AutoCloner

Multiple sequence alignment - TraesCS7D01G181700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G181700	chr7D	100.000	3131	0	0	1	3131	135397777	135400907	0.000000e+00	5782.0
1	TraesCS7D01G181700	chr7D	89.343	1004	84	17	2137	3131	236008451	236009440	0.000000e+00	1240.0
2	TraesCS7D01G181700	chr7D	89.128	745	72	4	1	739	599064469	599065210	0.000000e+00	918.0
3	TraesCS7D01G181700	chr7A	90.961	1217	65	13	935	2137	134544018	134545203	0.000000e+00	1596.0
4	TraesCS7D01G181700	chr7A	89.664	745	68	4	1	738	213108830	213108088	0.000000e+00	941.0
5	TraesCS7D01G181700	chr7A	97.619	42	0	1	1213	1253	134544225	134544266	1.560000e-08	71.3
6	TraesCS7D01G181700	chr5D	89.761	1006	79	18	2137	3131	219540139	219539147	0.000000e+00	1266.0
7	TraesCS7D01G181700	chr6D	89.573	1007	87	13	2137	3131	49849687	49850687	0.000000e+00	1262.0
8	TraesCS7D01G181700	chr2D	89.484	1008	82	16	2135	3131	385698225	385697231	0.000000e+00	1253.0
9	TraesCS7D01G181700	chr4B	89.343	1004	90	14	2137	3131	619456877	619455882	0.000000e+00	1245.0
10	TraesCS7D01G181700	chr4B	93.023	43	3	0	1924	1966	522439854	522439812	2.610000e-06	63.9
11	TraesCS7D01G181700	chr3B	89.033	1003	85	17	2137	3131	223509406	223510391	0.000000e+00	1219.0
12	TraesCS7D01G181700	chr7B	88.569	1006	95	13	2135	3131	728991358	728990364	0.000000e+00	1203.0
13	TraesCS7D01G181700	chr7B	94.282	752	20	4	740	1487	97309196	97309928	0.000000e+00	1129.0
14	TraesCS7D01G181700	chr7B	96.067	661	23	2	1477	2137	97320374	97321031	0.000000e+00	1074.0
15	TraesCS7D01G181700	chr7B	89.664	745	68	3	1	739	458350281	458351022	0.000000e+00	941.0
16	TraesCS7D01G181700	chr1B	88.446	1004	94	15	2139	3131	539943629	539942637	0.000000e+00	1192.0
17	TraesCS7D01G181700	chr2A	88.027	1019	101	18	2125	3131	718110925	718111934	0.000000e+00	1186.0
18	TraesCS7D01G181700	chr3D	90.201	745	64	3	1	739	168497492	168498233	0.000000e+00	963.0
19	TraesCS7D01G181700	chr3D	89.305	748	68	6	1	740	603538766	603538023	0.000000e+00	928.0
20	TraesCS7D01G181700	chr1A	90.270	740	64	4	6	739	147681388	147682125	0.000000e+00	961.0
21	TraesCS7D01G181700	chr3A	89.586	749	66	5	1	739	309346743	309345997	0.000000e+00	941.0
22	TraesCS7D01G181700	chr4D	89.572	748	61	7	1	739	291949226	291949965	0.000000e+00	933.0
23	TraesCS7D01G181700	chr4A	90.069	725	62	4	1	718	235652766	235653487	0.000000e+00	931.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G181700	chr7D	135397777	135400907	3130	False	5782.00	5782	100.000	1	3131	1	chr7D.!!$F1	3130
