Multiple sequence alignment - TraesCS7D01G181300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G181300 chr7D 100.000 3586 0 0 1 3586 135347634 135351219 0.000000e+00 6623.0
1 TraesCS7D01G181300 chr7D 97.569 617 7 3 1 617 86757488 86756880 0.000000e+00 1050.0
2 TraesCS7D01G181300 chr7D 75.481 1248 186 73 873 2034 30845177 30843964 1.920000e-137 499.0
3 TraesCS7D01G181300 chr7B 91.098 2314 110 42 614 2871 97181741 97184014 0.000000e+00 3044.0
4 TraesCS7D01G181300 chr7B 89.779 362 23 7 2885 3233 97184092 97184452 5.460000e-123 451.0
5 TraesCS7D01G181300 chr7B 88.235 136 8 5 3369 3502 97184465 97184594 4.790000e-34 156.0
6 TraesCS7D01G181300 chr7A 92.206 1732 87 15 614 2304 134481145 134482869 0.000000e+00 2407.0
7 TraesCS7D01G181300 chr7A 94.921 571 25 3 2355 2923 134482867 134483435 0.000000e+00 891.0
8 TraesCS7D01G181300 chr7A 87.816 673 32 23 2880 3526 134484937 134485585 0.000000e+00 743.0
9 TraesCS7D01G181300 chr7A 73.380 1867 312 117 714 2448 31107655 31105842 1.140000e-144 523.0
10 TraesCS7D01G181300 chr7A 89.109 101 4 1 3493 3586 134485601 134485701 6.290000e-23 119.0
11 TraesCS7D01G181300 chr7A 94.444 54 2 1 2818 2871 134484848 134484900 8.250000e-12 82.4
12 TraesCS7D01G181300 chr4D 97.886 615 6 2 1 615 55301189 55301796 0.000000e+00 1057.0
13 TraesCS7D01G181300 chr1D 97.083 617 10 3 1 616 258343977 258344586 0.000000e+00 1033.0
14 TraesCS7D01G181300 chr1D 96.486 626 5 5 1 615 474060312 474060931 0.000000e+00 1018.0
15 TraesCS7D01G181300 chr5D 94.071 624 17 6 1 614 139511992 139512605 0.000000e+00 929.0
16 TraesCS7D01G181300 chr5D 92.308 624 15 5 1 615 142081080 142081679 0.000000e+00 856.0
17 TraesCS7D01G181300 chr5D 95.556 45 2 0 1285 1329 538441971 538441927 4.970000e-09 73.1
18 TraesCS7D01G181300 chr6B 93.175 630 17 6 1 615 368761002 368760384 0.000000e+00 902.0
19 TraesCS7D01G181300 chr6B 79.332 629 89 27 2 617 692454176 692453576 1.550000e-108 403.0
20 TraesCS7D01G181300 chr3A 92.528 629 19 4 1 617 452611653 452612265 0.000000e+00 876.0
21 TraesCS7D01G181300 chr3A 79.310 348 62 7 2528 2867 746203476 746203131 5.990000e-58 235.0
22 TraesCS7D01G181300 chr4B 94.249 539 16 5 1 534 454672710 454673238 0.000000e+00 809.0
23 TraesCS7D01G181300 chr4B 92.177 294 7 4 339 617 454673548 454673840 5.580000e-108 401.0
24 TraesCS7D01G181300 chr1B 97.340 188 2 1 431 618 95228725 95228541 2.080000e-82 316.0
25 TraesCS7D01G181300 chr1A 98.065 155 3 0 463 617 464133667 464133821 1.640000e-68 270.0
