Multiple sequence alignment - TraesCS7D01G181500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G181500 chr7D 100.000 5846 0 0 1 5846 135366744 135360899 0.000000e+00 10796.0
1 TraesCS7D01G181500 chr7D 92.593 108 7 1 3324 3431 135363311 135363205 2.820000e-33 154.0
2 TraesCS7D01G181500 chr7D 92.593 108 7 1 3434 3540 135363421 135363314 2.820000e-33 154.0
3 TraesCS7D01G181500 chr7A 93.526 1869 65 21 1821 3661 134517019 134515179 0.000000e+00 2730.0
4 TraesCS7D01G181500 chr7A 92.534 1567 54 21 3659 5212 134515144 134513628 0.000000e+00 2187.0
5 TraesCS7D01G181500 chr7A 94.089 1218 43 10 590 1793 134518221 134517019 0.000000e+00 1823.0
6 TraesCS7D01G181500 chr7A 83.232 656 62 23 1081 1729 651086346 651086960 5.120000e-155 558.0
7 TraesCS7D01G181500 chr7A 93.694 111 6 1 3321 3431 134515411 134515302 1.300000e-36 165.0
8 TraesCS7D01G181500 chr7A 85.616 146 13 1 5701 5846 134509718 134509581 4.720000e-31 147.0
9 TraesCS7D01G181500 chr7A 92.982 57 3 1 3484 3539 134515468 134515412 1.350000e-11 82.4
10 TraesCS7D01G181500 chr7B 93.532 1608 61 20 3659 5231 97200286 97198687 0.000000e+00 2353.0
11 TraesCS7D01G181500 chr7B 97.494 1197 18 5 1821 3006 97202405 97201210 0.000000e+00 2034.0
12 TraesCS7D01G181500 chr7B 96.497 628 16 2 3031 3657 97200947 97200325 0.000000e+00 1033.0
13 TraesCS7D01G181500 chr7B 94.681 658 25 7 1143 1793 97203059 97202405 0.000000e+00 1013.0
14 TraesCS7D01G181500 chr7B 84.284 929 73 26 175 1047 97204401 97203490 0.000000e+00 839.0
15 TraesCS7D01G181500 chr7B 92.593 108 7 1 3434 3540 97200653 97200546 2.820000e-33 154.0
16 TraesCS7D01G181500 chr7B 86.395 147 10 3 5701 5846 97197423 97197286 1.010000e-32 152.0
17 TraesCS7D01G181500 chr7B 88.889 108 6 2 3324 3431 97200543 97200442 1.710000e-25 128.0
18 TraesCS7D01G181500 chr7B 90.526 95 9 0 5439 5533 97198288 97198194 6.150000e-25 126.0
19 TraesCS7D01G181500 chr7B 92.683 41 1 1 5326 5366 97198554 97198516 2.280000e-04 58.4
20 TraesCS7D01G181500 chr4A 82.470 656 67 24 1081 1729 440712264 440711650 1.120000e-146 531.0
21 TraesCS7D01G181500 chr6A 82.562 648 65 23 1089 1729 12896675 12896069 1.440000e-145 527.0
22 TraesCS7D01G181500 chr6A 95.455 44 2 0 5218 5261 200254489 200254532 2.920000e-08 71.3
23 TraesCS7D01G181500 chr1D 83.186 113 12 5 260 367 214253785 214253675 4.820000e-16 97.1
24 TraesCS7D01G181500 chr2D 80.159 126 22 3 74 199 621962197 621962075 2.240000e-14 91.6
25 TraesCS7D01G181500 chr2D 90.909 55 3 1 5218 5270 469737366 469737312 8.130000e-09 73.1
26 TraesCS7D01G181500 chr2A 88.235 68 7 1 309 376 33543620 33543554 4.860000e-11 80.5
27 TraesCS7D01G181500 chr2A 89.286 56 4 1 5218 5271 611104668 611104613 1.050000e-07 69.4
28 TraesCS7D01G181500 chr3A 95.833 48 2 0 5218 5265 119479829 119479876 1.750000e-10 78.7
29 TraesCS7D01G181500 chr3A 95.556 45 2 0 5221 5265 122230996 122230952 8.130000e-09 73.1
30 TraesCS7D01G181500 chr3A 92.857 42 1 1 5220 5261 569420737 569420698 6.330000e-05 60.2
31 TraesCS7D01G181500 chr6D 95.455 44 2 0 5218 5261 147149393 147149350 2.920000e-08 71.3
32 TraesCS7D01G181500 chr5A 89.091 55 3 3 5198 5251 624795490 624795542 1.360000e-06 65.8
33 TraesCS7D01G181500 chr1B 91.489 47 4 0 5219 5265 161992283 161992237 1.360000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G181500 chr7D 135360899 135366744 5845 True 3701.333333 10796 95.0620 1 5846 3 chr7D.!!$R1 5845
1 TraesCS7D01G181500 chr7A 134509581 134518221 8640 True 1189.066667 2730 92.0735 590 5846 6 chr7A.!!$R1 5256
2 TraesCS7D01G181500 chr7A 651086346 651086960 614 False 558.000000 558 83.2320 1081 1729 1 chr7A.!!$F1 648
3 TraesCS7D01G181500 chr7B 97197286 97204401 7115 True 789.040000 2353 91.7574 175 5846 10 chr7B.!!$R1 5671
4 TraesCS7D01G181500 chr4A 440711650 440712264 614 True 531.000000 531 82.4700 1081 1729 1 chr4A.!!$R1 648
5 TraesCS7D01G181500 chr6A 12896069 12896675 606 True 527.000000 527 82.5620 1089 1729 1 chr6A.!!$R1 640

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
404 414 0.035439 TTCTTGCGGGGCTTCCTAAG 60.035 55.0 0.00 0.00 0.00 2.18 F
1794 2197 0.035820 TGGATGGTTTCACCTACCGC 60.036 55.0 0.00 0.00 39.58 5.68 F
1801 2204 0.319211 TTTCACCTACCGCGTGAGTG 60.319 55.0 4.92 7.41 41.10 3.51 F
2327 2741 0.655733 CCGGCCACATCGTTGATAAC 59.344 55.0 2.24 0.00 0.00 1.89 F
3020 3435 0.709992 AGTGGCATAAACATGGGGGT 59.290 50.0 0.00 0.00 0.00 4.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1818 2221 0.171455 CACTAGCGTGAGGTCCTGAC 59.829 60.000 0.0 0.0 43.97 3.51 R
3297 3975 0.535102 AGCTTCCCTTGTGTTCACGG 60.535 55.000 0.0 0.0 33.45 4.94 R
3567 4247 5.176223 GTGTCTAAGGACGAAATCAAACGAA 59.824 40.000 0.0 0.0 44.83 3.85 R
3935 4653 1.067974 TGACGATATACAACAGGGCGG 59.932 52.381 0.0 0.0 0.00 6.13 R
4997 5758 0.603975 GCGCTCTTGTTTCACCTCCT 60.604 55.000 0.0 0.0 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 6.956299 TTTTTACTTATTCCGTTCCTCTCG 57.044 37.500 0.00 0.00 0.00 4.04
43 44 2.580966 ACTTATTCCGTTCCTCTCGC 57.419 50.000 0.00 0.00 0.00 5.03
44 45 1.202268 ACTTATTCCGTTCCTCTCGCG 60.202 52.381 0.00 0.00 0.00 5.87
45 46 0.101759 TTATTCCGTTCCTCTCGCGG 59.898 55.000 6.13 0.00 46.12 6.46
49 50 4.496670 CGTTCCTCTCGCGGAAAT 57.503 55.556 6.13 0.00 44.19 2.17
50 51 3.635433 CGTTCCTCTCGCGGAAATA 57.365 52.632 6.13 0.00 44.19 1.40
51 52 1.917273 CGTTCCTCTCGCGGAAATAA 58.083 50.000 6.13 0.00 44.19 1.40
52 53 2.264813 CGTTCCTCTCGCGGAAATAAA 58.735 47.619 6.13 0.00 44.19 1.40
53 54 2.281762 CGTTCCTCTCGCGGAAATAAAG 59.718 50.000 6.13 0.00 44.19 1.85
54 55 1.935933 TCCTCTCGCGGAAATAAAGC 58.064 50.000 6.13 0.00 0.00 3.51
55 56 0.938008 CCTCTCGCGGAAATAAAGCC 59.062 55.000 6.13 0.00 0.00 4.35
61 62 2.477880 CGGAAATAAAGCCGTGCCT 58.522 52.632 0.00 0.00 42.49 4.75
62 63 1.658994 CGGAAATAAAGCCGTGCCTA 58.341 50.000 0.00 0.00 42.49 3.93
63 64 1.329599 CGGAAATAAAGCCGTGCCTAC 59.670 52.381 0.00 0.00 42.49 3.18
64 65 2.361789 GGAAATAAAGCCGTGCCTACA 58.638 47.619 0.00 0.00 0.00 2.74
65 66 2.096980 GGAAATAAAGCCGTGCCTACAC 59.903 50.000 0.00 0.00 43.76 2.90
78 79 5.813080 GTGCCTACACGGAAATTAAATCT 57.187 39.130 0.00 0.00 36.98 2.40
79 80 6.913873 GTGCCTACACGGAAATTAAATCTA 57.086 37.500 0.00 0.00 36.98 1.98
80 81 7.492352 GTGCCTACACGGAAATTAAATCTAT 57.508 36.000 0.00 0.00 36.98 1.98
81 82 7.352739 GTGCCTACACGGAAATTAAATCTATG 58.647 38.462 0.00 0.00 36.98 2.23
82 83 6.017440 TGCCTACACGGAAATTAAATCTATGC 60.017 38.462 0.00 0.00 33.16 3.14
83 84 6.567891 GCCTACACGGAAATTAAATCTATGCC 60.568 42.308 0.00 0.00 33.16 4.40
