Multiple sequence alignment - TraesCS7D01G182600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G182600 chr7D 100.000 4049 0 0 1 4049 136016521 136012473 0.000000e+00 7478.0
1 TraesCS7D01G182600 chr7D 85.484 62 8 1 3678 3739 583070518 583070578 3.380000e-06 63.9
2 TraesCS7D01G182600 chr7A 93.539 2523 80 26 666 3126 135008896 135006395 0.000000e+00 3679.0
3 TraesCS7D01G182600 chr7A 90.471 850 67 11 3206 4049 135006398 135005557 0.000000e+00 1109.0
4 TraesCS7D01G182600 chr7A 90.151 863 47 17 424 1282 135009112 135008284 0.000000e+00 1088.0
5 TraesCS7D01G182600 chr7A 94.231 104 5 1 3115 3218 579199553 579199451 1.510000e-34 158.0
6 TraesCS7D01G182600 chr7B 95.140 1852 42 20 1309 3126 97974560 97972723 0.000000e+00 2878.0
7 TraesCS7D01G182600 chr7B 89.741 848 43 18 439 1282 97975438 97974631 0.000000e+00 1044.0
8 TraesCS7D01G182600 chr7B 90.515 485 31 11 3206 3682 97972726 97972249 9.550000e-176 627.0
9 TraesCS7D01G182600 chr7B 93.458 107 4 3 3123 3228 412543675 412543779 5.420000e-34 156.0
10 TraesCS7D01G182600 chr1A 87.379 309 28 4 2087 2390 396300802 396301104 1.080000e-90 344.0
11 TraesCS7D01G182600 chr1A 84.536 194 19 9 3863 4048 544998684 544998494 8.940000e-42 182.0
12 TraesCS7D01G182600 chr1A 92.453 106 6 2 3121 3226 497890463 497890566 2.520000e-32 150.0
13 TraesCS7D01G182600 chr3D 83.206 262 32 7 3792 4049 437473444 437473191 3.150000e-56 230.0
14 TraesCS7D01G182600 chr3D 80.159 252 41 7 3802 4049 328969803 328970049 3.220000e-41 180.0
15 TraesCS7D01G182600 chr3D 94.393 107 5 1 3121 3227 153849592 153849487 3.240000e-36 163.0
16 TraesCS7D01G182600 chr3A 81.298 262 31 11 3790 4048 575481655 575481409 3.190000e-46 196.0
17 TraesCS7D01G182600 chr1D 95.370 108 2 3 3110 3216 467803497 467803602 6.960000e-38 169.0
18 TraesCS7D01G182600 chr5D 83.511 188 22 3 3863 4049 263367511 263367332 2.500000e-37 167.0
19 TraesCS7D01G182600 chr5D 79.457 258 34 11 3797 4039 501094227 501094480 9.000000e-37 165.0
20 TraesCS7D01G182600 chr5D 82.723 191 23 4 3860 4049 263353210 263353029 1.160000e-35 161.0
21 TraesCS7D01G182600 chr5D 95.918 98 3 1 3115 3212 336454702 336454798 1.510000e-34 158.0
22 TraesCS7D01G182600 chr5D 96.000 50 1 1 1661 1710 303760271 303760223 3.350000e-11 80.5
23 TraesCS7D01G182600 chr4A 94.444 108 3 3 3115 3220 661959884 661959778 3.240000e-36 163.0
24 TraesCS7D01G182600 chr2D 95.000 100 3 2 3123 3222 22958478 22958381 5.420000e-34 156.0
25 TraesCS7D01G182600 chr2A 89.076 119 10 3 3112 3228 34104332 34104449 1.170000e-30 145.0
26 TraesCS7D01G182600 chr4D 80.526 190 33 4 3861 4048 73245047 73245234 4.220000e-30 143.0
27 TraesCS7D01G182600 chr4D 82.738 168 20 5 3882 4048 502551537 502551378 1.520000e-29 141.0
28 TraesCS7D01G182600 chr4B 80.114 176 25 8 3589 3761 632454918 632455086 5.500000e-24 122.0
29 TraesCS7D01G182600 chr4B 81.013 158 24 5 3589 3744 632616280 632616433 1.980000e-23 121.0
30 TraesCS7D01G182600 chr5B 97.917 48 1 0 1661 1708 348449419 348449372 2.590000e-12 84.2
31 TraesCS7D01G182600 chr5A 96.000 50 1 1 1661 1710 394182519 394182471 3.350000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G182600 chr7D 136012473 136016521 4048 True 7478.000000 7478 100.000000 1 4049 1 chr7D.!!$R1 4048
1 TraesCS7D01G182600 chr7A 135005557 135009112 3555 True 1958.666667 3679 91.387000 424 4049 3 chr7A.!!$R2 3625
2 TraesCS7D01G182600 chr7B 97972249 97975438 3189 True 1516.333333 2878 91.798667 439 3682 3 chr7B.!!$R1 3243

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
297 298 0.034380 TCTCGATCCGGAGACTTGGT 60.034 55.000 11.34 0.0 38.12 3.67 F
312 313 0.036164 TTGGTCAACGGATGGTGAGG 59.964 55.000 0.00 0.0 0.00 3.86 F
320 321 0.108138 CGGATGGTGAGGTCTTGGTC 60.108 60.000 0.00 0.0 0.00 4.02 F
363 364 0.115152 TGCTTCTCTCTCCCCACTGA 59.885 55.000 0.00 0.0 0.00 3.41 F
1554 1613 0.739813 AAGTAACGCTGACATCGCCC 60.740 55.000 0.00 0.0 0.00 6.13 F
2469 2561 1.210478 TGCTCCAATCTCTGGGTAAGC 59.790 52.381 0.00 0.0 46.44 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1538 1597 0.320858 TTTGGGCGATGTCAGCGTTA 60.321 50.000 12.66 0.00 35.00 3.18 R
2283 2374 1.212688 TCGATCCATGGCCAATCAAGT 59.787 47.619 10.96 0.00 0.00 3.16 R
2286 2377 1.420891 TGATCGATCCATGGCCAATCA 59.579 47.619 22.31 10.02 0.00 2.57 R
2287 2378 2.189594 TGATCGATCCATGGCCAATC 57.810 50.000 22.31 7.82 0.00 2.67 R
2548 2640 1.333347 CGTCGAATCCTAGAGACAGCG 60.333 57.143 0.00 0.00 33.56 5.18 R
3712 3822 0.178961 AGTTGAAACCCCAAGCCTCC 60.179 55.000 0.00 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.043854 GGTCATAGATTCTGGATCCCTTAC 57.956 45.833 9.90 0.00 35.21 2.34
24 25 5.544176 GGTCATAGATTCTGGATCCCTTACA 59.456 44.000 9.90 0.00 35.21 2.41
25 26 6.295575 GGTCATAGATTCTGGATCCCTTACAG 60.296 46.154 9.90 0.00 35.21 2.74
26 27 5.247110 TCATAGATTCTGGATCCCTTACAGC 59.753 44.000 9.90 0.00 35.21 4.40
27 28 3.387962 AGATTCTGGATCCCTTACAGCA 58.612 45.455 9.90 0.00 35.21 4.41
28 29 3.390639 AGATTCTGGATCCCTTACAGCAG 59.609 47.826 9.90 0.00 35.21 4.24
29 30 1.500474 TCTGGATCCCTTACAGCAGG 58.500 55.000 9.90 0.00 32.42 4.85
37 38 0.890683 CCTTACAGCAGGGCAAAAGG 59.109 55.000 0.00 0.00 31.46 3.11
38 39 0.890683 CTTACAGCAGGGCAAAAGGG 59.109 55.000 0.00 0.00 0.00 3.95
39 40 0.541764 TTACAGCAGGGCAAAAGGGG 60.542 55.000 0.00 0.00 0.00 4.79
40 41 3.698820 CAGCAGGGCAAAAGGGGC 61.699 66.667 0.00 0.00 0.00 5.80
41 42 4.238062 AGCAGGGCAAAAGGGGCA 62.238 61.111 0.00 0.00 34.52 5.36
42 43 3.698820 GCAGGGCAAAAGGGGCAG 61.699 66.667 0.00 0.00 34.52 4.85
43 44 3.698820 CAGGGCAAAAGGGGCAGC 61.699 66.667 0.00 0.00 34.52 5.25
44 45 3.919806 AGGGCAAAAGGGGCAGCT 61.920 61.111 0.00 0.00 34.52 4.24
45 46 3.698820 GGGCAAAAGGGGCAGCTG 61.699 66.667 10.11 10.11 34.52 4.24
46 47 4.383861 GGCAAAAGGGGCAGCTGC 62.384 66.667 30.88 30.88 41.14 5.25
56 57 2.747460 GCAGCTGCCCGTGATTCA 60.747 61.111 28.76 0.00 34.31 2.57
57 58 3.044059 GCAGCTGCCCGTGATTCAC 62.044 63.158 28.76 6.73 34.31 3.18
58 59 1.672030 CAGCTGCCCGTGATTCACA 60.672 57.895 16.61 0.00 33.40 3.58
59 60 1.672356 AGCTGCCCGTGATTCACAC 60.672 57.895 16.61 6.14 45.11 3.82
68 69 1.299541 GTGATTCACACGCATAGGGG 58.700 55.000 11.93 0.00 39.78 4.79
69 70 0.180171 TGATTCACACGCATAGGGGG 59.820 55.000 0.00 0.00 0.00 5.40
83 84 4.863415 GGGGGAATGCAGTTTGGA 57.137 55.556 0.00 0.00 0.00 3.53
84 85 2.583472 GGGGGAATGCAGTTTGGAG 58.417 57.895 0.00 0.00 0.00 3.86
85 86 1.607801 GGGGGAATGCAGTTTGGAGC 61.608 60.000 0.00 0.00 0.00 4.70
86 87 1.607801 GGGGAATGCAGTTTGGAGCC 61.608 60.000 0.00 0.00 0.00 4.70
87 88 0.613012 GGGAATGCAGTTTGGAGCCT 60.613 55.000 0.00 0.00 0.00 4.58
88 89 1.340991 GGGAATGCAGTTTGGAGCCTA 60.341 52.381 0.00 0.00 0.00 3.93
89 90 2.019984 GGAATGCAGTTTGGAGCCTAG 58.980 52.381 0.00 0.00 0.00 3.02
90 91 2.619074 GGAATGCAGTTTGGAGCCTAGT 60.619 50.000 0.00 0.00 0.00 2.57
91 92 2.887151 ATGCAGTTTGGAGCCTAGTT 57.113 45.000 0.00 0.00 0.00 2.24
92 93 1.896220 TGCAGTTTGGAGCCTAGTTG 58.104 50.000 0.00 0.00 0.00 3.16
93 94 0.523519 GCAGTTTGGAGCCTAGTTGC 59.476 55.000 0.00 0.00 0.00 4.17
94 95 1.884067 GCAGTTTGGAGCCTAGTTGCT 60.884 52.381 0.00 0.00 46.37 3.91
95 96 1.808945 CAGTTTGGAGCCTAGTTGCTG 59.191 52.381 0.00 0.00 42.95 4.41
98 99 2.266055 GGAGCCTAGTTGCTGCGT 59.734 61.111 0.00 0.00 42.95 5.24
99 100 1.376037 GGAGCCTAGTTGCTGCGTT 60.376 57.895 0.00 0.00 42.95 4.84
100 101 1.639298 GGAGCCTAGTTGCTGCGTTG 61.639 60.000 0.00 0.00 42.95 4.10
101 102 2.176792 GCCTAGTTGCTGCGTTGC 59.823 61.111 0.00 0.00 0.00 4.17
102 103 2.616330 GCCTAGTTGCTGCGTTGCA 61.616 57.895 0.00 0.56 41.65 4.08
107 108 2.277820 TTGCTGCGTTGCAACACG 60.278 55.556 28.01 17.85 46.43 4.49
108 109 3.045277 TTGCTGCGTTGCAACACGT 62.045 52.632 28.01 0.00 46.43 4.49
109 110 2.722188 GCTGCGTTGCAACACGTC 60.722 61.111 28.01 14.25 42.43 4.34
110 111 2.423517 CTGCGTTGCAACACGTCG 60.424 61.111 28.01 15.42 42.43 5.12
111 112 3.150410 CTGCGTTGCAACACGTCGT 62.150 57.895 28.01 0.00 42.43 4.34
112 113 2.423039 GCGTTGCAACACGTCGTC 60.423 61.111 28.01 7.55 42.43 4.20
113 114 2.867091 GCGTTGCAACACGTCGTCT 61.867 57.895 28.01 0.00 42.43 4.18
114 115 1.084290 CGTTGCAACACGTCGTCTG 60.084 57.895 28.01 5.71 35.34 3.51
115 116 1.748647 CGTTGCAACACGTCGTCTGT 61.749 55.000 28.01 0.00 35.34 3.41
116 117 0.372334 GTTGCAACACGTCGTCTGTT 59.628 50.000 24.52 0.00 31.80 3.16
118 119 4.872476 CAACACGTCGTCTGTTGC 57.128 55.556 13.67 0.00 41.45 4.17
119 120 2.002899 CAACACGTCGTCTGTTGCA 58.997 52.632 13.67 0.00 41.45 4.08