1	TraesCS7D01G181700	chr7D	236008451	236009440	989	False	1240.00	1240	89.343	2137	3131	1	chr7D.!!$F2	994
2	TraesCS7D01G181700	chr7D	599064469	599065210	741	False	918.00	918	89.128	1	739	1	chr7D.!!$F3	738
3	TraesCS7D01G181700	chr7A	213108088	213108830	742	True	941.00	941	89.664	1	738	1	chr7A.!!$R1	737
4	TraesCS7D01G181700	chr7A	134544018	134545203	1185	False	833.65	1596	94.290	935	2137	2	chr7A.!!$F1	1202
5	TraesCS7D01G181700	chr5D	219539147	219540139	992	True	1266.00	1266	89.761	2137	3131	1	chr5D.!!$R1	994
6	TraesCS7D01G181700	chr6D	49849687	49850687	1000	False	1262.00	1262	89.573	2137	3131	1	chr6D.!!$F1	994
7	TraesCS7D01G181700	chr2D	385697231	385698225	994	True	1253.00	1253	89.484	2135	3131	1	chr2D.!!$R1	996
8	TraesCS7D01G181700	chr4B	619455882	619456877	995	True	1245.00	1245	89.343	2137	3131	1	chr4B.!!$R2	994
9	TraesCS7D01G181700	chr3B	223509406	223510391	985	False	1219.00	1219	89.033	2137	3131	1	chr3B.!!$F1	994
10	TraesCS7D01G181700	chr7B	728990364	728991358	994	True	1203.00	1203	88.569	2135	3131	1	chr7B.!!$R1	996
11	TraesCS7D01G181700	chr7B	97309196	97309928	732	False	1129.00	1129	94.282	740	1487	1	chr7B.!!$F1	747
12	TraesCS7D01G181700	chr7B	97320374	97321031	657	False	1074.00	1074	96.067	1477	2137	1	chr7B.!!$F2	660
13	TraesCS7D01G181700	chr7B	458350281	458351022	741	False	941.00	941	89.664	1	739	1	chr7B.!!$F3	738
14	TraesCS7D01G181700	chr1B	539942637	539943629	992	True	1192.00	1192	88.446	2139	3131	1	chr1B.!!$R1	992
15	TraesCS7D01G181700	chr2A	718110925	718111934	1009	False	1186.00	1186	88.027	2125	3131	1	chr2A.!!$F1	1006
16	TraesCS7D01G181700	chr3D	168497492	168498233	741	False	963.00	963	90.201	1	739	1	chr3D.!!$F1	738
17	TraesCS7D01G181700	chr3D	603538023	603538766	743	True	928.00	928	89.305	1	740	1	chr3D.!!$R1	739
18	TraesCS7D01G181700	chr1A	147681388	147682125	737	False	961.00	961	90.270	6	739	1	chr1A.!!$F1	733
19	TraesCS7D01G181700	chr3A	309345997	309346743	746	True	941.00	941	89.586	1	739	1	chr3A.!!$R1	738
20	TraesCS7D01G181700	chr4D	291949226	291949965	739	False	933.00	933	89.572	1	739	1	chr4D.!!$F1	738
21	TraesCS7D01G181700	chr4A	235652766	235653487	721	False	931.00	931	90.069	1	718	1	chr4A.!!$F1	717

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
511	520	0.036164	TGCTAGAAGAAGGGCGCAAA	59.964	50.0	10.83	0.0	0.0	3.68	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2143	2176	1.79619	TTGCAACGCACGGGCATTTA	61.796	50.0	11.77	0.0	38.71	1.4	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
154	159	0.323629	GGGTAGCTGCTGTTGGTGTA	59.676	55.000	13.43	0.00	0.00	2.90
