Multiple sequence alignment - TraesCS7D01G180600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G180600 chr7D 100.000 2966 0 0 1 2966 133826240 133829205 0.000000e+00 5478.0
1 TraesCS7D01G180600 chr7D 93.836 1314 67 10 856 2160 133491990 133493298 0.000000e+00 1965.0
2 TraesCS7D01G180600 chr7D 93.683 1314 69 10 856 2160 133612509 133611201 0.000000e+00 1954.0
3 TraesCS7D01G180600 chr7D 83.214 840 100 24 1124 1962 133665609 133664810 0.000000e+00 732.0
4 TraesCS7D01G180600 chr7D 95.425 153 7 0 2303 2455 133500173 133500325 8.210000e-61 244.0
5 TraesCS7D01G180600 chr7D 95.425 153 7 0 2303 2455 133604328 133604176 8.210000e-61 244.0
6 TraesCS7D01G180600 chr7D 97.479 119 3 0 2848 2966 516058450 516058568 1.390000e-48 204.0
7 TraesCS7D01G180600 chr7D 93.458 107 6 1 2206 2311 133611191 133611085 1.100000e-34 158.0
8 TraesCS7D01G180600 chr7D 92.523 107 7 1 2206 2311 133493308 133493414 5.120000e-33 152.0
9 TraesCS7D01G180600 chr7A 93.180 2522 117 20 1 2486 132618028 132620530 0.000000e+00 3653.0
10 TraesCS7D01G180600 chr7A 93.298 1313 70 13 856 2158 132411789 132410485 0.000000e+00 1921.0
11 TraesCS7D01G180600 chr7A 94.017 117 7 0 1192 1308 216416045 216416161 8.450000e-41 178.0
12 TraesCS7D01G180600 chr7A 90.909 66 6 0 170 235 132618164 132618229 4.070000e-14 89.8
13 TraesCS7D01G180600 chr7A 95.349 43 2 0 2804 2846 132620631 132620673 5.300000e-08 69.4
14 TraesCS7D01G180600 chr7B 92.741 1722 82 18 752 2446 95046691 95044986 0.000000e+00 2447.0
15 TraesCS7D01G180600 chr7B 93.457 1238 59 9 856 2076 94811083 94809851 0.000000e+00 1818.0
16 TraesCS7D01G180600 chr7B 93.600 250 16 0 2206 2455 94808823 94808574 1.000000e-99 374.0
17 TraesCS7D01G180600 chr7B 89.796 245 19 4 910 1153 94922132 94921893 2.870000e-80 309.0
18 TraesCS7D01G180600 chr7B 85.500 200 27 2 1 200 537784988 537784791 1.080000e-49 207.0
19 TraesCS7D01G180600 chr7B 86.631 187 21 4 2624 2809 608187714 608187531 1.390000e-48 204.0
20 TraesCS7D01G180600 chr7B 95.385 65 3 0 2076 2140 94809322 94809258 1.450000e-18 104.0
21 TraesCS7D01G180600 chrUn 95.182 1100 52 1 1061 2160 429907488 429906390 0.000000e+00 1736.0
22 TraesCS7D01G180600 chrUn 96.639 119 4 0 2848 2966 51423082 51423200 6.480000e-47 198.0
23 TraesCS7D01G180600 chrUn 93.939 66 3 1 2206 2270 429906380 429906315 6.770000e-17 99.0
24 TraesCS7D01G180600 chr6B 82.527 847 123 17 1121 1965 611500188 611501011 0.000000e+00 721.0
25 TraesCS7D01G180600 chr6B 79.200 500 88 12 1479 1967 611461060 611460566 1.700000e-87 333.0
26 TraesCS7D01G180600 chr6B 89.349 169 16 2 2638 2805 260601306 260601139 8.330000e-51 211.0
27 TraesCS7D01G180600 chr6B 96.639 119 4 0 2848 2966 195274920 195274802 6.480000e-47 198.0
28 TraesCS7D01G180600 chr6B 96.639 119 4 0 2848 2966 611352018 611351900 6.480000e-47 198.0
29 TraesCS7D01G180600 chr6A 81.722 848 128 19 1121 1965 553055016 553055839 0.000000e+00 682.0
30 TraesCS7D01G180600 chr6A 79.641 501 84 12 1479 1967 553003937 553003443 7.870000e-91 344.0
31 TraesCS7D01G180600 chr6D 79.084 502 85 16 1479 1967 407470530 407470036 7.930000e-86 327.0
32 TraesCS7D01G180600 chr4A 87.065 201 23 3 1 200 312675149 312674951 1.070000e-54 224.0
33 TraesCS7D01G180600 chr3D 90.000 170 17 0 2636 2805 395834052 395834221 1.380000e-53 220.0
34 TraesCS7D01G180600 chr2B 86.500 200 25 2 1 200 258044483 258044286 4.980000e-53 219.0
35 TraesCS7D01G180600 chr2B 89.881 168 17 0 2638 2805 766171368 766171201 1.790000e-52 217.0
36 TraesCS7D01G180600 chr2B 89.286 168 18 0 2638 2805 748070500 748070667 8.330000e-51 211.0
37 TraesCS7D01G180600 chr2B 88.068 176 19 2 2631 2805 76824143 76824317 1.080000e-49 207.0
38 TraesCS7D01G180600 chr5B 89.349 169 18 0 2637 2805 695754629 695754797 2.320000e-51 213.0
39 TraesCS7D01G180600 chr5B 89.286 168 18 0 2638 2805 445179614 445179447 8.330000e-51 211.0
40 TraesCS7D01G180600 chr3B 89.286 168 18 0 2638 2805 62389265 62389432 8.330000e-51 211.0
41 TraesCS7D01G180600 chr4D 96.639 119 4 0 2848 2966 468288269 468288151 6.480000e-47 198.0
42 TraesCS7D01G180600 chr4B 96.639 119 4 0 2848 2966 174041831 174041713 6.480000e-47 198.0
43 TraesCS7D01G180600 chr1B 96.639 119 4 0 2848 2966 390272724 390272842 6.480000e-47 198.0
44 TraesCS7D01G180600 chr1B 96.639 119 4 0 2848 2966 636662920 636662802 6.480000e-47 198.0
45 TraesCS7D01G180600 chr1A 96.639 119 4 0 2848 2966 513729489 513729371 6.480000e-47 198.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G180600 chr7D 133826240 133829205 2965 False 5478.000000 5478 100.000000 1 2966 1 chr7D.!!$F2 2965