84 85 6.710744 CCTACACGGAAATTAAATCTATGCCT 59.289 38.462 0.00 0.00 33.16 4.75
85 86 6.619801 ACACGGAAATTAAATCTATGCCTC 57.380 37.500 0.00 0.00 0.00 4.70
86 87 6.357367 ACACGGAAATTAAATCTATGCCTCT 58.643 36.000 0.00 0.00 0.00 3.69
87 88 6.483640 ACACGGAAATTAAATCTATGCCTCTC 59.516 38.462 0.00 0.00 0.00 3.20
88 89 6.483307 CACGGAAATTAAATCTATGCCTCTCA 59.517 38.462 0.00 0.00 0.00 3.27
89 90 6.483640 ACGGAAATTAAATCTATGCCTCTCAC 59.516 38.462 0.00 0.00 0.00 3.51
90 91 6.483307 CGGAAATTAAATCTATGCCTCTCACA 59.517 38.462 0.00 0.00 0.00 3.58
91 92 7.307632 CGGAAATTAAATCTATGCCTCTCACAG 60.308 40.741 0.00 0.00 0.00 3.66
92 93 7.716998 GGAAATTAAATCTATGCCTCTCACAGA 59.283 37.037 0.00 0.00 31.97 3.41
93 94 9.113838 GAAATTAAATCTATGCCTCTCACAGAA 57.886 33.333 0.00 0.00 31.06 3.02
94 95 9.638176 AAATTAAATCTATGCCTCTCACAGAAT 57.362 29.630 0.00 0.00 31.06 2.40
99 100 9.466497 AAATCTATGCCTCTCACAGAATAAAAA 57.534 29.630 0.00 0.00 31.06 1.94
148 149 2.551270 CACAACCGTGCTTCTCGC 59.449 61.111 0.00 0.00 36.06 5.03
154 155 2.470286 CGTGCTTCTCGCGGAAAC 59.530 61.111 6.13 5.03 44.36 2.78
155 156 2.307309 CGTGCTTCTCGCGGAAACA 61.307 57.895 6.13 7.78 44.36 2.83
156 157 1.827315 CGTGCTTCTCGCGGAAACAA 61.827 55.000 6.13 0.00 44.36 2.83
157 158 0.306533 GTGCTTCTCGCGGAAACAAA 59.693 50.000 6.13 0.00 43.27 2.83
158 159 1.069227 GTGCTTCTCGCGGAAACAAAT 60.069 47.619 6.13 0.00 43.27 2.32
159 160 1.606668 TGCTTCTCGCGGAAACAAATT 59.393 42.857 6.13 0.00 43.27 1.82
160 161 2.034053 TGCTTCTCGCGGAAACAAATTT 59.966 40.909 6.13 0.00 43.27 1.82
161 162 3.251245 TGCTTCTCGCGGAAACAAATTTA 59.749 39.130 6.13 0.00 43.27 1.40
162 163 4.083003 TGCTTCTCGCGGAAACAAATTTAT 60.083 37.500 6.13 0.00 43.27 1.40
163 164 4.262976 GCTTCTCGCGGAAACAAATTTATG 59.737 41.667 6.13 0.00 33.07 1.90
164 165 3.753842 TCTCGCGGAAACAAATTTATGC 58.246 40.909 6.13 0.00 0.00 3.14
165 166 2.851824 CTCGCGGAAACAAATTTATGCC 59.148 45.455 6.13 0.00 0.00 4.40
166 167 2.490115 TCGCGGAAACAAATTTATGCCT 59.510 40.909 6.13 0.00 0.00 4.75
167 168 2.851824 CGCGGAAACAAATTTATGCCTC 59.148 45.455 0.00 0.00 0.00 4.70
168 169 3.186909 GCGGAAACAAATTTATGCCTCC 58.813 45.455 0.00 0.00 0.00 4.30
169 170 3.367910 GCGGAAACAAATTTATGCCTCCA 60.368 43.478 0.00 0.00 0.00 3.86
170 171 4.680440 GCGGAAACAAATTTATGCCTCCAT 60.680 41.667 0.00 0.00 35.44 3.41
171 172 4.805192 CGGAAACAAATTTATGCCTCCATG 59.195 41.667 0.00 0.00 32.85 3.66
172 173 5.394005 CGGAAACAAATTTATGCCTCCATGA 60.394 40.000 0.00 0.00 32.85 3.07
173 174 6.405538 GGAAACAAATTTATGCCTCCATGAA 58.594 36.000 0.00 0.00 32.39 2.57
177 178 7.008021 ACAAATTTATGCCTCCATGAAAAGT 57.992 32.000 0.00 0.00 31.73 2.66
183 184 8.593945 TTTATGCCTCCATGAAAAGTAAATCT 57.406 30.769 0.00 0.00 32.85 2.40
184 185 5.902613 TGCCTCCATGAAAAGTAAATCTG 57.097 39.130 0.00 0.00 0.00 2.90
187 188 5.183904 GCCTCCATGAAAAGTAAATCTGTGT 59.816 40.000 0.00 0.00 0.00 3.72
193 194 7.412346 CCATGAAAAGTAAATCTGTGTCTCTCG 60.412 40.741 0.00 0.00 0.00 4.04
194 195 6.513180 TGAAAAGTAAATCTGTGTCTCTCGT 58.487 36.000 0.00 0.00 0.00 4.18
196 197 5.707242 AAGTAAATCTGTGTCTCTCGTGA 57.293 39.130 0.00 0.00 0.00 4.35
200 201 3.584406 ATCTGTGTCTCTCGTGAAAGG 57.416 47.619 0.00 0.00 0.00 3.11
205 206 4.509616 TGTGTCTCTCGTGAAAGGAAAAA 58.490 39.130 0.00 0.00 0.00 1.94
206 207 4.570772 TGTGTCTCTCGTGAAAGGAAAAAG 59.429 41.667 0.00 0.00 0.00 2.27
208 209 5.293569 GTGTCTCTCGTGAAAGGAAAAAGAA 59.706 40.000 0.00 0.00 0.00 2.52
209 210 5.293569 TGTCTCTCGTGAAAGGAAAAAGAAC 59.706 40.000 0.00 0.00 0.00 3.01
210 211 5.293569 GTCTCTCGTGAAAGGAAAAAGAACA 59.706 40.000 0.00 0.00 0.00 3.18
211 212 6.017852 GTCTCTCGTGAAAGGAAAAAGAACAT 60.018 38.462 0.00 0.00 0.00 2.71
212 213 7.170998 GTCTCTCGTGAAAGGAAAAAGAACATA 59.829 37.037 0.00 0.00 0.00 2.29
218 219 9.848172 CGTGAAAGGAAAAAGAACATATTTTTG 57.152 29.630 0.68 0.00 39.34 2.44
249 250 0.951558 GAGCAAAGACCGAAAAGCCA 59.048 50.000 0.00 0.00 0.00 4.75
254 264 3.559655 GCAAAGACCGAAAAGCCAAAAAT 59.440 39.130 0.00 0.00 0.00 1.82
257 267 6.563939 GCAAAGACCGAAAAGCCAAAAATAAG 60.564 38.462 0.00 0.00 0.00 1.73
262 272 6.156519 ACCGAAAAGCCAAAAATAAGTCATC 58.843 36.000 0.00 0.00 0.00 2.92
278 288 6.575162 AAGTCATCTAAAAGCCGAAAACAT 57.425 33.333 0.00 0.00 0.00 2.71
279 289 5.942872 AGTCATCTAAAAGCCGAAAACATG 58.057 37.500 0.00 0.00 0.00 3.21
282 292 6.741358 GTCATCTAAAAGCCGAAAACATGTAC 59.259 38.462 0.00 0.00 0.00 2.90
290 300 6.084326 AGCCGAAAACATGTACAGAAAAAT 57.916 33.333 0.00 0.00 0.00 1.82
292 302 7.653647 AGCCGAAAACATGTACAGAAAAATAA 58.346 30.769 0.00 0.00 0.00 1.40
293 303 8.138712 AGCCGAAAACATGTACAGAAAAATAAA 58.861 29.630 0.00 0.00 0.00 1.40
294 304 8.756864 GCCGAAAACATGTACAGAAAAATAAAA 58.243 29.630 0.00 0.00 0.00 1.52
324 334 0.537371 CGGAGGAAGCACCCAAAACT 60.537 55.000 0.00 0.00 40.05 2.66
325 335 1.248486 GGAGGAAGCACCCAAAACTC 58.752 55.000 0.00 0.00 40.05 3.01
334 344 0.176219 ACCCAAAACTCGACACGTGA 59.824 50.000 25.01 0.00 0.00 4.35
336 346 0.228742 CCAAAACTCGACACGTGACG 59.771 55.000 29.72 29.72 34.74 4.35
360 370 0.390866 CTGAGAGCGCACCAAGTGAT 60.391 55.000 11.47 0.00 35.23 3.06
363 373 2.281692 AGCGCACCAAGTGATGCA 60.282 55.556 11.47 0.00 42.17 3.96
367 377 1.878775 GCACCAAGTGATGCACTCC 59.121 57.895 0.00 0.00 44.62 3.85
368 378 1.589716 GCACCAAGTGATGCACTCCC 61.590 60.000 0.00 0.00 44.62 4.30
371 381 1.076024 ACCAAGTGATGCACTCCCAAT 59.924 47.619 0.00 0.00 44.62 3.16
381 391 1.993956 CACTCCCAATCCACACCAAA 58.006 50.000 0.00 0.00 0.00 3.28
385 395 3.245730 ACTCCCAATCCACACCAAATGAT 60.246 43.478 0.00 0.00 0.00 2.45
386 396 3.770933 CTCCCAATCCACACCAAATGATT 59.229 43.478 0.00 0.00 0.00 2.57
401 411 1.077429 GATTCTTGCGGGGCTTCCT 60.077 57.895 0.00 0.00 0.00 3.36
404 414 0.035439 TTCTTGCGGGGCTTCCTAAG 60.035 55.000 0.00 0.00 0.00 2.18
405 415 1.452108 CTTGCGGGGCTTCCTAAGG 60.452 63.158 0.00 0.00 0.00 2.69
408 418 2.506472 CGGGGCTTCCTAAGGAGC 59.494 66.667 0.00 0.00 31.21 4.70
412 422 1.497161 GGGCTTCCTAAGGAGCACTA 58.503 55.000 8.43 0.00 31.21 2.74
413 423 1.414550 GGGCTTCCTAAGGAGCACTAG 59.585 57.143 8.43 0.00 31.21 2.57
414 424 1.414550 GGCTTCCTAAGGAGCACTAGG 59.585 57.143 8.43 1.04 31.21 3.02
436 454 2.094390 TGCTCTCGCCGTAAGTTGTAAT 60.094 45.455 0.00 0.00 34.43 1.89
437 455 3.129113 TGCTCTCGCCGTAAGTTGTAATA 59.871 43.478 0.00 0.00 34.43 0.98
438 456 4.107622 GCTCTCGCCGTAAGTTGTAATAA 58.892 43.478 0.00 0.00 0.00 1.40
439 457 4.563976 GCTCTCGCCGTAAGTTGTAATAAA 59.436 41.667 0.00 0.00 0.00 1.40
440 458 5.062558 GCTCTCGCCGTAAGTTGTAATAAAA 59.937 40.000 0.00 0.00 0.00 1.52
