 0.00 3.24
464 465 3.583806 CTGAGCGGCATCCTTTATAGAG 58.416 50.000 1.45 0.00 0.00 2.43
465 466 2.300152 CCTGAGCGGCATCCTTTATAGA 59.700 50.000 1.45 0.00 0.00 1.98
466 467 2.037772 ACCTGAGCGGCATCCTTTATAG 59.962 50.000 1.45 0.00 35.61 1.31
467 468 2.047061 ACCTGAGCGGCATCCTTTATA 58.953 47.619 1.45 0.00 35.61 0.98
468 469 0.839946 ACCTGAGCGGCATCCTTTAT 59.160 50.000 1.45 0.00 35.61 1.40
469 470 0.107703 CACCTGAGCGGCATCCTTTA 60.108 55.000 1.45 0.00 35.61 1.85
470 471 1.377725 CACCTGAGCGGCATCCTTT 60.378 57.895 1.45 0.00 35.61 3.11
471 472 2.270205 CACCTGAGCGGCATCCTT 59.730 61.111 1.45 0.00 35.61 3.36
472 473 3.790437 CCACCTGAGCGGCATCCT 61.790 66.667 1.45 0.00 35.61 3.24
473 474 4.864334 CCCACCTGAGCGGCATCC 62.864 72.222 1.45 0.00 35.61 3.51
479 480 4.767255 GACCAGCCCACCTGAGCG 62.767 72.222 0.00 0.00 44.64 5.03
480 481 3.618780 CTGACCAGCCCACCTGAGC 62.619 68.421 0.00 0.00 44.64 4.26
481 482 2.667418 CTGACCAGCCCACCTGAG 59.333 66.667 0.00 0.00 44.64 3.35
491 492 2.667418 CTCCCACCAGCTGACCAG 59.333 66.667 17.39 0.00 0.00 4.00
492 493 3.640407 GCTCCCACCAGCTGACCA 61.640 66.667 17.39 0.00 36.38 4.02
493 494 4.767255 CGCTCCCACCAGCTGACC 62.767 72.222 17.39 0.00 37.25 4.02
494 495 4.767255 CCGCTCCCACCAGCTGAC 62.767 72.222 17.39 0.00 37.25 3.51
512 513 4.308458 TATTCCCCGCATCGGCCG 62.308 66.667 22.12 22.12 46.86 6.13
513 514 2.185310 ATCTATTCCCCGCATCGGCC 62.185 60.000 0.00 0.00 46.86 6.13
514 515 0.321653 AATCTATTCCCCGCATCGGC 60.322 55.000 0.00 0.00 46.86 5.54
516 517 1.336887 ACGAATCTATTCCCCGCATCG 60.337 52.381 0.00 0.00 33.28 3.84
517 518 2.457366 ACGAATCTATTCCCCGCATC 57.543 50.000 0.00 0.00 33.28 3.91
518 519 2.104111 TGAACGAATCTATTCCCCGCAT 59.896 45.455 0.00 0.00 33.28 4.73
519 520 1.483004 TGAACGAATCTATTCCCCGCA 59.517 47.619 0.00 0.00 33.28 5.69
520 521 2.234300 TGAACGAATCTATTCCCCGC 57.766 50.000 0.00 0.00 33.28 6.13
521 522 4.024048 CCAAATGAACGAATCTATTCCCCG 60.024 45.833 0.00 0.00 33.28 5.73
522 523 5.130350 TCCAAATGAACGAATCTATTCCCC 58.870 41.667 0.00 0.00 33.28 4.81
523 524 6.486657 TCATCCAAATGAACGAATCTATTCCC 59.513 38.462 0.00 0.00 38.97 3.97
524 525 7.012327 TGTCATCCAAATGAACGAATCTATTCC 59.988 37.037 0.00 0.00 43.42 3.01
525 526 7.919690 TGTCATCCAAATGAACGAATCTATTC 58.080 34.615 0.00 0.00 43.42 1.75
