Multiple sequence alignment - TraesCS7D01G182200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G182200 chr7D 100.000 4436 0 0 1 4436 135766089 135761654 0.000000e+00 8192.0
1 TraesCS7D01G182200 chr7D 99.093 3307 18 2 376 3670 135767329 135770635 0.000000e+00 5930.0
2 TraesCS7D01G182200 chr7D 98.851 3307 26 2 376 3670 23561318 23564624 0.000000e+00 5886.0
3 TraesCS7D01G182200 chr7D 98.639 3307 32 3 376 3670 14172774 14169469 0.000000e+00 5845.0
4 TraesCS7D01G182200 chr7D 98.458 3307 38 3 376 3670 400293439 400290134 0.000000e+00 5812.0
5 TraesCS7D01G182200 chr7D 83.854 384 48 9 1 377 135437817 135437441 1.960000e-93 353.0
6 TraesCS7D01G182200 chr7D 89.139 267 26 1 3694 3960 135437427 135437164 3.310000e-86 329.0
7 TraesCS7D01G182200 chr2D 98.760 3307 29 2 376 3670 35063256 35059950 0.000000e+00 5869.0
8 TraesCS7D01G182200 chr2D 98.517 3305 34 4 378 3670 70661127 70657826 0.000000e+00 5818.0
9 TraesCS7D01G182200 chr5D 98.639 3306 33 2 377 3670 460676228 460679533 0.000000e+00 5845.0
10 TraesCS7D01G182200 chr6D 98.310 3314 34 6 376 3669 402532977 402529666 0.000000e+00 5790.0
11 TraesCS7D01G182200 chr6B 97.884 3308 57 3 376 3670 9820631 9823938 0.000000e+00 5709.0
12 TraesCS7D01G182200 chr6B 96.771 3314 75 9 376 3671 719770425 719767126 0.000000e+00 5498.0
13 TraesCS7D01G182200 chrUn 98.370 2638 29 3 359 2983 95716931 95719567 0.000000e+00 4621.0
14 TraesCS7D01G182200 chr7B 96.335 382 13 1 1 382 97673671 97673291 1.050000e-175 627.0
15 TraesCS7D01G182200 chr7B 95.588 340 15 0 3671 4010 97673304 97672965 3.020000e-151 545.0
16 TraesCS7D01G182200 chr7B 83.812 383 50 10 1 377 97376880 97376504 1.960000e-93 353.0
17 TraesCS7D01G182200 chr7B 77.873 583 86 28 3673 4247 97376103 97375556 5.540000e-84 322.0
18 TraesCS7D01G182200 chr7B 95.833 96 3 1 4074 4168 97664369 97664274 2.140000e-33 154.0
19 TraesCS7D01G182200 chr7A 95.122 369 5 3 372 728 632039273 632038906 1.790000e-158 569.0
20 TraesCS7D01G182200 chr7A 93.313 329 22 0 47 375 134704447 134704119 1.850000e-133 486.0
21 TraesCS7D01G182200 chr7A 87.285 291 28 7 3673 3960 134571120 134570836 1.540000e-84 324.0
22 TraesCS7D01G182200 chr7A 82.461 382 56 10 1 377 134571488 134571113 1.540000e-84 324.0
23 TraesCS7D01G182200 chr7A 83.281 317 51 2 3671 3986 134570714 134570399 1.560000e-74 291.0
24 TraesCS7D01G182200 chr7A 92.683 41 3 0 3671 3711 134704126 134704086 4.790000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G182200 chr7D 135761654 135766089 4435 True 8192.0 8192 100.000000 1 4436 1 chr7D.!!$R2 4435
1 TraesCS7D01G182200 chr7D 135767329 135770635 3306 False 5930.0 5930 99.093000 376 3670 1 chr7D.!!$F2 3294
2 TraesCS7D01G182200 chr7D 23561318 23564624 3306 False 5886.0 5886 98.851000 376 3670 1 chr7D.!!$F1 3294
3 TraesCS7D01G182200 chr7D 14169469 14172774 3305 True 5845.0 5845 98.639000 376 3670 1 chr7D.!!$R1 3294
4 TraesCS7D01G182200 chr7D 400290134 400293439 3305 True 5812.0 5812 98.458000 376 3670 1 chr7D.!!$R3 3294
5 TraesCS7D01G182200 chr7D 135437164 135437817 653 True 341.0 353 86.496500 1 3960 2 chr7D.!!$R4 3959
6 TraesCS7D01G182200 chr2D 35059950 35063256 3306 True 5869.0 5869 98.760000 376 3670 1 chr2D.!!$R1 3294
7 TraesCS7D01G182200 chr2D 70657826 70661127 3301 True 5818.0 5818 98.517000 378 3670 1 chr2D.!!$R2 3292
8 TraesCS7D01G182200 chr5D 460676228 460679533 3305 False 5845.0 5845 98.639000 377 3670 1 chr5D.!!$F1 3293
9 TraesCS7D01G182200 chr6D 402529666 402532977 3311 True 5790.0 5790 98.310000 376 3669 1 chr6D.!!$R1 3293
10 TraesCS7D01G182200 chr6B 9820631 9823938 3307 False 5709.0 5709 97.884000 376 3670 1 chr6B.!!$F1 3294
11 TraesCS7D01G182200 chr6B 719767126 719770425 3299 True 5498.0 5498 96.771000 376 3671 1 chr6B.!!$R1 3295
12 TraesCS7D01G182200 chrUn 95716931 95719567 2636 False 4621.0 4621 98.370000 359 2983 1 chrUn.!!$F1 2624
13 TraesCS7D01G182200 chr7B 97672965 97673671 706 True 586.0 627 95.961500 1 4010 2 chr7B.!!$R3 4009
14 TraesCS7D01G182200 chr7B 97375556 97376880 1324 True 337.5 353 80.842500 1 4247 2 chr7B.!!$R2 4246
15 TraesCS7D01G182200 chr7A 134570399 134571488 1089 True 313.0 324 84.342333 1 3986 3 chr7A.!!$R2 3985


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
346 358 0.035056 ATCAACCTGCACAGCTACCC 60.035 55.000 0.00 0.00 0.00 3.69 F
347 359 1.675641 CAACCTGCACAGCTACCCC 60.676 63.158 0.00 0.00 0.00 4.95 F
356 368 1.764054 CAGCTACCCCAGGGAGGAG 60.764 68.421 7.25 4.24 41.22 3.69 F
358 370 2.840102 CTACCCCAGGGAGGAGCG 60.840 72.222 7.25 0.00 41.22 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1321 1356 7.592885 AGTAATCATATGAAAAATGCCTGCT 57.407 32.000 9.99 0.00 0.00 4.24 R
3062 3719 5.105023 ACATCTGCTGACTTATCATGAGTGT 60.105 40.000 0.09 0.00 33.22 3.55 R
3071 3728 6.000840 TCTAGATCGACATCTGCTGACTTAT 58.999 40.000 0.00 0.00 39.90 1.73 R
3437 4099 4.510167 AATAGCATGCTAACCTCCAGTT 57.490 40.909 30.06 14.83 42.83 3.16 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.003173 CTGCAGAGGACCCCCGAA 61.003 66.667 8.42 0.00 37.58 4.30
292 304 3.393970 CGAGGGGCAGCAGAGGAA 61.394 66.667 0.00 0.00 0.00 3.36
293 305 2.270527 GAGGGGCAGCAGAGGAAC 59.729 66.667 0.00 0.00 0.00 3.62
303 315 2.277858 CAGAGGAACTGCTACCGGT 58.722 57.895 13.98 13.98 41.55 5.28
304 316 0.173708 CAGAGGAACTGCTACCGGTC 59.826 60.000 12.40 0.00 41.55 4.79
305 317 0.971447 AGAGGAACTGCTACCGGTCC 60.971 60.000 12.40 3.70 41.55 4.46
306 318 1.957765 GAGGAACTGCTACCGGTCCC 61.958 65.000 12.40 3.40 41.55 4.46
307 319 2.183555 GAACTGCTACCGGTCCCG 59.816 66.667 12.40 1.45 39.44 5.14
320 332 3.965660 TCCCGGCTGGATTACCTC 58.034 61.111 15.09 0.00 38.61 3.85
321 333 2.131709 TCCCGGCTGGATTACCTCG 61.132 63.158 15.09 0.00 38.61 4.63
322 334 2.432300 CCCGGCTGGATTACCTCGT 61.432 63.158 15.09 0.00 37.49 4.18
323 335 1.067582 CCGGCTGGATTACCTCGTC 59.932 63.158 5.28 0.00 37.49 4.20
324 336 1.067582 CGGCTGGATTACCTCGTCC 59.932 63.158 0.00 0.00 37.04 4.79
325 337 1.672854 CGGCTGGATTACCTCGTCCA 61.673 60.000 0.00 0.00 42.03 4.02