26 TraesCS7D01G181300 chr3B 80.453 353 57 10 2524 2867 829055544 829055893 3.550000e-65 259.0
27 TraesCS7D01G181300 chr3D 78.736 348 62 10 2529 2867 611305724 611306068 4.660000e-54 222.0
28 TraesCS7D01G181300 chr4A 78.919 370 43 21 999 1339 697947251 697947614 6.030000e-53 219.0
29 TraesCS7D01G181300 chr2B 89.474 114 12 0 1001 1114 153580367 153580480 1.040000e-30 145.0
30 TraesCS7D01G181300 chr2B 83.582 134 18 2 1017 1150 160411583 160411454 4.860000e-24 122.0
31 TraesCS7D01G181300 chr2D 87.097 124 15 1 992 1114 102269835 102269958 4.830000e-29 139.0
32 TraesCS7D01G181300 chr2A 88.596 114 13 0 1001 1114 101372194 101372307 4.830000e-29 139.0
33 TraesCS7D01G181300 chr2A 82.051 156 24 2 990 1144 108013506 108013354 2.910000e-26 130.0
34 TraesCS7D01G181300 chr5B 82.653 98 17 0 3458 3555 356360937 356360840 1.770000e-13 87.9
35 TraesCS7D01G181300 chr5B 95.556 45 2 0 1285 1329 679559558 679559514 4.970000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G181300 chr7D 135347634 135351219 3585 False 6623.00 6623 100.0000 1 3586 1 chr7D.!!$F1 3585
1 TraesCS7D01G181300 chr7D 86756880 86757488 608 True 1050.00 1050 97.5690 1 617 1 chr7D.!!$R2 616
2 TraesCS7D01G181300 chr7D 30843964 30845177 1213 True 499.00 499 75.4810 873 2034 1 chr7D.!!$R1 1161
3 TraesCS7D01G181300 chr7B 97181741 97184594 2853 False 1217.00 3044 89.7040 614 3502 3 chr7B.!!$F1 2888
4 TraesCS7D01G181300 chr7A 134481145 134485701 4556 False 848.48 2407 91.6992 614 3586 5 chr7A.!!$F1 2972
5 TraesCS7D01G181300 chr7A 31105842 31107655 1813 True 523.00 523 73.3800 714 2448 1 chr7A.!!$R1 1734
6 TraesCS7D01G181300 chr4D 55301189 55301796 607 False 1057.00 1057 97.8860 1 615 1 chr4D.!!$F1 614
7 TraesCS7D01G181300 chr1D 258343977 258344586 609 False 1033.00 1033 97.0830 1 616 1 chr1D.!!$F1 615
8 TraesCS7D01G181300 chr1D 474060312 474060931 619 False 1018.00 1018 96.4860 1 615 1 chr1D.!!$F2 614
9 TraesCS7D01G181300 chr5D 139511992 139512605 613 False 929.00 929 94.0710 1 614 1 chr5D.!!$F1 613
10 TraesCS7D01G181300 chr5D 142081080 142081679 599 False 856.00 856 92.3080 1 615 1 chr5D.!!$F2 614
11 TraesCS7D01G181300 chr6B 368760384 368761002 618 True 902.00 902 93.1750 1 615 1 chr6B.!!$R1 614
12 TraesCS7D01G181300 chr6B 692453576 692454176 600 True 403.00 403 79.3320 2 617 1 chr6B.!!$R2 615
13 TraesCS7D01G181300 chr3A 452611653 452612265 612 False 876.00 876 92.5280 1 617 1 chr3A.!!$F1 616