120 121 0.371989 CAACACGTCGTCTGTTGCAA 59.628 50.000 13.67 0.00 41.45 4.08
121 122 1.080298 AACACGTCGTCTGTTGCAAA 58.920 45.000 0.00 0.00 30.46 3.68
122 123 0.650512 ACACGTCGTCTGTTGCAAAG 59.349 50.000 0.00 1.26 0.00 2.77
123 124 0.042188 CACGTCGTCTGTTGCAAAGG 60.042 55.000 0.00 0.00 0.00 3.11
124 125 0.461339 ACGTCGTCTGTTGCAAAGGT 60.461 50.000 0.00 0.00 0.00 3.50
125 126 0.232303 CGTCGTCTGTTGCAAAGGTC 59.768 55.000 0.00 0.00 0.00 3.85
126 127 1.295792 GTCGTCTGTTGCAAAGGTCA 58.704 50.000 0.00 0.00 0.00 4.02
127 128 1.668751 GTCGTCTGTTGCAAAGGTCAA 59.331 47.619 0.00 0.00 0.00 3.18
128 129 1.939934 TCGTCTGTTGCAAAGGTCAAG 59.060 47.619 0.00 0.00 0.00 3.02
129 130 1.670811 CGTCTGTTGCAAAGGTCAAGT 59.329 47.619 0.00 0.00 0.00 3.16
130 131 2.869801 CGTCTGTTGCAAAGGTCAAGTA 59.130 45.455 0.00 0.00 0.00 2.24
131 132 3.059597 CGTCTGTTGCAAAGGTCAAGTAG 60.060 47.826 0.00 0.00 0.00 2.57
132 133 3.251004 GTCTGTTGCAAAGGTCAAGTAGG 59.749 47.826 0.00 0.00 0.00 3.18
133 134 2.554032 CTGTTGCAAAGGTCAAGTAGGG 59.446 50.000 0.00 0.00 0.00 3.53
134 135 1.886542 GTTGCAAAGGTCAAGTAGGGG 59.113 52.381 0.00 0.00 0.00 4.79
135 136 0.404040 TGCAAAGGTCAAGTAGGGGG 59.596 55.000 0.00 0.00 0.00 5.40
136 137 0.696501 GCAAAGGTCAAGTAGGGGGA 59.303 55.000 0.00 0.00 0.00 4.81
137 138 1.340114 GCAAAGGTCAAGTAGGGGGAG 60.340 57.143 0.00 0.00 0.00 4.30
138 139 1.282157 CAAAGGTCAAGTAGGGGGAGG 59.718 57.143 0.00 0.00 0.00 4.30
139 140 0.797579 AAGGTCAAGTAGGGGGAGGA 59.202 55.000 0.00 0.00 0.00 3.71
140 141 0.340208 AGGTCAAGTAGGGGGAGGAG 59.660 60.000 0.00 0.00 0.00 3.69
141 142 0.691413 GGTCAAGTAGGGGGAGGAGG 60.691 65.000 0.00 0.00 0.00 4.30
142 143 0.042881 GTCAAGTAGGGGGAGGAGGT 59.957 60.000 0.00 0.00 0.00 3.85
143 144 0.797579 TCAAGTAGGGGGAGGAGGTT 59.202 55.000 0.00 0.00 0.00 3.50
144 145 0.912486 CAAGTAGGGGGAGGAGGTTG 59.088 60.000 0.00 0.00 0.00 3.77
145 146 0.914902 AAGTAGGGGGAGGAGGTTGC 60.915 60.000 0.00 0.00 0.00 4.17
146 147 2.365105 TAGGGGGAGGAGGTTGCG 60.365 66.667 0.00 0.00 0.00 4.85
152 153 4.681978 GAGGAGGTTGCGCGTGGT 62.682 66.667 8.43 0.00 0.00 4.16
153 154 4.681978 AGGAGGTTGCGCGTGGTC 62.682 66.667 8.43 0.00 0.00 4.02
155 156 4.980805 GAGGTTGCGCGTGGTCCA 62.981 66.667 8.43 0.00 0.00 4.02
156 157 4.988598 AGGTTGCGCGTGGTCCAG 62.989 66.667 8.43 0.00 0.00 3.86
159 160 4.927782 TTGCGCGTGGTCCAGCTT 62.928 61.111 8.43 0.00 0.00 3.74
165 166 3.286751 GTGGTCCAGCTTGCGCAA 61.287 61.111 23.48 23.48 39.10 4.85
166 167 2.518112 TGGTCCAGCTTGCGCAAA 60.518 55.556 25.01 5.73 39.10 3.68
167 168 1.902918 TGGTCCAGCTTGCGCAAAT 60.903 52.632 25.01 13.03 39.10 2.32
168 169 1.153958 GGTCCAGCTTGCGCAAATC 60.154 57.895 25.01 18.01 39.10 2.17
169 170 1.512734 GTCCAGCTTGCGCAAATCG 60.513 57.895 25.01 13.86 39.10 3.34
170 171 2.202518 CCAGCTTGCGCAAATCGG 60.203 61.111 25.01 19.11 39.10 4.18
171 172 2.689785 CCAGCTTGCGCAAATCGGA 61.690 57.895 25.01 0.00 39.10 4.55
172 173 1.512734 CAGCTTGCGCAAATCGGAC 60.513 57.895 25.01 9.28 38.56 4.79
173 174 2.574212 GCTTGCGCAAATCGGACG 60.574 61.111 25.01 11.54 38.56 4.79
174 175 3.022401 GCTTGCGCAAATCGGACGA 62.022 57.895 25.01 0.00 38.56 4.20
175 176 1.225745 CTTGCGCAAATCGGACGAC 60.226 57.895 25.01 0.00 38.56 4.34
176 177 1.626654 CTTGCGCAAATCGGACGACT 61.627 55.000 25.01 0.00 38.56 4.18
177 178 1.623081 TTGCGCAAATCGGACGACTC 61.623 55.000 22.78 0.00 38.56 3.36
178 179 2.799540 GCGCAAATCGGACGACTCC 61.800 63.158 0.30 0.00 38.94 3.85
195 196 3.330853 CGCAGCGCCGGATCTAAC 61.331 66.667 5.05 0.00 0.00 2.34
196 197 3.330853 GCAGCGCCGGATCTAACG 61.331 66.667 5.05 0.00 0.00 3.18
202 203 3.117372 CCGGATCTAACGGCTCGT 58.883 61.111 0.00 0.00 45.34 4.18
203 204 1.299165 CCGGATCTAACGGCTCGTG 60.299 63.158 0.00 0.00 45.34 4.35
204 205 1.432251 CGGATCTAACGGCTCGTGT 59.568 57.895 0.94 0.00 39.99 4.49
205 206 0.866061 CGGATCTAACGGCTCGTGTG 60.866 60.000 0.94 0.00 39.99 3.82
206 207 0.454600 GGATCTAACGGCTCGTGTGA 59.545 55.000 0.94 3.86 39.99 3.58
207 208 1.534175 GGATCTAACGGCTCGTGTGAG 60.534 57.143 0.94 0.95 45.49 3.51
208 209 1.400846 GATCTAACGGCTCGTGTGAGA 59.599 52.381 0.94 5.64 45.57 3.27
209 210 0.803117 TCTAACGGCTCGTGTGAGAG 59.197 55.000 0.94 0.00 45.57 3.20
210 211 0.522180 CTAACGGCTCGTGTGAGAGT 59.478 55.000 0.94 0.00 45.57 3.24
211 212 0.956633 TAACGGCTCGTGTGAGAGTT 59.043 50.000 0.94 10.02 45.57 3.01
212 213 0.104304 AACGGCTCGTGTGAGAGTTT 59.896 50.000 0.94 0.00 45.57 2.66
213 214 0.956633 ACGGCTCGTGTGAGAGTTTA 59.043 50.000 0.00 0.00 45.57 2.01
214 215 1.544691 ACGGCTCGTGTGAGAGTTTAT 59.455 47.619 0.00 0.00 45.57 1.40
215 216 2.029290 ACGGCTCGTGTGAGAGTTTATT 60.029 45.455 0.00 0.00 45.57 1.40
216 217 2.993899 CGGCTCGTGTGAGAGTTTATTT 59.006 45.455 0.00 0.00 45.57 1.40
217 218 3.432252 CGGCTCGTGTGAGAGTTTATTTT 59.568 43.478 0.00 0.00 45.57 1.82
218 219 4.084013 CGGCTCGTGTGAGAGTTTATTTTT 60.084 41.667 0.00 0.00 45.57 1.94
219 220 5.147162 GGCTCGTGTGAGAGTTTATTTTTG 58.853 41.667 0.00 0.00 45.57 2.44
220 221 5.147162 GCTCGTGTGAGAGTTTATTTTTGG 58.853 41.667 0.00 0.00 45.57 3.28
221 222 5.103290 TCGTGTGAGAGTTTATTTTTGGC 57.897 39.130 0.00 0.00 0.00 4.52
222 223 4.576873 TCGTGTGAGAGTTTATTTTTGGCA 59.423 37.500 0.00 0.00 0.00 4.92
223 224 5.240623 TCGTGTGAGAGTTTATTTTTGGCAT 59.759 36.000 0.00 0.00 0.00 4.40
224 225 5.343058 CGTGTGAGAGTTTATTTTTGGCATG 59.657 40.000 0.00 0.00 0.00 4.06
225 226 5.119125 GTGTGAGAGTTTATTTTTGGCATGC 59.881 40.000 9.90 9.90 0.00 4.06
226 227 5.221402 TGTGAGAGTTTATTTTTGGCATGCA 60.221 36.000 21.36 2.54 0.00 3.96
227 228 5.870978 GTGAGAGTTTATTTTTGGCATGCAT 59.129 36.000 21.36 6.35 0.00 3.96
228 229 6.035327 GTGAGAGTTTATTTTTGGCATGCATC 59.965 38.462 21.36 3.15 0.00 3.91
229 230 6.071221 TGAGAGTTTATTTTTGGCATGCATCT 60.071 34.615 21.36 0.18 0.00 2.90
230 231 7.122501 TGAGAGTTTATTTTTGGCATGCATCTA 59.877 33.333 21.36 0.29 0.00 1.98
231 232 7.260603 AGAGTTTATTTTTGGCATGCATCTAC 58.739 34.615 21.36 1.47 0.00 2.59
232 233 6.340522 AGTTTATTTTTGGCATGCATCTACC 58.659 36.000 21.36 0.64 0.00 3.18
233 234 5.929058 TTATTTTTGGCATGCATCTACCA 57.071 34.783 21.36 8.25 0.00 3.25
234 235 3.872511 TTTTTGGCATGCATCTACCAG 57.127 42.857 21.36 0.00 32.79 4.00
235 236 2.804986 TTTGGCATGCATCTACCAGA 57.195 45.000 21.36 6.03 32.79 3.86
236 237 3.301794 TTTGGCATGCATCTACCAGAT 57.698 42.857 21.36 0.00 34.74 2.90
247 248 2.730382 TCTACCAGATGACGCCTAACA 58.270 47.619 0.00 0.00 0.00 2.41
248 249 2.688446 TCTACCAGATGACGCCTAACAG 59.312 50.000 0.00 0.00 0.00 3.16
249 250 0.108138 ACCAGATGACGCCTAACAGC 60.108 55.000 0.00 0.00 0.00 4.40
250 251 0.811616 CCAGATGACGCCTAACAGCC 60.812 60.000 0.00 0.00 0.00 4.85
251 252 1.141881 AGATGACGCCTAACAGCCG 59.858 57.895 0.00 0.00 0.00 5.52
252 253 2.511600 ATGACGCCTAACAGCCGC 60.512 61.111 0.00 0.00 0.00 6.53
253 254 4.752879 TGACGCCTAACAGCCGCC 62.753 66.667 0.00 0.00 0.00 6.13
254 255 4.752879 GACGCCTAACAGCCGCCA 62.753 66.667 0.00 0.00 0.00 5.69
255 256 4.096003 ACGCCTAACAGCCGCCAT 62.096 61.111 0.00 0.00 0.00 4.40
256 257 2.108157 CGCCTAACAGCCGCCATA 59.892 61.111 0.00 0.00 0.00 2.74
257 258 1.522806 CGCCTAACAGCCGCCATAA 60.523 57.895 0.00 0.00 0.00 1.90
258 259 1.092921 CGCCTAACAGCCGCCATAAA 61.093 55.000 0.00 0.00 0.00 1.40
259 260 1.099689 GCCTAACAGCCGCCATAAAA 58.900 50.000 0.00 0.00 0.00 1.52
260 261 1.202256 GCCTAACAGCCGCCATAAAAC 60.202 52.381 0.00 0.00 0.00 2.43
261 262 2.088423 CCTAACAGCCGCCATAAAACA 58.912 47.619 0.00 0.00 0.00 2.83
262 263 2.490115 CCTAACAGCCGCCATAAAACAA 59.510 45.455 0.00 0.00 0.00 2.83
263 264 2.723124 AACAGCCGCCATAAAACAAG 57.277 45.000 0.00 0.00 0.00 3.16
264 265 0.887933 ACAGCCGCCATAAAACAAGG 59.112 50.000 0.00 0.00 0.00 3.61
265 266 0.458370 CAGCCGCCATAAAACAAGGC 60.458 55.000 0.00 0.00 44.89 4.35
266 267 1.890174 GCCGCCATAAAACAAGGCT 59.110 52.632 0.00 0.00 46.14 4.58
267 268 1.099689 GCCGCCATAAAACAAGGCTA 58.900 50.000 0.00 0.00 46.14 3.93
268 269 1.474879 GCCGCCATAAAACAAGGCTAA 59.525 47.619 0.00 0.00 46.14 3.09
269 270 2.734175 GCCGCCATAAAACAAGGCTAAC 60.734 50.000 0.00 0.00 46.14 2.34
270 271 2.490115 CCGCCATAAAACAAGGCTAACA 59.510 45.455 0.00 0.00 46.14 2.41
271 272 3.130340 CCGCCATAAAACAAGGCTAACAT 59.870 43.478 0.00 0.00 46.14 2.71
272 273 4.336993 CCGCCATAAAACAAGGCTAACATA 59.663 41.667 0.00 0.00 46.14 2.29
273 274 5.505654 CCGCCATAAAACAAGGCTAACATAG 60.506 44.000 0.00 0.00 46.14 2.23
274 275 5.065988 CGCCATAAAACAAGGCTAACATAGT 59.934 40.000 0.00 0.00 46.14 2.12
275 276 6.495706 GCCATAAAACAAGGCTAACATAGTC 58.504 40.000 0.00 0.00 44.92 2.59