326 338 0.179081 GGCTGGATTACCTCGTCCAC 60.179 60.000 0.00 0.00 39.51 4.02
327 339 0.535335 GCTGGATTACCTCGTCCACA 59.465 55.000 0.00 0.00 39.51 4.17
328 340 1.139058 GCTGGATTACCTCGTCCACAT 59.861 52.381 0.00 0.00 39.51 3.21
329 341 2.803492 GCTGGATTACCTCGTCCACATC 60.803 54.545 0.00 0.00 39.51 3.06
330 342 2.430694 CTGGATTACCTCGTCCACATCA 59.569 50.000 0.00 0.00 39.51 3.07
331 343 2.835156 TGGATTACCTCGTCCACATCAA 59.165 45.455 0.00 0.00 39.51 2.57
332 344 3.195661 GGATTACCTCGTCCACATCAAC 58.804 50.000 0.00 0.00 34.57 3.18
333 345 2.754946 TTACCTCGTCCACATCAACC 57.245 50.000 0.00 0.00 0.00 3.77
334 346 1.933021 TACCTCGTCCACATCAACCT 58.067 50.000 0.00 0.00 0.00 3.50
335 347 0.321671 ACCTCGTCCACATCAACCTG 59.678 55.000 0.00 0.00 0.00 4.00
336 348 1.021390 CCTCGTCCACATCAACCTGC 61.021 60.000 0.00 0.00 0.00 4.85
337 349 0.320683 CTCGTCCACATCAACCTGCA 60.321 55.000 0.00 0.00 0.00 4.41
338 350 0.602638 TCGTCCACATCAACCTGCAC 60.603 55.000 0.00 0.00 0.00 4.57
339 351 0.884259 CGTCCACATCAACCTGCACA 60.884 55.000 0.00 0.00 0.00 4.57
340 352 0.877071 GTCCACATCAACCTGCACAG 59.123 55.000 0.00 0.00 0.00 3.66
341 353 0.890542 TCCACATCAACCTGCACAGC 60.891 55.000 0.00 0.00 0.00 4.40
342 354 0.892358 CCACATCAACCTGCACAGCT 60.892 55.000 0.00 0.00 0.00 4.24
343 355 1.611410 CCACATCAACCTGCACAGCTA 60.611 52.381 0.00 0.00 0.00 3.32
344 356 1.466167 CACATCAACCTGCACAGCTAC 59.534 52.381 0.00 0.00 0.00 3.58
345 357 1.089920 CATCAACCTGCACAGCTACC 58.910 55.000 0.00 0.00 0.00 3.18
346 358 0.035056 ATCAACCTGCACAGCTACCC 60.035 55.000 0.00 0.00 0.00 3.69
347 359 1.675641 CAACCTGCACAGCTACCCC 60.676 63.158 0.00 0.00 0.00 4.95
348 360 2.153401 AACCTGCACAGCTACCCCA 61.153 57.895 0.00 0.00 0.00 4.96
349 361 2.129555 AACCTGCACAGCTACCCCAG 62.130 60.000 0.00 0.00 0.00 4.45
350 362 2.270205 CTGCACAGCTACCCCAGG 59.730 66.667 0.00 0.00 0.00 4.45
351 363 3.329889 TGCACAGCTACCCCAGGG 61.330 66.667 0.00 0.00 42.03 4.45
352 364 3.009115 GCACAGCTACCCCAGGGA 61.009 66.667 7.25 0.00 38.96 4.20
353 365 3.036429 GCACAGCTACCCCAGGGAG 62.036 68.421 7.25 0.00 38.96 4.30
354 366 2.041265 ACAGCTACCCCAGGGAGG 59.959 66.667 7.25 2.54 38.96 4.30
355 367 2.368594 CAGCTACCCCAGGGAGGA 59.631 66.667 7.25 0.00 41.22 3.71
356 368 1.764054 CAGCTACCCCAGGGAGGAG 60.764 68.421 7.25 4.24 41.22 3.69
357 369 3.164977 GCTACCCCAGGGAGGAGC 61.165 72.222 7.25 11.44 41.22 4.70
358 370 2.840102 CTACCCCAGGGAGGAGCG 60.840 72.222 7.25 0.00 41.22 5.03
359 371 4.475444 TACCCCAGGGAGGAGCGG 62.475 72.222 7.25 0.00 41.22 5.52
368 380 4.214327 GAGGAGCGGGCGGAGAAG 62.214 72.222 0.00 0.00 0.00 2.85
371 383 4.516195 GAGCGGGCGGAGAAGGAC 62.516 72.222 0.00 0.00 0.00 3.85
373 385 4.162690 GCGGGCGGAGAAGGACAT 62.163 66.667 0.00 0.00 0.00 3.06
585 602 4.347453 CAAGCCCAGGCAACACGC 62.347 66.667 12.03 0.00 44.88 5.34
819 854 9.667107 CCTAATCTATAGGCAAATATTTTCCGA 57.333 33.333 10.67 6.67 0.00 4.55
847 882 7.148440 GGTCTCAATTCTGAAACTTCTCATCTG 60.148 40.741 0.00 0.00 0.00 2.90
1017 1052 4.843728 TGGATATGTTTGTCTTGAGGACC 58.156 43.478 0.00 0.00 43.89 4.46
1321 1356 7.162761 TGTGTTTCCCGAAGATGAAATTAGTA 58.837 34.615 0.00 0.00 32.57 1.82
3062 3719 8.932945 TGTTGCACTAATTTTGTCAACAAATA 57.067 26.923 17.36 0.07 44.30 1.40
3671 4333 1.190833 ATCATAGAGCCGGCCCTGAG 61.191 60.000 26.15 14.12 0.00 3.35
3672 4334 2.525381 ATAGAGCCGGCCCTGAGG 60.525 66.667 26.15 0.00 0.00 3.86
3673 4335 3.088090 ATAGAGCCGGCCCTGAGGA 62.088 63.158 26.15 0.37 33.47 3.71
3677 4339 4.554036 GCCGGCCCTGAGGACATC 62.554 72.222 18.11 0.00 44.30 3.06
3678 4340 4.227134 CCGGCCCTGAGGACATCG 62.227 72.222 0.00 0.00 44.30 3.84
3679 4341 4.227134 CGGCCCTGAGGACATCGG 62.227 72.222 0.00 0.00 44.30 4.18
3680 4342 4.554036 GGCCCTGAGGACATCGGC 62.554 72.222 0.00 0.00 43.07 5.54
3681 4343 3.474570 GCCCTGAGGACATCGGCT 61.475 66.667 0.00 0.00 37.93 5.52
3682 4344 3.036429 GCCCTGAGGACATCGGCTT 62.036 63.158 0.00 0.00 37.93 4.35
3839 4501 0.523335 GTTTTTATGGCAGCGGCGAG 60.523 55.000 12.98 2.55 42.47 5.03
3870 4532 2.854214 GAAGTCGCTCGCAGCATCG 61.854 63.158 8.52 0.00 42.58 3.84
3998 4660 4.843220 GCTCATGCAGCTAACCAATAAT 57.157 40.909 9.16 0.00 45.83 1.28
3999 4661 5.192327 GCTCATGCAGCTAACCAATAATT 57.808 39.130 9.16 0.00 45.83 1.40
4000 4662 4.980434 GCTCATGCAGCTAACCAATAATTG 59.020 41.667 9.16 0.00 45.83 2.32
4001 4663 5.450965 GCTCATGCAGCTAACCAATAATTGT 60.451 40.000 9.16 0.00 45.83 2.71
4002 4664 5.893687 TCATGCAGCTAACCAATAATTGTG 58.106 37.500 0.00 0.00 0.00 3.33
4003 4665 4.717233 TGCAGCTAACCAATAATTGTGG 57.283 40.909 8.14 8.14 42.28 4.17
4010 4672 3.825908 ACCAATAATTGTGGTCTGGGT 57.174 42.857 9.29 0.00 46.79 4.51
4011 4673 3.697166 ACCAATAATTGTGGTCTGGGTC 58.303 45.455 9.29 0.00 46.79 4.46
4012 4674 3.075283 ACCAATAATTGTGGTCTGGGTCA 59.925 43.478 9.29 0.00 46.79 4.02
4013 4675 4.264352 ACCAATAATTGTGGTCTGGGTCAT 60.264 41.667 9.29 0.00 46.79 3.06
4014 4676 4.098349 CCAATAATTGTGGTCTGGGTCATG 59.902 45.833 2.53 0.00 0.00 3.07
4015 4677 1.549203 AATTGTGGTCTGGGTCATGC 58.451 50.000 0.00 0.00 0.00 4.06
4016 4678 0.405198 ATTGTGGTCTGGGTCATGCA 59.595 50.000 0.00 0.00 0.00 3.96
4017 4679 0.250858 TTGTGGTCTGGGTCATGCAG 60.251 55.000 0.00 0.00 0.00 4.41
4018 4680 2.042831 GTGGTCTGGGTCATGCAGC 61.043 63.158 0.00 0.00 0.00 5.25
4019 4681 2.226315 TGGTCTGGGTCATGCAGCT 61.226 57.895 0.00 0.00 0.00 4.24
4020 4682 0.909133 TGGTCTGGGTCATGCAGCTA 60.909 55.000 0.00 0.00 0.00 3.32
4023 4685 0.253044 TCTGGGTCATGCAGCTAACC 59.747 55.000 0.00 0.00 0.00 2.85
4031 4693 4.319766 GGTCATGCAGCTAACCAATAATCG 60.320 45.833 0.00 0.00 0.00 3.34
4041 4703 1.913419 ACCAATAATCGTGGTCTGGGT 59.087 47.619 0.00 0.00 46.79 4.51
4042 4704 2.093128 ACCAATAATCGTGGTCTGGGTC 60.093 50.000 0.00 0.00 46.79 4.46
4043 4705 2.561569 CAATAATCGTGGTCTGGGTCC 58.438 52.381 0.00 0.00 0.00 4.46
4044 4706 2.170607 CAATAATCGTGGTCTGGGTCCT 59.829 50.000 0.00 0.00 0.00 3.85
4045 4707 1.481871 TAATCGTGGTCTGGGTCCTC 58.518 55.000 0.00 0.00 0.00 3.71
4046 4708 1.605058 AATCGTGGTCTGGGTCCTCG 61.605 60.000 0.00 0.00 41.38 4.63