14 TraesCS7D01G181300 chr4B 454672710 454673840 1130 False 605.00 809 93.2130 1 617 2 chr4B.!!$F1 616

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
675 1235 0.322546 AGAAAATCACGGGGGTGAGC 60.323 55.0 3.18 0.0 36.73 4.26 F
677 1237 0.609131 AAAATCACGGGGGTGAGCTG 60.609 55.0 0.00 0.0 36.73 4.24 F
1767 2434 0.684535 TTCAGTTCACCCGCTGATCA 59.315 50.0 0.00 0.0 40.83 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1742 2401 0.527565 GCGGGTGAACTGAATGCAAT 59.472 50.000 0.0 0.0 0.00 3.56 R
1845 2513 1.215647 GTCACGCTTCGGGAGATGT 59.784 57.895 0.0 0.0 41.01 3.06 R
3425 5779 1.414378 CGTACAACATGCACACGAGA 58.586 50.000 0.0 0.0 34.66 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
388 415 2.351276 GGTGGTTCTGTGCGGGAT 59.649 61.111 0.00 0.00 0.00 3.85
670 1230 2.406616 CCGCAGAAAATCACGGGGG 61.407 63.158 0.00 0.00 41.95 5.40
671 1231 1.674322 CGCAGAAAATCACGGGGGT 60.674 57.895 0.00 0.00 0.00 4.95
672 1232 1.883021 GCAGAAAATCACGGGGGTG 59.117 57.895 0.00 0.00 0.00 4.61
673 1233 0.608035 GCAGAAAATCACGGGGGTGA 60.608 55.000 0.00 0.00 37.79 4.02
674 1234 1.453155 CAGAAAATCACGGGGGTGAG 58.547 55.000 3.18 0.00 36.73 3.51
675 1235 0.322546 AGAAAATCACGGGGGTGAGC 60.323 55.000 3.18 0.00 36.73 4.26
676 1236 0.322546 GAAAATCACGGGGGTGAGCT 60.323 55.000 3.18 0.00 36.73 4.09
677 1237 0.609131 AAAATCACGGGGGTGAGCTG 60.609 55.000 0.00 0.00 36.73 4.24
678 1238 3.628646 AATCACGGGGGTGAGCTGC 62.629 63.158 0.00 0.00 36.73 5.25
1192 1783 1.396815 CGCCTTCTCGTTGTTCGTTTC 60.397 52.381 0.00 0.00 40.80 2.78
1211 1823 1.151668 CTTTGACTCGCCTGGTTCTG 58.848 55.000 0.00 0.00 0.00 3.02
1226 1838 3.680786 CTGGGTCGGTGTCGCAGA 61.681 66.667 4.40 0.00 44.77 4.26
1283 1895 3.458163 GCGAGGACACCCCGATCA 61.458 66.667 0.00 0.00 40.87 2.92
1387 2026 7.209475 TCTTTTTCTTTGCCTTCATTCGATTT 58.791 30.769 0.00 0.00 0.00 2.17
1502 2153 5.656859 TCTTCCTCTCCAGTGATAAATTCGA 59.343 40.000 0.00 0.00 0.00 3.71
1513 2167 9.546909 CCAGTGATAAATTCGATGCATATTTAC 57.453 33.333 12.99 6.17 29.43 2.01
1767 2434 0.684535 TTCAGTTCACCCGCTGATCA 59.315 50.000 0.00 0.00 40.83 2.92
1784 2451 3.185594 TGATCAAAACCGACGATGTGTTC 59.814 43.478 0.00 0.00 0.00 3.18
1786 2453 2.285756 TCAAAACCGACGATGTGTTCAC 59.714 45.455 0.00 0.00 0.00 3.18
1812 2479 3.070734 TGTGGGGTTGTTCATTTGGATTG 59.929 43.478 0.00 0.00 0.00 2.67
1845 2513 1.901464 GTTGCCCTTCTGCCGGAAA 60.901 57.895 5.05 0.00 33.07 3.13
2035 2703 1.649171 CGACGTTCAAGGTGAGATTCG 59.351 52.381 0.00 0.00 0.00 3.34