276 277 6.318900 GCCATAAAACAAGGCTAACATAGTCT 59.681 38.462 0.00 0.00 43.91 3.24
277 278 7.497909 GCCATAAAACAAGGCTAACATAGTCTA 59.502 37.037 0.00 0.00 40.48 2.59
278 279 9.561069 CCATAAAACAAGGCTAACATAGTCTAT 57.439 33.333 0.00 0.00 40.48 1.98
281 282 8.950208 AAAACAAGGCTAACATAGTCTATCTC 57.050 34.615 0.00 0.00 40.48 2.75
282 283 6.320494 ACAAGGCTAACATAGTCTATCTCG 57.680 41.667 0.00 0.00 40.48 4.04
283 284 6.062749 ACAAGGCTAACATAGTCTATCTCGA 58.937 40.000 0.00 0.00 40.48 4.04
284 285 6.717540 ACAAGGCTAACATAGTCTATCTCGAT 59.282 38.462 0.00 0.00 40.48 3.59
285 286 6.995511 AGGCTAACATAGTCTATCTCGATC 57.004 41.667 0.00 0.00 39.36 3.69
286 287 5.883673 AGGCTAACATAGTCTATCTCGATCC 59.116 44.000 0.00 0.00 39.36 3.36
287 288 5.220700 GGCTAACATAGTCTATCTCGATCCG 60.221 48.000 0.00 0.00 0.00 4.18
288 289 5.220700 GCTAACATAGTCTATCTCGATCCGG 60.221 48.000 0.00 0.00 0.00 5.14
289 290 4.554960 ACATAGTCTATCTCGATCCGGA 57.445 45.455 6.61 6.61 0.00 5.14
290 291 4.509616 ACATAGTCTATCTCGATCCGGAG 58.490 47.826 11.34 0.00 35.32 4.63
291 292 4.223255 ACATAGTCTATCTCGATCCGGAGA 59.777 45.833 11.34 1.05 46.37 3.71
292 293 3.048337 AGTCTATCTCGATCCGGAGAC 57.952 52.381 11.34 9.24 45.24 3.36
293 294 2.635915 AGTCTATCTCGATCCGGAGACT 59.364 50.000 11.34 11.57 45.24 3.24
294 295 3.071892 AGTCTATCTCGATCCGGAGACTT 59.928 47.826 11.34 0.00 45.24 3.01
295 296 3.187637 GTCTATCTCGATCCGGAGACTTG 59.812 52.174 11.34 0.00 45.24 3.16
296 297 1.323412 ATCTCGATCCGGAGACTTGG 58.677 55.000 11.34 0.00 45.24 3.61
297 298 0.034380 TCTCGATCCGGAGACTTGGT 60.034 55.000 11.34 0.00 38.12 3.67
298 299 0.382515 CTCGATCCGGAGACTTGGTC 59.617 60.000 11.34 0.00 36.08 4.02
299 300 0.323087 TCGATCCGGAGACTTGGTCA 60.323 55.000 11.34 0.00 34.60 4.02
300 301 0.530744 CGATCCGGAGACTTGGTCAA 59.469 55.000 11.34 0.00 34.60 3.18
301 302 1.736032 CGATCCGGAGACTTGGTCAAC 60.736 57.143 11.34 0.00 34.60 3.18
302 303 0.246635 ATCCGGAGACTTGGTCAACG 59.753 55.000 11.34 4.26 34.60 4.10
303 304 1.374252 CCGGAGACTTGGTCAACGG 60.374 63.158 14.71 14.71 43.34 4.44
304 305 1.663739 CGGAGACTTGGTCAACGGA 59.336 57.895 0.52 0.00 34.60 4.69
305 306 0.246635 CGGAGACTTGGTCAACGGAT 59.753 55.000 0.52 0.00 34.60 4.18
306 307 1.726853 GGAGACTTGGTCAACGGATG 58.273 55.000 0.52 0.00 34.60 3.51
307 308 1.676014 GGAGACTTGGTCAACGGATGG 60.676 57.143 0.52 0.00 34.60 3.51
308 309 1.002087 GAGACTTGGTCAACGGATGGT 59.998 52.381 0.52 0.00 34.60 3.55
309 310 1.156736 GACTTGGTCAACGGATGGTG 58.843 55.000 0.00 0.00 32.09 4.17
310 311 0.762418 ACTTGGTCAACGGATGGTGA 59.238 50.000 0.00 0.00 0.00 4.02
311 312 1.270839 ACTTGGTCAACGGATGGTGAG 60.271 52.381 0.00 0.00 0.00 3.51
312 313 0.036164 TTGGTCAACGGATGGTGAGG 59.964 55.000 0.00 0.00 0.00 3.86
313 314 1.125093 TGGTCAACGGATGGTGAGGT 61.125 55.000 0.00 0.00 0.00 3.85
314 315 0.391263 GGTCAACGGATGGTGAGGTC 60.391 60.000 0.00 0.00 0.00 3.85
315 316 0.608640 GTCAACGGATGGTGAGGTCT 59.391 55.000 0.00 0.00 0.00 3.85
316 317 1.002087 GTCAACGGATGGTGAGGTCTT 59.998 52.381 0.00 0.00 0.00 3.01
317 318 1.001974 TCAACGGATGGTGAGGTCTTG 59.998 52.381 0.00 0.00 0.00 3.02
318 319 0.324943 AACGGATGGTGAGGTCTTGG 59.675 55.000 0.00 0.00 0.00 3.61
319 320 0.836400 ACGGATGGTGAGGTCTTGGT 60.836 55.000 0.00 0.00 0.00 3.67
320 321 0.108138 CGGATGGTGAGGTCTTGGTC 60.108 60.000 0.00 0.00 0.00 4.02
321 322 1.280457 GGATGGTGAGGTCTTGGTCT 58.720 55.000 0.00 0.00 0.00 3.85
322 323 2.467880 GGATGGTGAGGTCTTGGTCTA 58.532 52.381 0.00 0.00 0.00 2.59
323 324 3.041946 GGATGGTGAGGTCTTGGTCTAT 58.958 50.000 0.00 0.00 0.00 1.98
324 325 3.070302 GGATGGTGAGGTCTTGGTCTATC 59.930 52.174 0.00 0.00 0.00 2.08
325 326 3.474798 TGGTGAGGTCTTGGTCTATCT 57.525 47.619 0.00 0.00 0.00 1.98
326 327 4.603094 TGGTGAGGTCTTGGTCTATCTA 57.397 45.455 0.00 0.00 0.00 1.98
327 328 5.144159 TGGTGAGGTCTTGGTCTATCTAT 57.856 43.478 0.00 0.00 0.00 1.98
328 329 4.895889 TGGTGAGGTCTTGGTCTATCTATG 59.104 45.833 0.00 0.00 0.00 2.23
329 330 4.282195 GGTGAGGTCTTGGTCTATCTATGG 59.718 50.000 0.00 0.00 0.00 2.74
330 331 4.896482 GTGAGGTCTTGGTCTATCTATGGT 59.104 45.833 0.00 0.00 0.00 3.55
331 332 6.069331 GTGAGGTCTTGGTCTATCTATGGTA 58.931 44.000 0.00 0.00 0.00 3.25
332 333 6.016108 GTGAGGTCTTGGTCTATCTATGGTAC 60.016 46.154 0.00 0.00 0.00 3.34
348 349 4.568072 TGGTACATGTTGGACTATGCTT 57.432 40.909 2.30 0.00 30.12 3.91
349 350 4.513442 TGGTACATGTTGGACTATGCTTC 58.487 43.478 2.30 0.00 30.12 3.86
350 351 4.225042 TGGTACATGTTGGACTATGCTTCT 59.775 41.667 2.30 0.00 30.12 2.85
351 352 4.811557 GGTACATGTTGGACTATGCTTCTC 59.188 45.833 2.30 0.00 30.12 2.87
352 353 4.833478 ACATGTTGGACTATGCTTCTCT 57.167 40.909 0.00 0.00 0.00 3.10
353 354 4.764172 ACATGTTGGACTATGCTTCTCTC 58.236 43.478 0.00 0.00 0.00 3.20
354 355 4.469227 ACATGTTGGACTATGCTTCTCTCT 59.531 41.667 0.00 0.00 0.00 3.10
355 356 4.727507 TGTTGGACTATGCTTCTCTCTC 57.272 45.455 0.00 0.00 0.00 3.20
356 357 3.449018 TGTTGGACTATGCTTCTCTCTCC 59.551 47.826 0.00 0.00 0.00 3.71
357 358 2.672098 TGGACTATGCTTCTCTCTCCC 58.328 52.381 0.00 0.00 0.00 4.30
358 359 1.967779 GGACTATGCTTCTCTCTCCCC 59.032 57.143 0.00 0.00 0.00 4.81
359 360 2.672098 GACTATGCTTCTCTCTCCCCA 58.328 52.381 0.00 0.00 0.00 4.96
360 361 2.364002 GACTATGCTTCTCTCTCCCCAC 59.636 54.545 0.00 0.00 0.00 4.61
361 362 2.023501 ACTATGCTTCTCTCTCCCCACT 60.024 50.000 0.00 0.00 0.00 4.00
362 363 1.202330 ATGCTTCTCTCTCCCCACTG 58.798 55.000 0.00 0.00 0.00 3.66
363 364 0.115152 TGCTTCTCTCTCCCCACTGA 59.885 55.000 0.00 0.00 0.00 3.41
364 365 1.273495 TGCTTCTCTCTCCCCACTGAT 60.273 52.381 0.00 0.00 0.00 2.90
365 366 1.412343 GCTTCTCTCTCCCCACTGATC 59.588 57.143 0.00 0.00 0.00 2.92
366 367 2.744760 CTTCTCTCTCCCCACTGATCA 58.255 52.381 0.00 0.00 0.00 2.92
367 368 2.928036 TCTCTCTCCCCACTGATCAA 57.072 50.000 0.00 0.00 0.00 2.57
368 369 3.411454 TCTCTCTCCCCACTGATCAAT 57.589 47.619 0.00 0.00 0.00 2.57
369 370 3.729108 TCTCTCTCCCCACTGATCAATT 58.271 45.455 0.00 0.00 0.00 2.32
370 371 3.453717 TCTCTCTCCCCACTGATCAATTG 59.546 47.826 0.00 0.00 0.00 2.32
371 372 2.092753 TCTCTCCCCACTGATCAATTGC 60.093 50.000 0.00 0.00 0.00 3.56
372 373 1.918262 TCTCCCCACTGATCAATTGCT 59.082 47.619 0.00 0.00 0.00 3.91
373 374 2.309755 TCTCCCCACTGATCAATTGCTT 59.690 45.455 0.00 0.00 0.00 3.91
374 375 3.094572 CTCCCCACTGATCAATTGCTTT 58.905 45.455 0.00 0.00 0.00 3.51
375 376 3.091545 TCCCCACTGATCAATTGCTTTC 58.908 45.455 0.00 0.00 0.00 2.62
376 377 3.094572 CCCCACTGATCAATTGCTTTCT 58.905 45.455 0.00 0.00 0.00 2.52
377 378 3.129988 CCCCACTGATCAATTGCTTTCTC 59.870 47.826 0.00 0.00 0.00 2.87
378 379 3.129988 CCCACTGATCAATTGCTTTCTCC 59.870 47.826 0.00 0.00 0.00 3.71
379 380 4.015084 CCACTGATCAATTGCTTTCTCCT 58.985 43.478 0.00 0.00 0.00 3.69
380 381 4.461781 CCACTGATCAATTGCTTTCTCCTT 59.538 41.667 0.00 0.00 0.00 3.36
381 382 5.047519 CCACTGATCAATTGCTTTCTCCTTT 60.048 40.000 0.00 0.00 0.00 3.11
382 383 5.862323 CACTGATCAATTGCTTTCTCCTTTG 59.138 40.000 0.00 0.00 0.00 2.77
383 384 5.771666 ACTGATCAATTGCTTTCTCCTTTGA 59.228 36.000 0.00 0.00 0.00 2.69
384 385 6.017400 TGATCAATTGCTTTCTCCTTTGAC 57.983 37.500 0.00 0.00 0.00 3.18
385 386 4.853924 TCAATTGCTTTCTCCTTTGACC 57.146 40.909 0.00 0.00 0.00 4.02
386 387 4.214310 TCAATTGCTTTCTCCTTTGACCA 58.786 39.130 0.00 0.00 0.00 4.02
387 388 4.648762 TCAATTGCTTTCTCCTTTGACCAA 59.351 37.500 0.00 0.00 0.00 3.67
388 389 5.128499 TCAATTGCTTTCTCCTTTGACCAAA 59.872 36.000 0.00 0.00 0.00 3.28
389 390 5.813513 ATTGCTTTCTCCTTTGACCAAAT 57.186 34.783 0.00 0.00 0.00 2.32
390 391 5.612725 TTGCTTTCTCCTTTGACCAAATT 57.387 34.783 0.00 0.00 0.00 1.82
391 392 5.612725 TGCTTTCTCCTTTGACCAAATTT 57.387 34.783 0.00 0.00 0.00 1.82
392 393 5.988287 TGCTTTCTCCTTTGACCAAATTTT 58.012 33.333 0.00 0.00 0.00 1.82
393 394 6.413892 TGCTTTCTCCTTTGACCAAATTTTT 58.586 32.000 0.00 0.00 0.00 1.94
394 395 6.315891 TGCTTTCTCCTTTGACCAAATTTTTG 59.684 34.615 0.00 0.00 37.90 2.44
395 396 6.316140 GCTTTCTCCTTTGACCAAATTTTTGT 59.684 34.615 2.63 0.00 36.45 2.83
396 397 7.465916 GCTTTCTCCTTTGACCAAATTTTTGTC 60.466 37.037 9.64 9.64 36.45 3.18
397 398 6.790232 TCTCCTTTGACCAAATTTTTGTCT 57.210 33.333 15.17 0.00 36.45 3.41
398 399 6.805713 TCTCCTTTGACCAAATTTTTGTCTC 58.194 36.000 15.17 1.92 36.45 3.36
399 400 5.587289 TCCTTTGACCAAATTTTTGTCTCG 58.413 37.500 15.17 6.72 36.45 4.04
400 401 5.358442 TCCTTTGACCAAATTTTTGTCTCGA 59.642 36.000 15.17 0.00 36.45 4.04
401 402 5.458779 CCTTTGACCAAATTTTTGTCTCGAC 59.541 40.000 15.17 0.00 36.45 4.20
402 403 5.568685 TTGACCAAATTTTTGTCTCGACA 57.431 34.783 15.17 0.00 39.98 4.35