4047 4709 3.760035 CGTGGTCTGGGTCCTCGG 61.760 72.222 0.00 0.00 38.00 4.63
4048 4710 4.083862 GTGGTCTGGGTCCTCGGC 62.084 72.222 0.00 0.00 0.00 5.54
4063 4725 0.245539 TCGGCGACCTTTGGTTAGAG 59.754 55.000 4.99 0.00 35.25 2.43
4064 4726 1.359459 CGGCGACCTTTGGTTAGAGC 61.359 60.000 0.00 0.00 35.25 4.09
4066 4728 1.079503 GCGACCTTTGGTTAGAGCTG 58.920 55.000 0.00 0.00 35.25 4.24
4067 4729 1.079503 CGACCTTTGGTTAGAGCTGC 58.920 55.000 0.00 0.00 35.25 5.25
4068 4730 1.338200 CGACCTTTGGTTAGAGCTGCT 60.338 52.381 0.00 0.00 35.25 4.24
4069 4731 2.784347 GACCTTTGGTTAGAGCTGCTT 58.216 47.619 2.53 0.00 35.25 3.91
4071 4733 4.324267 GACCTTTGGTTAGAGCTGCTTAA 58.676 43.478 2.53 2.06 35.25 1.85
4073 4735 5.325239 ACCTTTGGTTAGAGCTGCTTAATT 58.675 37.500 2.53 0.00 27.29 1.40
4094 4759 0.621082 AGCTTCCAGGTTTCCCTAGC 59.379 55.000 0.00 0.00 39.89 3.42
4095 4760 0.621082 GCTTCCAGGTTTCCCTAGCT 59.379 55.000 0.00 0.00 39.89 3.32
4097 4762 2.555448 GCTTCCAGGTTTCCCTAGCTTT 60.555 50.000 0.00 0.00 39.89 3.51
4114 4779 3.053842 AGCTTTCATGGATCACAGACCAT 60.054 43.478 0.00 0.00 46.22 3.55
4115 4780 4.164796 AGCTTTCATGGATCACAGACCATA 59.835 41.667 0.00 0.00 43.89 2.74
4116 4781 4.274459 GCTTTCATGGATCACAGACCATAC 59.726 45.833 0.00 0.00 43.89 2.39
4117 4782 4.422073 TTCATGGATCACAGACCATACC 57.578 45.455 0.00 0.00 43.89 2.73
4119 4784 3.389002 TCATGGATCACAGACCATACCAG 59.611 47.826 0.00 0.00 43.89 4.00
4120 4785 1.486310 TGGATCACAGACCATACCAGC 59.514 52.381 0.00 0.00 0.00 4.85
4122 4787 2.171448 GGATCACAGACCATACCAGCTT 59.829 50.000 0.00 0.00 0.00 3.74
4123 4788 3.388024 GGATCACAGACCATACCAGCTTA 59.612 47.826 0.00 0.00 0.00 3.09
4124 4789 4.502259 GGATCACAGACCATACCAGCTTAG 60.502 50.000 0.00 0.00 0.00 2.18
4125 4790 3.441101 TCACAGACCATACCAGCTTAGT 58.559 45.455 0.00 0.00 0.00 2.24
4126 4791 3.838317 TCACAGACCATACCAGCTTAGTT 59.162 43.478 0.00 0.00 0.00 2.24
4127 4792 5.020795 TCACAGACCATACCAGCTTAGTTA 58.979 41.667 0.00 0.00 0.00 2.24
4128 4793 5.661312 TCACAGACCATACCAGCTTAGTTAT 59.339 40.000 0.00 0.00 0.00 1.89
4129 4794 5.755375 CACAGACCATACCAGCTTAGTTATG 59.245 44.000 0.00 0.00 0.00 1.90
4130 4795 5.425539 ACAGACCATACCAGCTTAGTTATGT 59.574 40.000 0.00 0.00 0.00 2.29
4131 4796 6.610020 ACAGACCATACCAGCTTAGTTATGTA 59.390 38.462 0.00 0.00 0.00 2.29
4132 4797 7.148641 CAGACCATACCAGCTTAGTTATGTAG 58.851 42.308 0.00 0.00 0.00 2.74
4133 4798 6.839657 AGACCATACCAGCTTAGTTATGTAGT 59.160 38.462 0.00 0.00 0.00 2.73
4134 4799 8.003044 AGACCATACCAGCTTAGTTATGTAGTA 58.997 37.037 0.00 0.00 0.00 1.82
4135 4800 7.949434 ACCATACCAGCTTAGTTATGTAGTAC 58.051 38.462 0.00 0.00 0.00 2.73
4136 4801 7.783596 ACCATACCAGCTTAGTTATGTAGTACT 59.216 37.037 0.00 0.00 0.00 2.73
4137 4802 9.293404 CCATACCAGCTTAGTTATGTAGTACTA 57.707 37.037 0.00 0.00 0.00 1.82
4140 4805 8.449251 ACCAGCTTAGTTATGTAGTACTACTC 57.551 38.462 28.56 17.60 37.00 2.59
4141 4806 7.501892 ACCAGCTTAGTTATGTAGTACTACTCC 59.498 40.741 28.56 15.76 37.00 3.85
4151 4816 2.641305 AGTACTACTCCGTAGTGGCTG 58.359 52.381 14.99 0.00 46.99 4.85
4155 4820 1.651240 TACTCCGTAGTGGCTGCGAC 61.651 60.000 6.69 6.69 41.80 5.19
4169 4834 0.386858 TGCGACGACAGCAAGTAGTC 60.387 55.000 0.00 10.93 45.84 2.59
4170 4835 0.109689 GCGACGACAGCAAGTAGTCT 60.110 55.000 16.27 0.00 46.74 3.24
4171 4836 1.884756 CGACGACAGCAAGTAGTCTC 58.115 55.000 16.27 0.00 46.74 3.36
4177 4843 4.944930 ACGACAGCAAGTAGTCTCTCTATT 59.055 41.667 0.00 0.00 29.38 1.73
4178 4844 6.114089 ACGACAGCAAGTAGTCTCTCTATTA 58.886 40.000 0.00 0.00 29.38 0.98
4184 4850 8.894731 CAGCAAGTAGTCTCTCTATTAGTAACA 58.105 37.037 0.00 0.00 0.00 2.41
4185 4851 9.116067 AGCAAGTAGTCTCTCTATTAGTAACAG 57.884 37.037 0.00 0.00 0.00 3.16
4203 4869 2.889045 ACAGTGCTAGGTTTCGTCAGTA 59.111 45.455 0.00 0.00 0.00 2.74
4205 4871 2.492484 AGTGCTAGGTTTCGTCAGTAGG 59.508 50.000 0.00 0.00 0.00 3.18
4206 4872 1.822990 TGCTAGGTTTCGTCAGTAGGG 59.177 52.381 0.00 0.00 0.00 3.53
4208 4874 2.099427 GCTAGGTTTCGTCAGTAGGGAG 59.901 54.545 0.00 0.00 0.00 4.30
4209 4875 2.305858 AGGTTTCGTCAGTAGGGAGT 57.694 50.000 0.00 0.00 0.00 3.85
4210 4876 2.169330 AGGTTTCGTCAGTAGGGAGTC 58.831 52.381 0.00 0.00 0.00 3.36
4211 4877 1.891150 GGTTTCGTCAGTAGGGAGTCA 59.109 52.381 0.00 0.00 0.00 3.41
4212 4878 2.496470 GGTTTCGTCAGTAGGGAGTCAT 59.504 50.000 0.00 0.00 0.00 3.06
4213 4879 3.698040 GGTTTCGTCAGTAGGGAGTCATA 59.302 47.826 0.00 0.00 0.00 2.15
4214 4880 4.341520 GGTTTCGTCAGTAGGGAGTCATAT 59.658 45.833 0.00 0.00 0.00 1.78
4215 4881 5.533903 GGTTTCGTCAGTAGGGAGTCATATA 59.466 44.000 0.00 0.00 0.00 0.86
4216 4882 6.437094 GTTTCGTCAGTAGGGAGTCATATAC 58.563 44.000 0.00 0.00 0.00 1.47
4239 4905 2.143122 TGACTCATGTTCGTTCAAGGC 58.857 47.619 0.00 0.00 0.00 4.35
4242 4908 2.549754 ACTCATGTTCGTTCAAGGCTTG 59.450 45.455 21.17 21.17 0.00 4.01
4244 4910 3.734463 TCATGTTCGTTCAAGGCTTGTA 58.266 40.909 25.39 14.74 0.00 2.41
4245 4911 4.323417 TCATGTTCGTTCAAGGCTTGTAT 58.677 39.130 25.39 8.23 0.00 2.29
4246 4912 4.154015 TCATGTTCGTTCAAGGCTTGTATG 59.846 41.667 25.39 21.00 0.00 2.39
4247 4913 2.225491 TGTTCGTTCAAGGCTTGTATGC 59.775 45.455 25.39 10.96 0.00 3.14
4248 4914 2.472695 TCGTTCAAGGCTTGTATGCT 57.527 45.000 25.39 0.00 0.00 3.79
4249 4915 3.603158 TCGTTCAAGGCTTGTATGCTA 57.397 42.857 25.39 3.49 0.00 3.49
4250 4916 3.259064 TCGTTCAAGGCTTGTATGCTAC 58.741 45.455 25.39 13.71 0.00 3.58
4251 4917 3.056107 TCGTTCAAGGCTTGTATGCTACT 60.056 43.478 25.39 0.00 0.00 2.57
4252 4918 3.307242 CGTTCAAGGCTTGTATGCTACTC 59.693 47.826 25.39 3.11 0.00 2.59
4253 4919 4.508662 GTTCAAGGCTTGTATGCTACTCT 58.491 43.478 25.39 0.00 0.00 3.24
4254 4920 5.661458 GTTCAAGGCTTGTATGCTACTCTA 58.339 41.667 25.39 0.00 0.00 2.43
4255 4921 6.284459 GTTCAAGGCTTGTATGCTACTCTAT 58.716 40.000 25.39 0.00 0.00 1.98
4256 4922 6.485830 TCAAGGCTTGTATGCTACTCTATT 57.514 37.500 25.39 0.00 0.00 1.73
4257 4923 7.597288 TCAAGGCTTGTATGCTACTCTATTA 57.403 36.000 25.39 0.00 0.00 0.98
4258 4924 7.661968 TCAAGGCTTGTATGCTACTCTATTAG 58.338 38.462 25.39 0.00 0.00 1.73
4259 4925 7.287927 TCAAGGCTTGTATGCTACTCTATTAGT 59.712 37.037 25.39 0.00 42.62 2.24