1 TraesCS7D01G180600 chr7D 133491990 133493414 1424 False 1058.500000 1965 93.179500 856 2311 2 chr7D.!!$F4 1455
2 TraesCS7D01G180600 chr7D 133611085 133612509 1424 True 1056.000000 1954 93.570500 856 2311 2 chr7D.!!$R3 1455
3 TraesCS7D01G180600 chr7D 133664810 133665609 799 True 732.000000 732 83.214000 1124 1962 1 chr7D.!!$R2 838
4 TraesCS7D01G180600 chr7A 132410485 132411789 1304 True 1921.000000 1921 93.298000 856 2158 1 chr7A.!!$R1 1302
5 TraesCS7D01G180600 chr7A 132618028 132620673 2645 False 1270.733333 3653 93.146000 1 2846 3 chr7A.!!$F2 2845
6 TraesCS7D01G180600 chr7B 95044986 95046691 1705 True 2447.000000 2447 92.741000 752 2446 1 chr7B.!!$R2 1694
7 TraesCS7D01G180600 chr7B 94808574 94811083 2509 True 765.333333 1818 94.147333 856 2455 3 chr7B.!!$R5 1599
8 TraesCS7D01G180600 chrUn 429906315 429907488 1173 True 917.500000 1736 94.560500 1061 2270 2 chrUn.!!$R1 1209
9 TraesCS7D01G180600 chr6B 611500188 611501011 823 False 721.000000 721 82.527000 1121 1965 1 chr6B.!!$F1 844
10 TraesCS7D01G180600 chr6A 553055016 553055839 823 False 682.000000 682 81.722000 1121 1965 1 chr6A.!!$F1 844

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
350 352 0.480690 TCTTTAGTTTGGCCAGCCCA 59.519 50.0 5.11 0.0 43.51 5.36 F
1182 1214 0.465824 CCGTCTCCGTCCTCTGGTAT 60.466 60.0 0.00 0.0 0.00 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1215 1247 0.105913 GGGAGAGGAGGAAGTCGGAT 60.106 60.0 0.0 0.0 0.0 4.18 R
2861 3861 0.036388 ACACCCACCAACGATGCTAG 60.036 55.0 0.0 0.0 0.0 3.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 6.263168 GCAAATTGCAACCTAGGTAGTCATAT 59.737 38.462 16.67 1.71 44.26 1.78
42 43 3.709141 TGCAACCTAGGTAGTCATATGCA 59.291 43.478 24.56 24.56 38.78 3.96
58 59 5.369404 TCATATGCAGGGGAAATTAGACTCA 59.631 40.000 0.00 0.00 0.00 3.41
61 62 3.782523 TGCAGGGGAAATTAGACTCAGAT 59.217 43.478 0.00 0.00 0.00 2.90
66 67 7.635971 GCAGGGGAAATTAGACTCAGATAAGAA 60.636 40.741 0.00 0.00 0.00 2.52
69 70 8.925338 GGGGAAATTAGACTCAGATAAGAACTA 58.075 37.037 0.00 0.00 0.00 2.24
114 115 5.021033 AGATGACATAGCTGAAGTTGAGG 57.979 43.478 0.00 0.00 0.00 3.86
152 153 5.644644 CCCTTGCTTGAATTAGCTAACTTG 58.355 41.667 8.70 0.00 41.76 3.16
187 188 9.030452 TCATGGTTTTGTATTGGCTAACTTAAT 57.970 29.630 0.00 0.00 0.00 1.40
191 192 7.544217 GGTTTTGTATTGGCTAACTTAATGGTG 59.456 37.037 0.00 0.00 0.00 4.17
203 204 5.806654 ACTTAATGGTGCTTCATGGTTTT 57.193 34.783 0.00 0.00 0.00 2.43
232 233 6.630444 AGCTAACTTAATGATGCTTCATGG 57.370 37.500 15.21 11.00 41.83 3.66
287 289 2.549563 CGCTCCATCTACCTTGCATCAT 60.550 50.000 0.00 0.00 0.00 2.45
342 344 6.581171 AAATCAGGCTCTTCTTTAGTTTGG 57.419 37.500 0.00 0.00 0.00 3.28
345 347 2.108250 AGGCTCTTCTTTAGTTTGGCCA 59.892 45.455 0.00 0.00 40.61 5.36
347 349 2.095008 GCTCTTCTTTAGTTTGGCCAGC 60.095 50.000 5.11 2.98 0.00 4.85
350 352 0.480690 TCTTTAGTTTGGCCAGCCCA 59.519 50.000 5.11 0.00 43.51 5.36
368 370 3.796844 GCCCAACAGTTTCTTTCAAGCTC 60.797 47.826 0.00 0.00 0.00 4.09
380 382 2.282391 AAGCTCCGCCATTGCACA 60.282 55.556 0.00 0.00 37.32 4.57
392 394 0.869454 ATTGCACACAACCAAACGCG 60.869 50.000 3.53 3.53 38.99 6.01
393 395 1.923227 TTGCACACAACCAAACGCGA 61.923 50.000 15.93 0.00 0.00 5.87
395 397 1.199852 GCACACAACCAAACGCGAAG 61.200 55.000 15.93 0.89 0.00 3.79
412 414 2.539547 CGAAGGGCAAATTAGTGCATCG 60.540 50.000 4.59 7.01 46.81 3.84
425 427 1.412710 GTGCATCGTGGAGGGAGATAA 59.587 52.381 0.00 0.00 0.00 1.75
431 433 2.492088 TCGTGGAGGGAGATAATATGCG 59.508 50.000 0.00 0.00 0.00 4.73
453 455 1.871039 ACAACCGAACTATGTGCACAC 59.129 47.619 24.37 8.11 0.00 3.82
482 484 8.243289 GCTTTTCAGCTTGCATCTTAAAATTA 57.757 30.769 8.22 0.00 43.51 1.40
487 489 6.606796 TCAGCTTGCATCTTAAAATTATGGGA 59.393 34.615 0.00 0.00 0.00 4.37
526 528 2.366916 CGAGATAGAGGGAGTGGCAATT 59.633 50.000 0.00 0.00 0.00 2.32
586 589 8.792830 AATTGGATATAATCTATCACCAACCG 57.207 34.615 0.00 0.00 36.80 4.44
600 603 3.002246 CACCAACCGACACATATGCATAC 59.998 47.826 8.99 0.00 0.00 2.39
604 607 5.392487 CCAACCGACACATATGCATACAAAA 60.392 40.000 8.99 0.00 0.00 2.44
605 608 5.888691 ACCGACACATATGCATACAAAAA 57.111 34.783 8.99 0.00 0.00 1.94
606 609 6.449635 ACCGACACATATGCATACAAAAAT 57.550 33.333 8.99 0.00 0.00 1.82
607 610 6.264832 ACCGACACATATGCATACAAAAATG 58.735 36.000 8.99 5.94 0.00 2.32
608 611 6.094742 ACCGACACATATGCATACAAAAATGA 59.905 34.615 8.99 0.00 0.00 2.57
697 700 6.419771 GTTTCAGTACGTTTTCAGAGAAAGG 58.580 40.000 0.00 0.00 0.00 3.11
714 717 5.848406 AGAAAGGAAGTGAGTAAGTGACTG 58.152 41.667 0.00 0.00 39.06 3.51
715 718 3.669251 AGGAAGTGAGTAAGTGACTGC 57.331 47.619 0.00 0.00 39.06 4.40