403 404 5.766150 TGACCAAATTTTTGTCTCGACAT 57.234 34.783 15.17 0.00 41.52 3.06
404 405 6.142818 TGACCAAATTTTTGTCTCGACATT 57.857 33.333 15.17 0.00 41.52 2.71
405 406 7.265647 TGACCAAATTTTTGTCTCGACATTA 57.734 32.000 15.17 0.00 41.52 1.90
406 407 7.359595 TGACCAAATTTTTGTCTCGACATTAG 58.640 34.615 15.17 0.00 41.52 1.73
407 408 6.677913 ACCAAATTTTTGTCTCGACATTAGG 58.322 36.000 0.00 0.48 41.52 2.69
408 409 6.264518 ACCAAATTTTTGTCTCGACATTAGGT 59.735 34.615 0.00 1.02 41.52 3.08
409 410 7.145323 CCAAATTTTTGTCTCGACATTAGGTT 58.855 34.615 0.00 0.00 41.52 3.50
410 411 7.651704 CCAAATTTTTGTCTCGACATTAGGTTT 59.348 33.333 0.00 0.00 41.52 3.27
411 412 9.672086 CAAATTTTTGTCTCGACATTAGGTTTA 57.328 29.630 0.00 0.00 41.52 2.01
414 415 9.840427 ATTTTTGTCTCGACATTAGGTTTATTG 57.160 29.630 0.00 0.00 41.52 1.90
415 416 6.978343 TTGTCTCGACATTAGGTTTATTGG 57.022 37.500 0.00 0.00 41.52 3.16
416 417 6.288941 TGTCTCGACATTAGGTTTATTGGA 57.711 37.500 0.00 0.00 36.21 3.53
417 418 6.884832 TGTCTCGACATTAGGTTTATTGGAT 58.115 36.000 0.00 0.00 36.21 3.41
418 419 6.984474 TGTCTCGACATTAGGTTTATTGGATC 59.016 38.462 0.00 0.00 36.21 3.36
419 420 7.147724 TGTCTCGACATTAGGTTTATTGGATCT 60.148 37.037 0.00 0.00 36.21 2.75
420 421 7.711339 GTCTCGACATTAGGTTTATTGGATCTT 59.289 37.037 0.00 0.00 0.00 2.40
421 422 7.926555 TCTCGACATTAGGTTTATTGGATCTTC 59.073 37.037 0.00 0.00 0.00 2.87
422 423 6.700081 TCGACATTAGGTTTATTGGATCTTCG 59.300 38.462 0.00 0.00 0.00 3.79
423 424 6.479001 CGACATTAGGTTTATTGGATCTTCGT 59.521 38.462 0.00 0.00 0.00 3.85
424 425 7.306632 CGACATTAGGTTTATTGGATCTTCGTC 60.307 40.741 0.00 0.00 0.00 4.20
425 426 6.766467 ACATTAGGTTTATTGGATCTTCGTCC 59.234 38.462 0.00 0.00 38.81 4.79
426 427 4.837093 AGGTTTATTGGATCTTCGTCCA 57.163 40.909 0.00 0.00 46.28 4.02
450 451 1.744522 GAGTCCCTCTGGTTCTACGAC 59.255 57.143 0.00 0.00 0.00 4.34
565 566 1.755179 CCTCCATAGCACCACTTTGG 58.245 55.000 0.00 0.00 45.99 3.28
587 588 7.246674 TGGTTCGAGCTTGAAATATGAATAC 57.753 36.000 18.16 3.17 0.00 1.89
588 589 6.821160 TGGTTCGAGCTTGAAATATGAATACA 59.179 34.615 18.16 4.16 0.00 2.29
589 590 7.335673 TGGTTCGAGCTTGAAATATGAATACAA 59.664 33.333 18.16 0.00 0.00 2.41
590 591 8.181573 GGTTCGAGCTTGAAATATGAATACAAA 58.818 33.333 18.16 0.00 0.00 2.83
644 649 4.999950 TTGCAGGACAAAAACAACAATGTT 59.000 33.333 0.00 0.00 41.72 2.71
645 650 6.166279 TTGCAGGACAAAAACAACAATGTTA 58.834 32.000 0.00 0.00 40.78 2.41
646 651 6.820656 TTGCAGGACAAAAACAACAATGTTAT 59.179 30.769 0.00 0.00 40.78 1.89
647 652 7.335422 TTGCAGGACAAAAACAACAATGTTATT 59.665 29.630 0.00 0.00 40.78 1.40
722 731 9.232082 TCAATTTTTCAGAATGTTAACTGTTCG 57.768 29.630 7.22 7.99 37.40 3.95
750 759 2.621055 TGTGCACCCTACAATTGTGAAC 59.379 45.455 21.42 9.07 38.73 3.18
755 764 3.753272 CACCCTACAATTGTGAACTGAGG 59.247 47.826 21.42 17.04 31.66 3.86
758 767 4.455877 CCCTACAATTGTGAACTGAGGAAC 59.544 45.833 21.42 0.00 0.00 3.62
803 812 3.963383 AAAAACGCAGTAGTTCCACTG 57.037 42.857 0.00 0.00 45.00 3.66
804 813 1.878953 AAACGCAGTAGTTCCACTGG 58.121 50.000 5.49 0.00 45.00 4.00
1047 1056 2.111878 GACATGGGCGGCATAGCT 59.888 61.111 12.47 0.00 37.29 3.32
1048 1057 1.526917 GACATGGGCGGCATAGCTT 60.527 57.895 12.47 0.00 37.29 3.74
1264 1273 2.047655 CGGTGAGTTTGCCGGCTA 60.048 61.111 29.70 19.10 43.85 3.93
1303 1339 3.419759 CGGGCTGTTTTCCGTCCG 61.420 66.667 0.00 0.00 44.67 4.79
1307 1359 1.572941 GCTGTTTTCCGTCCGTTCC 59.427 57.895 0.00 0.00 0.00 3.62
1485 1537 2.726691 CCGACACGGCGTTCATCAC 61.727 63.158 11.19 0.00 41.17 3.06
1538 1597 3.383185 CAGCCTAGCTAGCTACTTCAAGT 59.617 47.826 20.67 0.00 38.95 3.16
1545 1604 3.548268 GCTAGCTACTTCAAGTAACGCTG 59.452 47.826 17.58 10.67 34.42 5.18
1554 1613 0.739813 AAGTAACGCTGACATCGCCC 60.740 55.000 0.00 0.00 0.00 6.13
1844 1920 2.543067 ATTTGCAGGCGGAGGAGGTC 62.543 60.000 0.00 0.00 0.00 3.85
1952 2030 2.054363 CGGCGCATGTACTAATCTCTG 58.946 52.381 10.83 0.00 0.00 3.35
2104 2191 2.575279 ACCAGAGAGCTCACCAATCAAT 59.425 45.455 17.77 0.00 0.00 2.57
2282 2373 2.683211 AGGCAGAAAGGTTGGTTGAT 57.317 45.000 0.00 0.00 0.00 2.57
2283 2374 3.806949 AGGCAGAAAGGTTGGTTGATA 57.193 42.857 0.00 0.00 0.00 2.15
2284 2375 3.421844 AGGCAGAAAGGTTGGTTGATAC 58.578 45.455 0.00 0.00 0.00 2.24
2285 2376 3.074538 AGGCAGAAAGGTTGGTTGATACT 59.925 43.478 0.00 0.00 0.00 2.12
2286 2377 3.826729 GGCAGAAAGGTTGGTTGATACTT 59.173 43.478 0.00 0.00 0.00 2.24
2287 2378 4.321230 GGCAGAAAGGTTGGTTGATACTTG 60.321 45.833 0.00 0.00 0.00 3.16
2288 2379 4.518970 GCAGAAAGGTTGGTTGATACTTGA 59.481 41.667 0.00 0.00 0.00 3.02
2351 2442 8.879299 GCGCTTACTAAATCATGTTATTTAACG 58.121 33.333 0.00 0.00 39.00 3.18
2469 2561 1.210478 TGCTCCAATCTCTGGGTAAGC 59.790 52.381 0.00 0.00 46.44 3.09
2548 2640 4.233123 TGCATATAAAATCTGCTGCTGC 57.767 40.909 8.89 8.89 36.84 5.25
2752 2844 5.752955 TGTTTTGGCTGCTTGTTTATCTTTC 59.247 36.000 0.00 0.00 0.00 2.62
3122 3227 8.575589 TCAAGAAGCTTCAGCATGTTTAATTAA 58.424 29.630 27.57 0.00 45.16 1.40
3123 3228 8.857216 CAAGAAGCTTCAGCATGTTTAATTAAG 58.143 33.333 27.57 0.00 45.16 1.85
3124 3229 8.115490 AGAAGCTTCAGCATGTTTAATTAAGT 57.885 30.769 27.57 0.00 45.16 2.24
3125 3230 9.231297 AGAAGCTTCAGCATGTTTAATTAAGTA 57.769 29.630 27.57 0.00 45.16 2.24
3126 3231 9.278734 GAAGCTTCAGCATGTTTAATTAAGTAC 57.721 33.333 21.67 0.00 45.16 2.73
3127 3232 8.567285 AGCTTCAGCATGTTTAATTAAGTACT 57.433 30.769 0.75 0.00 45.16 2.73
3128 3233 8.669243 AGCTTCAGCATGTTTAATTAAGTACTC 58.331 33.333 0.00 0.00 45.16 2.59
3129 3234 7.910683 GCTTCAGCATGTTTAATTAAGTACTCC 59.089 37.037 0.00 0.00 41.59 3.85
3130 3235 7.859325 TCAGCATGTTTAATTAAGTACTCCC 57.141 36.000 0.00 0.00 37.40 4.30
3131 3236 7.630082 TCAGCATGTTTAATTAAGTACTCCCT 58.370 34.615 0.00 0.00 37.40 4.20
3132 3237 7.769044 TCAGCATGTTTAATTAAGTACTCCCTC 59.231 37.037 0.00 0.00 37.40 4.30
3133 3238 7.012421 CAGCATGTTTAATTAAGTACTCCCTCC 59.988 40.741 0.00 0.00 0.00 4.30
3134 3239 6.018180 GCATGTTTAATTAAGTACTCCCTCCG 60.018 42.308 0.00 0.00 0.00 4.63
3135 3240 6.610075 TGTTTAATTAAGTACTCCCTCCGT 57.390 37.500 0.00 0.00 0.00 4.69
3136 3241 7.716799 TGTTTAATTAAGTACTCCCTCCGTA 57.283 36.000 0.00 0.00 0.00 4.02
3137 3242 8.133024 TGTTTAATTAAGTACTCCCTCCGTAA 57.867 34.615 0.00 0.00 0.00 3.18
3138 3243 8.592809 TGTTTAATTAAGTACTCCCTCCGTAAA 58.407 33.333 0.00 0.00 0.00 2.01
3139 3244 8.873830 GTTTAATTAAGTACTCCCTCCGTAAAC 58.126 37.037 0.00 2.47 0.00 2.01
3140 3245 6.864151 AATTAAGTACTCCCTCCGTAAACT 57.136 37.500 0.00 0.00 0.00 2.66
3141 3246 7.961326 AATTAAGTACTCCCTCCGTAAACTA 57.039 36.000 0.00 0.00 0.00 2.24
3142 3247 7.961326 ATTAAGTACTCCCTCCGTAAACTAA 57.039 36.000 0.00 0.00 0.00 2.24
3143 3248 7.961326 TTAAGTACTCCCTCCGTAAACTAAT 57.039 36.000 0.00 0.00 0.00 1.73
3144 3249 9.646522 ATTAAGTACTCCCTCCGTAAACTAATA 57.353 33.333 0.00 0.00 0.00 0.98
3145 3250 9.646522 TTAAGTACTCCCTCCGTAAACTAATAT 57.353 33.333 0.00 0.00 0.00 1.28
3147 3252 9.646522 AAGTACTCCCTCCGTAAACTAATATAA 57.353 33.333 0.00 0.00 0.00 0.98
3148 3253 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
3149 3254 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
3150 3255 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
3151 3256 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
3152 3257 6.779049 TCCCTCCGTAAACTAATATAAGAGCA 59.221 38.462 0.00 0.00 0.00 4.26
3153 3258 7.453752 TCCCTCCGTAAACTAATATAAGAGCAT 59.546 37.037 0.00 0.00 0.00 3.79
3154 3259 8.095169 CCCTCCGTAAACTAATATAAGAGCATT 58.905 37.037 0.00 0.00 0.00 3.56
3155 3260 9.490379 CCTCCGTAAACTAATATAAGAGCATTT 57.510 33.333 0.00 0.00 0.00 2.32
3182 3287 9.733219 AGAATACTAAAGTAGTGATCTAAACGC 57.267 33.333 0.00 0.00 39.81 4.84
3183 3288 9.733219 GAATACTAAAGTAGTGATCTAAACGCT 57.267 33.333 0.00 0.00 39.81 5.07
3184 3289 9.733219 AATACTAAAGTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 39.81 5.03
3185 3290 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
3186 3291 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
3187 3292 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
3188 3293 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
3204 3309 8.658499 ACGCTCTTATATTAGTTTACAAAGGG 57.342 34.615 0.00 0.00 0.00 3.95
3229 3334 8.021396 GGAGTAGTTTGTTAGCTAATTTGGTTG 58.979 37.037 9.88 0.00 0.00 3.77
3232 3337 9.603298 GTAGTTTGTTAGCTAATTTGGTTGTAC 57.397 33.333 9.88 1.82 0.00 2.90
3233 3338 8.459911 AGTTTGTTAGCTAATTTGGTTGTACT 57.540 30.769 9.88 1.53 0.00 2.73
3255 3361 9.062524 GTACTTATTCCATGCATGTAATAACCA 57.937 33.333 25.22 16.36 29.38 3.67