4260 4926 8.577296 CAAGGCTTGTATGCTACTCTATTAGTA 58.423 37.037 19.07 0.00 39.80 1.82
4261 4927 8.707796 AGGCTTGTATGCTACTCTATTAGTAA 57.292 34.615 0.00 0.00 40.21 2.24
4262 4928 8.578151 AGGCTTGTATGCTACTCTATTAGTAAC 58.422 37.037 0.00 0.00 40.21 2.50
4263 4929 7.537991 GGCTTGTATGCTACTCTATTAGTAACG 59.462 40.741 0.00 0.00 40.21 3.18
4264 4930 7.537991 GCTTGTATGCTACTCTATTAGTAACGG 59.462 40.741 0.00 0.00 40.21 4.44
4265 4931 8.681486 TTGTATGCTACTCTATTAGTAACGGA 57.319 34.615 0.00 0.00 40.21 4.69
4266 4932 8.320396 TGTATGCTACTCTATTAGTAACGGAG 57.680 38.462 10.58 10.58 40.21 4.63
4267 4933 7.935755 TGTATGCTACTCTATTAGTAACGGAGT 59.064 37.037 17.86 17.86 40.21 3.85
4268 4934 9.429359 GTATGCTACTCTATTAGTAACGGAGTA 57.571 37.037 18.08 18.08 40.21 2.59
4270 4936 8.915057 TGCTACTCTATTAGTAACGGAGTATT 57.085 34.615 18.84 4.96 40.21 1.89
4275 4941 9.859152 ACTCTATTAGTAACGGAGTATTAGGTT 57.141 33.333 14.30 0.00 45.00 3.50
4280 4946 8.995027 TTAGTAACGGAGTATTAGGTTATGGA 57.005 34.615 0.00 0.00 45.00 3.41
4281 4947 7.902920 AGTAACGGAGTATTAGGTTATGGAA 57.097 36.000 0.00 0.00 45.00 3.53
4282 4948 8.488308 AGTAACGGAGTATTAGGTTATGGAAT 57.512 34.615 0.00 0.00 45.00 3.01
4283 4949 8.583296 AGTAACGGAGTATTAGGTTATGGAATC 58.417 37.037 0.00 0.00 45.00 2.52
4284 4950 6.022163 ACGGAGTATTAGGTTATGGAATCG 57.978 41.667 0.00 0.00 41.94 3.34
4285 4951 5.047519 ACGGAGTATTAGGTTATGGAATCGG 60.048 44.000 0.00 0.00 41.94 4.18
4286 4952 5.047519 CGGAGTATTAGGTTATGGAATCGGT 60.048 44.000 0.00 0.00 0.00 4.69
4287 4953 6.164176 GGAGTATTAGGTTATGGAATCGGTG 58.836 44.000 0.00 0.00 0.00 4.94
4288 4954 6.110411 AGTATTAGGTTATGGAATCGGTGG 57.890 41.667 0.00 0.00 0.00 4.61
4289 4955 5.605488 AGTATTAGGTTATGGAATCGGTGGT 59.395 40.000 0.00 0.00 0.00 4.16
4290 4956 2.710096 AGGTTATGGAATCGGTGGTG 57.290 50.000 0.00 0.00 0.00 4.17
4291 4957 1.021968 GGTTATGGAATCGGTGGTGC 58.978 55.000 0.00 0.00 0.00 5.01
4292 4958 1.408266 GGTTATGGAATCGGTGGTGCT 60.408 52.381 0.00 0.00 0.00 4.40
4293 4959 2.158871 GGTTATGGAATCGGTGGTGCTA 60.159 50.000 0.00 0.00 0.00 3.49
4294 4960 3.131396 GTTATGGAATCGGTGGTGCTAG 58.869 50.000 0.00 0.00 0.00 3.42
4295 4961 1.204146 ATGGAATCGGTGGTGCTAGT 58.796 50.000 0.00 0.00 0.00 2.57
4296 4962 0.249120 TGGAATCGGTGGTGCTAGTG 59.751 55.000 0.00 0.00 0.00 2.74
4297 4963 0.249398 GGAATCGGTGGTGCTAGTGT 59.751 55.000 0.00 0.00 0.00 3.55
4298 4964 1.359848 GAATCGGTGGTGCTAGTGTG 58.640 55.000 0.00 0.00 0.00 3.82
4299 4965 0.036388 AATCGGTGGTGCTAGTGTGG 60.036 55.000 0.00 0.00 0.00 4.17
4300 4966 2.521958 ATCGGTGGTGCTAGTGTGGC 62.522 60.000 0.00 0.00 0.00 5.01
4301 4967 2.750350 GGTGGTGCTAGTGTGGCT 59.250 61.111 0.00 0.00 0.00 4.75
4302 4968 1.073199 GGTGGTGCTAGTGTGGCTT 59.927 57.895 0.00 0.00 0.00 4.35
4303 4969 1.237285 GGTGGTGCTAGTGTGGCTTG 61.237 60.000 0.00 0.00 0.00 4.01
4304 4970 0.535102 GTGGTGCTAGTGTGGCTTGT 60.535 55.000 0.00 0.00 0.00 3.16
4305 4971 0.182537 TGGTGCTAGTGTGGCTTGTT 59.817 50.000 0.00 0.00 0.00 2.83
4306 4972 1.318576 GGTGCTAGTGTGGCTTGTTT 58.681 50.000 0.00 0.00 0.00 2.83
4307 4973 1.001378 GGTGCTAGTGTGGCTTGTTTG 60.001 52.381 0.00 0.00 0.00 2.93
4308 4974 0.667993 TGCTAGTGTGGCTTGTTTGC 59.332 50.000 0.00 0.00 0.00 3.68
4309 4975 0.385974 GCTAGTGTGGCTTGTTTGCG 60.386 55.000 0.00 0.00 0.00 4.85
4310 4976 1.225855 CTAGTGTGGCTTGTTTGCGA 58.774 50.000 0.00 0.00 0.00 5.10
4311 4977 0.941542 TAGTGTGGCTTGTTTGCGAC 59.058 50.000 0.00 0.00 41.10 5.19
4312 4978 0.748005 AGTGTGGCTTGTTTGCGACT 60.748 50.000 0.00 0.00 41.25 4.18
4313 4979 0.100503 GTGTGGCTTGTTTGCGACTT 59.899 50.000 0.00 0.00 41.25 3.01
4314 4980 1.332375 GTGTGGCTTGTTTGCGACTTA 59.668 47.619 0.00 0.00 41.25 2.24
4315 4981 2.017782 TGTGGCTTGTTTGCGACTTAA 58.982 42.857 0.00 0.00 41.25 1.85
4316 4982 2.621055 TGTGGCTTGTTTGCGACTTAAT 59.379 40.909 0.00 0.00 41.25 1.40
4317 4983 3.067461 TGTGGCTTGTTTGCGACTTAATT 59.933 39.130 0.00 0.00 41.25 1.40
4318 4984 4.048504 GTGGCTTGTTTGCGACTTAATTT 58.951 39.130 0.00 0.00 38.38 1.82
4319 4985 4.148174 GTGGCTTGTTTGCGACTTAATTTC 59.852 41.667 0.00 0.00 38.38 2.17
4320 4986 3.673338 GGCTTGTTTGCGACTTAATTTCC 59.327 43.478 0.00 0.00 0.00 3.13
4321 4987 3.360758 GCTTGTTTGCGACTTAATTTCCG 59.639 43.478 0.00 0.00 0.00 4.30
4322 4988 3.546002 TGTTTGCGACTTAATTTCCGG 57.454 42.857 0.00 0.00 0.00 5.14
4323 4989 2.879646 TGTTTGCGACTTAATTTCCGGT 59.120 40.909 0.00 0.00 0.00 5.28
4324 4990 3.231160 GTTTGCGACTTAATTTCCGGTG 58.769 45.455 0.00 0.00 0.00 4.94
4325 4991 1.444836 TGCGACTTAATTTCCGGTGG 58.555 50.000 0.00 0.00 0.00 4.61
4326 4992 0.730840 GCGACTTAATTTCCGGTGGG 59.269 55.000 0.00 0.00 0.00 4.61
4327 4993 1.676615 GCGACTTAATTTCCGGTGGGA 60.677 52.381 0.00 0.00 41.83 4.37
4328 4994 2.277084 CGACTTAATTTCCGGTGGGAG 58.723 52.381 0.00 0.00 44.98 4.30
4329 4995 2.014857 GACTTAATTTCCGGTGGGAGC 58.985 52.381 0.00 0.00 44.98 4.70
4330 4996 1.633945 ACTTAATTTCCGGTGGGAGCT 59.366 47.619 0.00 0.00 44.98 4.09
4331 4997 2.017049 CTTAATTTCCGGTGGGAGCTG 58.983 52.381 0.00 0.00 44.98 4.24
4332 4998 0.393808 TAATTTCCGGTGGGAGCTGC 60.394 55.000 0.00 0.00 44.98 5.25
4333 4999 2.424842 AATTTCCGGTGGGAGCTGCA 62.425 55.000 7.79 0.00 44.98 4.41
4334 5000 2.215451 ATTTCCGGTGGGAGCTGCAT 62.215 55.000 7.79 0.00 44.98 3.96
4335 5001 2.424842 TTTCCGGTGGGAGCTGCATT 62.425 55.000 7.79 0.00 44.98 3.56
4336 5002 2.361610 CCGGTGGGAGCTGCATTT 60.362 61.111 7.79 0.00 34.06 2.32
4337 5003 2.703798 CCGGTGGGAGCTGCATTTG 61.704 63.158 7.79 0.00 34.06 2.32
4338 5004 1.973281 CGGTGGGAGCTGCATTTGT 60.973 57.895 7.79 0.00 0.00 2.83
4339 5005 0.676466 CGGTGGGAGCTGCATTTGTA 60.676 55.000 7.79 0.00 0.00 2.41
4340 5006 0.811281 GGTGGGAGCTGCATTTGTAC 59.189 55.000 7.79 0.00 0.00 2.90
4341 5007 1.614317 GGTGGGAGCTGCATTTGTACT 60.614 52.381 7.79 0.00 0.00 2.73
4342 5008 1.740025 GTGGGAGCTGCATTTGTACTC 59.260 52.381 7.79 0.00 0.00 2.59
4343 5009 1.340017 TGGGAGCTGCATTTGTACTCC 60.340 52.381 7.79 0.00 45.10 3.85
4344 5010 1.383523 GGAGCTGCATTTGTACTCCC 58.616 55.000 0.00 0.00 40.91 4.30
4345 5011 1.065126 GGAGCTGCATTTGTACTCCCT 60.065 52.381 0.00 0.00 40.91 4.20