526 527 7.864108 TGTCATCCAAATGAACGAATCTATT 57.136 32.000 0.00 0.00 43.42 1.73
527 528 7.500227 ACATGTCATCCAAATGAACGAATCTAT 59.500 33.333 0.00 0.00 43.42 1.98
528 529 6.823182 ACATGTCATCCAAATGAACGAATCTA 59.177 34.615 0.00 0.00 43.42 1.98
529 530 5.649395 ACATGTCATCCAAATGAACGAATCT 59.351 36.000 0.00 0.00 43.42 2.40
530 531 5.740569 CACATGTCATCCAAATGAACGAATC 59.259 40.000 0.00 0.00 43.42 2.52
531 532 5.393352 CCACATGTCATCCAAATGAACGAAT 60.393 40.000 0.00 0.00 43.42 3.34
532 533 4.082841 CCACATGTCATCCAAATGAACGAA 60.083 41.667 0.00 0.00 43.42 3.85
533 534 3.439825 CCACATGTCATCCAAATGAACGA 59.560 43.478 0.00 0.00 43.42 3.85
534 535 3.427909 CCCACATGTCATCCAAATGAACG 60.428 47.826 0.00 0.00 43.42 3.95
535 536 3.676873 GCCCACATGTCATCCAAATGAAC 60.677 47.826 0.00 0.00 43.42 3.18
536 537 2.496871 GCCCACATGTCATCCAAATGAA 59.503 45.455 0.00 0.00 43.42 2.57
537 538 2.101783 GCCCACATGTCATCCAAATGA 58.898 47.619 0.00 0.00 39.63 2.57
538 539 1.137479 GGCCCACATGTCATCCAAATG 59.863 52.381 0.00 0.00 0.00 2.32
539 540 1.488390 GGCCCACATGTCATCCAAAT 58.512 50.000 0.00 0.00 0.00 2.32
540 541 0.614415 GGGCCCACATGTCATCCAAA 60.614 55.000 19.95 0.00 0.00 3.28
541 542 1.000233 GGGCCCACATGTCATCCAA 60.000 57.895 19.95 0.00 0.00 3.53
542 543 2.214122 CTGGGCCCACATGTCATCCA 62.214 60.000 24.45 0.00 0.00 3.41
543 544 1.454479 CTGGGCCCACATGTCATCC 60.454 63.158 24.45 0.00 0.00 3.51
544 545 0.034186 TTCTGGGCCCACATGTCATC 60.034 55.000 24.45 0.00 0.00 2.92
545 546 0.409092 TTTCTGGGCCCACATGTCAT 59.591 50.000 24.45 0.00 0.00 3.06
546 547 0.409092 ATTTCTGGGCCCACATGTCA 59.591 50.000 24.45 1.54 0.00 3.58
547 548 1.560505 AATTTCTGGGCCCACATGTC 58.439 50.000 24.45 0.00 0.00 3.06
548 549 2.311542 TCTAATTTCTGGGCCCACATGT 59.688 45.455 24.45 7.99 0.00 3.21
549 550 3.017048 TCTAATTTCTGGGCCCACATG 57.983 47.619 24.45 12.60 0.00 3.21
550 551 3.245586 TGTTCTAATTTCTGGGCCCACAT 60.246 43.478 24.45 10.75 0.00 3.21
551 552 2.109128 TGTTCTAATTTCTGGGCCCACA 59.891 45.455 24.45 8.55 0.00 4.17
552 553 2.492088 GTGTTCTAATTTCTGGGCCCAC 59.508 50.000 24.45 7.68 0.00 4.61
553 554 2.378547 AGTGTTCTAATTTCTGGGCCCA 59.621 45.455 26.67 26.67 0.00 5.36
554 555 2.755103 CAGTGTTCTAATTTCTGGGCCC 59.245 50.000 17.59 17.59 0.00 5.80