167	172	4.208686	GTGTAGCGGCGGAGGAGG	62.209	72.222	9.78	0.00	0.00	4.30
468	476	1.211949	ACATGATCGAACCCGGGAAAT	59.788	47.619	32.02	13.38	36.24	2.17
501	510	5.590663	AGATCGTTATGTGTCTGCTAGAAGA	59.409	40.000	0.00	0.00	0.00	2.87
509	518	1.219124	CTGCTAGAAGAAGGGCGCA	59.781	57.895	10.83	0.00	0.00	6.09
511	520	0.036164	TGCTAGAAGAAGGGCGCAAA	59.964	50.000	10.83	0.00	0.00	3.68
516	525	1.152546	AAGAAGGGCGCAAAAGGGT	60.153	52.632	10.83	0.00	0.00	4.34
542	551	2.645192	GGGACATTTTGCCCACGGG	61.645	63.158	0.00	0.00	44.07	5.28
558	573	2.362963	GGCGGGGGAAGGGATTTT	59.637	61.111	0.00	0.00	0.00	1.82
572	587	9.475620	GGGAAGGGATTTTCTTCTTAATTCTTA	57.524	33.333	0.00	0.00	40.17	2.10
634	650	3.921119	TTTCATTGACTCGCAAGCAAT	57.079	38.095	0.00	0.00	40.42	3.56
652	668	5.070001	AGCAATGCTTACTTGACCACTAAA	58.930	37.500	0.00	0.00	33.89	1.85
653	669	5.711976	AGCAATGCTTACTTGACCACTAAAT	59.288	36.000	0.00	0.00	33.89	1.40
711	727	1.186267	GCTATACCGGCAGCCTAGGT	61.186	60.000	14.86	14.86	41.73	3.08
713	729	0.481567	TATACCGGCAGCCTAGGTCT	59.518	55.000	13.98	7.80	39.31	3.85
812	832	1.148759	GCTGCGAGTCTTCCGATTCC	61.149	60.000	0.00	0.00	0.00	3.01
814	834	1.139095	GCGAGTCTTCCGATTCCGT	59.861	57.895	0.00	0.00	0.00	4.69
830	850	4.072088	GTCGCGTCTTGGTTGCCG	62.072	66.667	5.77	0.00	0.00	5.69
876	896	3.040147	TCACGACTTGGATTCTTCACC	57.960	47.619	0.00	0.00	0.00	4.02
887	907	4.785453	CTTCACCCCGCAGCTCCC	62.785	72.222	0.00	0.00	0.00	4.30
896	916	1.754621	CGCAGCTCCCTCACCTCTA	60.755	63.158	0.00	0.00	0.00	2.43
897	917	1.819905	GCAGCTCCCTCACCTCTAC	59.180	63.158	0.00	0.00	0.00	2.59
899	919	1.410365	GCAGCTCCCTCACCTCTACTA	60.410	57.143	0.00	0.00	0.00	1.82
900	920	2.754867	GCAGCTCCCTCACCTCTACTAT	60.755	54.545	0.00	0.00	0.00	2.12
901	921	3.498841	GCAGCTCCCTCACCTCTACTATA	60.499	52.174	0.00	0.00	0.00	1.31
902	922	4.730966	CAGCTCCCTCACCTCTACTATAA	58.269	47.826	0.00	0.00	0.00	0.98
908	928	6.738635	TCCCTCACCTCTACTATAAAAGTCA	58.261	40.000	0.00	0.00	39.80	3.41
913	933	9.959749	CTCACCTCTACTATAAAAGTCAATCTC	57.040	37.037	0.00	0.00	39.80	2.75
916	936	7.844779	ACCTCTACTATAAAAGTCAATCTCCCA	59.155	37.037	0.00	0.00	39.80	4.37
928	948	0.337773	ATCTCCCACCAGCAGAGAGA	59.662	55.000	0.00	0.00	39.86	3.10
986	1007	5.066505	GCCATCGACCACAGATTAGATTTTT	59.933	40.000	0.00	0.00	0.00	1.94
1040	1061	1.231928	GGTCCTCCTCCTCCTCCTC	59.768	68.421	0.00	0.00	0.00	3.71
1041	1062	1.231928	GTCCTCCTCCTCCTCCTCC	59.768	68.421	0.00	0.00	0.00	4.30
1042	1063	1.087725	TCCTCCTCCTCCTCCTCCT	59.912	63.158	0.00	0.00	0.00	3.69