4346 5012 2.284190 GAGCTGCATTTGTACTCCCTC 58.716 52.381 1.02 0.00 0.00 4.30
4347 5013 1.912043 AGCTGCATTTGTACTCCCTCT 59.088 47.619 1.02 0.00 0.00 3.69
4348 5014 2.012673 GCTGCATTTGTACTCCCTCTG 58.987 52.381 0.00 0.00 0.00 3.35
4349 5015 2.012673 CTGCATTTGTACTCCCTCTGC 58.987 52.381 0.00 0.00 0.00 4.26
4350 5016 1.340017 TGCATTTGTACTCCCTCTGCC 60.340 52.381 0.00 0.00 0.00 4.85
4351 5017 2.019156 GCATTTGTACTCCCTCTGCCC 61.019 57.143 0.00 0.00 0.00 5.36
4352 5018 0.919710 ATTTGTACTCCCTCTGCCCC 59.080 55.000 0.00 0.00 0.00 5.80
4353 5019 0.474854 TTTGTACTCCCTCTGCCCCA 60.475 55.000 0.00 0.00 0.00 4.96
4354 5020 0.253160 TTGTACTCCCTCTGCCCCAT 60.253 55.000 0.00 0.00 0.00 4.00
4355 5021 0.639943 TGTACTCCCTCTGCCCCATA 59.360 55.000 0.00 0.00 0.00 2.74
4356 5022 1.009060 TGTACTCCCTCTGCCCCATAA 59.991 52.381 0.00 0.00 0.00 1.90
4357 5023 2.339769 GTACTCCCTCTGCCCCATAAT 58.660 52.381 0.00 0.00 0.00 1.28
4358 5024 2.815357 ACTCCCTCTGCCCCATAATA 57.185 50.000 0.00 0.00 0.00 0.98
4359 5025 3.074857 ACTCCCTCTGCCCCATAATAA 57.925 47.619 0.00 0.00 0.00 1.40
4360 5026 2.711547 ACTCCCTCTGCCCCATAATAAC 59.288 50.000 0.00 0.00 0.00 1.89
4361 5027 2.040412 CTCCCTCTGCCCCATAATAACC 59.960 54.545 0.00 0.00 0.00 2.85
4362 5028 1.780309 CCCTCTGCCCCATAATAACCA 59.220 52.381 0.00 0.00 0.00 3.67
4363 5029 2.379907 CCCTCTGCCCCATAATAACCAT 59.620 50.000 0.00 0.00 0.00 3.55
4364 5030 3.591527 CCCTCTGCCCCATAATAACCATA 59.408 47.826 0.00 0.00 0.00 2.74
4365 5031 4.044065 CCCTCTGCCCCATAATAACCATAA 59.956 45.833 0.00 0.00 0.00 1.90
4366 5032 5.281716 CCCTCTGCCCCATAATAACCATAAT 60.282 44.000 0.00 0.00 0.00 1.28
4367 5033 6.069088 CCCTCTGCCCCATAATAACCATAATA 60.069 42.308 0.00 0.00 0.00 0.98
4368 5034 7.367733 CCCTCTGCCCCATAATAACCATAATAT 60.368 40.741 0.00 0.00 0.00 1.28
4369 5035 8.723365 CCTCTGCCCCATAATAACCATAATATA 58.277 37.037 0.00 0.00 0.00 0.86
4404 5070 9.453325 TTTTAAGTTACCATAGCTTGAAAAACG 57.547 29.630 0.00 0.00 33.75 3.60
4405 5071 6.628919 AAGTTACCATAGCTTGAAAAACGT 57.371 33.333 0.00 0.00 0.00 3.99
4406 5072 6.628919 AGTTACCATAGCTTGAAAAACGTT 57.371 33.333 0.00 0.00 0.00 3.99
4407 5073 6.665465 AGTTACCATAGCTTGAAAAACGTTC 58.335 36.000 0.00 0.00 0.00 3.95
4408 5074 6.485648 AGTTACCATAGCTTGAAAAACGTTCT 59.514 34.615 0.00 0.00 0.00 3.01
4409 5075 5.767816 ACCATAGCTTGAAAAACGTTCTT 57.232 34.783 0.00 0.00 0.00 2.52
4410 5076 6.144078 ACCATAGCTTGAAAAACGTTCTTT 57.856 33.333 0.00 4.72 0.00 2.52
4411 5077 7.266922 ACCATAGCTTGAAAAACGTTCTTTA 57.733 32.000 0.00 0.00 0.00 1.85
4412 5078 7.882179 ACCATAGCTTGAAAAACGTTCTTTAT 58.118 30.769 0.00 0.00 0.00 1.40
4413 5079 9.005777 ACCATAGCTTGAAAAACGTTCTTTATA 57.994 29.630 0.00 0.00 0.00 0.98
4429 5095 8.897872 GTTCTTTATATTATGGAACGGAAGGA 57.102 34.615 0.00 0.00 0.00 3.36
4430 5096 8.989980 GTTCTTTATATTATGGAACGGAAGGAG 58.010 37.037 0.00 0.00 0.00 3.69
4431 5097 8.258850 TCTTTATATTATGGAACGGAAGGAGT 57.741 34.615 0.00 0.00 0.00 3.85
4432 5098 9.370930 TCTTTATATTATGGAACGGAAGGAGTA 57.629 33.333 0.00 0.00 0.00 2.59
4433 5099 9.640963 CTTTATATTATGGAACGGAAGGAGTAG 57.359 37.037 0.00 0.00 0.00 2.57
4434 5100 4.957684 ATTATGGAACGGAAGGAGTAGG 57.042 45.455 0.00 0.00 0.00 3.18
4435 5101 2.249309 ATGGAACGGAAGGAGTAGGT 57.751 50.000 0.00 0.00 0.00 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 1.747745 CGGTTCATTTCGGGGGTCC 60.748 63.158 0.00 0.00 0.00 4.46
23 24 3.055719 CTGGCCACGCGGTTCATT 61.056 61.111 12.47 0.00 33.28 2.57
290 302 2.183555 CGGGACCGGTAGCAGTTC 59.816 66.667 7.34 0.00 35.56 3.01
304 316 2.365095 GACGAGGTAATCCAGCCGGG 62.365 65.000 2.18 0.00 35.89 5.73
305 317 1.067582 GACGAGGTAATCCAGCCGG 59.932 63.158 0.00 0.00 35.89 6.13
306 318 1.067582 GGACGAGGTAATCCAGCCG 59.932 63.158 0.00 0.00 34.87 5.52
307 319 0.179081 GTGGACGAGGTAATCCAGCC 60.179 60.000 0.00 0.00 45.72 4.85
308 320 0.535335 TGTGGACGAGGTAATCCAGC 59.465 55.000 0.00 0.00 45.72 4.85
309 321 2.430694 TGATGTGGACGAGGTAATCCAG 59.569 50.000 0.00 0.00 45.72 3.86
310 322 2.462723 TGATGTGGACGAGGTAATCCA 58.537 47.619 0.00 0.00 42.88 3.41
311 323 3.195661 GTTGATGTGGACGAGGTAATCC 58.804 50.000 0.00 0.00 35.37 3.01
312 324 3.118738 AGGTTGATGTGGACGAGGTAATC 60.119 47.826 0.00 0.00 0.00 1.75
313 325 2.838202 AGGTTGATGTGGACGAGGTAAT 59.162 45.455 0.00 0.00 0.00 1.89
314 326 2.028476 CAGGTTGATGTGGACGAGGTAA 60.028 50.000 0.00 0.00 0.00 2.85
315 327 1.548719 CAGGTTGATGTGGACGAGGTA 59.451 52.381 0.00 0.00 0.00 3.08
316 328 0.321671 CAGGTTGATGTGGACGAGGT 59.678 55.000 0.00 0.00 0.00 3.85
317 329 1.021390 GCAGGTTGATGTGGACGAGG 61.021 60.000 0.00 0.00 0.00 4.63
318 330 0.320683 TGCAGGTTGATGTGGACGAG 60.321 55.000 0.00 0.00 0.00 4.18
319 331 0.602638 GTGCAGGTTGATGTGGACGA 60.603 55.000 0.00 0.00 0.00 4.20
320 332 0.884259 TGTGCAGGTTGATGTGGACG 60.884 55.000 0.00 0.00 37.80 4.79
321 333 0.877071 CTGTGCAGGTTGATGTGGAC 59.123 55.000 0.00 0.00 35.70 4.02
322 334 0.890542 GCTGTGCAGGTTGATGTGGA 60.891 55.000 1.11 0.00 0.00 4.02
323 335 0.892358 AGCTGTGCAGGTTGATGTGG 60.892 55.000 0.00 0.00 35.28 4.17
324 336 1.466167 GTAGCTGTGCAGGTTGATGTG 59.534 52.381 9.24 0.00 40.09 3.21
325 337 1.611673 GGTAGCTGTGCAGGTTGATGT 60.612 52.381 9.24 0.00 40.09 3.06
326 338 1.089920 GGTAGCTGTGCAGGTTGATG 58.910 55.000 9.24 0.00 40.09 3.07
327 339 0.035056 GGGTAGCTGTGCAGGTTGAT 60.035 55.000 9.24 0.00 40.09 2.57
328 340 1.374947 GGGTAGCTGTGCAGGTTGA 59.625 57.895 9.24 0.00 40.09 3.18
329 341 1.675641 GGGGTAGCTGTGCAGGTTG 60.676 63.158 9.24 0.00 40.09 3.77
330 342 2.129555 CTGGGGTAGCTGTGCAGGTT 62.130 60.000 9.24 0.00 40.09 3.50
331 343 2.529136 TGGGGTAGCTGTGCAGGT 60.529 61.111 8.95 8.95 42.47 4.00
332 344 2.270205 CTGGGGTAGCTGTGCAGG 59.730 66.667 0.00 0.00 0.00 4.85
333 345 2.270205 CCTGGGGTAGCTGTGCAG 59.730 66.667 0.00 0.00 0.00 4.41
334 346 3.329889 CCCTGGGGTAGCTGTGCA 61.330 66.667 4.27 0.00 0.00 4.57
335 347 3.009115 TCCCTGGGGTAGCTGTGC 61.009 66.667 14.00 0.00 36.47 4.57
336 348 2.370445 CCTCCCTGGGGTAGCTGTG 61.370 68.421 14.00 0.00 36.47 3.66