3264 3370 4.694982 TGCATGTAATAACCATCGCCTATG 59.305 41.667 0.00 0.00 35.15 2.23
3285 3391 5.726980 TGTCTAGTTCCCGCTTTTAGTTA 57.273 39.130 0.00 0.00 0.00 2.24
3307 3413 1.415659 CCTTTGTTGCATGGGTTTGGA 59.584 47.619 0.00 0.00 0.00 3.53
3338 3444 3.449227 GCAAGTTAAGCGGCCCCC 61.449 66.667 0.00 0.00 0.00 5.40
3398 3506 3.070159 ACATTCCCCTGTATGATGACTCG 59.930 47.826 0.00 0.00 0.00 4.18
3400 3508 2.031870 TCCCCTGTATGATGACTCGTG 58.968 52.381 0.00 0.00 0.00 4.35
3402 3510 2.630098 CCCCTGTATGATGACTCGTGAT 59.370 50.000 0.00 0.00 0.00 3.06
3404 3512 4.053983 CCCTGTATGATGACTCGTGATTG 58.946 47.826 0.00 0.00 0.00 2.67
3492 3602 8.561738 TTACTTAAGTGCTCCATAAAAAGAGG 57.438 34.615 18.56 0.00 0.00 3.69
3552 3662 4.434330 GCGGAAGATTTTGACTTAGTCGTG 60.434 45.833 7.92 0.00 34.95 4.35
3624 3734 8.136563 TGTAATGGTTATGTGGTAGTTGTCTA 57.863 34.615 0.00 0.00 0.00 2.59
3626 3736 9.609346 GTAATGGTTATGTGGTAGTTGTCTATT 57.391 33.333 0.00 0.00 0.00 1.73
3663 3773 5.850557 TGTTCATGACTTTGACCACATTT 57.149 34.783 0.00 0.00 0.00 2.32
3716 3826 2.686602 CATCACACTGATGCGGAGG 58.313 57.895 0.00 0.00 46.37 4.30
3747 3857 7.552687 GGGTTTCAACTTCCTTTTTGAAAGAAT 59.447 33.333 9.21 0.00 46.94 2.40
3789 3899 5.591643 ATTATACTAGCGTGATTTTGGCG 57.408 39.130 0.00 0.00 0.00 5.69
3795 3905 1.376683 CGTGATTTTGGCGGGAGGA 60.377 57.895 0.00 0.00 0.00 3.71
3832 3942 1.205893 GAGGATATGCTCCCGGATGAC 59.794 57.143 12.99 0.00 46.27 3.06
3833 3943 0.976641 GGATATGCTCCCGGATGACA 59.023 55.000 0.73 0.00 38.19 3.58
3835 3945 2.026822 GGATATGCTCCCGGATGACAAT 60.027 50.000 0.73 0.00 38.19 2.71
3838 3950 2.620251 TGCTCCCGGATGACAATAAG 57.380 50.000 0.73 0.00 0.00 1.73
3840 3952 2.238646 TGCTCCCGGATGACAATAAGTT 59.761 45.455 0.73 0.00 0.00 2.66
3844 3956 5.110814 TCCCGGATGACAATAAGTTCAAT 57.889 39.130 0.73 0.00 0.00 2.57
3845 3957 6.241882 TCCCGGATGACAATAAGTTCAATA 57.758 37.500 0.73 0.00 0.00 1.90
3849 3961 8.247562 CCCGGATGACAATAAGTTCAATAAAAA 58.752 33.333 0.73 0.00 0.00 1.94
3905 4019 2.811855 TGTTCGTGTTAGTCTCGCAAA 58.188 42.857 0.00 0.00 33.77 3.68
3923 4037 4.025896 CGCAAACATGCTTGACAAATTTCA 60.026 37.500 12.98 0.00 0.00 2.69
3931 4045 4.208873 TGCTTGACAAATTTCATGCGAAAC 59.791 37.500 11.31 0.00 45.30 2.78
3947 4061 1.782028 AAACGGAGCAGCGGTGTTTC 61.782 55.000 17.07 8.22 0.00 2.78
3950 4064 2.251642 GGAGCAGCGGTGTTTCGTT 61.252 57.895 17.07 0.00 0.00 3.85
3955 4069 1.522806 AGCGGTGTTTCGTTGCTGA 60.523 52.632 0.00 0.00 33.99 4.26
3956 4070 1.092921 AGCGGTGTTTCGTTGCTGAA 61.093 50.000 0.00 0.00 33.99 3.02
3986 4100 5.467035 ACAAATTAGGGTGACATTTGGTG 57.533 39.130 9.82 0.00 40.68 4.17
3995 4109 5.600484 AGGGTGACATTTGGTGTTCAATTTA 59.400 36.000 0.00 0.00 42.36 1.40
3996 4110 6.269769 AGGGTGACATTTGGTGTTCAATTTAT 59.730 34.615 0.00 0.00 42.36 1.40
4016 4130 9.676195 AATTTATTTTTGTTTATTGCACAAGCC 57.324 25.926 0.00 0.00 41.13 4.35
4021 4135 5.476752 TTGTTTATTGCACAAGCCAAAAC 57.523 34.783 0.00 0.00 41.13 2.43
4022 4136 4.507710 TGTTTATTGCACAAGCCAAAACA 58.492 34.783 0.00 9.90 40.31 2.83
4028 4142 5.476752 TTGCACAAGCCAAAACATTTAAC 57.523 34.783 0.00 0.00 41.13 2.01
4036 4150 6.130298 AGCCAAAACATTTAACCTTTTTGC 57.870 33.333 8.24 5.03 37.53 3.68
4040 4154 6.418141 CAAAACATTTAACCTTTTTGCCTCG 58.582 36.000 0.00 0.00 33.50 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.544176 TGTAAGGGATCCAGAATCTATGACC 59.456 44.000 15.23 0.00 34.56 4.02
1 2 6.672266 TGTAAGGGATCCAGAATCTATGAC 57.328 41.667 15.23 1.62 34.56 3.06
2 3 5.247110 GCTGTAAGGGATCCAGAATCTATGA 59.753 44.000 15.23 0.00 34.56 2.15
3 4 5.012458 TGCTGTAAGGGATCCAGAATCTATG 59.988 44.000 15.23 0.00 34.56 2.23
4 5 5.158141 TGCTGTAAGGGATCCAGAATCTAT 58.842 41.667 15.23 0.00 34.56 1.98
5 6 4.556697 TGCTGTAAGGGATCCAGAATCTA 58.443 43.478 15.23 0.00 34.56 1.98
6 7 3.387962 TGCTGTAAGGGATCCAGAATCT 58.612 45.455 15.23 0.00 34.56 2.40
7 8 3.495806 CCTGCTGTAAGGGATCCAGAATC 60.496 52.174 15.23 0.00 33.28 2.52
8 9 2.441001 CCTGCTGTAAGGGATCCAGAAT 59.559 50.000 15.23 0.00 33.28 2.40
9 10 1.839994 CCTGCTGTAAGGGATCCAGAA 59.160 52.381 15.23 0.00 33.28 3.02
10 11 1.500474 CCTGCTGTAAGGGATCCAGA 58.500 55.000 15.23 0.00 33.28 3.86
18 19 0.890683 CCTTTTGCCCTGCTGTAAGG 59.109 55.000 0.00 0.00 37.05 2.69
19 20 0.890683 CCCTTTTGCCCTGCTGTAAG 59.109 55.000 0.00 0.00 0.00 2.34
20 21 0.541764 CCCCTTTTGCCCTGCTGTAA 60.542 55.000 0.00 0.00 0.00 2.41
21 22 1.076549 CCCCTTTTGCCCTGCTGTA 59.923 57.895 0.00 0.00 0.00 2.74
22 23 2.203684 CCCCTTTTGCCCTGCTGT 60.204 61.111 0.00 0.00 0.00 4.40
23 24 3.698820 GCCCCTTTTGCCCTGCTG 61.699 66.667 0.00 0.00 0.00 4.41
24 25 4.238062 TGCCCCTTTTGCCCTGCT 62.238 61.111 0.00 0.00 0.00 4.24
25 26 3.698820 CTGCCCCTTTTGCCCTGC 61.699 66.667 0.00 0.00 0.00 4.85
26 27 3.698820 GCTGCCCCTTTTGCCCTG 61.699 66.667 0.00 0.00 0.00 4.45
27 28 3.919806 AGCTGCCCCTTTTGCCCT 61.920 61.111 0.00 0.00 0.00 5.19
28 29 3.698820 CAGCTGCCCCTTTTGCCC 61.699 66.667 0.00 0.00 0.00 5.36
29 30 4.383861 GCAGCTGCCCCTTTTGCC 62.384 66.667 28.76 0.00 34.31 4.52
39 40 2.747460 TGAATCACGGGCAGCTGC 60.747 61.111 30.88 30.88 41.14 5.25
40 41 1.672030 TGTGAATCACGGGCAGCTG 60.672 57.895 10.11 10.11 37.14 4.24
41 42 1.672356 GTGTGAATCACGGGCAGCT 60.672 57.895 9.00 0.00 37.14 4.24
42 43 2.870372 GTGTGAATCACGGGCAGC 59.130 61.111 9.00 0.00 37.14 5.25
49 50 1.299541 CCCCTATGCGTGTGAATCAC 58.700 55.000 6.41 6.41 43.03 3.06
50 51 0.180171 CCCCCTATGCGTGTGAATCA 59.820 55.000 0.00 0.00 0.00 2.57
51 52 3.006672 CCCCCTATGCGTGTGAATC 57.993 57.895 0.00 0.00 0.00 2.52
66 67 1.607801 GCTCCAAACTGCATTCCCCC 61.608 60.000 0.00 0.00 0.00 5.40
67 68 1.607801 GGCTCCAAACTGCATTCCCC 61.608 60.000 0.00 0.00 0.00 4.81
68 69 0.613012 AGGCTCCAAACTGCATTCCC 60.613 55.000 0.00 0.00 0.00 3.97
69 70 2.019984 CTAGGCTCCAAACTGCATTCC 58.980 52.381 0.00 0.00 0.00 3.01
70 71 2.716217 ACTAGGCTCCAAACTGCATTC 58.284 47.619 0.00 0.00 0.00 2.67
71 72 2.821969 CAACTAGGCTCCAAACTGCATT 59.178 45.455 0.00 0.00 0.00 3.56
72 73 2.440409 CAACTAGGCTCCAAACTGCAT 58.560 47.619 0.00 0.00 0.00 3.96
73 74 1.896220 CAACTAGGCTCCAAACTGCA 58.104 50.000 0.00 0.00 0.00 4.41
74 75 0.523519 GCAACTAGGCTCCAAACTGC 59.476 55.000 0.00 0.00 0.00 4.40
75 76 1.808945 CAGCAACTAGGCTCCAAACTG 59.191 52.381 0.00 0.00 43.68 3.16
76 77 1.884067 GCAGCAACTAGGCTCCAAACT 60.884 52.381 0.00 0.00 43.68 2.66
77 78 0.523519 GCAGCAACTAGGCTCCAAAC 59.476 55.000 0.00 0.00 43.68 2.93
78 79 0.955428 CGCAGCAACTAGGCTCCAAA 60.955 55.000 0.00 0.00 43.68 3.28
79 80 1.375908 CGCAGCAACTAGGCTCCAA 60.376 57.895 0.00 0.00 43.68 3.53
80 81 2.111999 AACGCAGCAACTAGGCTCCA 62.112 55.000 0.00 0.00 43.68 3.86
81 82 1.376037 AACGCAGCAACTAGGCTCC 60.376 57.895 0.00 0.00 43.68 4.70
82 83 1.790387 CAACGCAGCAACTAGGCTC 59.210 57.895 0.00 0.00 43.68 4.70
84 85 2.176792 GCAACGCAGCAACTAGGC 59.823 61.111 0.00 0.00 0.00 3.93
85 86 3.654201 TGCAACGCAGCAACTAGG 58.346 55.556 0.00 0.00 42.46 3.02
91 92 3.447634 GACGTGTTGCAACGCAGCA 62.448 57.895 34.88 12.74 46.57 4.41
97 98 0.372334 AACAGACGACGTGTTGCAAC 59.628 50.000 22.83 22.83 36.76 4.17
98 99 0.371989 CAACAGACGACGTGTTGCAA 59.628 50.000 15.60 0.00 46.03 4.08
99 100 2.002899 CAACAGACGACGTGTTGCA 58.997 52.632 15.60 0.00 46.03 4.08
100 101 4.872476 CAACAGACGACGTGTTGC 57.128 55.556 15.60 0.00 46.03 4.17
102 103 1.062002 CTTTGCAACAGACGACGTGTT 59.938 47.619 4.58 0.86 38.71 3.32
103 104 0.650512 CTTTGCAACAGACGACGTGT 59.349 50.000 4.58 0.00 0.00 4.49
104 105 0.042188 CCTTTGCAACAGACGACGTG 60.042 55.000 4.58 0.00 0.00 4.49
105 106 0.461339 ACCTTTGCAACAGACGACGT 60.461 50.000 0.00 0.00 0.00 4.34
106 107 0.232303 GACCTTTGCAACAGACGACG 59.768 55.000 0.00 0.00 0.00 5.12
107 108 1.295792 TGACCTTTGCAACAGACGAC 58.704 50.000 0.00 0.00 0.00 4.34
108 109 1.939934 CTTGACCTTTGCAACAGACGA 59.060 47.619 0.00 0.00 0.00 4.20
109 110 1.670811 ACTTGACCTTTGCAACAGACG 59.329 47.619 0.00 0.00 0.00 4.18
110 111 3.251004 CCTACTTGACCTTTGCAACAGAC 59.749 47.826 0.00 0.00 0.00 3.51
111 112 3.476552 CCTACTTGACCTTTGCAACAGA 58.523 45.455 0.00 0.00 0.00 3.41
112 113 2.554032 CCCTACTTGACCTTTGCAACAG 59.446 50.000 0.00 0.00 0.00 3.16
113 114 2.582052 CCCTACTTGACCTTTGCAACA 58.418 47.619 0.00 0.00 0.00 3.33
114 115 1.886542 CCCCTACTTGACCTTTGCAAC 59.113 52.381 0.00 0.00 0.00 4.17
115 116 1.203001 CCCCCTACTTGACCTTTGCAA 60.203 52.381 0.00 0.00 0.00 4.08
116 117 0.404040 CCCCCTACTTGACCTTTGCA 59.596 55.000 0.00 0.00 0.00 4.08
117 118 0.696501 TCCCCCTACTTGACCTTTGC 59.303 55.000 0.00 0.00 0.00 3.68
118 119 1.282157 CCTCCCCCTACTTGACCTTTG 59.718 57.143 0.00 0.00 0.00 2.77