2038 2706 3.318017 ACGTTCAAGGTGAGATTCGAAG 58.682 45.455 3.35 0.00 0.00 3.79
2068 2782 5.041287 GTGAGAATGGATGTGCATTTCATG 58.959 41.667 1.27 0.00 0.00 3.07
2256 2988 3.570975 TCATGACATTATGCATTGGGCTC 59.429 43.478 3.54 0.00 45.15 4.70
2279 3011 4.174009 CTGTGGTTCCGTATGTTGTAGAG 58.826 47.826 0.00 0.00 0.00 2.43
2295 3027 6.256321 TGTTGTAGAGTTAAACCGTTGAGTTC 59.744 38.462 0.00 0.00 0.00 3.01
2333 3065 7.945033 TTTACAAATGAAGATGAAACTTGCC 57.055 32.000 0.00 0.00 0.00 4.52
2344 3077 7.383102 AGATGAAACTTGCCTACATTGTTAG 57.617 36.000 0.00 0.00 0.00 2.34
2434 3171 6.093082 GCAGCATTCCTTCATTTTAAAAGCAT 59.907 34.615 6.79 0.00 0.00 3.79
2536 3295 4.178545 ACAATGCTGCCTTTGTTATGTC 57.821 40.909 11.01 0.00 36.31 3.06
2595 3354 6.961360 ACTATGAACGATGACTTATGAGGA 57.039 37.500 0.00 0.00 0.00 3.71
2648 3407 9.331282 ACTTAGAGCAGGTAAATTGTTCATATC 57.669 33.333 0.00 0.00 0.00 1.63
2812 3574 3.799035 CATCGCAGTTAGTTGTGAACAC 58.201 45.455 0.00 0.00 40.60 3.32
2871 5149 4.380867 GCCAAACTAGTTGCTTACATGCAT 60.381 41.667 9.34 0.00 42.96 3.96
2872 5150 5.335127 CCAAACTAGTTGCTTACATGCATC 58.665 41.667 9.34 0.00 42.96 3.91
2873 5151 5.124457 CCAAACTAGTTGCTTACATGCATCT 59.876 40.000 9.34 0.00 42.96 2.90
2874 5152 6.349611 CCAAACTAGTTGCTTACATGCATCTT 60.350 38.462 9.34 0.00 42.96 2.40
2875 5153 6.824305 AACTAGTTGCTTACATGCATCTTT 57.176 33.333 7.48 0.00 42.96 2.52
2878 5156 7.308435 ACTAGTTGCTTACATGCATCTTTTTC 58.692 34.615 0.00 0.00 42.96 2.29
2879 5157 6.336842 AGTTGCTTACATGCATCTTTTTCT 57.663 33.333 0.00 0.00 42.96 2.52
2880 5158 6.154445 AGTTGCTTACATGCATCTTTTTCTG 58.846 36.000 0.00 0.00 42.96 3.02
2881 5159 5.710513 TGCTTACATGCATCTTTTTCTGT 57.289 34.783 0.00 0.00 38.12 3.41
2954 5299 5.183014 AGTTTGCCTTAACTGTTTGCTAC 57.817 39.130 0.00 3.51 37.00 3.58
2958 5303 2.159881 GCCTTAACTGTTTGCTACGTCG 60.160 50.000 0.00 0.00 0.00 5.12
2999 5344 5.106594 GGAATAAAAACAGCTGGCCAAAATG 60.107 40.000 19.93 8.50 0.00 2.32
3001 5346 2.531522 AAACAGCTGGCCAAAATGTC 57.468 45.000 19.93 0.00 0.00 3.06
3004 5349 0.597568 CAGCTGGCCAAAATGTCGAA 59.402 50.000 7.01 0.00 0.00 3.71
3047 5392 6.772233 TGCTAGGCATTTATGAATTGCTCTTA 59.228 34.615 6.16 0.00 31.71 2.10
3058 5403 7.707624 ATGAATTGCTCTTAGATTGTTTGGA 57.292 32.000 0.00 0.00 0.00 3.53
3074 5419 3.737559 TTGGATGGTGGAAGTAGCATT 57.262 42.857 0.00 0.00 38.76 3.56
3176 5528 4.505922 GCATGAGTATCTGTAGTTCTGTGC 59.494 45.833 0.00 0.00 34.92 4.57
3177 5529 5.654497 CATGAGTATCTGTAGTTCTGTGCA 58.346 41.667 0.00 0.00 34.92 4.57