337 349 2.041265 CCTCCCTGGGGTAGCTGT 59.959 66.667 14.00 0.00 36.47 4.40
338 350 1.764054 CTCCTCCCTGGGGTAGCTG 60.764 68.421 14.00 0.00 36.20 4.24
339 351 2.699496 CTCCTCCCTGGGGTAGCT 59.301 66.667 14.00 0.00 36.20 3.32
340 352 3.164977 GCTCCTCCCTGGGGTAGC 61.165 72.222 14.00 15.08 38.99 3.58
341 353 2.840102 CGCTCCTCCCTGGGGTAG 60.840 72.222 14.00 9.06 38.99 3.18
342 354 4.475444 CCGCTCCTCCCTGGGGTA 62.475 72.222 14.00 0.00 38.99 3.69
351 363 4.214327 CTTCTCCGCCCGCTCCTC 62.214 72.222 0.00 0.00 0.00 3.71
354 366 4.516195 GTCCTTCTCCGCCCGCTC 62.516 72.222 0.00 0.00 0.00 5.03
356 368 4.162690 ATGTCCTTCTCCGCCCGC 62.163 66.667 0.00 0.00 0.00 6.13
357 369 2.107141 GATGTCCTTCTCCGCCCG 59.893 66.667 0.00 0.00 0.00 6.13
358 370 2.317149 CTGGATGTCCTTCTCCGCCC 62.317 65.000 0.09 0.00 36.82 6.13
359 371 1.144936 CTGGATGTCCTTCTCCGCC 59.855 63.158 0.09 0.00 36.82 6.13
360 372 1.144936 CCTGGATGTCCTTCTCCGC 59.855 63.158 0.09 0.00 36.82 5.54
361 373 1.826024 CCCTGGATGTCCTTCTCCG 59.174 63.158 0.00 0.00 36.82 4.63
362 374 1.529309 GCCCTGGATGTCCTTCTCC 59.471 63.158 0.00 0.00 36.82 3.71
363 375 1.529309 GGCCCTGGATGTCCTTCTC 59.471 63.158 0.00 0.00 36.82 2.87
364 376 2.370445 CGGCCCTGGATGTCCTTCT 61.370 63.158 0.00 0.00 36.82 2.85
365 377 2.190578 CGGCCCTGGATGTCCTTC 59.809 66.667 0.00 0.00 36.82 3.46
366 378 3.411517 CCGGCCCTGGATGTCCTT 61.412 66.667 0.00 0.00 36.82 3.36
369 381 3.645268 AAAGCCGGCCCTGGATGTC 62.645 63.158 26.15 0.00 0.00 3.06
370 382 3.661648 AAAGCCGGCCCTGGATGT 61.662 61.111 26.15 0.00 0.00 3.06
371 383 3.142838 CAAAGCCGGCCCTGGATG 61.143 66.667 26.15 9.58 0.00 3.51
372 384 4.447342 CCAAAGCCGGCCCTGGAT 62.447 66.667 31.65 8.22 0.00 3.41
567 582 2.906897 CGTGTTGCCTGGGCTTGT 60.907 61.111 13.05 0.00 42.51 3.16
585 602 4.379243 AGGCGAACGACAGGGCAG 62.379 66.667 2.25 0.00 0.00 4.85
819 854 6.537355 TGAGAAGTTTCAGAATTGAGACCAT 58.463 36.000 0.00 0.00 38.78 3.55
1017 1052 2.076100 TCTGAATTTGTAGCAGCACCG 58.924 47.619 0.00 0.00 0.00 4.94
1321 1356 7.592885 AGTAATCATATGAAAAATGCCTGCT 57.407 32.000 9.99 0.00 0.00 4.24
3062 3719 5.105023 ACATCTGCTGACTTATCATGAGTGT 60.105 40.000 0.09 0.00 33.22 3.55
3071 3728 6.000840 TCTAGATCGACATCTGCTGACTTAT 58.999 40.000 0.00 0.00 39.90 1.73
3437 4099 4.510167 AATAGCATGCTAACCTCCAGTT 57.490 40.909 30.06 14.83 42.83 3.16
3593 4255 8.695456 GCCCAATAGAGAGAAAAATCCAATTTA 58.305 33.333 0.00 0.00 0.00 1.40
3671 4333 0.734889 CCATGTTGAAGCCGATGTCC 59.265 55.000 0.00 0.00 0.00 4.02
3672 4334 0.099436 GCCATGTTGAAGCCGATGTC 59.901 55.000 0.00 0.00 0.00 3.06
3673 4335 1.315257 GGCCATGTTGAAGCCGATGT 61.315 55.000 0.00 0.00 36.84 3.06
3674 4336 1.434696 GGCCATGTTGAAGCCGATG 59.565 57.895 0.00 0.00 36.84 3.84
3675 4337 3.924507 GGCCATGTTGAAGCCGAT 58.075 55.556 0.00 0.00 36.84 4.18
3679 4341 0.179119 GATGCTGGCCATGTTGAAGC 60.179 55.000 5.51 4.60 33.29 3.86
3680 4342 0.099968 CGATGCTGGCCATGTTGAAG 59.900 55.000 5.51 0.00 33.29 3.02
3681 4343 1.314534 CCGATGCTGGCCATGTTGAA 61.315 55.000 5.51 0.00 33.29 2.69
3682 4344 1.750018 CCGATGCTGGCCATGTTGA 60.750 57.895 5.51 0.00 33.29 3.18
3775 4437 3.564027 CGATTTCGCGAGGGTGCC 61.564 66.667 9.59 0.00 0.00 5.01
3870 4532 0.179111 TTGACGATCTCGATGGGCAC 60.179 55.000 6.60 0.00 43.02 5.01
3991 4653 3.696045 TGACCCAGACCACAATTATTGG 58.304 45.455 9.88 4.08 40.32 3.16
3992 4654 4.440525 GCATGACCCAGACCACAATTATTG 60.441 45.833 3.07 3.07 0.00 1.90
3993 4655 3.701040 GCATGACCCAGACCACAATTATT 59.299 43.478 0.00 0.00 0.00 1.40
3994 4656 3.290710 GCATGACCCAGACCACAATTAT 58.709 45.455 0.00 0.00 0.00 1.28
3995 4657 2.040947 TGCATGACCCAGACCACAATTA 59.959 45.455 0.00 0.00 0.00 1.40
3996 4658 1.203038 TGCATGACCCAGACCACAATT 60.203 47.619 0.00 0.00 0.00 2.32
3997 4659 0.405198 TGCATGACCCAGACCACAAT 59.595 50.000 0.00 0.00 0.00 2.71
3998 4660 0.250858 CTGCATGACCCAGACCACAA 60.251 55.000 0.00 0.00 32.03 3.33
3999 4661 1.376086 CTGCATGACCCAGACCACA 59.624 57.895 0.00 0.00 32.03 4.17
4000 4662 2.042831 GCTGCATGACCCAGACCAC 61.043 63.158 0.00 0.00 32.03 4.16
4001 4663 0.909133 TAGCTGCATGACCCAGACCA 60.909 55.000 1.02 0.00 32.03 4.02
4002 4664 0.253044 TTAGCTGCATGACCCAGACC 59.747 55.000 1.02 0.00 32.03 3.85
4003 4665 1.373570 GTTAGCTGCATGACCCAGAC 58.626 55.000 1.02 0.00 32.03 3.51
4004 4666 0.253044 GGTTAGCTGCATGACCCAGA 59.747 55.000 1.02 0.00 32.03 3.86
4005 4667 0.035152 TGGTTAGCTGCATGACCCAG 60.035 55.000 13.92 0.00 0.00 4.45
4006 4668 0.403655 TTGGTTAGCTGCATGACCCA 59.596 50.000 13.92 4.97 0.00 4.51
4007 4669 1.767759 ATTGGTTAGCTGCATGACCC 58.232 50.000 13.92 2.74 0.00 4.46
4008 4670 4.319766 CGATTATTGGTTAGCTGCATGACC 60.320 45.833 1.02 7.26 0.00 4.02
4009 4671 4.273480 ACGATTATTGGTTAGCTGCATGAC 59.727 41.667 1.02 0.00 0.00 3.06
4010 4672 4.273235 CACGATTATTGGTTAGCTGCATGA 59.727 41.667 1.02 0.00 0.00 3.07
4011 4673 4.530388 CACGATTATTGGTTAGCTGCATG 58.470 43.478 1.02 0.00 0.00 4.06
4012 4674 3.565482 CCACGATTATTGGTTAGCTGCAT 59.435 43.478 1.02 0.00 0.00 3.96
4013 4675 2.942376 CCACGATTATTGGTTAGCTGCA 59.058 45.455 1.02 0.00 0.00 4.41
4014 4676 2.943033 ACCACGATTATTGGTTAGCTGC 59.057 45.455 0.00 0.00 45.62 5.25
4023 4685 2.170607 AGGACCCAGACCACGATTATTG 59.829 50.000 0.00 0.00 0.00 1.90
4031 4693 4.083862 GCCGAGGACCCAGACCAC 62.084 72.222 0.00 0.00 0.00 4.16
4041 4703 1.186917 TAACCAAAGGTCGCCGAGGA 61.187 55.000 0.00 0.00 33.12 3.71
4042 4704 0.739813 CTAACCAAAGGTCGCCGAGG 60.740 60.000 0.00 0.00 33.12 4.63
4043 4705 0.245539 TCTAACCAAAGGTCGCCGAG 59.754 55.000 0.00 0.00 33.12 4.63
4044 4706 0.245539 CTCTAACCAAAGGTCGCCGA 59.754 55.000 0.00 0.00 33.12 5.54
4045 4707 1.359459 GCTCTAACCAAAGGTCGCCG 61.359 60.000 0.00 0.00 33.12 6.46
4046 4708 0.036294 AGCTCTAACCAAAGGTCGCC 60.036 55.000 0.00 0.00 33.12 5.54
4047 4709 1.079503 CAGCTCTAACCAAAGGTCGC 58.920 55.000 0.00 0.00 33.12 5.19
4048 4710 1.079503 GCAGCTCTAACCAAAGGTCG 58.920 55.000 0.00 0.00 33.12 4.79
4049 4711 2.481289 AGCAGCTCTAACCAAAGGTC 57.519 50.000 0.00 0.00 33.12 3.85
4050 4712 2.959465 AAGCAGCTCTAACCAAAGGT 57.041 45.000 0.00 0.00 37.65 3.50