741 744 1.168588 GCGCACGCGTTTGTATTAAG 58.831 50.000 10.22 0.00 42.09 1.85
832 835 3.411446 CAACAGCCTGATTACTTGGACA 58.589 45.455 0.00 0.00 0.00 4.02
834 837 4.307032 ACAGCCTGATTACTTGGACAAT 57.693 40.909 0.00 0.00 0.00 2.71
900 915 2.636403 ACCGGGCTCCCTATATAAACAC 59.364 50.000 6.32 0.00 0.00 3.32
990 1019 4.183916 TCTTCCCAAATCTAAACCCCTCT 58.816 43.478 0.00 0.00 0.00 3.69
995 1027 4.228438 CCCAAATCTAAACCCCTCTCTTCT 59.772 45.833 0.00 0.00 0.00 2.85
1014 1046 3.157087 TCTCCAAATGGCCAAGAGAAAC 58.843 45.455 10.96 0.00 30.88 2.78
1015 1047 2.232208 CTCCAAATGGCCAAGAGAAACC 59.768 50.000 10.96 0.00 34.44 3.27
1016 1048 2.158325 TCCAAATGGCCAAGAGAAACCT 60.158 45.455 10.96 0.00 34.44 3.50
1058 1090 2.747460 GCTCGCCACAAGCATGGA 60.747 61.111 5.89 0.00 43.02 3.41
1111 1143 1.852157 ATGTTCCTGGTCCAGCCCA 60.852 57.895 13.99 9.31 36.04 5.36
1182 1214 0.465824 CCGTCTCCGTCCTCTGGTAT 60.466 60.000 0.00 0.00 0.00 2.73
1215 1247 2.202878 GCGCAGAAGGCCATCGTA 60.203 61.111 5.01 0.00 40.31 3.43
1240 1272 0.933700 CTTCCTCCTCTCCCTCTCCT 59.066 60.000 0.00 0.00 0.00 3.69
1488 1529 4.377708 ATCGCGCTGGTGCTCACA 62.378 61.111 5.56 0.00 36.97 3.58
1893 1934 3.584868 GAGCTACAACGCCCACGGT 62.585 63.158 0.00 0.00 46.04 4.83
1998 2039 1.618837 ACAGTGGTAGCGACAAGTGAT 59.381 47.619 15.34 0.00 34.00 3.06
2117 2687 4.067896 GAGCTTGTGTTTGGATCTTCTCA 58.932 43.478 0.00 0.00 0.00 3.27
2196 3186 5.064452 TGGTAATTTTGTTTGTGTCGTACGT 59.936 36.000 16.05 0.00 0.00 3.57
2197 3187 6.256539 TGGTAATTTTGTTTGTGTCGTACGTA 59.743 34.615 16.05 2.87 0.00 3.57
2198 3188 6.569693 GGTAATTTTGTTTGTGTCGTACGTAC 59.430 38.462 15.90 15.90 0.00 3.67
2404 3395 4.880899 TGGCGATGTGACACGTAG 57.119 55.556 0.00 1.61 0.00 3.51
2473 3470 0.604578 TCCTTTTTCATGCTGCTGGC 59.395 50.000 0.00 0.00 42.22 4.85
2486 3483 0.396974 TGCTGGCTGGGTTGTCTTTT 60.397 50.000 0.00 0.00 0.00 2.27
2487 3484 1.133637 TGCTGGCTGGGTTGTCTTTTA 60.134 47.619 0.00 0.00 0.00 1.52
2488 3485 1.541588 GCTGGCTGGGTTGTCTTTTAG 59.458 52.381 0.00 0.00 0.00 1.85
2489 3486 2.814097 GCTGGCTGGGTTGTCTTTTAGA 60.814 50.000 0.00 0.00 0.00 2.10
2490 3487 3.486383 CTGGCTGGGTTGTCTTTTAGAA 58.514 45.455 0.00 0.00 0.00 2.10
2491 3488 3.888930 CTGGCTGGGTTGTCTTTTAGAAA 59.111 43.478 0.00 0.00 0.00 2.52
2492 3489 3.888930 TGGCTGGGTTGTCTTTTAGAAAG 59.111 43.478 0.00 0.00 0.00 2.62
2493 3490 4.142038 GGCTGGGTTGTCTTTTAGAAAGA 58.858 43.478 0.00 0.00 0.00 2.52
2494 3491 4.583073 GGCTGGGTTGTCTTTTAGAAAGAA 59.417 41.667 4.81 0.00 0.00 2.52
2495 3492 5.068591 GGCTGGGTTGTCTTTTAGAAAGAAA 59.931 40.000 4.81 0.00 0.00 2.52
2496 3493 6.406512 GGCTGGGTTGTCTTTTAGAAAGAAAA 60.407 38.462 4.81 3.68 0.00 2.29
2497 3494 7.039270 GCTGGGTTGTCTTTTAGAAAGAAAAA 58.961 34.615 7.42 2.85 0.00 1.94
2525 3522 9.558133 AATCTAGAGATGATATCCAGGAAATCA 57.442 33.333 0.00 0.00 34.49 2.57
2526 3523 8.962912 TCTAGAGATGATATCCAGGAAATCAA 57.037 34.615 0.00 0.00 33.60 2.57
2527 3524 9.033711 TCTAGAGATGATATCCAGGAAATCAAG 57.966 37.037 0.00 0.00 33.60 3.02
2528 3525 7.018487 AGAGATGATATCCAGGAAATCAAGG 57.982 40.000 0.00 0.00 33.60 3.61
2529 3526 5.568392 AGATGATATCCAGGAAATCAAGGC 58.432 41.667 0.00 0.00 33.60 4.35
2530 3527 3.743521 TGATATCCAGGAAATCAAGGCG 58.256 45.455 0.00 0.00 0.00 5.52
2531 3528 1.967319 TATCCAGGAAATCAAGGCGC 58.033 50.000 0.00 0.00 0.00 6.53
2532 3529 0.257039 ATCCAGGAAATCAAGGCGCT 59.743 50.000 7.64 0.00 0.00 5.92
2533 3530 0.677731 TCCAGGAAATCAAGGCGCTG 60.678 55.000 7.64 0.00 0.00 5.18
2534 3531 0.962356 CCAGGAAATCAAGGCGCTGT 60.962 55.000 7.64 0.00 0.00 4.40
2535 3532 1.678728 CCAGGAAATCAAGGCGCTGTA 60.679 52.381 7.64 0.00 0.00 2.74
2536 3533 1.667724 CAGGAAATCAAGGCGCTGTAG 59.332 52.381 7.64 0.00 0.00 2.74
2537 3534 1.017387 GGAAATCAAGGCGCTGTAGG 58.983 55.000 7.64 0.00 0.00 3.18
2538 3535 1.406887 GGAAATCAAGGCGCTGTAGGA 60.407 52.381 7.64 0.00 0.00 2.94
2539 3536 1.936547 GAAATCAAGGCGCTGTAGGAG 59.063 52.381 7.64 0.00 0.00 3.69
2540 3537 1.195115 AATCAAGGCGCTGTAGGAGA 58.805 50.000 7.64 0.00 0.00 3.71
2541 3538 1.195115 ATCAAGGCGCTGTAGGAGAA 58.805 50.000 7.64 0.00 0.00 2.87
2542 3539 0.246635 TCAAGGCGCTGTAGGAGAAC 59.753 55.000 7.64 0.00 0.00 3.01
2543 3540 1.078759 CAAGGCGCTGTAGGAGAACG 61.079 60.000 7.64 0.00 0.00 3.95
2544 3541 1.248785 AAGGCGCTGTAGGAGAACGA 61.249 55.000 7.64 0.00 0.00 3.85
2548 3545 1.926827 GCGCTGTAGGAGAACGATAGC 60.927 57.143 0.00 0.00 42.67 2.97
2570 3570 4.318121 GCGAGGTTATTGTCAAGCTTATCG 60.318 45.833 0.00 7.52 36.42 2.92
2578 3578 1.062525 CAAGCTTATCGGCCGCAAC 59.937 57.895 23.51 7.87 0.00 4.17
2579 3579 2.112815 AAGCTTATCGGCCGCAACC 61.113 57.895 23.51 8.38 0.00 3.77