473 492 3.224324 GCCGTATGGAGCTCCGGA 61.224 66.667 26.91 16.30 43.01 5.14
480 505 1.627297 ATGGAGCTCCGGAAAGGGTC 61.627 60.000 27.43 9.32 41.52 4.46
568 613 1.301293 CCTTCTGGAGTTCTGGGCC 59.699 63.158 0.00 0.00 34.57 5.80
570 615 1.831652 CTTCTGGAGTTCTGGGCCGT 61.832 60.000 0.00 0.00 0.00 5.68
734 781 0.456995 GAGAGAGCAAACGAGACGGG 60.457 60.000 0.00 0.00 0.00 5.28
760 807 2.878429 CCTCACGTGTCCTCCTCG 59.122 66.667 16.51 0.00 0.00 4.63
824 876 4.106925 CCTGCCTGCCTCACTCCC 62.107 72.222 0.00 0.00 0.00 4.30
871 923 3.760035 GCCTCGACCTCCGCAGAA 61.760 66.667 0.00 0.00 38.37 3.02
946 1004 2.729479 CCATGCTGACCTCCTCGCT 61.729 63.158 0.00 0.00 0.00 4.93
1121 1179 4.394712 CCACCTCCCCGTGAGCAC 62.395 72.222 0.00 0.00 39.98 4.40
1140 1204 1.694525 CCCCCTCCCTTTCCCTCTC 60.695 68.421 0.00 0.00 0.00 3.20
1189 1583 1.402852 CGAGTGCTCGTCTCCATTTCA 60.403 52.381 12.87 0.00 46.99 2.69
1198 1592 0.901827 TCTCCATTTCAGCGCCTGTA 59.098 50.000 2.29 0.00 32.61 2.74
1392 1793 1.816224 TCTGAATGTTTTAAGGCGGCC 59.184 47.619 12.11 12.11 0.00 6.13
1537 1939 3.620488 TGAATTGGTGCCTATTCCAGTC 58.380 45.455 17.97 0.47 37.37 3.51
1550 1952 3.391506 TTCCAGTCTCTCATGTGTGTG 57.608 47.619 0.00 0.00 0.00 3.82
1666 2069 2.309755 TCCCCTTTCTGTTGAGATGCAT 59.690 45.455 0.00 0.00 0.00 3.96
1792 2195 2.572104 AGAGTGGATGGTTTCACCTACC 59.428 50.000 0.00 0.00 39.58 3.18
1793 2196 1.278127 AGTGGATGGTTTCACCTACCG 59.722 52.381 0.00 0.00 39.58 4.02
1794 2197 0.035820 TGGATGGTTTCACCTACCGC 60.036 55.000 0.00 0.00 39.58 5.68
1795 2198 1.087771 GGATGGTTTCACCTACCGCG 61.088 60.000 0.00 0.00 39.58 6.46
1796 2199 0.390735 GATGGTTTCACCTACCGCGT 60.391 55.000 4.92 0.00 39.58 6.01
1797 2200 0.672401 ATGGTTTCACCTACCGCGTG 60.672 55.000 4.92 0.00 39.58 5.34
1798 2201 1.005867 GGTTTCACCTACCGCGTGA 60.006 57.895 4.92 0.00 38.46 4.35
1799 2202 1.012486 GGTTTCACCTACCGCGTGAG 61.012 60.000 4.92 0.73 41.10 3.51
1800 2203 0.319297 GTTTCACCTACCGCGTGAGT 60.319 55.000 4.92 0.00 41.10 3.41
1801 2204 0.319211 TTTCACCTACCGCGTGAGTG 60.319 55.000 4.92 7.41 41.10 3.51
1802 2205 2.758770 TTCACCTACCGCGTGAGTGC 62.759 60.000 4.92 0.00 41.10 4.40
1803 2206 4.065281 ACCTACCGCGTGAGTGCC 62.065 66.667 4.92 0.00 41.13 5.01
1804 2207 3.760035 CCTACCGCGTGAGTGCCT 61.760 66.667 4.92 0.00 41.13 4.75
1805 2208 2.507102 CTACCGCGTGAGTGCCTG 60.507 66.667 4.92 0.00 41.13 4.85
1806 2209 3.989698 CTACCGCGTGAGTGCCTGG 62.990 68.421 4.92 0.00 41.13 4.45
1811 2214 3.625897 CGTGAGTGCCTGGGTGGA 61.626 66.667 0.00 0.00 38.35 4.02
1812 2215 2.348998 GTGAGTGCCTGGGTGGAG 59.651 66.667 0.00 0.00 38.35 3.86
1813 2216 2.204034 TGAGTGCCTGGGTGGAGA 59.796 61.111 0.00 0.00 38.35 3.71
1814 2217 2.217038 TGAGTGCCTGGGTGGAGAC 61.217 63.158 0.00 0.00 38.35 3.36
1815 2218 2.930562 AGTGCCTGGGTGGAGACC 60.931 66.667 0.00 0.00 42.27 3.85
1856 2259 4.785301 AGTGCACATTCACTAGCCATAAT 58.215 39.130 21.04 0.00 44.77 1.28
1888 2292 7.511268 AGTTCCTGTTTGTATGGTAGTTTGTA 58.489 34.615 0.00 0.00 0.00 2.41
1917 2321 5.757850 AAGAAACTGAACCTGACATTCAC 57.242 39.130 0.00 0.00 32.67 3.18
2166 2580 4.373156 TCGATGGAGATCATACCTGAGA 57.627 45.455 0.00 0.00 35.97 3.27
2327 2741 0.655733 CCGGCCACATCGTTGATAAC 59.344 55.000 2.24 0.00 0.00 1.89
2411 2825 4.095410 TGCTTCAAATCATAAGTTGCCG 57.905 40.909 0.00 0.00 30.66 5.69
2872 3287 2.380084 TTGAGGACGTGCTAATGACC 57.620 50.000 10.47 0.00 0.00 4.02
3020 3435 0.709992 AGTGGCATAAACATGGGGGT 59.290 50.000 0.00 0.00 0.00 4.95
3086 3763 8.693542 ATCAGTCATTATTTGCTGTTAAAAGC 57.306 30.769 10.95 10.95 43.82 3.51
3119 3796 1.707989 TGTTTGGCCCTCTCCAACATA 59.292 47.619 0.00 0.00 45.08 2.29
3297 3975 4.439305 TGGAAACTAAACATCATGCAGC 57.561 40.909 0.00 0.00 0.00 5.25
3454 4132 5.596845 GGCTAGTTCCAATTTGTTTGTGAA 58.403 37.500 0.00 0.00 33.15 3.18
3567 4247 7.671495 AAGCAAACAATTCAACTCTTTTGTT 57.329 28.000 0.00 0.00 42.40 2.83
3800 4518 0.817013 GGCCGATCATGCAAAGGAAA 59.183 50.000 6.56 0.00 0.00 3.13
3935 4653 1.200020 GTGTTCACCAATGTAGCTGGC 59.800 52.381 0.00 0.00 37.48 4.85
3979 4697 9.457436 TCAAACAGGTACTTCTCTTTTACTTTT 57.543 29.630 0.00 0.00 34.60 2.27
4046 4764 9.020731 CATTAGTTTCCACCTTTATAACAACCT 57.979 33.333 0.00 0.00 0.00 3.50
4047 4765 6.894339 AGTTTCCACCTTTATAACAACCTG 57.106 37.500 0.00 0.00 0.00 4.00
4080 4798 3.452627 AGCACTAATAAGGTGACTCCCTG 59.547 47.826 0.00 0.00 42.68 4.45
4327 5053 8.019094 GGTGCTAATAACTATTTCACGTTTTGT 58.981 33.333 0.00 0.00 33.08 2.83
4333 5059 3.570975 ACTATTTCACGTTTTGTTCCCCC 59.429 43.478 0.00 0.00 0.00 5.40
4411 5137 6.778559 ACCTGTAATCTACTAATCTCTGACCC 59.221 42.308 0.00 0.00 0.00 4.46
4422 5148 2.619931 TCTCTGACCCATCTTTCCACA 58.380 47.619 0.00 0.00 0.00 4.17
4518 5251 2.435372 ACACCCTTCTTTGCAAGTGA 57.565 45.000 17.97 9.99 0.00 3.41
4557 5290 3.499537 TGTTGATCAAGTGAGTCACATGC 59.500 43.478 24.73 11.72 36.74 4.06
4602 5335 3.152341 CAGCCTGAATGGTTCAAGTTCT 58.848 45.455 0.00 0.00 39.58 3.01
4700 5433 6.933514 TCAGATTACTATGCATATGGGTCA 57.066 37.500 6.92 0.00 0.00 4.02
4846 5579 5.885449 ACCTGGAATTTGGAATTTGTGAA 57.115 34.783 0.00 0.00 0.00 3.18
4883 5616 2.417719 GAACCGTTGAGACTTGATGCT 58.582 47.619 0.00 0.00 0.00 3.79
4891 5624 3.930336 TGAGACTTGATGCTAGGTGTTG 58.070 45.455 0.00 0.00 0.00 3.33
4913 5646 5.616270 TGTTCTGATGGCTTGTACAGTTTA 58.384 37.500 0.00 0.00 0.00 2.01
4990 5724 4.986659 TGTAGGAAAACTAGTTCGCTTGTC 59.013 41.667 8.95 0.45 32.25 3.18
5021 5782 1.065551 GGTGAAACAAGAGCGCAACTT 59.934 47.619 11.47 12.27 39.98 2.66
5022 5783 2.111756 GTGAAACAAGAGCGCAACTTG 58.888 47.619 30.95 30.95 46.69 3.16
5024 5785 1.333619 GAAACAAGAGCGCAACTTGGA 59.666 47.619 33.40 0.00 45.92 3.53
5026 5787 0.663153 ACAAGAGCGCAACTTGGAAC 59.337 50.000 33.40 8.96 45.92 3.62
5027 5788 0.947244 CAAGAGCGCAACTTGGAACT 59.053 50.000 27.66 0.00 40.39 3.01
5029 5790 0.947244 AGAGCGCAACTTGGAACTTG 59.053 50.000 11.47 0.00 0.00 3.16
5030 5791 0.944386 GAGCGCAACTTGGAACTTGA 59.056 50.000 11.47 0.00 0.00 3.02
5031 5792 0.663153 AGCGCAACTTGGAACTTGAC 59.337 50.000 11.47 0.00 0.00 3.18
5137 5900 5.277974 CCATGTTCCGCTTATCTTACCAATG 60.278 44.000 0.00 0.00 0.00 2.82
5140 5903 6.822442 TGTTCCGCTTATCTTACCAATGATA 58.178 36.000 0.00 0.00 0.00 2.15
5143 5906 6.220930 TCCGCTTATCTTACCAATGATACAC 58.779 40.000 0.00 0.00 0.00 2.90
5145 5908 6.366332 CCGCTTATCTTACCAATGATACACTC 59.634 42.308 0.00 0.00 0.00 3.51
5149 5912 9.186323 CTTATCTTACCAATGATACACTCGAAG 57.814 37.037 0.00 0.00 0.00 3.79
5153 5916 2.196749 CAATGATACACTCGAAGCGCT 58.803 47.619 2.64 2.64 0.00 5.92
5168 5936 4.734370 CGAAGCGCTGATATCATATGAGAG 59.266 45.833 12.58 5.66 0.00 3.20