4094 4759 4.818546 GGTATGGTCTGTGATCCATGAAAG 59.181 45.833 6.91 0.00 43.28 2.62
4095 4760 4.227073 TGGTATGGTCTGTGATCCATGAAA 59.773 41.667 6.91 0.00 43.28 2.69
4097 4762 3.383223 TGGTATGGTCTGTGATCCATGA 58.617 45.455 6.91 0.00 43.28 3.07
4114 4779 9.553064 GAGTAGTACTACATAACTAAGCTGGTA 57.447 37.037 29.87 0.00 38.48 3.25
4115 4780 7.501892 GGAGTAGTACTACATAACTAAGCTGGT 59.498 40.741 29.87 8.32 38.48 4.00
4116 4781 7.307870 CGGAGTAGTACTACATAACTAAGCTGG 60.308 44.444 29.87 5.25 38.48 4.85
4117 4782 7.226325 ACGGAGTAGTACTACATAACTAAGCTG 59.774 40.741 29.87 15.55 41.94 4.24
4119 4784 7.489574 ACGGAGTAGTACTACATAACTAAGC 57.510 40.000 29.87 10.56 41.94 3.09
4136 4801 1.377594 TCGCAGCCACTACGGAGTA 60.378 57.895 0.00 0.00 45.11 2.59
4138 4803 2.202623 GTCGCAGCCACTACGGAG 60.203 66.667 0.00 0.00 36.56 4.63
4139 4804 4.111016 CGTCGCAGCCACTACGGA 62.111 66.667 0.00 0.00 36.56 4.69
4140 4805 4.111016 TCGTCGCAGCCACTACGG 62.111 66.667 0.00 0.00 36.08 4.02
4141 4806 2.874780 GTCGTCGCAGCCACTACG 60.875 66.667 0.00 0.00 36.71 3.51
4151 4816 0.109689 AGACTACTTGCTGTCGTCGC 60.110 55.000 8.52 0.00 43.52 5.19
4155 4820 5.493133 AATAGAGAGACTACTTGCTGTCG 57.507 43.478 0.00 0.00 38.16 4.35
4162 4827 8.895737 GCACTGTTACTAATAGAGAGACTACTT 58.104 37.037 0.00 0.00 33.62 2.24
4163 4828 8.269317 AGCACTGTTACTAATAGAGAGACTACT 58.731 37.037 0.00 0.00 33.62 2.57
4169 4834 7.811117 ACCTAGCACTGTTACTAATAGAGAG 57.189 40.000 0.00 0.00 0.00 3.20
4170 4835 8.591114 AAACCTAGCACTGTTACTAATAGAGA 57.409 34.615 0.00 0.00 0.00 3.10
4171 4836 7.644551 CGAAACCTAGCACTGTTACTAATAGAG 59.355 40.741 0.00 0.00 0.00 2.43
4177 4843 4.520111 TGACGAAACCTAGCACTGTTACTA 59.480 41.667 0.00 0.00 0.00 1.82
4178 4844 3.319972 TGACGAAACCTAGCACTGTTACT 59.680 43.478 0.00 0.00 0.00 2.24
4184 4850 2.492484 CCTACTGACGAAACCTAGCACT 59.508 50.000 0.00 0.00 0.00 4.40
4185 4851 2.416972 CCCTACTGACGAAACCTAGCAC 60.417 54.545 0.00 0.00 0.00 4.40
4208 4874 9.119329 GAACGAACATGAGTCATAGTATATGAC 57.881 37.037 18.07 18.07 46.41 3.06
4209 4875 8.846211 TGAACGAACATGAGTCATAGTATATGA 58.154 33.333 5.03 0.00 0.00 2.15
4210 4876 9.463443 TTGAACGAACATGAGTCATAGTATATG 57.537 33.333 5.03 0.00 0.00 1.78
4211 4877 9.684448 CTTGAACGAACATGAGTCATAGTATAT 57.316 33.333 5.03 0.00 0.00 0.86
4212 4878 8.135529 CCTTGAACGAACATGAGTCATAGTATA 58.864 37.037 5.03 0.00 0.00 1.47
4213 4879 6.980978 CCTTGAACGAACATGAGTCATAGTAT 59.019 38.462 5.03 0.00 0.00 2.12
4214 4880 6.330278 CCTTGAACGAACATGAGTCATAGTA 58.670 40.000 5.03 0.00 0.00 1.82
4215 4881 5.171476 CCTTGAACGAACATGAGTCATAGT 58.829 41.667 5.03 3.97 0.00 2.12
4216 4882 4.033358 GCCTTGAACGAACATGAGTCATAG 59.967 45.833 5.03 3.33 0.00 2.23
4239 4905 8.781196 TCCGTTACTAATAGAGTAGCATACAAG 58.219 37.037 0.00 0.00 46.26 3.16
4242 4908 8.321650 ACTCCGTTACTAATAGAGTAGCATAC 57.678 38.462 0.00 0.00 40.84 2.39
4244 4910 9.517868 AATACTCCGTTACTAATAGAGTAGCAT 57.482 33.333 12.72 4.29 41.82 3.79
4245 4911 8.915057 AATACTCCGTTACTAATAGAGTAGCA 57.085 34.615 12.72 0.00 41.82 3.49
4249 4915 9.859152 AACCTAATACTCCGTTACTAATAGAGT 57.141 33.333 0.00 0.00 42.69 3.24
4254 4920 9.592196 TCCATAACCTAATACTCCGTTACTAAT 57.408 33.333 0.00 0.00 0.00 1.73
4255 4921 8.995027 TCCATAACCTAATACTCCGTTACTAA 57.005 34.615 0.00 0.00 0.00 2.24
4256 4922 8.995027 TTCCATAACCTAATACTCCGTTACTA 57.005 34.615 0.00 0.00 0.00 1.82
4257 4923 7.902920 TTCCATAACCTAATACTCCGTTACT 57.097 36.000 0.00 0.00 0.00 2.24
4258 4924 7.540055 CGATTCCATAACCTAATACTCCGTTAC 59.460 40.741 0.00 0.00 0.00 2.50
4259 4925 7.309377 CCGATTCCATAACCTAATACTCCGTTA 60.309 40.741 0.00 0.00 0.00 3.18
4260 4926 6.453092 CGATTCCATAACCTAATACTCCGTT 58.547 40.000 0.00 0.00 0.00 4.44
4261 4927 5.047519 CCGATTCCATAACCTAATACTCCGT 60.048 44.000 0.00 0.00 0.00 4.69
4262 4928 5.047519 ACCGATTCCATAACCTAATACTCCG 60.048 44.000 0.00 0.00 0.00 4.63
4263 4929 6.164176 CACCGATTCCATAACCTAATACTCC 58.836 44.000 0.00 0.00 0.00 3.85
4264 4930 6.164176 CCACCGATTCCATAACCTAATACTC 58.836 44.000 0.00 0.00 0.00 2.59
4265 4931 5.605488 ACCACCGATTCCATAACCTAATACT 59.395 40.000 0.00 0.00 0.00 2.12
4266 4932 5.699458 CACCACCGATTCCATAACCTAATAC 59.301 44.000 0.00 0.00 0.00 1.89
4267 4933 5.743714 GCACCACCGATTCCATAACCTAATA 60.744 44.000 0.00 0.00 0.00 0.98
4268 4934 4.714632 CACCACCGATTCCATAACCTAAT 58.285 43.478 0.00 0.00 0.00 1.73
4269 4935 3.683281 GCACCACCGATTCCATAACCTAA 60.683 47.826 0.00 0.00 0.00 2.69
4270 4936 2.158871 GCACCACCGATTCCATAACCTA 60.159 50.000 0.00 0.00 0.00 3.08
4271 4937 1.408266 GCACCACCGATTCCATAACCT 60.408 52.381 0.00 0.00 0.00 3.50
4272 4938 1.021968 GCACCACCGATTCCATAACC 58.978 55.000 0.00 0.00 0.00 2.85
4273 4939 2.038387 AGCACCACCGATTCCATAAC 57.962 50.000 0.00 0.00 0.00 1.89
4274 4940 2.769663 ACTAGCACCACCGATTCCATAA 59.230 45.455 0.00 0.00 0.00 1.90
4275 4941 2.102420 CACTAGCACCACCGATTCCATA 59.898 50.000 0.00 0.00 0.00 2.74
4276 4942 1.134401 CACTAGCACCACCGATTCCAT 60.134 52.381 0.00 0.00 0.00 3.41
4277 4943 0.249120 CACTAGCACCACCGATTCCA 59.751 55.000 0.00 0.00 0.00 3.53
4278 4944 0.249398 ACACTAGCACCACCGATTCC 59.751 55.000 0.00 0.00 0.00 3.01
4279 4945 1.359848 CACACTAGCACCACCGATTC 58.640 55.000 0.00 0.00 0.00 2.52
4280 4946 0.036388 CCACACTAGCACCACCGATT 60.036 55.000 0.00 0.00 0.00 3.34
4281 4947 1.596934 CCACACTAGCACCACCGAT 59.403 57.895 0.00 0.00 0.00 4.18
4282 4948 3.056458 CCACACTAGCACCACCGA 58.944 61.111 0.00 0.00 0.00 4.69
4283 4949 2.731691 AAGCCACACTAGCACCACCG 62.732 60.000 0.00 0.00 0.00 4.94
4284 4950 1.073199 AAGCCACACTAGCACCACC 59.927 57.895 0.00 0.00 0.00 4.61
4285 4951 0.535102 ACAAGCCACACTAGCACCAC 60.535 55.000 0.00 0.00 0.00 4.16
4286 4952 0.182537 AACAAGCCACACTAGCACCA 59.817 50.000 0.00 0.00 0.00 4.17
4287 4953 1.001378 CAAACAAGCCACACTAGCACC 60.001 52.381 0.00 0.00 0.00 5.01
4288 4954 1.600413 GCAAACAAGCCACACTAGCAC 60.600 52.381 0.00 0.00 0.00 4.40
4289 4955 0.667993 GCAAACAAGCCACACTAGCA 59.332 50.000 0.00 0.00 0.00 3.49
4290 4956 0.385974 CGCAAACAAGCCACACTAGC 60.386 55.000 0.00 0.00 0.00 3.42
4291 4957 1.069906 GTCGCAAACAAGCCACACTAG 60.070 52.381 0.00 0.00 0.00 2.57