2587 3587 0.321741 TCGGCCGCAACCAAAATAGA 60.322 50.000 23.51 0.00 0.00 1.98
2604 3604 0.990374 AGAGAGTGATGCCCTTGCTT 59.010 50.000 0.00 0.00 38.71 3.91
2605 3605 1.093159 GAGAGTGATGCCCTTGCTTG 58.907 55.000 0.00 0.00 38.71 4.01
2611 3611 1.376609 GATGCCCTTGCTTGGTACGG 61.377 60.000 0.00 0.00 38.71 4.02
2637 3637 0.815213 AATGTCACGCACTGCTGTGT 60.815 50.000 22.70 5.97 45.44 3.72
2638 3638 0.815213 ATGTCACGCACTGCTGTGTT 60.815 50.000 22.70 9.42 45.44 3.32
2639 3639 1.024046 TGTCACGCACTGCTGTGTTT 61.024 50.000 22.70 9.09 45.44 2.83
2640 3640 0.098728 GTCACGCACTGCTGTGTTTT 59.901 50.000 22.70 6.79 45.44 2.43
2641 3641 0.808125 TCACGCACTGCTGTGTTTTT 59.192 45.000 22.70 4.53 45.44 1.94
2663 3663 6.693315 TTTTTCCGAAAAACTGTCAGATCT 57.307 33.333 13.84 0.00 35.57 2.75
2664 3664 7.795482 TTTTTCCGAAAAACTGTCAGATCTA 57.205 32.000 13.84 0.00 35.57 1.98
2665 3665 7.979444 TTTTCCGAAAAACTGTCAGATCTAT 57.021 32.000 6.91 0.00 29.44 1.98
2666 3666 7.979444 TTTCCGAAAAACTGTCAGATCTATT 57.021 32.000 6.91 0.00 0.00 1.73
2667 3667 7.596749 TTCCGAAAAACTGTCAGATCTATTC 57.403 36.000 6.91 3.27 0.00 1.75
2668 3668 6.697395 TCCGAAAAACTGTCAGATCTATTCA 58.303 36.000 6.91 0.00 0.00 2.57
2669 3669 7.331026 TCCGAAAAACTGTCAGATCTATTCAT 58.669 34.615 6.91 0.00 0.00 2.57
2670 3670 7.492669 TCCGAAAAACTGTCAGATCTATTCATC 59.507 37.037 6.91 0.00 0.00 2.92
2671 3671 7.493971 CCGAAAAACTGTCAGATCTATTCATCT 59.506 37.037 6.91 0.00 33.00 2.90
2672 3672 8.877779 CGAAAAACTGTCAGATCTATTCATCTT 58.122 33.333 6.91 0.00 30.07 2.40
2674 3674 9.730705 AAAAACTGTCAGATCTATTCATCTTCA 57.269 29.630 6.91 0.00 30.07 3.02
2675 3675 9.730705 AAAACTGTCAGATCTATTCATCTTCAA 57.269 29.630 6.91 0.00 30.07 2.69
2676 3676 9.902684 AAACTGTCAGATCTATTCATCTTCAAT 57.097 29.630 6.91 0.00 30.07 2.57
2677 3677 9.545105 AACTGTCAGATCTATTCATCTTCAATC 57.455 33.333 6.91 0.00 30.07 2.67
2678 3678 8.702819 ACTGTCAGATCTATTCATCTTCAATCA 58.297 33.333 6.91 0.00 30.07 2.57
2679 3679 9.713713 CTGTCAGATCTATTCATCTTCAATCAT 57.286 33.333 0.00 0.00 30.07 2.45
2680 3680 9.490379 TGTCAGATCTATTCATCTTCAATCATG 57.510 33.333 0.00 0.00 30.07 3.07
2681 3681 8.937884 GTCAGATCTATTCATCTTCAATCATGG 58.062 37.037 0.00 0.00 30.07 3.66
2682 3682 7.606839 TCAGATCTATTCATCTTCAATCATGGC 59.393 37.037 0.00 0.00 30.07 4.40
2683 3683 7.390718 CAGATCTATTCATCTTCAATCATGGCA 59.609 37.037 0.00 0.00 30.07 4.92
2684 3684 7.608376 AGATCTATTCATCTTCAATCATGGCAG 59.392 37.037 0.00 0.00 27.71 4.85
2685 3685 6.598503 TCTATTCATCTTCAATCATGGCAGT 58.401 36.000 0.00 0.00 0.00 4.40
2686 3686 7.738847 TCTATTCATCTTCAATCATGGCAGTA 58.261 34.615 0.00 0.00 0.00 2.74
2687 3687 6.630444 ATTCATCTTCAATCATGGCAGTAC 57.370 37.500 0.00 0.00 0.00 2.73
2688 3688 4.122046 TCATCTTCAATCATGGCAGTACG 58.878 43.478 0.00 0.00 0.00 3.67
2689 3689 3.885724 TCTTCAATCATGGCAGTACGA 57.114 42.857 0.00 0.00 0.00 3.43
2690 3690 3.521560 TCTTCAATCATGGCAGTACGAC 58.478 45.455 0.00 0.00 0.00 4.34
2691 3691 1.921243 TCAATCATGGCAGTACGACG 58.079 50.000 0.00 0.00 0.00 5.12
2692 3692 1.474879 TCAATCATGGCAGTACGACGA 59.525 47.619 0.00 0.00 0.00 4.20
2693 3693 2.094442 TCAATCATGGCAGTACGACGAA 60.094 45.455 0.00 0.00 0.00 3.85
2694 3694 1.922570 ATCATGGCAGTACGACGAAC 58.077 50.000 0.00 0.00 0.00 3.95
2695 3695 0.599060 TCATGGCAGTACGACGAACA 59.401 50.000 0.00 0.00 0.00 3.18
2696 3696 0.713883 CATGGCAGTACGACGAACAC 59.286 55.000 0.00 0.00 0.00 3.32
2697 3697 0.389426 ATGGCAGTACGACGAACACC 60.389 55.000 0.00 0.00 0.00 4.16
2698 3698 1.007038 GGCAGTACGACGAACACCA 60.007 57.895 0.00 0.00 0.00 4.17
2699 3699 0.598158 GGCAGTACGACGAACACCAA 60.598 55.000 0.00 0.00 0.00 3.67
2700 3700 1.210870 GCAGTACGACGAACACCAAA 58.789 50.000 0.00 0.00 0.00 3.28
2701 3701 1.593933 GCAGTACGACGAACACCAAAA 59.406 47.619 0.00 0.00 0.00 2.44
2702 3702 2.030701 GCAGTACGACGAACACCAAAAA 59.969 45.455 0.00 0.00 0.00 1.94
2703 3703 3.303526 GCAGTACGACGAACACCAAAAAT 60.304 43.478 0.00 0.00 0.00 1.82
2704 3704 4.084433 GCAGTACGACGAACACCAAAAATA 60.084 41.667 0.00 0.00 0.00 1.40
2705 3705 5.558653 GCAGTACGACGAACACCAAAAATAA 60.559 40.000 0.00 0.00 0.00 1.40
2706 3706 6.595794 CAGTACGACGAACACCAAAAATAAT 58.404 36.000 0.00 0.00 0.00 1.28
2707 3707 7.621841 GCAGTACGACGAACACCAAAAATAATA 60.622 37.037 0.00 0.00 0.00 0.98
2708 3708 8.222433 CAGTACGACGAACACCAAAAATAATAA 58.778 33.333 0.00 0.00 0.00 1.40
2709 3709 8.772705 AGTACGACGAACACCAAAAATAATAAA 58.227 29.630 0.00 0.00 0.00 1.40
2710 3710 9.379811 GTACGACGAACACCAAAAATAATAAAA 57.620 29.630 0.00 0.00 0.00 1.52
2711 3711 8.853469 ACGACGAACACCAAAAATAATAAAAA 57.147 26.923 0.00 0.00 0.00 1.94