5204 5972 7.283127 GGTGCAATCCTTCTGAGAACAATAATA 59.717 37.037 0.00 0.00 0.00 0.98
5236 6004 8.890410 ACTTATAGTACTCCCTCTGTAAACAA 57.110 34.615 0.00 0.00 0.00 2.83
5237 6005 9.317827 ACTTATAGTACTCCCTCTGTAAACAAA 57.682 33.333 0.00 0.00 0.00 2.83
5245 6013 7.690256 ACTCCCTCTGTAAACAAATGTAAGAT 58.310 34.615 0.00 0.00 0.00 2.40
5253 6021 9.848172 CTGTAAACAAATGTAAGATGTTTTTGC 57.152 29.630 8.22 2.06 42.82 3.68
5254 6022 9.371136 TGTAAACAAATGTAAGATGTTTTTGCA 57.629 25.926 8.22 0.00 42.82 4.08
5255 6023 9.848172 GTAAACAAATGTAAGATGTTTTTGCAG 57.152 29.630 8.22 0.00 42.82 4.41
5259 6104 9.593134 ACAAATGTAAGATGTTTTTGCAGTTTA 57.407 25.926 0.00 0.00 28.63 2.01
5270 6115 7.680062 TGTTTTTGCAGTTTAAGTTATGTTGC 58.320 30.769 0.00 6.23 0.00 4.17
5291 6136 0.947244 CTGAACACTTCCACCTGTGC 59.053 55.000 0.00 0.00 37.68 4.57
5292 6137 0.546122 TGAACACTTCCACCTGTGCT 59.454 50.000 0.00 0.00 37.68 4.40
5293 6138 1.064758 TGAACACTTCCACCTGTGCTT 60.065 47.619 0.00 0.00 37.68 3.91
5294 6139 1.334869 GAACACTTCCACCTGTGCTTG 59.665 52.381 0.00 0.00 37.68 4.01
5295 6140 0.466189 ACACTTCCACCTGTGCTTGG 60.466 55.000 0.00 0.00 37.68 3.61
5297 6142 1.604593 CTTCCACCTGTGCTTGGGG 60.605 63.158 0.00 0.00 33.25 4.96
5298 6143 2.067932 CTTCCACCTGTGCTTGGGGA 62.068 60.000 0.00 0.00 33.25 4.81
5299 6144 1.650242 TTCCACCTGTGCTTGGGGAA 61.650 55.000 0.00 0.00 34.13 3.97
5300 6145 1.152567 CCACCTGTGCTTGGGGAAA 60.153 57.895 0.00 0.00 0.00 3.13
5301 6146 0.758685 CCACCTGTGCTTGGGGAAAA 60.759 55.000 0.00 0.00 0.00 2.29
5302 6147 0.675633 CACCTGTGCTTGGGGAAAAG 59.324 55.000 0.00 0.00 0.00 2.27
5303 6148 0.555769 ACCTGTGCTTGGGGAAAAGA 59.444 50.000 0.00 0.00 0.00 2.52
5304 6149 1.063266 ACCTGTGCTTGGGGAAAAGAA 60.063 47.619 0.00 0.00 0.00 2.52
5305 6150 1.341209 CCTGTGCTTGGGGAAAAGAAC 59.659 52.381 0.00 0.00 36.39 3.01
5306 6151 2.310538 CTGTGCTTGGGGAAAAGAACT 58.689 47.619 0.00 0.00 36.74 3.01
5307 6152 2.695147 CTGTGCTTGGGGAAAAGAACTT 59.305 45.455 0.00 0.00 36.74 2.66
5308 6153 2.693074 TGTGCTTGGGGAAAAGAACTTC 59.307 45.455 0.00 0.00 36.74 3.01
5309 6154 2.035961 GTGCTTGGGGAAAAGAACTTCC 59.964 50.000 0.00 0.00 43.69 3.46
5310 6155 2.316108 GCTTGGGGAAAAGAACTTCCA 58.684 47.619 4.84 0.00 45.86 3.53
5312 6157 2.375014 TGGGGAAAAGAACTTCCACC 57.625 50.000 2.27 3.29 46.80 4.61
5313 6158 1.856920 TGGGGAAAAGAACTTCCACCT 59.143 47.619 2.27 0.00 46.80 4.00
5314 6159 2.239400 GGGGAAAAGAACTTCCACCTG 58.761 52.381 4.84 0.00 45.86 4.00
5315 6160 2.424379 GGGGAAAAGAACTTCCACCTGT 60.424 50.000 4.84 0.00 45.86 4.00
5316 6161 2.623416 GGGAAAAGAACTTCCACCTGTG 59.377 50.000 4.84 0.00 45.86 3.66
5317 6162 2.034685 GGAAAAGAACTTCCACCTGTGC 59.965 50.000 0.00 0.00 43.84 4.57
5318 6163 2.736670 AAAGAACTTCCACCTGTGCT 57.263 45.000 0.00 0.00 0.00 4.40
5319 6164 2.736670 AAGAACTTCCACCTGTGCTT 57.263 45.000 0.00 0.00 0.00 3.91
5320 6165 1.972872 AGAACTTCCACCTGTGCTTG 58.027 50.000 0.00 0.00 0.00 4.01
5321 6166 0.954452 GAACTTCCACCTGTGCTTGG 59.046 55.000 0.00 0.00 0.00 3.61
5322 6167 0.468029 AACTTCCACCTGTGCTTGGG 60.468 55.000 0.00 0.00 33.25 4.12
5323 6168 1.352622 ACTTCCACCTGTGCTTGGGA 61.353 55.000 0.00 0.00 33.25 4.37
5327 6172 1.118838 CCACCTGTGCTTGGGAAAAA 58.881 50.000 0.00 0.00 0.00 1.94
5329 6174 1.069049 CACCTGTGCTTGGGAAAAAGG 59.931 52.381 0.00 0.00 0.00 3.11
5337 6182 2.490902 GCTTGGGAAAAAGGAGGAGGAA 60.491 50.000 0.00 0.00 0.00 3.36
5366 6211 8.037758 AGATGACATCTAGAAAATCGACACTTT 58.962 33.333 16.51 0.00 38.00 2.66
5367 6212 7.351414 TGACATCTAGAAAATCGACACTTTG 57.649 36.000 0.00 0.00 0.00 2.77
5369 6214 7.441157 TGACATCTAGAAAATCGACACTTTGTT 59.559 33.333 0.00 0.00 0.00 2.83
5372 6217 6.427150 TCTAGAAAATCGACACTTTGTTTGC 58.573 36.000 0.00 0.00 0.00 3.68
5373 6218 5.248870 AGAAAATCGACACTTTGTTTGCT 57.751 34.783 0.00 0.00 0.00 3.91
5374 6219 5.650543 AGAAAATCGACACTTTGTTTGCTT 58.349 33.333 0.00 0.00 0.00 3.91
5375 6220 5.516339 AGAAAATCGACACTTTGTTTGCTTG 59.484 36.000 0.00 0.00 0.00 4.01
5376 6221 4.630894 AATCGACACTTTGTTTGCTTGA 57.369 36.364 0.00 0.00 0.00 3.02
5377 6222 4.836125 ATCGACACTTTGTTTGCTTGAT 57.164 36.364 0.00 0.00 0.00 2.57
5378 6223 3.951306 TCGACACTTTGTTTGCTTGATG 58.049 40.909 0.00 0.00 0.00 3.07
5379 6224 3.376859 TCGACACTTTGTTTGCTTGATGT 59.623 39.130 0.00 0.00 0.00 3.06
5380 6225 3.483196 CGACACTTTGTTTGCTTGATGTG 59.517 43.478 0.00 0.00 0.00 3.21
5388 6233 1.236616 TTGCTTGATGTGGCCTCACG 61.237 55.000 10.23 0.82 46.42 4.35
5392 6237 2.184020 TTGATGTGGCCTCACGGGAG 62.184 60.000 10.23 8.02 46.42 4.30
5402 6247 2.038975 CACGGGAGGGAAGGAGGA 59.961 66.667 0.00 0.00 32.31 3.71
5406 6251 1.331399 CGGGAGGGAAGGAGGAAGAC 61.331 65.000 0.00 0.00 0.00 3.01
5411 6256 0.974383 GGGAAGGAGGAAGACGACAA 59.026 55.000 0.00 0.00 0.00 3.18
5414 6259 1.268899 GAAGGAGGAAGACGACAACGA 59.731 52.381 0.00 0.00 42.66 3.85
5421 6266 2.725206 GGAAGACGACAACGAGAAACTC 59.275 50.000 0.00 0.00 42.66 3.01
5422 6267 3.369385 GAAGACGACAACGAGAAACTCA 58.631 45.455 0.00 0.00 42.66 3.41
5424 6269 3.978687 AGACGACAACGAGAAACTCAAT 58.021 40.909 0.00 0.00 42.66 2.57
5425 6270 3.736252 AGACGACAACGAGAAACTCAATG 59.264 43.478 0.00 0.00 42.66 2.82
5426 6271 3.454375 ACGACAACGAGAAACTCAATGT 58.546 40.909 0.00 0.00 42.66 2.71
5427 6272 3.245284 ACGACAACGAGAAACTCAATGTG 59.755 43.478 9.84 6.54 42.66 3.21
5429 6274 4.606232 CGACAACGAGAAACTCAATGTGTC 60.606 45.833 9.84 9.48 42.66 3.67
5430 6275 3.560068 ACAACGAGAAACTCAATGTGTCC 59.440 43.478 0.00 0.00 33.37 4.02
5431 6276 3.753294 ACGAGAAACTCAATGTGTCCT 57.247 42.857 0.00 0.00 33.37 3.85
5433 6278 3.069586 ACGAGAAACTCAATGTGTCCTCA 59.930 43.478 13.82 0.00 33.37 3.86
5434 6279 3.677121 CGAGAAACTCAATGTGTCCTCAG 59.323 47.826 13.82 6.80 33.37 3.35
5435 6280 3.999663 GAGAAACTCAATGTGTCCTCAGG 59.000 47.826 10.65 0.00 33.37 3.86
5436 6281 2.867109 AACTCAATGTGTCCTCAGGG 57.133 50.000 0.00 0.00 0.00 4.45
5437 6282 0.987294 ACTCAATGTGTCCTCAGGGG 59.013 55.000 0.00 0.00 0.00 4.79
5481 6493 0.672342 GCAAGCTGATATTGGCCCTG 59.328 55.000 0.00 0.00 0.00 4.45
5490 6502 4.155709 TGATATTGGCCCTGTTCAAAACA 58.844 39.130 0.00 0.00 39.52 2.83
5513 6525 2.371841 TGTCTAGCACCCATGTTCTGTT 59.628 45.455 0.00 0.00 0.00 3.16
5565 6614 7.773690 GGGAAGAATAGAGTTGCTTGGTAATTA 59.226 37.037 0.00 0.00 0.00 1.40
5566 6615 8.831550 GGAAGAATAGAGTTGCTTGGTAATTAG 58.168 37.037 0.00 0.00 0.00 1.73
5567 6616 8.738645 AAGAATAGAGTTGCTTGGTAATTAGG 57.261 34.615 0.00 0.00 0.00 2.69
5570 6619 9.343539 GAATAGAGTTGCTTGGTAATTAGGATT 57.656 33.333 0.00 0.00 0.00 3.01
5571 6620 9.700831 AATAGAGTTGCTTGGTAATTAGGATTT 57.299 29.630 0.00 0.00 0.00 2.17