119 120 1.153565 TCCTCCCCCTACTTGACCTTT 59.846 52.381 0.00 0.00 0.00 3.11
120 121 0.797579 TCCTCCCCCTACTTGACCTT 59.202 55.000 0.00 0.00 0.00 3.50
121 122 0.340208 CTCCTCCCCCTACTTGACCT 59.660 60.000 0.00 0.00 0.00 3.85
122 123 0.691413 CCTCCTCCCCCTACTTGACC 60.691 65.000 0.00 0.00 0.00 4.02
123 124 0.042881 ACCTCCTCCCCCTACTTGAC 59.957 60.000 0.00 0.00 0.00 3.18
124 125 0.797579 AACCTCCTCCCCCTACTTGA 59.202 55.000 0.00 0.00 0.00 3.02
125 126 0.912486 CAACCTCCTCCCCCTACTTG 59.088 60.000 0.00 0.00 0.00 3.16
126 127 0.914902 GCAACCTCCTCCCCCTACTT 60.915 60.000 0.00 0.00 0.00 2.24
127 128 1.307084 GCAACCTCCTCCCCCTACT 60.307 63.158 0.00 0.00 0.00 2.57
128 129 2.732619 CGCAACCTCCTCCCCCTAC 61.733 68.421 0.00 0.00 0.00 3.18
129 130 2.365105 CGCAACCTCCTCCCCCTA 60.365 66.667 0.00 0.00 0.00 3.53
135 136 4.681978 ACCACGCGCAACCTCCTC 62.682 66.667 5.73 0.00 0.00 3.71
136 137 4.681978 GACCACGCGCAACCTCCT 62.682 66.667 5.73 0.00 0.00 3.69
138 139 4.980805 TGGACCACGCGCAACCTC 62.981 66.667 5.73 0.00 0.00 3.85
139 140 4.988598 CTGGACCACGCGCAACCT 62.989 66.667 5.73 0.00 0.00 3.50
142 143 4.927782 AAGCTGGACCACGCGCAA 62.928 61.111 5.73 0.00 0.00 4.85
157 158 1.225745 GTCGTCCGATTTGCGCAAG 60.226 57.895 23.68 11.90 39.11 4.01
158 159 1.623081 GAGTCGTCCGATTTGCGCAA 61.623 55.000 21.02 21.02 39.11 4.85
159 160 2.048597 AGTCGTCCGATTTGCGCA 60.049 55.556 5.66 5.66 39.11 6.09
160 161 2.695646 GAGTCGTCCGATTTGCGC 59.304 61.111 0.00 0.00 39.11 6.09
161 162 3.384927 GGAGTCGTCCGATTTGCG 58.615 61.111 0.00 0.00 40.47 4.85
177 178 4.585526 TTAGATCCGGCGCTGCGG 62.586 66.667 24.61 17.70 0.00 5.69
178 179 3.330853 GTTAGATCCGGCGCTGCG 61.331 66.667 19.17 19.17 0.00 5.18
179 180 3.330853 CGTTAGATCCGGCGCTGC 61.331 66.667 11.81 0.00 0.00 5.25
180 181 2.658593 CCGTTAGATCCGGCGCTG 60.659 66.667 9.96 9.96 38.85 5.18
186 187 0.866061 CACACGAGCCGTTAGATCCG 60.866 60.000 0.00 0.00 38.32 4.18
187 188 0.454600 TCACACGAGCCGTTAGATCC 59.545 55.000 0.00 0.00 38.32 3.36
188 189 1.400846 TCTCACACGAGCCGTTAGATC 59.599 52.381 0.00 0.00 38.32 2.75
189 190 1.402259 CTCTCACACGAGCCGTTAGAT 59.598 52.381 0.00 0.00 38.32 1.98
190 191 0.803117 CTCTCACACGAGCCGTTAGA 59.197 55.000 0.00 2.04 38.32 2.10
191 192 0.522180 ACTCTCACACGAGCCGTTAG 59.478 55.000 0.00 0.00 38.32 2.34
192 193 0.956633 AACTCTCACACGAGCCGTTA 59.043 50.000 0.00 0.00 38.32 3.18
193 194 0.104304 AAACTCTCACACGAGCCGTT 59.896 50.000 0.00 0.00 38.32 4.44
194 195 0.956633 TAAACTCTCACACGAGCCGT 59.043 50.000 0.00 0.00 42.36 5.68
195 196 2.279582 ATAAACTCTCACACGAGCCG 57.720 50.000 0.00 0.00 39.30 5.52
196 197 5.147162 CAAAAATAAACTCTCACACGAGCC 58.853 41.667 0.00 0.00 39.30 4.70
197 198 5.147162 CCAAAAATAAACTCTCACACGAGC 58.853 41.667 0.00 0.00 39.30 5.03
198 199 5.147162 GCCAAAAATAAACTCTCACACGAG 58.853 41.667 0.00 0.00 40.98 4.18
199 200 4.576873 TGCCAAAAATAAACTCTCACACGA 59.423 37.500 0.00 0.00 0.00 4.35
200 201 4.854399 TGCCAAAAATAAACTCTCACACG 58.146 39.130 0.00 0.00 0.00 4.49
201 202 5.119125 GCATGCCAAAAATAAACTCTCACAC 59.881 40.000 6.36 0.00 0.00 3.82
202 203 5.221402 TGCATGCCAAAAATAAACTCTCACA 60.221 36.000 16.68 0.00 0.00 3.58
203 204 5.229423 TGCATGCCAAAAATAAACTCTCAC 58.771 37.500 16.68 0.00 0.00 3.51
204 205 5.465532 TGCATGCCAAAAATAAACTCTCA 57.534 34.783 16.68 0.00 0.00 3.27
205 206 6.335777 AGATGCATGCCAAAAATAAACTCTC 58.664 36.000 16.68 0.00 0.00 3.20
206 207 6.290294 AGATGCATGCCAAAAATAAACTCT 57.710 33.333 16.68 0.00 0.00 3.24
207 208 6.476706 GGTAGATGCATGCCAAAAATAAACTC 59.523 38.462 16.68 0.00 0.00 3.01
208 209 6.070881 TGGTAGATGCATGCCAAAAATAAACT 60.071 34.615 16.68 0.18 31.37 2.66
209 210 6.105333 TGGTAGATGCATGCCAAAAATAAAC 58.895 36.000 16.68 3.31 31.37 2.01
210 211 6.154192 TCTGGTAGATGCATGCCAAAAATAAA 59.846 34.615 16.68 0.00 34.29 1.40
211 212 5.655974 TCTGGTAGATGCATGCCAAAAATAA 59.344 36.000 16.68 0.00 34.29 1.40
212 213 5.199723 TCTGGTAGATGCATGCCAAAAATA 58.800 37.500 16.68 0.00 34.29 1.40
213 214 4.025360 TCTGGTAGATGCATGCCAAAAAT 58.975 39.130 16.68 0.26 34.29 1.82
214 215 3.429492 TCTGGTAGATGCATGCCAAAAA 58.571 40.909 16.68 0.00 34.29 1.94
215 216 3.084536 TCTGGTAGATGCATGCCAAAA 57.915 42.857 16.68 0.00 34.29 2.44
216 217 2.804986 TCTGGTAGATGCATGCCAAA 57.195 45.000 16.68 0.00 34.29 3.28
217 218 2.578786 CATCTGGTAGATGCATGCCAA 58.421 47.619 16.68 0.00 44.69 4.52
218 219 2.265589 CATCTGGTAGATGCATGCCA 57.734 50.000 16.68 8.98 44.69 4.92
226 227 3.296854 TGTTAGGCGTCATCTGGTAGAT 58.703 45.455 0.00 0.00 34.74 1.98
227 228 2.688446 CTGTTAGGCGTCATCTGGTAGA 59.312 50.000 0.00 0.00 0.00 2.59
228 229 2.799917 GCTGTTAGGCGTCATCTGGTAG 60.800 54.545 0.00 0.00 0.00 3.18
229 230 1.136305 GCTGTTAGGCGTCATCTGGTA 59.864 52.381 0.00 0.00 0.00 3.25
230 231 0.108138 GCTGTTAGGCGTCATCTGGT 60.108 55.000 0.00 0.00 0.00 4.00
231 232 0.811616 GGCTGTTAGGCGTCATCTGG 60.812 60.000 0.00 0.00 0.00 3.86
232 233 2.682893 GGCTGTTAGGCGTCATCTG 58.317 57.895 0.00 0.00 0.00 2.90
240 241 1.099689 TTTTATGGCGGCTGTTAGGC 58.900 50.000 11.43 0.00 37.44 3.93
241 242 2.088423 TGTTTTATGGCGGCTGTTAGG 58.912 47.619 11.43 0.00 0.00 2.69
242 243 3.427503 CCTTGTTTTATGGCGGCTGTTAG 60.428 47.826 11.43 0.00 0.00 2.34
243 244 2.490115 CCTTGTTTTATGGCGGCTGTTA 59.510 45.455 11.43 0.00 0.00 2.41
244 245 1.272212 CCTTGTTTTATGGCGGCTGTT 59.728 47.619 11.43 0.00 0.00 3.16
245 246 0.887933 CCTTGTTTTATGGCGGCTGT 59.112 50.000 11.43 1.10 0.00 4.40
246 247 0.458370 GCCTTGTTTTATGGCGGCTG 60.458 55.000 11.43 0.00 39.49 4.85
247 248 1.890174 GCCTTGTTTTATGGCGGCT 59.110 52.632 11.43 0.00 39.49 5.52
248 249 4.494811 GCCTTGTTTTATGGCGGC 57.505 55.556 0.00 0.00 39.49 6.53
252 253 7.865706 AGACTATGTTAGCCTTGTTTTATGG 57.134 36.000 0.00 0.00 0.00 2.74
256 257 7.707035 CGAGATAGACTATGTTAGCCTTGTTTT 59.293 37.037 0.00 0.00 0.00 2.43
257 258 7.068348 TCGAGATAGACTATGTTAGCCTTGTTT 59.932 37.037 0.00 0.00 0.00 2.83
258 259 6.546403 TCGAGATAGACTATGTTAGCCTTGTT 59.454 38.462 0.00 0.00 0.00 2.83
259 260 6.062749 TCGAGATAGACTATGTTAGCCTTGT 58.937 40.000 0.00 0.00 0.00 3.16
260 261 6.561737 TCGAGATAGACTATGTTAGCCTTG 57.438 41.667 0.00 0.00 0.00 3.61
261 262 6.376018 GGATCGAGATAGACTATGTTAGCCTT 59.624 42.308 0.00 0.00 0.00 4.35
262 263 5.883673 GGATCGAGATAGACTATGTTAGCCT 59.116 44.000 0.00 0.00 0.00 4.58
263 264 5.220700 CGGATCGAGATAGACTATGTTAGCC 60.221 48.000 0.00 0.56 0.00 3.93
264 265 5.220700 CCGGATCGAGATAGACTATGTTAGC 60.221 48.000 0.00 0.00 0.00 3.09
265 266 6.107343 TCCGGATCGAGATAGACTATGTTAG 58.893 44.000 0.00 0.00 0.00 2.34
266 267 6.046290 TCCGGATCGAGATAGACTATGTTA 57.954 41.667 0.00 0.00 0.00 2.41
267 268 4.907809 TCCGGATCGAGATAGACTATGTT 58.092 43.478 0.00 0.00 0.00 2.71
268 269 4.223255 TCTCCGGATCGAGATAGACTATGT 59.777 45.833 3.57 0.00 33.91 2.29
269 270 4.569162 GTCTCCGGATCGAGATAGACTATG 59.431 50.000 3.57 0.00 40.89 2.23
270 271 4.468510 AGTCTCCGGATCGAGATAGACTAT 59.531 45.833 14.95 0.00 41.30 2.12
271 272 3.833650 AGTCTCCGGATCGAGATAGACTA 59.166 47.826 14.95 0.00 41.30 2.59
272 273 2.635915 AGTCTCCGGATCGAGATAGACT 59.364 50.000 3.57 8.88 40.89 3.24
273 274 3.048337 AGTCTCCGGATCGAGATAGAC 57.952 52.381 3.57 6.34 40.89 2.59
274 275 3.403968 CAAGTCTCCGGATCGAGATAGA 58.596 50.000 3.57 0.00 40.89 1.98
275 276 2.486203 CCAAGTCTCCGGATCGAGATAG 59.514 54.545 3.57 0.00 40.89 2.08
276 277 2.158652 ACCAAGTCTCCGGATCGAGATA 60.159 50.000 3.57 0.00 40.89 1.98
277 278 1.323412 CCAAGTCTCCGGATCGAGAT 58.677 55.000 3.57 0.00 40.89 2.75
278 279 0.034380 ACCAAGTCTCCGGATCGAGA 60.034 55.000 3.57 0.00 36.53 4.04
279 280 0.382515 GACCAAGTCTCCGGATCGAG 59.617 60.000 3.57 0.00 0.00 4.04
280 281 0.323087 TGACCAAGTCTCCGGATCGA 60.323 55.000 3.57 0.00 33.15 3.59
281 282 0.530744 TTGACCAAGTCTCCGGATCG 59.469 55.000 3.57 0.00 33.15 3.69
282 283 1.736032 CGTTGACCAAGTCTCCGGATC 60.736 57.143 3.57 0.90 33.15 3.36
283 284 0.246635 CGTTGACCAAGTCTCCGGAT 59.753 55.000 3.57 0.00 33.15 4.18
284 285 1.663739 CGTTGACCAAGTCTCCGGA 59.336 57.895 2.93 2.93 33.15 5.14
285 286 1.374252 CCGTTGACCAAGTCTCCGG 60.374 63.158 0.00 0.00 38.95 5.14
286 287 0.246635 ATCCGTTGACCAAGTCTCCG 59.753 55.000 0.00 0.00 33.15 4.63
287 288 1.676014 CCATCCGTTGACCAAGTCTCC 60.676 57.143 0.00 0.00 33.15 3.71
288 289 1.002087 ACCATCCGTTGACCAAGTCTC 59.998 52.381 0.00 0.00 33.15 3.36
289 290 1.056660 ACCATCCGTTGACCAAGTCT 58.943 50.000 0.00 0.00 33.15 3.24
290 291 1.156736 CACCATCCGTTGACCAAGTC 58.843 55.000 0.00 0.00 0.00 3.01
291 292 0.762418 TCACCATCCGTTGACCAAGT 59.238 50.000 0.00 0.00 0.00 3.16