1043	1064	0.996762	TCCTCCTCCTCCTCCTCCTC	60.997	65.000	0.00	0.00	0.00	3.71
1044	1065	1.541672	CTCCTCCTCCTCCTCCTCC	59.458	68.421	0.00	0.00	0.00	4.30
1045	1066	1.230650	TCCTCCTCCTCCTCCTCCA	60.231	63.158	0.00	0.00	0.00	3.86
1046	1067	0.631998	TCCTCCTCCTCCTCCTCCAT	60.632	60.000	0.00	0.00	0.00	3.41
1047	1068	0.178935	CCTCCTCCTCCTCCTCCATC	60.179	65.000	0.00	0.00	0.00	3.51
1048	1069	0.859760	CTCCTCCTCCTCCTCCATCT	59.140	60.000	0.00	0.00	0.00	2.90
1049	1070	0.856982	TCCTCCTCCTCCTCCATCTC	59.143	60.000	0.00	0.00	0.00	2.75
1050	1071	0.178935	CCTCCTCCTCCTCCATCTCC	60.179	65.000	0.00	0.00	0.00	3.71
1051	1072	0.859760	CTCCTCCTCCTCCATCTCCT	59.140	60.000	0.00	0.00	0.00	3.69
1052	1073	0.856982	TCCTCCTCCTCCATCTCCTC	59.143	60.000	0.00	0.00	0.00	3.71
1053	1074	0.178935	CCTCCTCCTCCATCTCCTCC	60.179	65.000	0.00	0.00	0.00	4.30
1054	1075	0.859760	CTCCTCCTCCATCTCCTCCT	59.140	60.000	0.00	0.00	0.00	3.69
1475	1500	0.325484	TACGCCCTAACAAGCCCCTA	60.325	55.000	0.00	0.00	0.00	3.53
1655	1688	0.109689	CTCTTCGTGTCCACCGACTC	60.110	60.000	0.00	0.00	39.94	3.36
1977	2010	3.173240	GTCGAGAACGTCCTGCGC	61.173	66.667	0.00	0.00	46.11	6.09
1978	2011	4.753877	TCGAGAACGTCCTGCGCG	62.754	66.667	0.00	0.00	46.11	6.86
1993	2026	2.480555	GCGTCGCAAGGATGGTTG	59.519	61.111	13.44	0.00	38.47	3.77
2027	2060	0.511221	CGTGTCACCTTGTTTAGCCG	59.489	55.000	0.00	0.00	0.00	5.52
2130	2163	4.946445	TGTTTTCTCATGCAGCATTTTGA	58.054	34.783	4.69	0.46	0.00	2.69
2143	2176	6.038356	GCAGCATTTTGAATGTAACTAGCAT	58.962	36.000	2.97	0.00	0.00	3.79
2197	2231	7.676683	TTGAACTTCCCTAGCATAGACTAAT	57.323	36.000	0.00	0.00	42.77	1.73
2340	2377	2.359850	TCGCCTCCATGCCACAAC	60.360	61.111	0.00	0.00	0.00	3.32
2356	2393	4.037923	GCCACAACCAAATGAGAAGAAAGA	59.962	41.667	0.00	0.00	0.00	2.52
2510	2550	3.927142	CGGAGAAACATAAGAGGTGTGTC	59.073	47.826	0.00	0.00	34.66	3.67
2529	2569	7.201145	GTGTGTCGTACATTGGTAGATAGATT	58.799	38.462	0.00	0.00	42.24	2.40
2564	2604	7.574607	ACTATAATTGGACGGAAGAATCCTTT	58.425	34.615	0.00	0.00	44.17	3.11
2632	2673	2.719531	TAGGGCAACAAAGTGACACA	57.280	45.000	8.59	0.00	39.74	3.72
2646	2687	6.627395	AAGTGACACAAATTTTACATCGGA	57.373	33.333	8.59	0.00	0.00	4.55
2725	2766	2.106338	ACCATGGATTGCACGGATCATA	59.894	45.455	21.47	0.00	0.00	2.15
2746	2787	1.300080	GCGTGCAGCCAACAACAAT	60.300	52.632	0.00	0.00	40.81	2.71
2823	2870	8.307483	TGTTGTGAGTTGGAAAATTTCTTACAA	58.693	29.630	5.65	8.97	34.17	2.41
2824	2871	9.313118	GTTGTGAGTTGGAAAATTTCTTACAAT	57.687	29.630	13.61	0.00	37.13	2.71

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