3178 5530 5.316327 TGAGTATCTGTAGTTCTGTGCAG 57.684 43.478 0.00 0.00 34.92 4.41
3179 5531 4.109050 GAGTATCTGTAGTTCTGTGCAGC 58.891 47.826 0.00 0.00 30.75 5.25
3220 5574 6.161855 TCTTAGAGAAAAGCACACTCTTGA 57.838 37.500 0.00 0.00 40.70 3.02
3221 5575 6.763355 TCTTAGAGAAAAGCACACTCTTGAT 58.237 36.000 0.00 0.00 40.70 2.57
3222 5576 7.896811 TCTTAGAGAAAAGCACACTCTTGATA 58.103 34.615 0.00 0.00 40.70 2.15
3223 5577 8.535335 TCTTAGAGAAAAGCACACTCTTGATAT 58.465 33.333 0.00 0.00 40.70 1.63
3224 5578 9.160496 CTTAGAGAAAAGCACACTCTTGATATT 57.840 33.333 0.00 0.00 40.70 1.28
3225 5579 7.608308 AGAGAAAAGCACACTCTTGATATTC 57.392 36.000 0.00 0.00 37.69 1.75
3226 5580 7.393216 AGAGAAAAGCACACTCTTGATATTCT 58.607 34.615 0.00 0.00 37.69 2.40
3227 5581 7.548780 AGAGAAAAGCACACTCTTGATATTCTC 59.451 37.037 0.00 0.00 37.69 2.87
3228 5582 7.164122 AGAAAAGCACACTCTTGATATTCTCA 58.836 34.615 0.00 0.00 0.00 3.27
3229 5583 6.981762 AAAGCACACTCTTGATATTCTCAG 57.018 37.500 0.00 0.00 34.68 3.35
3230 5584 5.929058 AGCACACTCTTGATATTCTCAGA 57.071 39.130 0.00 0.00 34.68 3.27
3231 5585 6.291648 AGCACACTCTTGATATTCTCAGAA 57.708 37.500 0.00 0.00 34.68 3.02
3235 5589 7.065563 GCACACTCTTGATATTCTCAGAAATGT 59.934 37.037 0.00 0.00 34.68 2.71
3251 5605 6.706270 TCAGAAATGTTCTCAGAAACAGTACC 59.294 38.462 0.00 0.00 42.09 3.34
3262 5616 0.537371 AACAGTACCCACCTTGCTGC 60.537 55.000 0.00 0.00 0.00 5.25
3266 5620 0.527565 GTACCCACCTTGCTGCATTG 59.472 55.000 1.84 1.14 0.00 2.82
3267 5621 0.611618 TACCCACCTTGCTGCATTGG 60.612 55.000 17.06 17.06 0.00 3.16
3283 5637 5.314923 GCATTGGCAGTCTAAAAGAATGA 57.685 39.130 8.44 0.00 42.41 2.57
3420 5774 4.336433 TCAAGGATATAAAGCAGTGCAAGC 59.664 41.667 19.20 4.31 0.00 4.01
3439 5816 1.788258 CTCACTCTCGTGTGCATGTT 58.212 50.000 0.00 0.00 41.89 2.71
3539 5973 8.543774 TCTCTTCTATCTTAATGAAAAGGCAGT 58.456 33.333 0.00 0.00 0.00 4.40
3545 5979 2.299326 AATGAAAAGGCAGTGCTCCT 57.701 45.000 16.11 0.92 34.90 3.69
3572 6006 4.684242 GGTTGCCCGAAGAAAAACTTTATG 59.316 41.667 0.00 0.00 39.13 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
182 190 2.440980 GGCTGCATCTTCCACCCC 60.441 66.667 0.50 0.00 0.00 4.95
388 415 2.292785 ACATCAATATTGCCACCCCCAA 60.293 45.455 10.76 0.00 0.00 4.12
479 1035 0.036306 GAGAAAAAGCTGGGGTCGGA 59.964 55.000 0.00 0.00 0.00 4.55
686 1250 0.457851 AATCTCTCTCGCGAGGGTTG 59.542 55.000 33.58 25.97 38.92 3.77
785 1349 2.251642 GGTGTGTTCGCTGGGTGTC 61.252 63.158 0.00 0.00 0.00 3.67