2712 3712 9.465985 ACGACGAACACCAAAAATAATAAAAAT 57.534 25.926 0.00 0.00 0.00 1.82
2713 3713 9.720569 CGACGAACACCAAAAATAATAAAAATG 57.279 29.630 0.00 0.00 0.00 2.32
2719 3719 9.278978 ACACCAAAAATAATAAAAATGACACCC 57.721 29.630 0.00 0.00 0.00 4.61
2720 3720 9.277783 CACCAAAAATAATAAAAATGACACCCA 57.722 29.630 0.00 0.00 0.00 4.51
2721 3721 9.500785 ACCAAAAATAATAAAAATGACACCCAG 57.499 29.630 0.00 0.00 0.00 4.45
2722 3722 9.717942 CCAAAAATAATAAAAATGACACCCAGA 57.282 29.630 0.00 0.00 0.00 3.86
2730 3730 9.699410 AATAAAAATGACACCCAGATTCATAGA 57.301 29.630 0.00 0.00 29.64 1.98
2731 3731 9.872684 ATAAAAATGACACCCAGATTCATAGAT 57.127 29.630 0.00 0.00 29.64 1.98
2732 3732 7.814264 AAAATGACACCCAGATTCATAGATC 57.186 36.000 0.00 0.00 29.64 2.75
2733 3733 4.590850 TGACACCCAGATTCATAGATCG 57.409 45.455 0.00 0.00 0.00 3.69
2734 3734 3.243873 TGACACCCAGATTCATAGATCGC 60.244 47.826 0.00 0.00 0.00 4.58
2735 3735 2.037772 ACACCCAGATTCATAGATCGCC 59.962 50.000 0.00 0.00 0.00 5.54
2736 3736 2.301296 CACCCAGATTCATAGATCGCCT 59.699 50.000 0.00 0.00 0.00 5.52
2737 3737 3.511540 CACCCAGATTCATAGATCGCCTA 59.488 47.826 0.00 0.00 0.00 3.93
2738 3738 3.766591 ACCCAGATTCATAGATCGCCTAG 59.233 47.826 0.00 0.00 0.00 3.02
2739 3739 3.430098 CCCAGATTCATAGATCGCCTAGC 60.430 52.174 0.00 0.00 0.00 3.42
2750 3750 3.506108 GCCTAGCGACGACTACCA 58.494 61.111 0.00 0.00 0.00 3.25
2751 3751 1.805254 GCCTAGCGACGACTACCAA 59.195 57.895 0.00 0.00 0.00 3.67
2752 3752 0.525029 GCCTAGCGACGACTACCAAC 60.525 60.000 0.00 0.00 0.00 3.77
2753 3753 0.806868 CCTAGCGACGACTACCAACA 59.193 55.000 0.00 0.00 0.00 3.33
2754 3754 1.467035 CCTAGCGACGACTACCAACAC 60.467 57.143 0.00 0.00 0.00 3.32
2755 3755 1.467734 CTAGCGACGACTACCAACACT 59.532 52.381 0.00 0.00 0.00 3.55
2756 3756 0.039437 AGCGACGACTACCAACACTG 60.039 55.000 0.00 0.00 0.00 3.66
2757 3757 0.039798 GCGACGACTACCAACACTGA 60.040 55.000 0.00 0.00 0.00 3.41
2758 3758 1.601162 GCGACGACTACCAACACTGAA 60.601 52.381 0.00 0.00 0.00 3.02
2759 3759 2.316792 CGACGACTACCAACACTGAAG 58.683 52.381 0.00 0.00 0.00 3.02
2760 3760 2.059541 GACGACTACCAACACTGAAGC 58.940 52.381 0.00 0.00 0.00 3.86
2761 3761 1.060713 CGACTACCAACACTGAAGCG 58.939 55.000 0.00 0.00 0.00 4.68
2762 3762 1.335597 CGACTACCAACACTGAAGCGA 60.336 52.381 0.00 0.00 0.00 4.93
2763 3763 2.329379 GACTACCAACACTGAAGCGAG 58.671 52.381 0.00 0.00 0.00 5.03
2764 3764 1.071605 CTACCAACACTGAAGCGAGC 58.928 55.000 0.00 0.00 0.00 5.03
2765 3765 0.320421 TACCAACACTGAAGCGAGCC 60.320 55.000 0.00 0.00 0.00 4.70
2766 3766 2.671177 CCAACACTGAAGCGAGCCG 61.671 63.158 0.00 0.00 0.00 5.52
2767 3767 1.664649 CAACACTGAAGCGAGCCGA 60.665 57.895 0.00 0.00 0.00 5.54
2768 3768 1.069090 AACACTGAAGCGAGCCGAA 59.931 52.632 0.00 0.00 0.00 4.30
2769 3769 0.946221 AACACTGAAGCGAGCCGAAG 60.946 55.000 0.00 0.00 0.00 3.79
2770 3770 1.080501 CACTGAAGCGAGCCGAAGA 60.081 57.895 0.00 0.00 0.00 2.87
2771 3771 1.080434 ACTGAAGCGAGCCGAAGAC 60.080 57.895 0.00 0.00 0.00 3.01
2772 3772 2.126463 TGAAGCGAGCCGAAGACG 60.126 61.111 0.00 0.00 39.43 4.18
2795 3795 4.888325 CCCTCATCGCCCCTCCCT 62.888 72.222 0.00 0.00 0.00 4.20
2796 3796 3.237741 CCTCATCGCCCCTCCCTC 61.238 72.222 0.00 0.00 0.00 4.30
2797 3797 3.610669 CTCATCGCCCCTCCCTCG 61.611 72.222 0.00 0.00 0.00 4.63
2804 3804 4.835891 CCCCTCCCTCGCCGTAGT 62.836 72.222 0.00 0.00 0.00 2.73
2805 3805 3.528370 CCCTCCCTCGCCGTAGTG 61.528 72.222 0.00 0.00 0.00 2.74
2831 3831 1.849977 AGGTTCTACTCCCTCCGTTC 58.150 55.000 0.00 0.00 0.00 3.95
2834 3834 2.950975 GGTTCTACTCCCTCCGTTCTAG 59.049 54.545 0.00 0.00 0.00 2.43
2846 3846 7.467650 TCCCTCCGTTCTAGAATATAAGATCA 58.532 38.462 8.75 0.00 0.00 2.92
2847 3847 8.116669 TCCCTCCGTTCTAGAATATAAGATCAT 58.883 37.037 8.75 0.00 0.00 2.45
2848 3848 8.754080 CCCTCCGTTCTAGAATATAAGATCATT 58.246 37.037 8.75 0.00 0.00 2.57
2849 3849 9.796120 CCTCCGTTCTAGAATATAAGATCATTC 57.204 37.037 8.75 0.00 0.00 2.67
2850 3850 9.796120 CTCCGTTCTAGAATATAAGATCATTCC 57.204 37.037 8.75 0.00 32.61 3.01
2851 3851 8.459635 TCCGTTCTAGAATATAAGATCATTCCG 58.540 37.037 8.75 2.18 32.61 4.30
2852 3852 7.702772 CCGTTCTAGAATATAAGATCATTCCGG 59.297 40.741 8.75 7.63 32.61 5.14
2853 3853 7.221067 CGTTCTAGAATATAAGATCATTCCGGC 59.779 40.741 8.75 0.00 32.61 6.13
2854 3854 7.718334 TCTAGAATATAAGATCATTCCGGCA 57.282 36.000 0.00 0.00 32.61 5.69
2855 3855 7.776107 TCTAGAATATAAGATCATTCCGGCAG 58.224 38.462 0.00 0.00 32.61 4.85
2856 3856 6.365970 AGAATATAAGATCATTCCGGCAGT 57.634 37.500 0.00 0.00 32.61 4.40
2857 3857 6.169094 AGAATATAAGATCATTCCGGCAGTG 58.831 40.000 0.00 0.00 32.61 3.66