292 293 1.442769 CTCACCATCCGTTGACCAAG 58.557 55.000 0.00 0.00 0.00 3.61
293 294 0.036164 CCTCACCATCCGTTGACCAA 59.964 55.000 0.00 0.00 0.00 3.67
294 295 1.125093 ACCTCACCATCCGTTGACCA 61.125 55.000 0.00 0.00 0.00 4.02
295 296 0.391263 GACCTCACCATCCGTTGACC 60.391 60.000 0.00 0.00 0.00 4.02
296 297 0.608640 AGACCTCACCATCCGTTGAC 59.391 55.000 0.00 0.00 0.00 3.18
297 298 1.001974 CAAGACCTCACCATCCGTTGA 59.998 52.381 0.00 0.00 0.00 3.18
298 299 1.442769 CAAGACCTCACCATCCGTTG 58.557 55.000 0.00 0.00 0.00 4.10
299 300 0.324943 CCAAGACCTCACCATCCGTT 59.675 55.000 0.00 0.00 0.00 4.44
300 301 0.836400 ACCAAGACCTCACCATCCGT 60.836 55.000 0.00 0.00 0.00 4.69
301 302 0.108138 GACCAAGACCTCACCATCCG 60.108 60.000 0.00 0.00 0.00 4.18
302 303 1.280457 AGACCAAGACCTCACCATCC 58.720 55.000 0.00 0.00 0.00 3.51
303 304 3.964031 AGATAGACCAAGACCTCACCATC 59.036 47.826 0.00 0.00 0.00 3.51
304 305 4.000928 AGATAGACCAAGACCTCACCAT 57.999 45.455 0.00 0.00 0.00 3.55
305 306 3.474798 AGATAGACCAAGACCTCACCA 57.525 47.619 0.00 0.00 0.00 4.17
306 307 4.282195 CCATAGATAGACCAAGACCTCACC 59.718 50.000 0.00 0.00 0.00 4.02
307 308 4.896482 ACCATAGATAGACCAAGACCTCAC 59.104 45.833 0.00 0.00 0.00 3.51
308 309 5.144159 ACCATAGATAGACCAAGACCTCA 57.856 43.478 0.00 0.00 0.00 3.86
309 310 6.069331 TGTACCATAGATAGACCAAGACCTC 58.931 44.000 0.00 0.00 0.00 3.85
310 311 6.027025 TGTACCATAGATAGACCAAGACCT 57.973 41.667 0.00 0.00 0.00 3.85
311 312 6.267928 ACATGTACCATAGATAGACCAAGACC 59.732 42.308 0.00 0.00 0.00 3.85
312 313 7.291411 ACATGTACCATAGATAGACCAAGAC 57.709 40.000 0.00 0.00 0.00 3.01
313 314 7.202001 CCAACATGTACCATAGATAGACCAAGA 60.202 40.741 0.00 0.00 0.00 3.02
314 315 6.931281 CCAACATGTACCATAGATAGACCAAG 59.069 42.308 0.00 0.00 0.00 3.61
315 316 6.613679 TCCAACATGTACCATAGATAGACCAA 59.386 38.462 0.00 0.00 0.00 3.67
316 317 6.041637 GTCCAACATGTACCATAGATAGACCA 59.958 42.308 0.00 0.00 0.00 4.02
317 318 6.267928 AGTCCAACATGTACCATAGATAGACC 59.732 42.308 0.00 0.00 0.00 3.85
318 319 7.291411 AGTCCAACATGTACCATAGATAGAC 57.709 40.000 0.00 0.00 0.00 2.59
319 320 9.025041 CATAGTCCAACATGTACCATAGATAGA 57.975 37.037 0.00 0.00 0.00 1.98
320 321 7.761704 GCATAGTCCAACATGTACCATAGATAG 59.238 40.741 0.00 0.00 0.00 2.08
321 322 7.454694 AGCATAGTCCAACATGTACCATAGATA 59.545 37.037 0.00 0.00 0.00 1.98
322 323 6.270927 AGCATAGTCCAACATGTACCATAGAT 59.729 38.462 0.00 0.00 0.00 1.98
323 324 5.602561 AGCATAGTCCAACATGTACCATAGA 59.397 40.000 0.00 0.00 0.00 1.98
324 325 5.858381 AGCATAGTCCAACATGTACCATAG 58.142 41.667 0.00 0.00 0.00 2.23
325 326 5.887214 AGCATAGTCCAACATGTACCATA 57.113 39.130 0.00 0.00 0.00 2.74
326 327 4.778213 AGCATAGTCCAACATGTACCAT 57.222 40.909 0.00 0.00 0.00 3.55
327 328 4.225042 AGAAGCATAGTCCAACATGTACCA 59.775 41.667 0.00 0.00 0.00 3.25
328 329 4.770795 AGAAGCATAGTCCAACATGTACC 58.229 43.478 0.00 0.00 0.00 3.34
329 330 5.665459 AGAGAAGCATAGTCCAACATGTAC 58.335 41.667 0.00 0.00 0.00 2.90
330 331 5.658634 AGAGAGAAGCATAGTCCAACATGTA 59.341 40.000 0.00 0.00 0.00 2.29
331 332 4.469227 AGAGAGAAGCATAGTCCAACATGT 59.531 41.667 0.00 0.00 0.00 3.21
332 333 5.021033 AGAGAGAAGCATAGTCCAACATG 57.979 43.478 0.00 0.00 0.00 3.21
333 334 4.100808 GGAGAGAGAAGCATAGTCCAACAT 59.899 45.833 0.00 0.00 0.00 2.71
334 335 3.449018 GGAGAGAGAAGCATAGTCCAACA 59.551 47.826 0.00 0.00 0.00 3.33
335 336 3.181470 GGGAGAGAGAAGCATAGTCCAAC 60.181 52.174 0.00 0.00 0.00 3.77
336 337 3.034635 GGGAGAGAGAAGCATAGTCCAA 58.965 50.000 0.00 0.00 0.00 3.53
337 338 2.672098 GGGAGAGAGAAGCATAGTCCA 58.328 52.381 0.00 0.00 0.00 4.02
338 339 1.967779 GGGGAGAGAGAAGCATAGTCC 59.032 57.143 0.00 0.00 0.00 3.85
339 340 2.364002 GTGGGGAGAGAGAAGCATAGTC 59.636 54.545 0.00 0.00 0.00 2.59
340 341 2.023501 AGTGGGGAGAGAGAAGCATAGT 60.024 50.000 0.00 0.00 0.00 2.12
341 342 2.364970 CAGTGGGGAGAGAGAAGCATAG 59.635 54.545 0.00 0.00 0.00 2.23
342 343 2.023984 TCAGTGGGGAGAGAGAAGCATA 60.024 50.000 0.00 0.00 0.00 3.14
343 344 1.202330 CAGTGGGGAGAGAGAAGCAT 58.798 55.000 0.00 0.00 0.00 3.79
344 345 0.115152 TCAGTGGGGAGAGAGAAGCA 59.885 55.000 0.00 0.00 0.00 3.91
345 346 1.412343 GATCAGTGGGGAGAGAGAAGC 59.588 57.143 0.00 0.00 0.00 3.86
346 347 2.744760 TGATCAGTGGGGAGAGAGAAG 58.255 52.381 0.00 0.00 0.00 2.85
347 348 2.928036 TGATCAGTGGGGAGAGAGAA 57.072 50.000 0.00 0.00 0.00 2.87
348 349 2.928036 TTGATCAGTGGGGAGAGAGA 57.072 50.000 0.00 0.00 0.00 3.10
349 350 3.806380 CAATTGATCAGTGGGGAGAGAG 58.194 50.000 0.00 0.00 0.00 3.20
350 351 2.092753 GCAATTGATCAGTGGGGAGAGA 60.093 50.000 10.34 0.00 0.00 3.10
351 352 2.092538 AGCAATTGATCAGTGGGGAGAG 60.093 50.000 10.34 0.00 0.00 3.20
352 353 1.918262 AGCAATTGATCAGTGGGGAGA 59.082 47.619 10.34 0.00 0.00 3.71
353 354 2.431954 AGCAATTGATCAGTGGGGAG 57.568 50.000 10.34 0.00 0.00 4.30
354 355 2.905415 AAGCAATTGATCAGTGGGGA 57.095 45.000 10.34 0.00 0.00 4.81
355 356 3.094572 AGAAAGCAATTGATCAGTGGGG 58.905 45.455 10.34 0.00 0.00 4.96
356 357 3.129988 GGAGAAAGCAATTGATCAGTGGG 59.870 47.826 10.34 0.00 0.00 4.61
357 358 4.015084 AGGAGAAAGCAATTGATCAGTGG 58.985 43.478 10.34 0.00 0.00 4.00
358 359 5.640189 AAGGAGAAAGCAATTGATCAGTG 57.360 39.130 10.34 0.00 0.00 3.66
359 360 5.771666 TCAAAGGAGAAAGCAATTGATCAGT 59.228 36.000 10.34 0.00 0.00 3.41
360 361 6.091437 GTCAAAGGAGAAAGCAATTGATCAG 58.909 40.000 10.34 0.00 0.00 2.90
361 362 5.047802 GGTCAAAGGAGAAAGCAATTGATCA 60.048 40.000 10.34 0.00 30.32 2.92
362 363 5.047802 TGGTCAAAGGAGAAAGCAATTGATC 60.048 40.000 10.34 3.96 0.00 2.92
363 364 4.834496 TGGTCAAAGGAGAAAGCAATTGAT 59.166 37.500 10.34 0.00 0.00 2.57
364 365 4.214310 TGGTCAAAGGAGAAAGCAATTGA 58.786 39.130 10.34 0.00 0.00 2.57
365 366 4.589216 TGGTCAAAGGAGAAAGCAATTG 57.411 40.909 0.00 0.00 0.00 2.32
366 367 5.612725 TTTGGTCAAAGGAGAAAGCAATT 57.387 34.783 0.00 0.00 0.00 2.32
367 368 5.813513 ATTTGGTCAAAGGAGAAAGCAAT 57.186 34.783 2.55 0.00 33.32 3.56
368 369 5.612725 AATTTGGTCAAAGGAGAAAGCAA 57.387 34.783 2.55 0.00 33.32 3.91
369 370 5.612725 AAATTTGGTCAAAGGAGAAAGCA 57.387 34.783 2.55 0.00 33.32 3.91
370 371 6.316140 ACAAAAATTTGGTCAAAGGAGAAAGC 59.684 34.615 10.38 0.00 42.34 3.51
371 372 7.765819 AGACAAAAATTTGGTCAAAGGAGAAAG 59.234 33.333 14.94 0.00 42.34 2.62
372 373 7.619965 AGACAAAAATTTGGTCAAAGGAGAAA 58.380 30.769 14.94 0.00 42.34 2.52
373 374 7.181569 AGACAAAAATTTGGTCAAAGGAGAA 57.818 32.000 14.94 0.00 42.34 2.87
374 375 6.459573 CGAGACAAAAATTTGGTCAAAGGAGA 60.460 38.462 14.94 0.00 42.34 3.71
375 376 5.687285 CGAGACAAAAATTTGGTCAAAGGAG 59.313 40.000 14.94 0.00 42.34 3.69
376 377 5.358442 TCGAGACAAAAATTTGGTCAAAGGA 59.642 36.000 14.94 4.30 42.34 3.36
377 378 5.458779 GTCGAGACAAAAATTTGGTCAAAGG 59.541 40.000 14.94 2.23 42.34 3.11
378 379 6.033341 TGTCGAGACAAAAATTTGGTCAAAG 58.967 36.000 14.94 6.24 42.34 2.77
379 380 5.955488 TGTCGAGACAAAAATTTGGTCAAA 58.045 33.333 14.94 0.00 42.34 2.69
380 381 5.568685 TGTCGAGACAAAAATTTGGTCAA 57.431 34.783 14.94 0.00 42.34 3.18
381 382 5.766150 ATGTCGAGACAAAAATTTGGTCA 57.234 34.783 14.94 0.00 45.41 4.02
382 383 6.801862 CCTAATGTCGAGACAAAAATTTGGTC 59.198 38.462 10.15 5.12 45.41 4.02
383 384 6.264518 ACCTAATGTCGAGACAAAAATTTGGT 59.735 34.615 10.15 12.27 45.41 3.67
384 385 6.677913 ACCTAATGTCGAGACAAAAATTTGG 58.322 36.000 10.15 11.72 45.41 3.28
385 386 8.574196 AAACCTAATGTCGAGACAAAAATTTG 57.426 30.769 10.15 4.40 45.41 2.32
388 389 9.840427 CAATAAACCTAATGTCGAGACAAAAAT 57.160 29.630 10.15 0.61 45.41 1.82
389 390 8.293867 CCAATAAACCTAATGTCGAGACAAAAA 58.706 33.333 10.15 0.00 45.41 1.94
390 391 7.662258 TCCAATAAACCTAATGTCGAGACAAAA 59.338 33.333 10.15 0.89 45.41 2.44
391 392 7.162761 TCCAATAAACCTAATGTCGAGACAAA 58.837 34.615 10.15 1.24 45.41 2.83
392 393 6.703319 TCCAATAAACCTAATGTCGAGACAA 58.297 36.000 10.15 0.00 45.41 3.18
393 394 6.288941 TCCAATAAACCTAATGTCGAGACA 57.711 37.500 8.48 8.48 46.44 3.41
394 395 7.210873 AGATCCAATAAACCTAATGTCGAGAC 58.789 38.462 0.00 0.00 0.00 3.36
395 396 7.361457 AGATCCAATAAACCTAATGTCGAGA 57.639 36.000 0.00 0.00 0.00 4.04
396 397 7.096023 CGAAGATCCAATAAACCTAATGTCGAG 60.096 40.741 0.00 0.00 0.00 4.04
397 398 6.700081 CGAAGATCCAATAAACCTAATGTCGA 59.300 38.462 0.00 0.00 0.00 4.20
398 399 6.479001 ACGAAGATCCAATAAACCTAATGTCG 59.521 38.462 0.00 0.00 0.00 4.35
399 400 7.041984 GGACGAAGATCCAATAAACCTAATGTC 60.042 40.741 0.00 0.00 38.77 3.06
400 401 6.766467 GGACGAAGATCCAATAAACCTAATGT 59.234 38.462 0.00 0.00 38.77 2.71
401 402 6.765989 TGGACGAAGATCCAATAAACCTAATG 59.234 38.462 0.00 0.00 46.08 1.90