1036 1613 2.111999 TTGTTCTCCTCCACCTGCCG 62.112 60.000 0.00 0.00 0.00 5.69
1192 1783 1.151668 CAGAACCAGGCGAGTCAAAG 58.848 55.000 0.00 0.00 0.00 2.77
1211 1823 4.736896 GGTCTGCGACACCGACCC 62.737 72.222 10.14 0.00 41.00 4.46
1226 1838 1.415672 TTCCGCTTCAGGGACTTGGT 61.416 55.000 0.00 0.00 34.60 3.67
1387 2026 5.937540 TCAAAAGATGCATTCTTCGGTTAGA 59.062 36.000 0.00 0.00 44.09 2.10
1410 2049 0.806868 CATCCTGCACACACCACATC 59.193 55.000 0.00 0.00 0.00 3.06
1513 2167 7.042051 TCGAAGACAACCAAGAAACAAGATTAG 60.042 37.037 0.00 0.00 0.00 1.73
1737 2396 2.557924 GGTGAACTGAATGCAATGGTGA 59.442 45.455 0.00 0.00 0.00 4.02
1742 2401 0.527565 GCGGGTGAACTGAATGCAAT 59.472 50.000 0.00 0.00 0.00 3.56
1767 2434 2.281517 TGTGAACACATCGTCGGTTTT 58.718 42.857 3.39 0.00 36.21 2.43
1784 2451 3.749665 ATGAACAACCCCACAATTGTG 57.250 42.857 28.18 28.18 45.23 3.33
1786 2453 3.814283 CCAAATGAACAACCCCACAATTG 59.186 43.478 3.24 3.24 0.00 2.32
1845 2513 1.215647 GTCACGCTTCGGGAGATGT 59.784 57.895 0.00 0.00 41.01 3.06
2035 2703 5.757320 CACATCCATTCTCACCAGATACTTC 59.243 44.000 0.00 0.00 0.00 3.01
2038 2706 3.812053 GCACATCCATTCTCACCAGATAC 59.188 47.826 0.00 0.00 0.00 2.24
2089 2803 4.708726 AGAATTGTAAGATGCAACTGGC 57.291 40.909 0.00 0.00 45.13 4.85
2256 2988 2.178912 ACAACATACGGAACCACAGG 57.821 50.000 0.00 0.00 0.00 4.00
2279 3011 3.848554 GCAGCTGAACTCAACGGTTTAAC 60.849 47.826 20.43 0.00 0.00 2.01
2295 3027 7.255491 TCATTTGTAAATAGATCTGCAGCTG 57.745 36.000 10.11 10.11 0.00 4.24
2536 3295 6.932960 TCTGATAATGTAGACCTGCATCATTG 59.067 38.462 1.24 0.00 34.83 2.82
2613 3372 4.760530 ACCTGCTCTAAGTGCATATTCA 57.239 40.909 0.00 0.00 39.86 2.57
2696 3455 6.071728 CCAACAGAACAAGATGCCTAGAAATT 60.072 38.462 0.00 0.00 0.00 1.82
2821 5099 4.679373 TCAAAAATTTGGCCAGCTGTTA 57.321 36.364 13.81 0.00 38.66 2.41
2871 5149 6.039270 CCATGTGAACTACCAACAGAAAAAGA 59.961 38.462 0.00 0.00 0.00 2.52
2872 5150 6.208644 CCATGTGAACTACCAACAGAAAAAG 58.791 40.000 0.00 0.00 0.00 2.27
2873 5151 5.451242 GCCATGTGAACTACCAACAGAAAAA 60.451 40.000 0.00 0.00 0.00 1.94
2874 5152 4.037446 GCCATGTGAACTACCAACAGAAAA 59.963 41.667 0.00 0.00 0.00 2.29
2875 5153 3.568007 GCCATGTGAACTACCAACAGAAA 59.432 43.478 0.00 0.00 0.00 2.52
2878 5156 2.485426 CAGCCATGTGAACTACCAACAG 59.515 50.000 0.00 0.00 0.00 3.16
2879 5157 2.105649 TCAGCCATGTGAACTACCAACA 59.894 45.455 0.00 0.00 0.00 3.33
2880 5158 2.778299 TCAGCCATGTGAACTACCAAC 58.222 47.619 0.00 0.00 0.00 3.77
2881 5159 3.500448 TTCAGCCATGTGAACTACCAA 57.500 42.857 0.00 0.00 31.31 3.67