5572 6621 9.700831 ATAGAGTTGCTTGGTAATTAGGATTTT 57.299 29.630 0.00 0.00 0.00 1.82
5573 6622 8.422577 AGAGTTGCTTGGTAATTAGGATTTTT 57.577 30.769 0.00 0.00 0.00 1.94
5574 6623 9.528489 AGAGTTGCTTGGTAATTAGGATTTTTA 57.472 29.630 0.00 0.00 0.00 1.52
5602 6651 8.893563 ATAACTTTGGGTGATTCAATTTAGGA 57.106 30.769 0.00 0.00 0.00 2.94
5603 6652 7.610580 AACTTTGGGTGATTCAATTTAGGAA 57.389 32.000 0.00 0.00 0.00 3.36
5604 6653 7.232118 ACTTTGGGTGATTCAATTTAGGAAG 57.768 36.000 0.00 0.00 0.00 3.46
5605 6654 6.782494 ACTTTGGGTGATTCAATTTAGGAAGT 59.218 34.615 0.00 0.00 0.00 3.01
5607 6656 6.834168 TGGGTGATTCAATTTAGGAAGTTC 57.166 37.500 0.00 0.00 0.00 3.01
5608 6657 5.714806 TGGGTGATTCAATTTAGGAAGTTCC 59.285 40.000 14.54 14.54 36.58 3.62
5610 6659 6.095580 GGGTGATTCAATTTAGGAAGTTCCTC 59.904 42.308 27.89 10.98 45.66 3.71
5612 6661 6.659242 GTGATTCAATTTAGGAAGTTCCTCCA 59.341 38.462 27.89 15.78 45.66 3.86
5613 6662 7.340487 GTGATTCAATTTAGGAAGTTCCTCCAT 59.660 37.037 27.89 17.30 45.66 3.41
5620 9320 2.922283 AGGAAGTTCCTCCATGAACCAT 59.078 45.455 19.27 0.00 45.66 3.55
5641 9341 6.856895 CCATTTGGTCAAAGGATTAGAGTTC 58.143 40.000 9.31 0.00 34.35 3.01
5643 9343 4.569719 TGGTCAAAGGATTAGAGTTCCC 57.430 45.455 0.00 0.00 33.45 3.97
5658 9359 4.778427 AGAGTTCCCGAATTCCTAAGAAGT 59.222 41.667 0.00 1.24 34.86 3.01
5667 9368 6.043411 CGAATTCCTAAGAAGTGTTCCCTAG 58.957 44.000 0.00 0.00 34.86 3.02
5675 9376 7.982354 CCTAAGAAGTGTTCCCTAGTTTCATAG 59.018 40.741 0.00 0.00 0.00 2.23
5676 9377 7.554959 AAGAAGTGTTCCCTAGTTTCATAGA 57.445 36.000 0.00 0.00 0.00 1.98
5679 9380 8.097662 AGAAGTGTTCCCTAGTTTCATAGAAAG 58.902 37.037 0.00 0.00 0.00 2.62
5681 9382 7.746703 AGTGTTCCCTAGTTTCATAGAAAGTT 58.253 34.615 5.28 0.00 0.00 2.66
5684 9385 8.215050 TGTTCCCTAGTTTCATAGAAAGTTCAA 58.785 33.333 5.28 0.00 0.00 2.69
5685 9386 9.232473 GTTCCCTAGTTTCATAGAAAGTTCAAT 57.768 33.333 5.28 0.00 0.00 2.57
5692 9393 9.965902 AGTTTCATAGAAAGTTCAATATGGTCT 57.034 29.630 0.00 0.00 0.00 3.85
5726 10093 4.370364 TTGTTTTTGAGAAGTCCAGTGC 57.630 40.909 0.00 0.00 0.00 4.40
5732 10099 7.446931 TGTTTTTGAGAAGTCCAGTGCAATATA 59.553 33.333 0.00 0.00 0.00 0.86
5736 10103 7.839680 TGAGAAGTCCAGTGCAATATATCTA 57.160 36.000 0.00 0.00 0.00 1.98
5738 10105 7.507277 TGAGAAGTCCAGTGCAATATATCTAGT 59.493 37.037 0.00 0.00 0.00 2.57
5798 10165 7.664082 TTTTCTCACAAAACATTCAAAAGCA 57.336 28.000 0.00 0.00 0.00 3.91
5799 10166 7.664082 TTTCTCACAAAACATTCAAAAGCAA 57.336 28.000 0.00 0.00 0.00 3.91
5800 10167 6.645700 TCTCACAAAACATTCAAAAGCAAC 57.354 33.333 0.00 0.00 0.00 4.17
5801 10168 6.162079 TCTCACAAAACATTCAAAAGCAACA 58.838 32.000 0.00 0.00 0.00 3.33
5802 10169 6.090628 TCTCACAAAACATTCAAAAGCAACAC 59.909 34.615 0.00 0.00 0.00 3.32
5803 10170 5.931146 TCACAAAACATTCAAAAGCAACACT 59.069 32.000 0.00 0.00 0.00 3.55
5804 10171 6.090628 TCACAAAACATTCAAAAGCAACACTC 59.909 34.615 0.00 0.00 0.00 3.51
5805 10172 5.062058 ACAAAACATTCAAAAGCAACACTCG 59.938 36.000 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 5.349543 GCGAGAGGAACGGAATAAGTAAAAA 59.650 40.000 0.00 0.00 0.00 1.94
20 21 4.866486 GCGAGAGGAACGGAATAAGTAAAA 59.134 41.667 0.00 0.00 0.00 1.52
21 22 4.427312 GCGAGAGGAACGGAATAAGTAAA 58.573 43.478 0.00 0.00 0.00 2.01
22 23 3.488047 CGCGAGAGGAACGGAATAAGTAA 60.488 47.826 0.00 0.00 0.00 2.24
23 24 2.032550 CGCGAGAGGAACGGAATAAGTA 59.967 50.000 0.00 0.00 0.00 2.24
24 25 1.202268 CGCGAGAGGAACGGAATAAGT 60.202 52.381 0.00 0.00 0.00 2.24
25 26 1.478137 CGCGAGAGGAACGGAATAAG 58.522 55.000 0.00 0.00 0.00 1.73
26 27 3.635433 CGCGAGAGGAACGGAATAA 57.365 52.632 0.00 0.00 0.00 1.40
35 36 1.472728 GGCTTTATTTCCGCGAGAGGA 60.473 52.381 8.23 0.00 38.79 3.71
36 37 0.938008 GGCTTTATTTCCGCGAGAGG 59.062 55.000 8.23 0.00 0.00 3.69
37 38 0.577269 CGGCTTTATTTCCGCGAGAG 59.423 55.000 8.23 0.00 39.14 3.20
38 39 2.673074 CGGCTTTATTTCCGCGAGA 58.327 52.632 8.23 0.00 39.14 4.04
44 45 2.096980 GTGTAGGCACGGCTTTATTTCC 59.903 50.000 0.00 0.00 35.75 3.13
45 46 3.400505 GTGTAGGCACGGCTTTATTTC 57.599 47.619 0.00 0.00 35.75 2.17
56 57 5.813080 AGATTTAATTTCCGTGTAGGCAC 57.187 39.130 0.00 0.00 41.97 5.01
57 58 6.017440 GCATAGATTTAATTTCCGTGTAGGCA 60.017 38.462 0.00 0.00 40.77 4.75
58 59 6.371389 GCATAGATTTAATTTCCGTGTAGGC 58.629 40.000 0.00 0.00 40.77 3.93
59 60 6.710744 AGGCATAGATTTAATTTCCGTGTAGG 59.289 38.462 0.00 0.00 42.97 3.18
60 61 7.657761 AGAGGCATAGATTTAATTTCCGTGTAG 59.342 37.037 0.00 0.00 0.00 2.74
61 62 7.506114 AGAGGCATAGATTTAATTTCCGTGTA 58.494 34.615 0.00 0.00 0.00 2.90
62 63 6.357367 AGAGGCATAGATTTAATTTCCGTGT 58.643 36.000 0.00 0.00 0.00 4.49
63 64 6.483307 TGAGAGGCATAGATTTAATTTCCGTG 59.517 38.462 0.00 0.00 0.00 4.94
64 65 6.483640 GTGAGAGGCATAGATTTAATTTCCGT 59.516 38.462 0.00 0.00 0.00 4.69
65 66 6.483307 TGTGAGAGGCATAGATTTAATTTCCG 59.517 38.462 0.00 0.00 0.00 4.30
66 67 7.716998 TCTGTGAGAGGCATAGATTTAATTTCC 59.283 37.037 0.00 0.00 39.48 3.13
67 68 8.668510 TCTGTGAGAGGCATAGATTTAATTTC 57.331 34.615 0.00 0.00 39.48 2.17
68 69 9.638176 ATTCTGTGAGAGGCATAGATTTAATTT 57.362 29.630 0.00 0.00 43.16 1.82
73 74 9.466497 TTTTTATTCTGTGAGAGGCATAGATTT 57.534 29.630 0.00 0.00 43.16 2.17
114 115 2.925724 TGTGCCTCTCGGAAAGAAAAA 58.074 42.857 0.00 0.00 32.23 1.94
115 116 2.616842 GTTGTGCCTCTCGGAAAGAAAA 59.383 45.455 0.00 0.00 32.23 2.29
116 117 2.218603 GTTGTGCCTCTCGGAAAGAAA 58.781 47.619 0.00 0.00 32.23 2.52
117 118 1.542547 GGTTGTGCCTCTCGGAAAGAA 60.543 52.381 0.00 0.00 32.23 2.52
118 119 0.034896 GGTTGTGCCTCTCGGAAAGA 59.965 55.000 0.00 0.00 0.00 2.52
119 120 1.291877 CGGTTGTGCCTCTCGGAAAG 61.292 60.000 0.00 0.00 34.25 2.62
120 121 1.301401 CGGTTGTGCCTCTCGGAAA 60.301 57.895 0.00 0.00 34.25 3.13
121 122 2.342279 CGGTTGTGCCTCTCGGAA 59.658 61.111 0.00 0.00 34.25 4.30
122 123 2.915659 ACGGTTGTGCCTCTCGGA 60.916 61.111 0.00 0.00 34.25 4.55
123 124 2.738521 CACGGTTGTGCCTCTCGG 60.739 66.667 0.00 0.00 39.67 4.63
137 138 1.827315 TTGTTTCCGCGAGAAGCACG 61.827 55.000 20.27 0.00 44.34 5.34
138 139 0.306533 TTTGTTTCCGCGAGAAGCAC 59.693 50.000 20.27 12.90 44.34 4.40
140 141 2.331809 AATTTGTTTCCGCGAGAAGC 57.668 45.000 8.23 12.26 43.95 3.86
141 142 4.262976 GCATAAATTTGTTTCCGCGAGAAG 59.737 41.667 8.23 0.00 35.40 2.85
142 143 4.162812 GCATAAATTTGTTTCCGCGAGAA 58.837 39.130 8.23 6.83 0.00 2.87
143 144 3.426963 GGCATAAATTTGTTTCCGCGAGA 60.427 43.478 8.23 0.00 0.00 4.04
144 145 2.851824 GGCATAAATTTGTTTCCGCGAG 59.148 45.455 8.23 0.00 0.00 5.03
145 146 2.490115 AGGCATAAATTTGTTTCCGCGA 59.510 40.909 8.23 0.00 0.00 5.87