402 403 6.895782 TGGACGAAGATCCAATAAACCTAAT 58.104 36.000 0.00 0.00 46.08 1.73
403 404 6.302535 TGGACGAAGATCCAATAAACCTAA 57.697 37.500 0.00 0.00 46.08 2.69
404 405 5.943349 TGGACGAAGATCCAATAAACCTA 57.057 39.130 0.00 0.00 46.08 3.08
405 406 4.837093 TGGACGAAGATCCAATAAACCT 57.163 40.909 0.00 0.00 46.08 3.50
413 414 1.186200 CTCTGGTGGACGAAGATCCA 58.814 55.000 0.00 0.00 46.92 3.41
414 415 1.135333 GACTCTGGTGGACGAAGATCC 59.865 57.143 0.00 0.00 39.45 3.36
415 416 1.135333 GGACTCTGGTGGACGAAGATC 59.865 57.143 0.00 0.00 0.00 2.75
416 417 1.187087 GGACTCTGGTGGACGAAGAT 58.813 55.000 0.00 0.00 0.00 2.40
417 418 0.898789 GGGACTCTGGTGGACGAAGA 60.899 60.000 0.00 0.00 0.00 2.87
418 419 0.900647 AGGGACTCTGGTGGACGAAG 60.901 60.000 0.00 0.00 0.00 3.79
419 420 1.155390 AGGGACTCTGGTGGACGAA 59.845 57.895 0.00 0.00 0.00 3.85
420 421 2.851801 AGGGACTCTGGTGGACGA 59.148 61.111 0.00 0.00 0.00 4.20
441 442 4.104066 GGGAGAAAATCGAGTCGTAGAAC 58.896 47.826 13.12 3.35 39.69 3.01
446 447 2.931320 GCAAGGGAGAAAATCGAGTCGT 60.931 50.000 13.12 0.00 0.00 4.34
450 451 2.813754 TGTTGCAAGGGAGAAAATCGAG 59.186 45.455 0.00 0.00 0.00 4.04
565 566 9.722056 ATTTGTATTCATATTTCAAGCTCGAAC 57.278 29.630 0.00 0.00 0.00 3.95
750 759 1.673033 GGACATGTGTCGGTTCCTCAG 60.673 57.143 1.15 0.00 45.65 3.35
755 764 1.429463 GAGTGGACATGTGTCGGTTC 58.571 55.000 1.15 1.50 45.65 3.62
758 767 1.446099 CGGAGTGGACATGTGTCGG 60.446 63.158 1.15 0.00 45.65 4.79
803 812 1.069258 GTCGGCACCCATACTAGCC 59.931 63.158 0.00 0.00 43.61 3.93
804 813 1.069258 GGTCGGCACCCATACTAGC 59.931 63.158 0.00 0.00 36.54 3.42
1264 1273 3.044305 GCGCGCTCTCACCAAACT 61.044 61.111 26.67 0.00 0.00 2.66
1303 1339 2.205074 ACGCAGATCAATCATCGGAAC 58.795 47.619 0.00 0.00 36.50 3.62
1307 1359 4.526970 AAGAAACGCAGATCAATCATCG 57.473 40.909 0.00 0.00 36.50 3.84
1397 1449 4.033776 CTGCTTCCCCTTGGCGGA 62.034 66.667 0.00 0.00 34.61 5.54
1485 1537 2.030981 GTCTCTTATCTTACCTCGCCGG 60.031 54.545 0.00 0.00 39.35 6.13
1538 1597 0.320858 TTTGGGCGATGTCAGCGTTA 60.321 50.000 12.66 0.00 35.00 3.18
1545 1604 3.995199 TCTAGATCATTTGGGCGATGTC 58.005 45.455 0.00 0.00 0.00 3.06
1554 1613 3.332919 CCTCCCGCATCTAGATCATTTG 58.667 50.000 1.03 0.00 0.00 2.32
1952 2030 5.125578 TGGCACCAAAACCAAAAATAAAACC 59.874 36.000 0.00 0.00 31.46 3.27
1969 2056 1.982395 CCTCGTAGACCTGGCACCA 60.982 63.158 0.00 0.00 0.00 4.17
2104 2191 6.647334 TGACTTGGATTGTTGCTGATTAAA 57.353 33.333 0.00 0.00 0.00 1.52
2282 2373 2.437651 TCGATCCATGGCCAATCAAGTA 59.562 45.455 10.96 0.00 0.00 2.24
2283 2374 1.212688 TCGATCCATGGCCAATCAAGT 59.787 47.619 10.96 0.00 0.00 3.16
2284 2375 1.971481 TCGATCCATGGCCAATCAAG 58.029 50.000 10.96 0.00 0.00 3.02
2285 2376 2.158638 TGATCGATCCATGGCCAATCAA 60.159 45.455 22.31 0.00 0.00 2.57
2286 2377 1.420891 TGATCGATCCATGGCCAATCA 59.579 47.619 22.31 10.02 0.00 2.57
2287 2378 2.189594 TGATCGATCCATGGCCAATC 57.810 50.000 22.31 7.82 0.00 2.67
2288 2379 2.443416 CATGATCGATCCATGGCCAAT 58.557 47.619 22.31 0.00 38.12 3.16
2548 2640 1.333347 CGTCGAATCCTAGAGACAGCG 60.333 57.143 0.00 0.00 33.56 5.18
2961 3063 3.010420 GTGAAGGAACTCCATAACCTGC 58.990 50.000 0.00 0.00 38.49 4.85
3122 3227 9.294614 CTTATATTAGTTTACGGAGGGAGTACT 57.705 37.037 0.00 0.00 0.00 2.73
3123 3228 9.289782 TCTTATATTAGTTTACGGAGGGAGTAC 57.710 37.037 0.00 0.00 0.00 2.73
3124 3229 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
3125 3230 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
3126 3231 7.039923 TGCTCTTATATTAGTTTACGGAGGGAG 60.040 40.741 0.00 0.00 0.00 4.30
3127 3232 6.779049 TGCTCTTATATTAGTTTACGGAGGGA 59.221 38.462 0.00 0.00 0.00 4.20
3128 3233 6.989659 TGCTCTTATATTAGTTTACGGAGGG 58.010 40.000 0.00 0.00 0.00 4.30
3129 3234 9.490379 AAATGCTCTTATATTAGTTTACGGAGG 57.510 33.333 0.00 0.00 0.00 4.30
3156 3261 9.733219 GCGTTTAGATCACTACTTTAGTATTCT 57.267 33.333 0.00 0.00 37.23 2.40
3157 3262 9.733219 AGCGTTTAGATCACTACTTTAGTATTC 57.267 33.333 0.00 0.00 37.23 1.75
3158 3263 9.733219 GAGCGTTTAGATCACTACTTTAGTATT 57.267 33.333 0.00 0.00 37.23 1.89
3159 3264 9.122779 AGAGCGTTTAGATCACTACTTTAGTAT 57.877 33.333 0.00 0.00 37.82 2.12
3160 3265 8.503458 AGAGCGTTTAGATCACTACTTTAGTA 57.497 34.615 0.00 0.00 37.82 1.82
3161 3266 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
3162 3267 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
3178 3283 9.106070 CCCTTTGTAAACTAATATAAGAGCGTT 57.894 33.333 0.00 0.00 0.00 4.84
3179 3284 8.480501 TCCCTTTGTAAACTAATATAAGAGCGT 58.519 33.333 0.00 0.00 0.00 5.07
3180 3285 8.882415 TCCCTTTGTAAACTAATATAAGAGCG 57.118 34.615 0.00 0.00 0.00 5.03
3181 3286 9.833917 ACTCCCTTTGTAAACTAATATAAGAGC 57.166 33.333 0.00 0.00 0.00 4.09
3189 3294 9.636789 AACAAACTACTCCCTTTGTAAACTAAT 57.363 29.630 0.00 0.00 39.21 1.73
3191 3296 9.768662 CTAACAAACTACTCCCTTTGTAAACTA 57.231 33.333 0.00 0.00 39.21 2.24
3192 3297 7.228108 GCTAACAAACTACTCCCTTTGTAAACT 59.772 37.037 0.00 0.00 39.21 2.66
3193 3298 7.228108 AGCTAACAAACTACTCCCTTTGTAAAC 59.772 37.037 0.00 0.00 39.21 2.01
3194 3299 7.284820 AGCTAACAAACTACTCCCTTTGTAAA 58.715 34.615 0.00 0.00 39.21 2.01
3195 3300 6.834107 AGCTAACAAACTACTCCCTTTGTAA 58.166 36.000 0.00 0.00 39.21 2.41
3196 3301 6.429521 AGCTAACAAACTACTCCCTTTGTA 57.570 37.500 0.00 0.00 39.21 2.41
3197 3302 5.306114 AGCTAACAAACTACTCCCTTTGT 57.694 39.130 0.00 0.00 41.36 2.83
3198 3303 7.923414 ATTAGCTAACAAACTACTCCCTTTG 57.077 36.000 8.70 0.00 34.18 2.77
3199 3304 8.793592 CAAATTAGCTAACAAACTACTCCCTTT 58.206 33.333 8.70 0.00 0.00 3.11
3200 3305 7.393515 CCAAATTAGCTAACAAACTACTCCCTT 59.606 37.037 8.70 0.00 0.00 3.95
3201 3306 6.884836 CCAAATTAGCTAACAAACTACTCCCT 59.115 38.462 8.70 0.00 0.00 4.20
3202 3307 6.657966 ACCAAATTAGCTAACAAACTACTCCC 59.342 38.462 8.70 0.00 0.00 4.30
3203 3308 7.683437 ACCAAATTAGCTAACAAACTACTCC 57.317 36.000 8.70 0.00 0.00 3.85
3204 3309 8.565416 ACAACCAAATTAGCTAACAAACTACTC 58.435 33.333 8.70 0.00 0.00 2.59
3233 3338 7.574779 GCGATGGTTATTACATGCATGGAATAA 60.575 37.037 37.04 37.04 46.16 1.40
3255 3361 1.887198 CGGGAACTAGACATAGGCGAT 59.113 52.381 0.00 0.00 32.90 4.58
3264 3370 5.349817 GGTTAACTAAAAGCGGGAACTAGAC 59.650 44.000 5.42 0.00 0.00 2.59
3285 3391 2.421248 CCAAACCCATGCAACAAAGGTT 60.421 45.455 0.00 0.00 42.55 3.50
3398 3506 3.189568 TGGTATGGCCAGCAATCAC 57.810 52.632 13.05 1.68 43.61 3.06
3492 3602 7.081526 ACATGAAGTAGCATTTGATCTTCAC 57.918 36.000 0.00 0.00 44.20 3.18
3595 3705 7.389607 ACAACTACCACATAACCATTACAAGAC 59.610 37.037 0.00 0.00 0.00 3.01
3626 3736 8.006298 AGTCATGAACAAGTGGAATACAAAAA 57.994 30.769 0.00 0.00 0.00 1.94
3645 3755 5.176223 GCAAGAAAATGTGGTCAAAGTCATG 59.824 40.000 0.00 0.00 0.00 3.07
3707 3817 3.645268 AACCCCAAGCCTCCGCATC 62.645 63.158 0.00 0.00 37.52 3.91
3712 3822 0.178961 AGTTGAAACCCCAAGCCTCC 60.179 55.000 0.00 0.00 0.00 4.30
3716 3826 1.704641 AGGAAGTTGAAACCCCAAGC 58.295 50.000 5.40 0.00 0.00 4.01
3771 3881 1.647346 CCGCCAAAATCACGCTAGTA 58.353 50.000 0.00 0.00 0.00 1.82
3789 3899 2.034221 AGCCAAAACGCTCCTCCC 59.966 61.111 0.00 0.00 32.06 4.30
3815 3925 2.839486 TTGTCATCCGGGAGCATATC 57.161 50.000 0.00 0.00 0.00 1.63
3888 4002 2.495409 TGTTTGCGAGACTAACACGA 57.505 45.000 0.00 0.00 38.77 4.35
3905 4019 3.676172 CGCATGAAATTTGTCAAGCATGT 59.324 39.130 13.63 0.00 41.23 3.21
3923 4037 3.490759 CGCTGCTCCGTTTCGCAT 61.491 61.111 0.00 0.00 35.32 4.73
3931 4045 3.777925 CGAAACACCGCTGCTCCG 61.778 66.667 0.00 0.00 0.00 4.63
3963 4077 5.365314 ACACCAAATGTCACCCTAATTTGTT 59.635 36.000 6.60 0.00 36.54 2.83
3964 4078 4.898861 ACACCAAATGTCACCCTAATTTGT 59.101 37.500 6.60 0.00 36.54 2.83
3995 4109 6.690194 TTGGCTTGTGCAATAAACAAAAAT 57.310 29.167 0.00 0.00 41.91 1.82
3996 4110 6.500684 TTTGGCTTGTGCAATAAACAAAAA 57.499 29.167 0.00 0.00 41.91 1.94
4001 4115 5.671742 ATGTTTTGGCTTGTGCAATAAAC 57.328 34.783 0.00 0.00 41.91 2.01
4004 4118 6.203723 GGTTAAATGTTTTGGCTTGTGCAATA 59.796 34.615 0.00 0.00 41.91 1.90
4005 4119 5.008514 GGTTAAATGTTTTGGCTTGTGCAAT 59.991 36.000 0.00 0.00 41.91 3.56
4006 4120 4.333926 GGTTAAATGTTTTGGCTTGTGCAA 59.666 37.500 0.00 0.00 41.91 4.08
4007 4121 3.873952 GGTTAAATGTTTTGGCTTGTGCA 59.126 39.130 0.00 0.00 41.91 4.57
4016 4130 6.256757 TCGAGGCAAAAAGGTTAAATGTTTTG 59.743 34.615 11.58 11.58 41.64 2.44
4021 4135 7.420184 AATTTCGAGGCAAAAAGGTTAAATG 57.580 32.000 0.00 0.00 0.00 2.32
4022 4136 7.519809 GCAAATTTCGAGGCAAAAAGGTTAAAT 60.520 33.333 0.00 0.00 0.00 1.40
4028 4142 3.793776 GCAAATTTCGAGGCAAAAAGG 57.206 42.857 0.00 0.00 0.00 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.