2858 3858 1.953559 TAAGATCATTCCGGCAGTGC 58.046 50.000 6.55 6.55 0.00 4.40
2859 3859 1.091771 AAGATCATTCCGGCAGTGCG 61.092 55.000 9.45 4.48 0.00 5.34
2860 3860 1.815421 GATCATTCCGGCAGTGCGT 60.815 57.895 9.45 0.00 0.00 5.24
2861 3861 1.766143 GATCATTCCGGCAGTGCGTC 61.766 60.000 9.45 0.00 0.00 5.19
2862 3862 2.244117 ATCATTCCGGCAGTGCGTCT 62.244 55.000 9.45 0.00 0.00 4.18
2863 3863 1.153647 CATTCCGGCAGTGCGTCTA 60.154 57.895 9.45 0.00 0.00 2.59
2864 3864 1.141881 ATTCCGGCAGTGCGTCTAG 59.858 57.895 9.45 0.00 0.00 2.43
2876 3876 2.665777 CGTCTAGCATCGTTGGTGG 58.334 57.895 8.40 5.61 34.79 4.61
2877 3877 0.806102 CGTCTAGCATCGTTGGTGGG 60.806 60.000 8.40 2.07 34.79 4.61
2878 3878 0.249398 GTCTAGCATCGTTGGTGGGT 59.751 55.000 8.40 0.00 34.79 4.51
2879 3879 0.249120 TCTAGCATCGTTGGTGGGTG 59.751 55.000 8.40 0.00 34.79 4.61
2880 3880 0.036388 CTAGCATCGTTGGTGGGTGT 60.036 55.000 8.40 0.00 34.79 4.16
2881 3881 0.321210 TAGCATCGTTGGTGGGTGTG 60.321 55.000 8.40 0.00 34.79 3.82
2882 3882 1.896660 GCATCGTTGGTGGGTGTGT 60.897 57.895 0.00 0.00 0.00 3.72
2883 3883 1.948508 CATCGTTGGTGGGTGTGTG 59.051 57.895 0.00 0.00 0.00 3.82
2884 3884 1.228124 ATCGTTGGTGGGTGTGTGG 60.228 57.895 0.00 0.00 0.00 4.17
2885 3885 1.701031 ATCGTTGGTGGGTGTGTGGA 61.701 55.000 0.00 0.00 0.00 4.02
2886 3886 1.891919 CGTTGGTGGGTGTGTGGAG 60.892 63.158 0.00 0.00 0.00 3.86
2887 3887 1.528309 GTTGGTGGGTGTGTGGAGG 60.528 63.158 0.00 0.00 0.00 4.30
2888 3888 2.004120 TTGGTGGGTGTGTGGAGGT 61.004 57.895 0.00 0.00 0.00 3.85
2889 3889 2.113139 GGTGGGTGTGTGGAGGTG 59.887 66.667 0.00 0.00 0.00 4.00
2890 3890 2.752807 GGTGGGTGTGTGGAGGTGT 61.753 63.158 0.00 0.00 0.00 4.16
2891 3891 1.525995 GTGGGTGTGTGGAGGTGTG 60.526 63.158 0.00 0.00 0.00 3.82
2892 3892 1.998438 TGGGTGTGTGGAGGTGTGT 60.998 57.895 0.00 0.00 0.00 3.72
2893 3893 1.227853 GGGTGTGTGGAGGTGTGTC 60.228 63.158 0.00 0.00 0.00 3.67
2894 3894 1.696097 GGGTGTGTGGAGGTGTGTCT 61.696 60.000 0.00 0.00 0.00 3.41
2895 3895 0.249911 GGTGTGTGGAGGTGTGTCTC 60.250 60.000 0.00 0.00 0.00 3.36
2900 3900 3.311110 GGAGGTGTGTCTCCGGCA 61.311 66.667 0.00 0.00 43.19 5.69
2901 3901 2.262915 GAGGTGTGTCTCCGGCAG 59.737 66.667 0.00 0.00 0.00 4.85
2902 3902 2.203640 AGGTGTGTCTCCGGCAGA 60.204 61.111 0.00 0.00 0.00 4.26
2903 3903 1.608717 GAGGTGTGTCTCCGGCAGAT 61.609 60.000 0.00 0.00 32.08 2.90
2904 3904 1.153549 GGTGTGTCTCCGGCAGATC 60.154 63.158 0.00 0.04 32.08 2.75
2905 3905 1.608717 GGTGTGTCTCCGGCAGATCT 61.609 60.000 0.00 0.00 32.08 2.75
2906 3906 1.103803 GTGTGTCTCCGGCAGATCTA 58.896 55.000 0.00 0.00 32.08 1.98
2907 3907 1.683917 GTGTGTCTCCGGCAGATCTAT 59.316 52.381 0.00 0.00 32.08 1.98
2908 3908 1.957177 TGTGTCTCCGGCAGATCTATC 59.043 52.381 0.00 0.00 32.08 2.08
2909 3909 2.235016 GTGTCTCCGGCAGATCTATCT 58.765 52.381 0.00 0.00 37.72 1.98
2910 3910 2.625790 GTGTCTCCGGCAGATCTATCTT 59.374 50.000 0.00 0.00 34.22 2.40
2911 3911 3.068873 GTGTCTCCGGCAGATCTATCTTT 59.931 47.826 0.00 0.00 34.22 2.52
2912 3912 3.068732 TGTCTCCGGCAGATCTATCTTTG 59.931 47.826 0.00 0.00 34.22 2.77
2913 3913 2.630098 TCTCCGGCAGATCTATCTTTGG 59.370 50.000 0.00 0.00 34.22 3.28
2914 3914 2.366916 CTCCGGCAGATCTATCTTTGGT 59.633 50.000 0.00 0.00 34.22 3.67
2915 3915 2.103094 TCCGGCAGATCTATCTTTGGTG 59.897 50.000 0.00 0.00 34.22 4.17
2916 3916 2.487934 CGGCAGATCTATCTTTGGTGG 58.512 52.381 0.00 0.00 34.22 4.61
2917 3917 2.103094 CGGCAGATCTATCTTTGGTGGA 59.897 50.000 0.00 0.00 34.22 4.02
2918 3918 3.244353 CGGCAGATCTATCTTTGGTGGAT 60.244 47.826 0.00 0.00 34.22 3.41
2919 3919 4.723309 GGCAGATCTATCTTTGGTGGATT 58.277 43.478 0.00 0.00 34.22 3.01
2920 3920 5.136105 GGCAGATCTATCTTTGGTGGATTT 58.864 41.667 0.00 0.00 34.22 2.17
2921 3921 5.009410 GGCAGATCTATCTTTGGTGGATTTG 59.991 44.000 0.00 0.00 34.22 2.32
2922 3922 5.506982 GCAGATCTATCTTTGGTGGATTTGC 60.507 44.000 0.00 4.53 37.36 3.68
2923 3923 5.826737 CAGATCTATCTTTGGTGGATTTGCT 59.173 40.000 0.00 0.00 34.22 3.91
2924 3924 6.017275 CAGATCTATCTTTGGTGGATTTGCTC 60.017 42.308 0.00 0.00 34.22 4.26
2925 3925 4.191544 TCTATCTTTGGTGGATTTGCTCG 58.808 43.478 0.00 0.00 0.00 5.03
2926 3926 1.533625 TCTTTGGTGGATTTGCTCGG 58.466 50.000 0.00 0.00 0.00 4.63
2927 3927 1.073125 TCTTTGGTGGATTTGCTCGGA 59.927 47.619 0.00 0.00 0.00 4.55
2928 3928 2.094675 CTTTGGTGGATTTGCTCGGAT 58.905 47.619 0.00 0.00 0.00 4.18
2929 3929 1.750193 TTGGTGGATTTGCTCGGATC 58.250 50.000 0.00 0.00 0.00 3.36
2930 3930 0.911769 TGGTGGATTTGCTCGGATCT 59.088 50.000 0.00 0.00 0.00 2.75
2931 3931 1.281867 TGGTGGATTTGCTCGGATCTT 59.718 47.619 0.00 0.00 0.00 2.40
2932 3932 1.672881 GGTGGATTTGCTCGGATCTTG 59.327 52.381 0.00 0.00 0.00 3.02