146 147 2.851824 GAGGCATAAATTTGTTTCCGCG 59.148 45.455 0.00 0.00 0.00 6.46
147 148 3.186909 GGAGGCATAAATTTGTTTCCGC 58.813 45.455 0.00 0.08 0.00 5.54
148 149 4.448537 TGGAGGCATAAATTTGTTTCCG 57.551 40.909 0.00 0.00 0.00 4.30
149 150 5.976458 TCATGGAGGCATAAATTTGTTTCC 58.024 37.500 0.00 2.42 0.00 3.13
150 151 7.903995 TTTCATGGAGGCATAAATTTGTTTC 57.096 32.000 0.00 0.00 0.00 2.78
151 152 7.938490 ACTTTTCATGGAGGCATAAATTTGTTT 59.062 29.630 0.00 0.00 0.00 2.83
152 153 7.452562 ACTTTTCATGGAGGCATAAATTTGTT 58.547 30.769 0.00 0.00 0.00 2.83
153 154 7.008021 ACTTTTCATGGAGGCATAAATTTGT 57.992 32.000 0.00 0.00 0.00 2.83
154 155 9.434420 TTTACTTTTCATGGAGGCATAAATTTG 57.566 29.630 0.00 0.00 0.00 2.32
156 157 9.822185 GATTTACTTTTCATGGAGGCATAAATT 57.178 29.630 0.00 0.00 0.00 1.82
157 158 9.205513 AGATTTACTTTTCATGGAGGCATAAAT 57.794 29.630 0.00 0.00 0.00 1.40
158 159 8.469200 CAGATTTACTTTTCATGGAGGCATAAA 58.531 33.333 0.00 0.00 0.00 1.40
159 160 7.615365 ACAGATTTACTTTTCATGGAGGCATAA 59.385 33.333 0.00 0.00 0.00 1.90
160 161 7.067372 CACAGATTTACTTTTCATGGAGGCATA 59.933 37.037 0.00 0.00 0.00 3.14
161 162 5.954150 ACAGATTTACTTTTCATGGAGGCAT 59.046 36.000 0.00 0.00 0.00 4.40
162 163 5.183713 CACAGATTTACTTTTCATGGAGGCA 59.816 40.000 0.00 0.00 0.00 4.75
163 164 5.183904 ACACAGATTTACTTTTCATGGAGGC 59.816 40.000 0.00 0.00 0.00 4.70
164 165 6.656693 AGACACAGATTTACTTTTCATGGAGG 59.343 38.462 0.00 0.00 0.00 4.30
165 166 7.605691 AGAGACACAGATTTACTTTTCATGGAG 59.394 37.037 0.00 0.00 0.00 3.86
166 167 7.453393 AGAGACACAGATTTACTTTTCATGGA 58.547 34.615 0.00 0.00 0.00 3.41
167 168 7.412346 CGAGAGACACAGATTTACTTTTCATGG 60.412 40.741 0.00 0.00 0.00 3.66
168 169 7.116948 ACGAGAGACACAGATTTACTTTTCATG 59.883 37.037 0.00 0.00 0.00 3.07
169 170 7.116948 CACGAGAGACACAGATTTACTTTTCAT 59.883 37.037 0.00 0.00 0.00 2.57
170 171 6.420903 CACGAGAGACACAGATTTACTTTTCA 59.579 38.462 0.00 0.00 0.00 2.69
171 172 6.641314 TCACGAGAGACACAGATTTACTTTTC 59.359 38.462 0.00 0.00 0.00 2.29
172 173 6.513180 TCACGAGAGACACAGATTTACTTTT 58.487 36.000 0.00 0.00 0.00 2.27
173 174 6.085555 TCACGAGAGACACAGATTTACTTT 57.914 37.500 0.00 0.00 0.00 2.66
177 178 5.243060 TCCTTTCACGAGAGACACAGATTTA 59.757 40.000 0.00 0.00 0.00 1.40
183 184 3.812156 TTTCCTTTCACGAGAGACACA 57.188 42.857 0.00 0.00 0.00 3.72
184 185 4.809426 TCTTTTTCCTTTCACGAGAGACAC 59.191 41.667 0.00 0.00 0.00 3.67
187 188 5.424757 TGTTCTTTTTCCTTTCACGAGAGA 58.575 37.500 0.00 0.00 0.00 3.10
218 219 3.119955 GGTCTTTGCTCGGTTTTGGATAC 60.120 47.826 0.00 0.00 0.00 2.24
227 228 1.226746 CTTTTCGGTCTTTGCTCGGT 58.773 50.000 0.00 0.00 0.00 4.69
228 229 0.110192 GCTTTTCGGTCTTTGCTCGG 60.110 55.000 0.00 0.00 0.00 4.63
233 234 6.478673 ACTTATTTTTGGCTTTTCGGTCTTTG 59.521 34.615 0.00 0.00 0.00 2.77
234 235 6.578944 ACTTATTTTTGGCTTTTCGGTCTTT 58.421 32.000 0.00 0.00 0.00 2.52
249 250 9.974980 TTTTCGGCTTTTAGATGACTTATTTTT 57.025 25.926 0.00 0.00 0.00 1.94
254 264 7.174253 ACATGTTTTCGGCTTTTAGATGACTTA 59.826 33.333 0.00 0.00 0.00 2.24
257 267 5.699839 ACATGTTTTCGGCTTTTAGATGAC 58.300 37.500 0.00 0.00 0.00 3.06
262 272 6.236017 TCTGTACATGTTTTCGGCTTTTAG 57.764 37.500 2.30 0.00 0.00 1.85
268 278 7.861176 TTATTTTTCTGTACATGTTTTCGGC 57.139 32.000 2.30 0.00 0.00 5.54
292 302 7.393515 GGGTGCTTCCTCCGATATTTATTATTT 59.606 37.037 0.00 0.00 36.25 1.40
293 303 6.884836 GGGTGCTTCCTCCGATATTTATTATT 59.115 38.462 0.00 0.00 36.25 1.40
294 304 6.012858 TGGGTGCTTCCTCCGATATTTATTAT 60.013 38.462 0.00 0.00 36.25 1.28
295 305 5.308497 TGGGTGCTTCCTCCGATATTTATTA 59.692 40.000 0.00 0.00 36.25 0.98
296 306 4.104102 TGGGTGCTTCCTCCGATATTTATT 59.896 41.667 0.00 0.00 36.25 1.40
297 307 3.650942 TGGGTGCTTCCTCCGATATTTAT 59.349 43.478 0.00 0.00 36.25 1.40
298 308 3.042682 TGGGTGCTTCCTCCGATATTTA 58.957 45.455 0.00 0.00 36.25 1.40
303 313 0.404040 TTTTGGGTGCTTCCTCCGAT 59.596 50.000 0.00 0.00 36.25 4.18
311 321 1.021968 GTGTCGAGTTTTGGGTGCTT 58.978 50.000 0.00 0.00 0.00 3.91
314 324 0.303493 CACGTGTCGAGTTTTGGGTG 59.697 55.000 7.58 0.00 0.00 4.61
315 325 0.176219 TCACGTGTCGAGTTTTGGGT 59.824 50.000 16.51 0.00 0.00 4.51
340 350 2.358003 ACTTGGTGCGCTCTCAGC 60.358 61.111 9.73 0.00 38.02 4.26
341 351 0.390866 ATCACTTGGTGCGCTCTCAG 60.391 55.000 9.73 7.88 32.98 3.35
342 352 0.671472 CATCACTTGGTGCGCTCTCA 60.671 55.000 9.73 2.53 32.98 3.27
343 353 1.975363 GCATCACTTGGTGCGCTCTC 61.975 60.000 9.73 0.00 32.98 3.20
351 361 0.478072 TTGGGAGTGCATCACTTGGT 59.522 50.000 0.66 0.00 45.44 3.67
353 363 1.747355 GGATTGGGAGTGCATCACTTG 59.253 52.381 0.66 0.00 45.44 3.16
360 370 1.074775 GGTGTGGATTGGGAGTGCA 59.925 57.895 0.00 0.00 0.00 4.57
363 373 2.109834 TCATTTGGTGTGGATTGGGAGT 59.890 45.455 0.00 0.00 0.00 3.85
367 377 5.172934 CAAGAATCATTTGGTGTGGATTGG 58.827 41.667 0.00 0.00 30.60 3.16
368 378 4.628333 GCAAGAATCATTTGGTGTGGATTG 59.372 41.667 0.00 0.00 30.60 2.67
371 381 2.228582 CGCAAGAATCATTTGGTGTGGA 59.771 45.455 0.00 0.00 43.02 4.02
381 391 0.753111 GGAAGCCCCGCAAGAATCAT 60.753 55.000 0.00 0.00 43.02 2.45
385 395 0.035439 CTTAGGAAGCCCCGCAAGAA 60.035 55.000 4.98 0.00 40.87 2.52
386 396 1.602237 CTTAGGAAGCCCCGCAAGA 59.398 57.895 4.98 0.00 40.87 3.02
454 472 3.592814 CGGAGCTCCATACGGCGA 61.593 66.667 31.67 0.00 35.14 5.54
473 492 1.885163 CTCGGTACCAGCGACCCTTT 61.885 60.000 13.54 0.00 43.66 3.11
499 524 1.634702 TGCCACTTTGTTTTGAACGC 58.365 45.000 0.00 0.00 0.00 4.84
500 525 3.303229 GTCTTGCCACTTTGTTTTGAACG 59.697 43.478 0.00 0.00 0.00 3.95
501 526 3.616821 GGTCTTGCCACTTTGTTTTGAAC 59.383 43.478 0.00 0.00 37.17 3.18
502 527 3.259374 TGGTCTTGCCACTTTGTTTTGAA 59.741 39.130 0.00 0.00 43.61 2.69
503 528 2.828520 TGGTCTTGCCACTTTGTTTTGA 59.171 40.909 0.00 0.00 43.61 2.69
504 529 3.189285 CTGGTCTTGCCACTTTGTTTTG 58.811 45.455 0.00 0.00 43.61 2.44
587 632 0.179158 GAAGAAGACTCGGTCGGCTC 60.179 60.000 0.00 0.00 37.67 4.70
588 633 1.596895 GGAAGAAGACTCGGTCGGCT 61.597 60.000 0.00 0.00 37.67 5.52
760 807 2.440247 CGGAGTGGATTTGGGGGC 60.440 66.667 0.00 0.00 0.00 5.80
962 1020 1.292223 GTCCTTGTGGCGCTGTCTA 59.708 57.895 7.64 0.00 0.00 2.59
963 1021 2.031163 GTCCTTGTGGCGCTGTCT 59.969 61.111 7.64 0.00 0.00 3.41
998 1056 3.087906 ACGGCAGGTACCCCATCC 61.088 66.667 8.74 3.79 0.00 3.51
1170 1564 2.266554 CTGAAATGGAGACGAGCACTC 58.733 52.381 0.00 0.00 0.00 3.51
1392 1793 5.820423 TCCCACAGTTTATATTTGACCGATG 59.180 40.000 0.00 0.00 0.00 3.84
1514 1916 4.613437 ACTGGAATAGGCACCAATTCATT 58.387 39.130 0.00 0.00 34.21 2.57
1537 1939 1.267806 GCCCAAACACACACATGAGAG 59.732 52.381 0.00 0.00 0.00 3.20