4292 4958 0.941542 GTCGCAAACAAGCCACACTA 59.058 50.000 0.00 0.00 0.00 2.74
4293 4959 0.748005 AGTCGCAAACAAGCCACACT 60.748 50.000 0.00 0.00 0.00 3.55
4294 4960 0.100503 AAGTCGCAAACAAGCCACAC 59.899 50.000 0.00 0.00 0.00 3.82
4295 4961 1.669604 TAAGTCGCAAACAAGCCACA 58.330 45.000 0.00 0.00 0.00 4.17
4296 4962 2.766970 TTAAGTCGCAAACAAGCCAC 57.233 45.000 0.00 0.00 0.00 5.01
4297 4963 4.295051 GAAATTAAGTCGCAAACAAGCCA 58.705 39.130 0.00 0.00 0.00 4.75
4298 4964 3.673338 GGAAATTAAGTCGCAAACAAGCC 59.327 43.478 0.00 0.00 0.00 4.35
4299 4965 3.360758 CGGAAATTAAGTCGCAAACAAGC 59.639 43.478 0.00 0.00 0.00 4.01
4300 4966 3.911964 CCGGAAATTAAGTCGCAAACAAG 59.088 43.478 0.00 0.00 0.00 3.16
4301 4967 3.315749 ACCGGAAATTAAGTCGCAAACAA 59.684 39.130 9.46 0.00 0.00 2.83
4302 4968 2.879646 ACCGGAAATTAAGTCGCAAACA 59.120 40.909 9.46 0.00 0.00 2.83
4303 4969 3.231160 CACCGGAAATTAAGTCGCAAAC 58.769 45.455 9.46 0.00 0.00 2.93
4304 4970 2.226912 CCACCGGAAATTAAGTCGCAAA 59.773 45.455 9.46 0.00 0.00 3.68
4305 4971 1.807742 CCACCGGAAATTAAGTCGCAA 59.192 47.619 9.46 0.00 0.00 4.85
4306 4972 1.444836 CCACCGGAAATTAAGTCGCA 58.555 50.000 9.46 0.00 0.00 5.10
4307 4973 0.730840 CCCACCGGAAATTAAGTCGC 59.269 55.000 9.46 0.00 0.00 5.19
4308 4974 2.277084 CTCCCACCGGAAATTAAGTCG 58.723 52.381 9.46 0.00 37.86 4.18
4309 4975 2.014857 GCTCCCACCGGAAATTAAGTC 58.985 52.381 9.46 0.00 37.86 3.01
4310 4976 1.633945 AGCTCCCACCGGAAATTAAGT 59.366 47.619 9.46 0.00 37.86 2.24
4311 4977 2.017049 CAGCTCCCACCGGAAATTAAG 58.983 52.381 9.46 0.00 37.86 1.85
4312 4978 1.953311 GCAGCTCCCACCGGAAATTAA 60.953 52.381 9.46 0.00 37.86 1.40
4313 4979 0.393808 GCAGCTCCCACCGGAAATTA 60.394 55.000 9.46 0.00 37.86 1.40
4314 4980 1.678970 GCAGCTCCCACCGGAAATT 60.679 57.895 9.46 0.00 37.86 1.82
4315 4981 2.044946 GCAGCTCCCACCGGAAAT 60.045 61.111 9.46 0.00 37.86 2.17
4316 4982 2.424842 AATGCAGCTCCCACCGGAAA 62.425 55.000 9.46 0.00 37.86 3.13
4317 4983 2.424842 AAATGCAGCTCCCACCGGAA 62.425 55.000 9.46 0.00 37.86 4.30
4318 4984 2.905996 AAATGCAGCTCCCACCGGA 61.906 57.895 9.46 0.00 36.45 5.14
4319 4985 2.361610 AAATGCAGCTCCCACCGG 60.362 61.111 0.00 0.00 0.00 5.28
4320 4986 0.676466 TACAAATGCAGCTCCCACCG 60.676 55.000 0.00 0.00 0.00 4.94
4321 4987 0.811281 GTACAAATGCAGCTCCCACC 59.189 55.000 0.00 0.00 0.00 4.61
4322 4988 1.740025 GAGTACAAATGCAGCTCCCAC 59.260 52.381 0.00 0.00 0.00 4.61
4323 4989 1.340017 GGAGTACAAATGCAGCTCCCA 60.340 52.381 0.00 0.00 39.69 4.37
4324 4990 1.383523 GGAGTACAAATGCAGCTCCC 58.616 55.000 0.00 0.00 39.69 4.30
4325 4991 1.065126 AGGGAGTACAAATGCAGCTCC 60.065 52.381 0.00 2.29 43.56 4.70
4326 4992 2.093235 AGAGGGAGTACAAATGCAGCTC 60.093 50.000 0.00 0.00 0.00 4.09
4327 4993 1.912043 AGAGGGAGTACAAATGCAGCT 59.088 47.619 0.00 0.00 0.00 4.24
4328 4994 2.012673 CAGAGGGAGTACAAATGCAGC 58.987 52.381 0.00 0.00 0.00 5.25
4329 4995 2.012673 GCAGAGGGAGTACAAATGCAG 58.987 52.381 0.00 0.00 32.58 4.41
4330 4996 1.340017 GGCAGAGGGAGTACAAATGCA 60.340 52.381 0.00 0.00 33.94 3.96
4331 4997 1.383523 GGCAGAGGGAGTACAAATGC 58.616 55.000 0.00 0.00 0.00 3.56
4332 4998 1.408822 GGGGCAGAGGGAGTACAAATG 60.409 57.143 0.00 0.00 0.00 2.32
4333 4999 0.919710 GGGGCAGAGGGAGTACAAAT 59.080 55.000 0.00 0.00 0.00 2.32
4334 5000 0.474854 TGGGGCAGAGGGAGTACAAA 60.475 55.000 0.00 0.00 0.00 2.83
4335 5001 0.253160 ATGGGGCAGAGGGAGTACAA 60.253 55.000 0.00 0.00 0.00 2.41
4336 5002 0.639943 TATGGGGCAGAGGGAGTACA 59.360 55.000 0.00 0.00 0.00 2.90
4337 5003 1.802553 TTATGGGGCAGAGGGAGTAC 58.197 55.000 0.00 0.00 0.00 2.73
4338 5004 2.815357 ATTATGGGGCAGAGGGAGTA 57.185 50.000 0.00 0.00 0.00 2.59
4339 5005 2.711547 GTTATTATGGGGCAGAGGGAGT 59.288 50.000 0.00 0.00 0.00 3.85
4340 5006 2.040412 GGTTATTATGGGGCAGAGGGAG 59.960 54.545 0.00 0.00 0.00 4.30
4341 5007 2.062636 GGTTATTATGGGGCAGAGGGA 58.937 52.381 0.00 0.00 0.00 4.20
4342 5008 1.780309 TGGTTATTATGGGGCAGAGGG 59.220 52.381 0.00 0.00 0.00 4.30
4343 5009 3.814504 ATGGTTATTATGGGGCAGAGG 57.185 47.619 0.00 0.00 0.00 3.69
4378 5044 9.453325 CGTTTTTCAAGCTATGGTAACTTAAAA 57.547 29.630 0.00 0.00 37.61 1.52
4379 5045 8.623030 ACGTTTTTCAAGCTATGGTAACTTAAA 58.377 29.630 0.00 0.00 37.61 1.52
4380 5046 8.156994 ACGTTTTTCAAGCTATGGTAACTTAA 57.843 30.769 0.00 0.00 37.61 1.85
4381 5047 7.733402 ACGTTTTTCAAGCTATGGTAACTTA 57.267 32.000 0.00 0.00 37.61 2.24
4382 5048 6.628919 ACGTTTTTCAAGCTATGGTAACTT 57.371 33.333 0.00 0.00 37.61 2.66
4383 5049 6.485648 AGAACGTTTTTCAAGCTATGGTAACT 59.514 34.615 0.46 0.00 37.61 2.24
4384 5050 6.665465 AGAACGTTTTTCAAGCTATGGTAAC 58.335 36.000 0.46 0.00 0.00 2.50
4385 5051 6.870971 AGAACGTTTTTCAAGCTATGGTAA 57.129 33.333 0.46 0.00 0.00 2.85
4386 5052 6.870971 AAGAACGTTTTTCAAGCTATGGTA 57.129 33.333 0.46 0.00 0.00 3.25
4387 5053 5.767816 AAGAACGTTTTTCAAGCTATGGT 57.232 34.783 0.46 0.00 0.00 3.55
4404 5070 8.897872 TCCTTCCGTTCCATAATATAAAGAAC 57.102 34.615 0.00 0.00 34.78 3.01
4405 5071 8.711170 ACTCCTTCCGTTCCATAATATAAAGAA 58.289 33.333 0.00 0.00 0.00 2.52
4406 5072 8.258850 ACTCCTTCCGTTCCATAATATAAAGA 57.741 34.615 0.00 0.00 0.00 2.52
4407 5073 9.640963 CTACTCCTTCCGTTCCATAATATAAAG 57.359 37.037 0.00 0.00 0.00 1.85
4408 5074 8.591072 CCTACTCCTTCCGTTCCATAATATAAA 58.409 37.037 0.00 0.00 0.00 1.40
4409 5075 7.731688 ACCTACTCCTTCCGTTCCATAATATAA 59.268 37.037 0.00 0.00 0.00 0.98
4410 5076 7.243824 ACCTACTCCTTCCGTTCCATAATATA 58.756 38.462 0.00 0.00 0.00 0.86
4411 5077 6.082707 ACCTACTCCTTCCGTTCCATAATAT 58.917 40.000 0.00 0.00 0.00 1.28
4412 5078 5.461327 ACCTACTCCTTCCGTTCCATAATA 58.539 41.667 0.00 0.00 0.00 0.98
4413 5079 4.296056 ACCTACTCCTTCCGTTCCATAAT 58.704 43.478 0.00 0.00 0.00 1.28
4414 5080 3.716431 ACCTACTCCTTCCGTTCCATAA 58.284 45.455 0.00 0.00 0.00 1.90
4415 5081 3.393426 ACCTACTCCTTCCGTTCCATA 57.607 47.619 0.00 0.00 0.00 2.74
4416 5082 2.249309 ACCTACTCCTTCCGTTCCAT 57.751 50.000 0.00 0.00 0.00 3.41
4417 5083 3.780307 ACCTACTCCTTCCGTTCCA 57.220 52.632 0.00 0.00 0.00 3.53



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.