2954 5299 3.121126 CCTGTTTACAACTAACTGCGACG 60.121 47.826 0.00 0.00 0.00 5.12
2958 5303 9.738832 TTTTTATTCCTGTTTACAACTAACTGC 57.261 29.630 0.00 0.00 0.00 4.40
2979 5324 4.376146 GACATTTTGGCCAGCTGTTTTTA 58.624 39.130 13.81 0.00 0.00 1.52
2999 5344 8.818057 AGCATGTAATCAACTAGTAAATTCGAC 58.182 33.333 0.00 0.00 0.00 4.20
3004 5349 8.210946 TGCCTAGCATGTAATCAACTAGTAAAT 58.789 33.333 0.00 0.00 34.97 1.40
3047 5392 4.118168 ACTTCCACCATCCAAACAATCT 57.882 40.909 0.00 0.00 0.00 2.40
3058 5403 1.559682 ACGGAATGCTACTTCCACCAT 59.440 47.619 11.94 0.00 44.18 3.55
3176 5528 7.473027 AAGAACTGTGAAAATCAATTTGCTG 57.527 32.000 0.00 0.00 0.00 4.41
3177 5529 8.632679 TCTAAGAACTGTGAAAATCAATTTGCT 58.367 29.630 0.00 0.00 0.00 3.91
3178 5530 8.801715 TCTAAGAACTGTGAAAATCAATTTGC 57.198 30.769 0.00 0.00 0.00 3.68
3208 5562 5.929058 TCTGAGAATATCAAGAGTGTGCT 57.071 39.130 0.00 0.00 37.52 4.40
3224 5578 6.586344 ACTGTTTCTGAGAACATTTCTGAGA 58.414 36.000 0.00 1.46 46.12 3.27
3225 5579 6.857777 ACTGTTTCTGAGAACATTTCTGAG 57.142 37.500 0.00 0.00 41.62 3.35
3226 5580 6.706270 GGTACTGTTTCTGAGAACATTTCTGA 59.294 38.462 0.00 0.00 40.87 3.27
3227 5581 6.073003 GGGTACTGTTTCTGAGAACATTTCTG 60.073 42.308 0.00 0.00 40.87 3.02
3228 5582 5.998363 GGGTACTGTTTCTGAGAACATTTCT 59.002 40.000 0.00 0.00 44.21 2.52
3229 5583 5.763204 TGGGTACTGTTTCTGAGAACATTTC 59.237 40.000 0.00 0.00 38.71 2.17
3230 5584 5.531287 GTGGGTACTGTTTCTGAGAACATTT 59.469 40.000 0.00 0.00 38.71 2.32
3231 5585 5.063880 GTGGGTACTGTTTCTGAGAACATT 58.936 41.667 0.00 0.00 38.71 2.71
3235 5589 3.314693 AGGTGGGTACTGTTTCTGAGAA 58.685 45.455 0.00 0.00 0.00 2.87
3251 5605 2.263540 GCCAATGCAGCAAGGTGG 59.736 61.111 16.32 15.99 37.47 4.61
3262 5616 6.258230 TGTCATTCTTTTAGACTGCCAATG 57.742 37.500 0.00 0.00 33.56 2.82
3266 5620 5.920840 GGTTTTGTCATTCTTTTAGACTGCC 59.079 40.000 0.00 0.00 33.56 4.85
3267 5621 6.417930 GTGGTTTTGTCATTCTTTTAGACTGC 59.582 38.462 0.00 0.00 33.56 4.40
3272 5626 9.912634 ACATATGTGGTTTTGTCATTCTTTTAG 57.087 29.630 7.78 0.00 0.00 1.85
3283 5637 9.691362 GATTTAGTTGAACATATGTGGTTTTGT 57.309 29.630 9.63 0.00 0.00 2.83
3316 5670 8.943002 CATTCATGATATCAAGATTCGGAATGA 58.057 33.333 9.99 1.28 36.70 2.57
3372 5726 4.100189 AGCTAGATTTGCCAGTTCGACTAT 59.900 41.667 0.00 0.00 0.00 2.12
3425 5779 1.414378 CGTACAACATGCACACGAGA 58.586 50.000 0.00 0.00 34.66 4.04
3439 5816 4.363999 CCAAATGAAACAAAAGGCGTACA 58.636 39.130 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.