1550 1952 0.679505 GGGTTCTCCAAAGCCCAAAC 59.320 55.000 0.00 0.00 40.76 2.93
1605 2008 4.680440 GCAAACCAAACATCATATCACCCC 60.680 45.833 0.00 0.00 0.00 4.95
1794 2197 3.596066 CTCCACCCAGGCACTCACG 62.596 68.421 0.00 0.00 34.60 4.35
1795 2198 2.217038 TCTCCACCCAGGCACTCAC 61.217 63.158 0.00 0.00 34.60 3.51
1796 2199 2.204034 TCTCCACCCAGGCACTCA 59.796 61.111 0.00 0.00 34.60 3.41
1797 2200 2.665603 GTCTCCACCCAGGCACTC 59.334 66.667 0.00 0.00 34.60 3.51
1798 2201 2.930562 GGTCTCCACCCAGGCACT 60.931 66.667 0.00 0.00 36.54 4.40
1806 2209 3.391382 CCTGACCGGGTCTCCACC 61.391 72.222 26.41 1.43 42.90 4.61
1807 2210 2.283676 TCCTGACCGGGTCTCCAC 60.284 66.667 26.41 2.19 33.15 4.02
1808 2211 2.283676 GTCCTGACCGGGTCTCCA 60.284 66.667 26.41 7.76 33.15 3.86
1809 2212 3.075641 GGTCCTGACCGGGTCTCC 61.076 72.222 26.41 18.42 42.29 3.71
1817 2220 3.151414 CACTAGCGTGAGGTCCTGACC 62.151 61.905 8.31 8.31 43.97 4.02
1818 2221 0.171455 CACTAGCGTGAGGTCCTGAC 59.829 60.000 0.00 0.00 43.97 3.51
1819 2222 1.595993 GCACTAGCGTGAGGTCCTGA 61.596 60.000 0.00 0.00 43.97 3.86
1856 2259 6.068010 ACCATACAAACAGGAACTCAATGAA 58.932 36.000 0.00 0.00 34.60 2.57
1888 2292 7.227049 TGTCAGGTTCAGTTTCTTTTCTTTT 57.773 32.000 0.00 0.00 0.00 2.27
1917 2321 6.258160 CCAATTGCTCCTAAACAAGTTATCG 58.742 40.000 0.00 0.00 0.00 2.92
1981 2390 5.381757 TGAACTTTAAGCTTCTAGCCCAAA 58.618 37.500 0.00 0.00 43.77 3.28
2166 2580 5.424068 TGGGTATTCCATATCCAGATCCTT 58.576 41.667 0.00 0.00 41.02 3.36
2327 2741 9.941664 ATTGACTCTATTTGATTTGCTATTTCG 57.058 29.630 0.00 0.00 0.00 3.46
2411 2825 2.890808 TCGATGGTTCAGACATAGGC 57.109 50.000 0.00 0.00 0.00 3.93
2872 3287 9.590451 AAATTTCATATGCACCAGTAAAATGAG 57.410 29.630 0.00 0.00 0.00 2.90
3007 3422 1.926665 TGCTGGTACCCCCATGTTTAT 59.073 47.619 10.07 0.00 44.15 1.40
3014 3429 2.798760 AATCCCTGCTGGTACCCCCA 62.799 60.000 10.07 5.41 42.51 4.96
3086 3763 2.232208 GGCCAAACAGGAGGAAAATCTG 59.768 50.000 0.00 0.00 41.22 2.90
3087 3764 2.529632 GGCCAAACAGGAGGAAAATCT 58.470 47.619 0.00 0.00 41.22 2.40
3119 3796 1.682087 GGGGCCGAGAGCTGTTAAAAT 60.682 52.381 0.00 0.00 43.05 1.82
3231 3909 6.598064 CCAGGGAATTACGTAGACAGAAATTT 59.402 38.462 0.00 0.00 0.00 1.82
3297 3975 0.535102 AGCTTCCCTTGTGTTCACGG 60.535 55.000 0.00 0.00 33.45 4.94
3454 4132 8.191534 ACTTAACTTACTGACCTCAATAGTGT 57.808 34.615 0.00 0.00 0.00 3.55
3567 4247 5.176223 GTGTCTAAGGACGAAATCAAACGAA 59.824 40.000 0.00 0.00 44.83 3.85
3800 4518 5.241403 TGTGTGGAAGTGAAACCTGATAT 57.759 39.130 0.00 0.00 37.80 1.63
3935 4653 1.067974 TGACGATATACAACAGGGCGG 59.932 52.381 0.00 0.00 0.00 6.13
3979 4697 5.070847 TCTCTTATGCAATGCAGATCCTGTA 59.929 40.000 14.98 0.00 43.65 2.74
3987 4705 7.012138 AGAGTGTATTTCTCTTATGCAATGCAG 59.988 37.037 14.98 0.00 39.41 4.41
4080 4798 2.423538 GGCACATCTCATGGTTTGTACC 59.576 50.000 0.00 0.00 45.26 3.34
4169 4895 9.736023 AAAGTTATCACAACATTTTCTCTGAAC 57.264 29.630 0.00 0.00 0.00 3.18
4327 5053 0.699399 TTGCCAAATACTCGGGGGAA 59.301 50.000 0.00 0.00 0.00 3.97
4333 5059 1.949525 CCTCCCATTGCCAAATACTCG 59.050 52.381 0.00 0.00 0.00 4.18
4411 5137 4.834357 TGTGTGACAATGTGGAAAGATG 57.166 40.909 0.00 0.00 0.00 2.90
4449 5175 4.541779 GCACACGGACAAATTAACATGAA 58.458 39.130 0.00 0.00 0.00 2.57
4460 5186 1.944024 CTAAAGTTGGCACACGGACAA 59.056 47.619 0.00 0.00 44.08 3.18
4518 5251 6.656270 TGATCAACAAGATGTTAAGCTGATGT 59.344 34.615 0.00 0.00 38.77 3.06
4557 5290 4.974275 CACAGATCAAACAGCAAAAGTGAG 59.026 41.667 0.00 0.00 0.00 3.51
4602 5335 4.815846 GGGTTGTTAAACGTTTCTGAGGTA 59.184 41.667 18.42 0.00 37.15 3.08
4680 5413 8.798859 AGAATTGACCCATATGCATAGTAATC 57.201 34.615 12.79 7.99 0.00 1.75
4681 5414 8.385491 TGAGAATTGACCCATATGCATAGTAAT 58.615 33.333 12.79 3.89 0.00 1.89
4682 5415 7.744733 TGAGAATTGACCCATATGCATAGTAA 58.255 34.615 12.79 0.00 0.00 2.24
4695 5428 1.213926 AGGGATGCTGAGAATTGACCC 59.786 52.381 0.00 0.00 36.67 4.46
4700 5433 3.011032 AGGAAACAGGGATGCTGAGAATT 59.989 43.478 0.00 0.00 0.00 2.17
4846 5579 3.242936 CGGTTCCGAAAAGTTGTGAACAT 60.243 43.478 5.19 0.00 37.61 2.71
4883 5616 3.181445 ACAAGCCATCAGAACAACACCTA 60.181 43.478 0.00 0.00 0.00 3.08
4891 5624 5.701290 ACTAAACTGTACAAGCCATCAGAAC 59.299 40.000 0.00 0.00 0.00 3.01
4913 5646 7.688343 ACTCTAACGAGGCCTATATACTTACT 58.312 38.462 4.42 0.00 41.71 2.24
4990 5724 5.073311 TCTTGTTTCACCTCCTTAGATCG 57.927 43.478 0.00 0.00 0.00 3.69
4997 5758 0.603975 GCGCTCTTGTTTCACCTCCT 60.604 55.000 0.00 0.00 0.00 3.69
5021 5782 1.490490 AGTTGCTCCAGTCAAGTTCCA 59.510 47.619 0.00 0.00 0.00 3.53
5022 5783 2.262423 AGTTGCTCCAGTCAAGTTCC 57.738 50.000 0.00 0.00 0.00 3.62
5024 5785 2.173569 AGGAAGTTGCTCCAGTCAAGTT 59.826 45.455 0.00 0.00 39.13 2.66
5026 5787 2.149578 CAGGAAGTTGCTCCAGTCAAG 58.850 52.381 0.00 0.00 38.02 3.02
5027 5788 1.768275 TCAGGAAGTTGCTCCAGTCAA 59.232 47.619 0.00 0.00 38.02 3.18
5029 5790 2.626840 GATCAGGAAGTTGCTCCAGTC 58.373 52.381 0.00 0.00 38.02 3.51
5030 5791 1.066573 CGATCAGGAAGTTGCTCCAGT 60.067 52.381 0.00 0.00 38.02 4.00
5031 5792 1.066573 ACGATCAGGAAGTTGCTCCAG 60.067 52.381 0.00 0.00 38.02 3.86
5137 5900 2.126914 ATCAGCGCTTCGAGTGTATC 57.873 50.000 7.50 0.00 0.00 2.24
5140 5903 1.405463 TGATATCAGCGCTTCGAGTGT 59.595 47.619 7.50 0.00 0.00 3.55
5143 5906 4.666237 TCATATGATATCAGCGCTTCGAG 58.334 43.478 7.50 0.00 0.00 4.04
5145 5908 4.666237 TCTCATATGATATCAGCGCTTCG 58.334 43.478 7.50 0.00 0.00 3.79
5149 5912 3.551082 GCACTCTCATATGATATCAGCGC 59.449 47.826 11.78 0.00 0.00 5.92
5153 5916 5.541484 AGGTGTGCACTCTCATATGATATCA 59.459 40.000 19.41 8.10 0.00 2.15
5204 5972 9.939424 ACAGAGGGAGTACTATAAGTATTTCTT 57.061 33.333 0.00 0.00 39.89 2.52
5214 5982 9.263446 ACATTTGTTTACAGAGGGAGTACTATA 57.737 33.333 0.00 0.00 0.00 1.31
5215 5983 8.147244 ACATTTGTTTACAGAGGGAGTACTAT 57.853 34.615 0.00 0.00 0.00 2.12
5231 5999 8.491331 ACTGCAAAAACATCTTACATTTGTTT 57.509 26.923 0.00 0.00 43.41 2.83
5232 6000 8.491331 AACTGCAAAAACATCTTACATTTGTT 57.509 26.923 0.00 0.00 35.19 2.83
5233 6001 8.491331 AAACTGCAAAAACATCTTACATTTGT 57.509 26.923 0.00 0.00 34.37 2.83
5236 6004 9.816354 ACTTAAACTGCAAAAACATCTTACATT 57.184 25.926 0.00 0.00 0.00 2.71
5237 6005 9.816354 AACTTAAACTGCAAAAACATCTTACAT 57.184 25.926 0.00 0.00 0.00 2.29
5245 6013 7.547370 AGCAACATAACTTAAACTGCAAAAACA 59.453 29.630 0.00 0.00 0.00 2.83
5251 6019 5.762711 TCAGAGCAACATAACTTAAACTGCA 59.237 36.000 0.00 0.00 0.00 4.41
5253 6021 7.587757 GTGTTCAGAGCAACATAACTTAAACTG 59.412 37.037 0.00 0.00 38.53 3.16
5254 6022 7.499232 AGTGTTCAGAGCAACATAACTTAAACT 59.501 33.333 0.00 0.00 38.53 2.66