979 980 0.318441 TCTCCTGTCACGCCTTTCTG 59.682 55.000 0.00 0.00 0.00 3.02
1014 1015 3.539560 GAGGATCGCCGGACGTAGC 62.540 68.421 5.05 1.73 44.19 3.58
1341 1342 2.103373 CCCAGATCCTTCTCGAAGTGA 58.897 52.381 5.99 3.79 36.72 3.41
1596 1597 1.610886 GGAGCACCAGGTACCAGTTTC 60.611 57.143 15.94 10.45 35.97 2.78
1663 1666 1.281899 GCTAGTTCATCAGCGACACC 58.718 55.000 0.00 0.00 0.00 4.16
1822 1828 9.685276 TTCACTCATTTCAATCCATATGTAGTT 57.315 29.630 1.24 0.00 0.00 2.24
1831 1837 8.081633 GTGTGTTTATTCACTCATTTCAATCCA 58.918 33.333 0.00 0.00 38.90 3.41
1875 1881 9.932207 TGTTCTAACTTTTTAGTGAATCGGATA 57.068 29.630 0.00 0.00 36.75 2.59
1953 1960 2.072298 CTCTACAACTGCACTCTTGGC 58.928 52.381 0.00 0.00 0.00 4.52
2029 2043 2.254546 AGATCAACAGCAACCGACAA 57.745 45.000 0.00 0.00 0.00 3.18
2123 2303 6.631962 ACCAGCAAGACTAGTTAGTTCATAC 58.368 40.000 0.00 0.00 36.50 2.39
2143 2323 4.451096 ACAAAATAACTAGTGTGCGACCAG 59.549 41.667 0.00 0.00 0.00 4.00
2156 2336 7.859325 ACGGATATACTGCAACAAAATAACT 57.141 32.000 0.00 0.00 0.00 2.24
2160 2340 9.730420 GATTAAACGGATATACTGCAACAAAAT 57.270 29.630 0.00 0.00 0.00 1.82
2200 2380 4.792068 AGGAGTGAACAGAAAACATGGAA 58.208 39.130 0.00 0.00 0.00 3.53
2201 2381 4.103153 AGAGGAGTGAACAGAAAACATGGA 59.897 41.667 0.00 0.00 0.00 3.41
2202 2382 4.392940 AGAGGAGTGAACAGAAAACATGG 58.607 43.478 0.00 0.00 0.00 3.66
2211 2391 4.999950 ACAATGCTAAAGAGGAGTGAACAG 59.000 41.667 0.90 0.00 41.15 3.16
2301 2495 6.716934 TCTAAGTCTAAGTTGCTATGGGAG 57.283 41.667 0.00 0.00 0.00 4.30
2302 2496 6.668283 AGTTCTAAGTCTAAGTTGCTATGGGA 59.332 38.462 0.00 0.00 0.00 4.37
2303 2497 6.879400 AGTTCTAAGTCTAAGTTGCTATGGG 58.121 40.000 0.00 0.00 0.00 4.00
2315 2509 8.812972 TCCTTAATGCAGAAAGTTCTAAGTCTA 58.187 33.333 9.31 0.00 35.34 2.59
2354 2548 9.516314 GAATAAAAGTGGGCATACATTCTAAAC 57.484 33.333 0.00 0.00 0.00 2.01
2364 2558 3.201266 AGGTCGGAATAAAAGTGGGCATA 59.799 43.478 0.00 0.00 0.00 3.14
2372 2566 7.625828 AGGAATTTGTAGGTCGGAATAAAAG 57.374 36.000 0.00 0.00 0.00 2.27
2394 2588 6.357367 ACCACTATACAATAGAAGGCAAAGG 58.643 40.000 1.05 0.00 0.00 3.11
2396 2590 9.914834 AAATACCACTATACAATAGAAGGCAAA 57.085 29.630 1.05 0.00 0.00 3.68
2443 2638 2.564771 CTCAACAACTGCACTCTTGGA 58.435 47.619 0.00 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.