205	210	0.032515	TATCAGGGCCTTCCTCGTCA	60.033	55.000	1.32	0.00	46.12	4.35
247	252	0.462581	GATGACAGCCGCAATCCTGA	60.463	55.000	0.00	0.00	33.40	3.86
419	427	1.460689	ACCGAGTTCTTCCCACCCA	60.461	57.895	0.00	0.00	0.00	4.51
481	489	4.800993	CCTTCTTCTAGCAGACACATAACG	59.199	45.833	0.00	0.00	0.00	3.18
490	499	1.257750	TGCGCCCTTCTTCTAGCAGA	61.258	55.000	4.18	0.00	0.00	4.26
501	510	2.983592	CGACCCTTTTGCGCCCTT	60.984	61.111	4.18	0.00	0.00	3.95
516	525	3.653078	AAAATGTCCCCCGGCCGA	61.653	61.111	30.73	5.29	0.00	5.54
542	551	0.324368	AAGAAAATCCCTTCCCCCGC	60.324	55.000	0.00	0.00	0.00	6.13
610	626	3.503363	TGCTTGCGAGTCAATGAAATCTT	59.497	39.130	2.14	0.00	33.57	2.40
613	629	3.921119	TTGCTTGCGAGTCAATGAAAT	57.079	38.095	2.14	0.00	33.57	2.17
617	633	1.265568	GCATTGCTTGCGAGTCAATG	58.734	50.000	28.60	28.60	42.54	2.82
618	634	3.708195	GCATTGCTTGCGAGTCAAT	57.292	47.368	14.32	14.32	42.54	2.57
634	650	5.350365	CGCTTATTTAGTGGTCAAGTAAGCA	59.650	40.000	17.06	0.00	44.77	3.91
667	683	9.650539	GCCCGTTAATTTTAGGGTTAATTAAAA	57.349	29.630	0.00	0.00	45.48	1.52
683	699	1.417145	TGCCGGTATAGCCCGTTAATT	59.583	47.619	1.90	0.00	46.66	1.40
685	701	0.390124	CTGCCGGTATAGCCCGTTAA	59.610	55.000	1.90	0.00	46.66	2.01
707	723	4.199310	ACGTAACGTGCCTAATAGACCTA	58.801	43.478	0.00	0.00	39.18	3.08
711	727	5.118990	AGAGTACGTAACGTGCCTAATAGA	58.881	41.667	0.00	0.00	42.98	1.98
713	729	6.315144	TGTTAGAGTACGTAACGTGCCTAATA	59.685	38.462	0.00	0.00	42.98	0.98
721	737	3.077359	AGGCTGTTAGAGTACGTAACGT	58.923	45.455	0.00	0.00	44.35	3.99
723	739	3.486542	CGGAGGCTGTTAGAGTACGTAAC	60.487	52.174	0.00	12.02	0.00	2.50
766	782	6.431234	GCTATTACCCGATTCAATTCAATCCT	59.569	38.462	0.00	0.00	30.03	3.24
769	785	6.575162	GGCTATTACCCGATTCAATTCAAT	57.425	37.500	0.00	0.00	0.00	2.57
812	832	4.072088	GGCAACCAAGACGCGACG	62.072	66.667	15.93	0.00	0.00	5.12
887	907	9.959749	GAGATTGACTTTTATAGTAGAGGTGAG	57.040	37.037	0.00	0.00	37.17	3.51
896	916	6.636454	TGGTGGGAGATTGACTTTTATAGT	57.364	37.500	0.00	0.00	40.71	2.12
897	917	5.529060	GCTGGTGGGAGATTGACTTTTATAG	59.471	44.000	0.00	0.00	0.00	1.31
899	919	4.263905	TGCTGGTGGGAGATTGACTTTTAT	60.264	41.667	0.00	0.00	0.00	1.40
900	920	3.073798	TGCTGGTGGGAGATTGACTTTTA	59.926	43.478	0.00	0.00	0.00	1.52
901	921	2.158475	TGCTGGTGGGAGATTGACTTTT	60.158	45.455	0.00	0.00	0.00	2.27
902	922	1.425066	TGCTGGTGGGAGATTGACTTT	59.575	47.619	0.00	0.00	0.00	2.66
908	928	1.202330	CTCTCTGCTGGTGGGAGATT	58.798	55.000	0.00	0.00	41.47	2.40
913	933	0.177604	GTGATCTCTCTGCTGGTGGG	59.822	60.000	0.00	0.00	0.00	4.61