5255 6023 7.639945 AGTGTTCAGAGCAACATAACTTAAAC 58.360 34.615 0.00 0.00 38.53 2.01
5259 6104 5.239525 GGAAGTGTTCAGAGCAACATAACTT 59.760 40.000 0.00 0.00 38.53 2.66
5261 6106 4.515191 TGGAAGTGTTCAGAGCAACATAAC 59.485 41.667 0.00 0.00 38.53 1.89
5265 6110 2.288666 GTGGAAGTGTTCAGAGCAACA 58.711 47.619 0.00 0.00 33.75 3.33
5266 6111 1.604278 GGTGGAAGTGTTCAGAGCAAC 59.396 52.381 0.00 0.00 0.00 4.17
5270 6115 2.487934 CACAGGTGGAAGTGTTCAGAG 58.512 52.381 0.00 0.00 0.00 3.35
5291 6136 2.628178 GGTGGAAGTTCTTTTCCCCAAG 59.372 50.000 2.25 0.00 44.93 3.61
5292 6137 2.246327 AGGTGGAAGTTCTTTTCCCCAA 59.754 45.455 2.25 0.00 44.93 4.12
5293 6138 1.856920 AGGTGGAAGTTCTTTTCCCCA 59.143 47.619 2.25 0.00 44.93 4.96
5294 6139 2.239400 CAGGTGGAAGTTCTTTTCCCC 58.761 52.381 2.25 3.93 44.93 4.81
5295 6140 2.623416 CACAGGTGGAAGTTCTTTTCCC 59.377 50.000 2.25 0.00 44.93 3.97
5297 6142 2.952310 AGCACAGGTGGAAGTTCTTTTC 59.048 45.455 2.25 0.00 0.00 2.29
5298 6143 3.018423 AGCACAGGTGGAAGTTCTTTT 57.982 42.857 2.25 0.00 0.00 2.27
5299 6144 2.689983 CAAGCACAGGTGGAAGTTCTTT 59.310 45.455 2.25 0.00 0.00 2.52
5300 6145 2.301346 CAAGCACAGGTGGAAGTTCTT 58.699 47.619 2.25 0.00 0.00 2.52
5301 6146 1.477558 CCAAGCACAGGTGGAAGTTCT 60.478 52.381 2.25 0.00 37.03 3.01
5302 6147 0.954452 CCAAGCACAGGTGGAAGTTC 59.046 55.000 1.10 0.00 37.03 3.01
5303 6148 0.468029 CCCAAGCACAGGTGGAAGTT 60.468 55.000 1.10 0.00 37.03 2.66
5304 6149 1.151450 CCCAAGCACAGGTGGAAGT 59.849 57.895 1.10 0.00 37.03 3.01
5305 6150 0.178992 TTCCCAAGCACAGGTGGAAG 60.179 55.000 1.10 0.00 37.03 3.46
5306 6151 0.260230 TTTCCCAAGCACAGGTGGAA 59.740 50.000 1.10 0.00 37.03 3.53
5307 6152 0.260230 TTTTCCCAAGCACAGGTGGA 59.740 50.000 1.10 0.00 37.03 4.02
5308 6153 1.069049 CTTTTTCCCAAGCACAGGTGG 59.931 52.381 1.10 0.00 34.44 4.61
5309 6154 1.069049 CCTTTTTCCCAAGCACAGGTG 59.931 52.381 0.00 0.00 0.00 4.00
5310 6155 1.063266 TCCTTTTTCCCAAGCACAGGT 60.063 47.619 0.00 0.00 0.00 4.00
5311 6156 1.615392 CTCCTTTTTCCCAAGCACAGG 59.385 52.381 0.00 0.00 0.00 4.00
5312 6157 1.615392 CCTCCTTTTTCCCAAGCACAG 59.385 52.381 0.00 0.00 0.00 3.66
5313 6158 1.216678 TCCTCCTTTTTCCCAAGCACA 59.783 47.619 0.00 0.00 0.00 4.57
5314 6159 1.889170 CTCCTCCTTTTTCCCAAGCAC 59.111 52.381 0.00 0.00 0.00 4.40
5315 6160 1.203050 CCTCCTCCTTTTTCCCAAGCA 60.203 52.381 0.00 0.00 0.00 3.91
5316 6161 1.075536 TCCTCCTCCTTTTTCCCAAGC 59.924 52.381 0.00 0.00 0.00 4.01
5317 6162 3.074538 TCTTCCTCCTCCTTTTTCCCAAG 59.925 47.826 0.00 0.00 0.00 3.61
5318 6163 3.060611 TCTTCCTCCTCCTTTTTCCCAA 58.939 45.455 0.00 0.00 0.00 4.12
5319 6164 2.713595 TCTTCCTCCTCCTTTTTCCCA 58.286 47.619 0.00 0.00 0.00 4.37
5320 6165 3.330998 TCTTCTTCCTCCTCCTTTTTCCC 59.669 47.826 0.00 0.00 0.00 3.97
5321 6166 4.642466 TCTTCTTCCTCCTCCTTTTTCC 57.358 45.455 0.00 0.00 0.00 3.13
5322 6167 5.645929 GTCATCTTCTTCCTCCTCCTTTTTC 59.354 44.000 0.00 0.00 0.00 2.29
5323 6168 5.073691 TGTCATCTTCTTCCTCCTCCTTTTT 59.926 40.000 0.00 0.00 0.00 1.94
5327 6172 3.481559 TGTCATCTTCTTCCTCCTCCT 57.518 47.619 0.00 0.00 0.00 3.69
5329 6174 6.068010 TCTAGATGTCATCTTCTTCCTCCTC 58.932 44.000 20.27 0.00 40.76 3.71
5337 6182 7.704472 GTGTCGATTTTCTAGATGTCATCTTCT 59.296 37.037 20.27 0.00 40.76 2.85
5366 6211 0.961019 GAGGCCACATCAAGCAAACA 59.039 50.000 5.01 0.00 0.00 2.83
5367 6212 0.961019 TGAGGCCACATCAAGCAAAC 59.039 50.000 5.01 0.00 0.00 2.93
5369 6214 1.236616 CGTGAGGCCACATCAAGCAA 61.237 55.000 6.04 0.00 43.34 3.91
5388 6233 1.331399 CGTCTTCCTCCTTCCCTCCC 61.331 65.000 0.00 0.00 0.00 4.30
5392 6237 0.974383 TTGTCGTCTTCCTCCTTCCC 59.026 55.000 0.00 0.00 0.00 3.97
5402 6247 3.431922 TGAGTTTCTCGTTGTCGTCTT 57.568 42.857 0.00 0.00 38.33 3.01
5406 6251 3.245284 ACACATTGAGTTTCTCGTTGTCG 59.755 43.478 0.00 0.00 32.35 4.35
5411 6256 3.069586 TGAGGACACATTGAGTTTCTCGT 59.930 43.478 11.01 0.00 32.35 4.18
5414 6259 3.244700 CCCTGAGGACACATTGAGTTTCT 60.245 47.826 0.00 0.00 33.47 2.52
5429 6274 1.268283 GGAGGTCACTTCCCCTGAGG 61.268 65.000 0.00 0.00 0.00 3.86
5430 6275 0.545309 TGGAGGTCACTTCCCCTGAG 60.545 60.000 2.95 0.00 0.00 3.35
5431 6276 0.119155 ATGGAGGTCACTTCCCCTGA 59.881 55.000 2.95 0.00 0.00 3.86
5433 6278 0.119155 TCATGGAGGTCACTTCCCCT 59.881 55.000 2.95 0.00 0.00 4.79
5434 6279 0.543749 CTCATGGAGGTCACTTCCCC 59.456 60.000 2.95 0.00 0.00 4.81
5435 6280 1.484240 CTCTCATGGAGGTCACTTCCC 59.516 57.143 2.95 0.00 38.35 3.97
5436 6281 1.134551 GCTCTCATGGAGGTCACTTCC 60.135 57.143 0.00 0.00 42.08 3.46
5437 6282 1.552337 TGCTCTCATGGAGGTCACTTC 59.448 52.381 11.63 0.00 42.08 3.01
5539 6588 3.956744 ACCAAGCAACTCTATTCTTCCC 58.043 45.455 0.00 0.00 0.00 3.97
5576 6625 9.320295 TCCTAAATTGAATCACCCAAAGTTATT 57.680 29.630 0.00 0.00 0.00 1.40
5577 6626 8.893563 TCCTAAATTGAATCACCCAAAGTTAT 57.106 30.769 0.00 0.00 0.00 1.89
5578 6627 8.713708 TTCCTAAATTGAATCACCCAAAGTTA 57.286 30.769 0.00 0.00 0.00 2.24
5600 6649 2.879103 TGGTTCATGGAGGAACTTCC 57.121 50.000 0.00 0.00 45.07 3.46
5601 6650 4.082026 CCAAATGGTTCATGGAGGAACTTC 60.082 45.833 4.36 0.00 45.07 3.01
5602 6651 3.834231 CCAAATGGTTCATGGAGGAACTT 59.166 43.478 4.36 0.00 45.07 2.66
5603 6652 3.434309 CCAAATGGTTCATGGAGGAACT 58.566 45.455 4.36 0.00 45.07 3.01
5604 6653 3.874392 CCAAATGGTTCATGGAGGAAC 57.126 47.619 0.00 0.00 45.01 3.62
5620 9320 5.321927 GGGAACTCTAATCCTTTGACCAAA 58.678 41.667 0.00 0.00 37.14 3.28
5630 9330 4.691326 AGGAATTCGGGAACTCTAATCC 57.309 45.455 0.00 0.00 36.16 3.01
5633 9333 6.439692 ACTTCTTAGGAATTCGGGAACTCTAA 59.560 38.462 0.00 0.00 0.00 2.10
5641 9341 3.939592 GGAACACTTCTTAGGAATTCGGG 59.060 47.826 0.00 0.00 0.00 5.14
5643 9343 4.833390 AGGGAACACTTCTTAGGAATTCG 58.167 43.478 0.00 0.00 0.00 3.34
5658 9359 7.741785 TGAACTTTCTATGAAACTAGGGAACA 58.258 34.615 0.00 0.00 0.00 3.18
5675 9376 9.750125 AAACTTTTGAGACCATATTGAACTTTC 57.250 29.630 0.00 0.00 0.00 2.62
5697 9398 9.586435 CTGGACTTCTCAAAAACAAAATAAACT 57.414 29.630 0.00 0.00 0.00 2.66
5698 9399 9.366216 ACTGGACTTCTCAAAAACAAAATAAAC 57.634 29.630 0.00 0.00 0.00 2.01
5711 10078 7.129457 AGATATATTGCACTGGACTTCTCAA 57.871 36.000 0.00 0.00 0.00 3.02
5726 10093 8.361139 ACTCGGGAGAAAACACTAGATATATTG 58.639 37.037 2.08 0.00 39.18 1.90
5732 10099 4.081586 GGAACTCGGGAGAAAACACTAGAT 60.082 45.833 2.08 0.00 39.18 1.98
5736 10103 2.047830 AGGAACTCGGGAGAAAACACT 58.952 47.619 2.08 0.00 39.18 3.55
5798 10165 6.920569 AAGTGTAGAATTTTGACGAGTGTT 57.079 33.333 0.00 0.00 0.00 3.32
5799 10166 6.920569 AAAGTGTAGAATTTTGACGAGTGT 57.079 33.333 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.