2933 3933 2.359900 GTGGATTTGCTCGGATCTTGT 58.640 47.619 0.00 0.00 0.00 3.16
2934 3934 2.352960 GTGGATTTGCTCGGATCTTGTC 59.647 50.000 0.00 0.00 0.00 3.18
2935 3935 1.594862 GGATTTGCTCGGATCTTGTCG 59.405 52.381 0.00 0.00 0.00 4.35
2936 3936 2.271800 GATTTGCTCGGATCTTGTCGT 58.728 47.619 0.00 0.00 0.00 4.34
2937 3937 2.163818 TTTGCTCGGATCTTGTCGTT 57.836 45.000 0.00 0.00 0.00 3.85
2938 3938 3.306917 TTTGCTCGGATCTTGTCGTTA 57.693 42.857 0.00 0.00 0.00 3.18
2939 3939 3.520290 TTGCTCGGATCTTGTCGTTAT 57.480 42.857 0.00 0.00 0.00 1.89
2940 3940 3.520290 TGCTCGGATCTTGTCGTTATT 57.480 42.857 0.00 0.00 0.00 1.40
2941 3941 3.444916 TGCTCGGATCTTGTCGTTATTC 58.555 45.455 0.00 0.00 0.00 1.75
2942 3942 2.468040 GCTCGGATCTTGTCGTTATTCG 59.532 50.000 0.00 0.00 41.41 3.34
2943 3943 3.692576 CTCGGATCTTGTCGTTATTCGT 58.307 45.455 0.00 0.00 40.80 3.85
2944 3944 3.688272 TCGGATCTTGTCGTTATTCGTC 58.312 45.455 0.00 0.00 40.80 4.20
2945 3945 3.376234 TCGGATCTTGTCGTTATTCGTCT 59.624 43.478 0.00 0.00 40.80 4.18
2946 3946 4.571984 TCGGATCTTGTCGTTATTCGTCTA 59.428 41.667 0.00 0.00 40.80 2.59
2947 3947 4.669728 CGGATCTTGTCGTTATTCGTCTAC 59.330 45.833 0.00 0.00 40.80 2.59
2948 3948 4.669728 GGATCTTGTCGTTATTCGTCTACG 59.330 45.833 0.00 0.00 40.80 3.51
2949 3949 4.668576 TCTTGTCGTTATTCGTCTACGT 57.331 40.909 2.02 0.00 40.80 3.57
2950 3950 5.034554 TCTTGTCGTTATTCGTCTACGTT 57.965 39.130 0.00 0.00 40.80 3.99
2951 3951 5.082059 TCTTGTCGTTATTCGTCTACGTTC 58.918 41.667 0.00 0.00 40.80 3.95
2952 3952 3.407252 TGTCGTTATTCGTCTACGTTCG 58.593 45.455 0.00 0.00 40.80 3.95
2953 3953 3.120683 TGTCGTTATTCGTCTACGTTCGT 60.121 43.478 0.00 2.91 40.80 3.85
2954 3954 3.233838 GTCGTTATTCGTCTACGTTCGTG 59.766 47.826 8.14 0.00 40.80 4.35
2955 3955 3.120683 TCGTTATTCGTCTACGTTCGTGT 60.121 43.478 8.14 0.00 40.80 4.49
2956 3956 3.003696 CGTTATTCGTCTACGTTCGTGTG 60.004 47.826 8.14 1.60 40.80 3.82
2957 3957 2.693797 ATTCGTCTACGTTCGTGTGT 57.306 45.000 8.14 0.00 40.80 3.72
2958 3958 2.022808 TTCGTCTACGTTCGTGTGTC 57.977 50.000 8.14 0.00 40.80 3.67
2959 3959 1.220529 TCGTCTACGTTCGTGTGTCT 58.779 50.000 8.14 0.00 40.80 3.41
2960 3960 1.599071 TCGTCTACGTTCGTGTGTCTT 59.401 47.619 8.14 0.00 40.80 3.01
2961 3961 1.967908 CGTCTACGTTCGTGTGTCTTC 59.032 52.381 8.14 0.00 34.11 2.87
2962 3962 1.967908 GTCTACGTTCGTGTGTCTTCG 59.032 52.381 8.14 0.00 0.00 3.79
2963 3963 1.069703 TCTACGTTCGTGTGTCTTCGG 60.070 52.381 8.14 0.00 0.00 4.30
2964 3964 0.662619 TACGTTCGTGTGTCTTCGGT 59.337 50.000 8.14 0.00 0.00 4.69
2965 3965 0.179129 ACGTTCGTGTGTCTTCGGTT 60.179 50.000 0.00 0.00 0.00 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 3.181329 TCTGAGTCTAATTTCCCCTGCA 58.819 45.455 0.00 0.00 0.00 4.41
42 43 7.625682 AGTTCTTATCTGAGTCTAATTTCCCCT 59.374 37.037 0.00 0.00 0.00 4.79
104 105 6.072508 GCAATACATTGTCTTCCTCAACTTCA 60.073 38.462 0.00 0.00 39.88 3.02
114 115 3.445096 AGCAAGGGCAATACATTGTCTTC 59.555 43.478 6.51 4.92 41.86 2.87
152 153 3.665745 ACAAAACCATGAAGCACCATC 57.334 42.857 0.00 0.00 0.00 3.51
187 188 5.336372 GCTAATACAAAACCATGAAGCACCA 60.336 40.000 0.00 0.00 0.00 4.17
191 192 7.762382 AGTTAGCTAATACAAAACCATGAAGC 58.238 34.615 9.88 0.00 0.00 3.86
203 204 9.830975 TGAAGCATCATTAAGTTAGCTAATACA 57.169 29.630 9.88 0.00 0.00 2.29
232 233 7.862372 AGACACACACATCAAATACAATTCAAC 59.138 33.333 0.00 0.00 0.00 3.18
317 319 7.436933 CCAAACTAAAGAAGAGCCTGATTTTT 58.563 34.615 0.00 0.00 0.00 1.94
318 320 6.517362 GCCAAACTAAAGAAGAGCCTGATTTT 60.517 38.462 0.00 0.00 0.00 1.82
321 323 4.013050 GCCAAACTAAAGAAGAGCCTGAT 58.987 43.478 0.00 0.00 0.00 2.90
342 344 0.752658 AAAGAAACTGTTGGGCTGGC 59.247 50.000 0.00 0.00 0.00 4.85
345 347 2.101415 GCTTGAAAGAAACTGTTGGGCT 59.899 45.455 0.00 0.00 0.00 5.19
347 349 3.243535 GGAGCTTGAAAGAAACTGTTGGG 60.244 47.826 0.00 0.00 0.00 4.12
350 352 3.971032 CGGAGCTTGAAAGAAACTGTT 57.029 42.857 0.00 0.00 0.00 3.16
368 370 2.049248 GGTTGTGTGCAATGGCGG 60.049 61.111 0.00 0.00 45.35 6.13
380 382 2.841160 GCCCTTCGCGTTTGGTTGT 61.841 57.895 5.77 0.00 0.00 3.32
392 394 2.423538 ACGATGCACTAATTTGCCCTTC 59.576 45.455 0.00 0.00 42.25 3.46
393 395 2.164219 CACGATGCACTAATTTGCCCTT 59.836 45.455 0.00 0.00 42.25 3.95
395 397 1.202290 CCACGATGCACTAATTTGCCC 60.202 52.381 0.00 0.00 42.25 5.36
412 414 2.832129 TCCGCATATTATCTCCCTCCAC 59.168 50.000 0.00 0.00 0.00 4.02
431 433 1.463444 GTGCACATAGTTCGGTTGTCC 59.537 52.381 13.17 0.00 0.00 4.02
453 455 2.094182 AGATGCAAGCTGAAAAGCATGG 60.094 45.455 13.30 0.00 46.71 3.66
465 467 8.491331 TTTTCCCATAATTTTAAGATGCAAGC 57.509 30.769 0.00 0.00 0.00 4.01
493 495 9.589461 ACTCCCTCTATCTCGAAATTTAAGATA 57.411 33.333 16.31 16.31 32.25 1.98