916	936	2.836636	TAGGTGATCTCTCTGCTGGT	57.163	50.000	0.00	0.00	0.00	4.00
928	948	3.704566	TGAAGCGGTGTAGAATAGGTGAT	59.295	43.478	0.00	0.00	0.00	3.06
986	1007	2.104928	CCATCGCGAGCAGCTACA	59.895	61.111	16.66	0.00	45.59	2.74
1040	1061	1.169661	CGACGAGGAGGAGATGGAGG	61.170	65.000	0.00	0.00	0.00	4.30
1041	1062	0.464735	ACGACGAGGAGGAGATGGAG	60.465	60.000	0.00	0.00	0.00	3.86
1042	1063	0.464013	GACGACGAGGAGGAGATGGA	60.464	60.000	0.00	0.00	0.00	3.41
1043	1064	1.777030	CGACGACGAGGAGGAGATGG	61.777	65.000	0.00	0.00	42.66	3.51
1044	1065	1.090625	ACGACGACGAGGAGGAGATG	61.091	60.000	15.32	0.00	42.66	2.90
1045	1066	0.810823	GACGACGACGAGGAGGAGAT	60.811	60.000	15.32	0.00	42.66	2.75
1046	1067	1.447489	GACGACGACGAGGAGGAGA	60.447	63.158	15.32	0.00	42.66	3.71
1047	1068	0.179116	TAGACGACGACGAGGAGGAG	60.179	60.000	15.32	0.00	42.66	3.69
1048	1069	0.247460	TTAGACGACGACGAGGAGGA	59.753	55.000	15.32	0.00	42.66	3.71
1049	1070	0.651551	CTTAGACGACGACGAGGAGG	59.348	60.000	15.32	0.00	42.66	4.30
1050	1071	0.026544	GCTTAGACGACGACGAGGAG	59.973	60.000	15.32	7.23	42.66	3.69
1051	1072	1.690283	CGCTTAGACGACGACGAGGA	61.690	60.000	15.32	0.00	42.66	3.71
1052	1073	1.296722	CGCTTAGACGACGACGAGG	60.297	63.158	15.32	0.00	42.66	4.63
1053	1074	1.296722	CCGCTTAGACGACGACGAG	60.297	63.158	15.32	1.62	42.66	4.18
1054	1075	2.780643	CCGCTTAGACGACGACGA	59.219	61.111	15.32	0.00	42.66	4.20
1977	2010	2.398554	CCCAACCATCCTTGCGACG	61.399	63.158	0.00	0.00	0.00	5.12
1978	2011	2.046285	CCCCAACCATCCTTGCGAC	61.046	63.158	0.00	0.00	0.00	5.19
2027	2060	4.063689	CTCTCCCATGTGATCATACTTGC	58.936	47.826	0.00	0.00	32.47	4.01
2143	2176	1.796190	TTGCAACGCACGGGCATTTA	61.796	50.000	11.77	0.00	38.71	1.40
2172	2205	7.490657	TTAGTCTATGCTAGGGAAGTTCAAA	57.509	36.000	5.01	0.00	0.00	2.69
2424	2462	3.057969	TCGATTCAATTGTGGAGCAGT	57.942	42.857	5.13	0.00	0.00	4.40
2510	2550	7.856398	CGGCTATAATCTATCTACCAATGTACG	59.144	40.741	0.00	0.00	0.00	3.67
2529	2569	6.209192	TCCGTCCAATTATAGTTTCGGCTATA	59.791	38.462	9.53	0.00	37.18	1.31
2605	2646	5.241728	GTCACTTTGTTGCCCTAATCTCTTT	59.758	40.000	0.00	0.00	0.00	2.52
2609	2650	3.821033	GTGTCACTTTGTTGCCCTAATCT	59.179	43.478	0.00	0.00	0.00	2.40
2646	2687	5.240713	GATGAGGTCATCGAAATTTTGCT	57.759	39.130	4.24	0.00	42.66	3.91
2725	2766	1.300080	GTTGTTGGCTGCACGCAAT	60.300	52.632	0.50	0.00	41.67	3.56
2771	2812	0.537188	ATCGAGATGCCGTCAACCTT	59.463	50.000	0.00	0.00	0.00	3.50
2881	2939	5.128663	ACCCATTCCAAAAATATGTGCCTAC	59.871	40.000	0.00	0.00	0.00	3.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.