500 502 3.070302 GCCACTCCCTCTATCTCGAAATT 59.930 47.826 0.00 0.00 0.00 1.82
513 515 2.603075 TAAGCAAATTGCCACTCCCT 57.397 45.000 15.04 0.00 46.52 4.20
514 516 3.676291 TTTAAGCAAATTGCCACTCCC 57.324 42.857 15.04 0.00 46.52 4.30
667 670 2.713863 AAACGTACTGAAACCACCCA 57.286 45.000 0.00 0.00 0.00 4.51
697 700 6.090088 CACTAATGCAGTCACTTACTCACTTC 59.910 42.308 0.00 0.00 35.76 3.01
715 718 1.154488 AAACGCGTGCGCACTAATG 60.154 52.632 35.27 23.68 44.19 1.90
724 727 2.235238 TGCTTAATACAAACGCGTGC 57.765 45.000 14.98 9.24 0.00 5.34
741 744 4.750098 TGACTTACTCACTTGCTTAGTTGC 59.250 41.667 0.00 0.00 33.85 4.17
789 792 3.611766 GCCAGCCAACTAGTTGCTTTAAC 60.612 47.826 27.05 12.18 39.16 2.01
900 915 2.830370 GGGAAGCAAGCGGGGATG 60.830 66.667 0.00 0.00 0.00 3.51
990 1019 2.644299 TCTCTTGGCCATTTGGAGAAGA 59.356 45.455 6.09 2.21 37.39 2.87
995 1027 2.158325 AGGTTTCTCTTGGCCATTTGGA 60.158 45.455 6.09 1.94 37.39 3.53
1014 1046 2.445654 GCCAGGAGGAGGAGGAGG 60.446 72.222 0.00 0.00 36.89 4.30
1015 1047 2.837291 CGCCAGGAGGAGGAGGAG 60.837 72.222 0.00 0.00 36.89 3.69
1111 1143 0.896940 TACGTGAGGAGGTTCGGCTT 60.897 55.000 0.00 0.00 0.00 4.35
1215 1247 0.105913 GGGAGAGGAGGAAGTCGGAT 60.106 60.000 0.00 0.00 0.00 4.18
1893 1934 2.992689 TACTTCCTCCCGTGCGCA 60.993 61.111 5.66 5.66 0.00 6.09
1998 2039 0.175760 GCTAGCGGATTGGACTGACA 59.824 55.000 0.00 0.00 0.00 3.58
2001 2042 1.156645 GCAGCTAGCGGATTGGACTG 61.157 60.000 19.63 4.75 0.00 3.51
2166 3156 7.495279 ACGACACAAACAAAATTACCACTAGTA 59.505 33.333 0.00 0.00 0.00 1.82
2196 3186 2.760159 GCTACCGCACCGTACCGTA 61.760 63.158 0.00 0.00 35.78 4.02
2197 3187 4.120331 GCTACCGCACCGTACCGT 62.120 66.667 0.00 0.00 35.78 4.83
2199 3189 4.860261 CCGCTACCGCACCGTACC 62.860 72.222 0.00 0.00 35.30 3.34
2211 3201 2.027073 CGTTCACTTGCTGCCGCTA 61.027 57.895 0.70 0.00 36.97 4.26
2222 3212 6.090898 CCAAGTTCGAGATTAATTCGTTCACT 59.909 38.462 15.04 13.07 39.05 3.41
2404 3395 1.126113 CGTCACCATAGAAACGTGTGC 59.874 52.381 0.00 0.00 0.00 4.57
2435 3426 1.394227 GAGAGTACTCTCGGTCACACG 59.606 57.143 31.62 0.00 45.49 4.49
2499 3496 9.558133 TGATTTCCTGGATATCATCTCTAGATT 57.442 33.333 21.28 0.00 31.21 2.40
2500 3497 9.558133 TTGATTTCCTGGATATCATCTCTAGAT 57.442 33.333 24.31 0.00 32.09 1.98
2501 3498 8.962912 TTGATTTCCTGGATATCATCTCTAGA 57.037 34.615 24.31 9.92 32.09 2.43
2502 3499 8.259411 CCTTGATTTCCTGGATATCATCTCTAG 58.741 40.741 24.31 18.73 32.09 2.43
2503 3500 7.310921 GCCTTGATTTCCTGGATATCATCTCTA 60.311 40.741 24.31 12.33 32.09 2.43
2504 3501 6.522114 GCCTTGATTTCCTGGATATCATCTCT 60.522 42.308 24.31 0.00 32.09 3.10
2505 3502 5.647225 GCCTTGATTTCCTGGATATCATCTC 59.353 44.000 24.31 14.80 32.09 2.75
2506 3503 5.568392 GCCTTGATTTCCTGGATATCATCT 58.432 41.667 24.31 0.00 32.09 2.90
2507 3504 4.394300 CGCCTTGATTTCCTGGATATCATC 59.606 45.833 24.31 16.87 32.09 2.92
2508 3505 4.330250 CGCCTTGATTTCCTGGATATCAT 58.670 43.478 24.31 4.65 32.09 2.45
2509 3506 3.743521 CGCCTTGATTTCCTGGATATCA 58.256 45.455 21.28 21.28 30.55 2.15
2510 3507 2.485814 GCGCCTTGATTTCCTGGATATC 59.514 50.000 17.21 17.21 0.00 1.63
2511 3508 2.107204 AGCGCCTTGATTTCCTGGATAT 59.893 45.455 2.29 0.00 0.00 1.63
2512 3509 1.490490 AGCGCCTTGATTTCCTGGATA 59.510 47.619 2.29 0.00 0.00 2.59
2513 3510 0.257039 AGCGCCTTGATTTCCTGGAT 59.743 50.000 2.29 0.00 0.00 3.41
2514 3511 0.677731 CAGCGCCTTGATTTCCTGGA 60.678 55.000 2.29 0.00 0.00 3.86
2515 3512 0.962356 ACAGCGCCTTGATTTCCTGG 60.962 55.000 2.29 0.00 0.00 4.45
2516 3513 1.667724 CTACAGCGCCTTGATTTCCTG 59.332 52.381 2.29 0.00 0.00 3.86
2517 3514 1.407437 CCTACAGCGCCTTGATTTCCT 60.407 52.381 2.29 0.00 0.00 3.36
2518 3515 1.017387 CCTACAGCGCCTTGATTTCC 58.983 55.000 2.29 0.00 0.00 3.13
2519 3516 1.936547 CTCCTACAGCGCCTTGATTTC 59.063 52.381 2.29 0.00 0.00 2.17
2520 3517 1.555075 TCTCCTACAGCGCCTTGATTT 59.445 47.619 2.29 0.00 0.00 2.17
2521 3518 1.195115 TCTCCTACAGCGCCTTGATT 58.805 50.000 2.29 0.00 0.00 2.57
2522 3519 1.134670 GTTCTCCTACAGCGCCTTGAT 60.135 52.381 2.29 0.00 0.00 2.57
2523 3520 0.246635 GTTCTCCTACAGCGCCTTGA 59.753 55.000 2.29 0.00 0.00 3.02
2524 3521 1.078759 CGTTCTCCTACAGCGCCTTG 61.079 60.000 2.29 0.00 0.00 3.61
2525 3522 1.215647 CGTTCTCCTACAGCGCCTT 59.784 57.895 2.29 0.00 0.00 4.35
2526 3523 1.038130 ATCGTTCTCCTACAGCGCCT 61.038 55.000 2.29 0.00 0.00 5.52
2527 3524 0.666913 TATCGTTCTCCTACAGCGCC 59.333 55.000 2.29 0.00 0.00 6.53
2528 3525 1.926827 GCTATCGTTCTCCTACAGCGC 60.927 57.143 0.00 0.00 0.00 5.92
2529 3526 1.660614 CGCTATCGTTCTCCTACAGCG 60.661 57.143 0.00 0.00 43.47 5.18
2530 3527 1.602851 TCGCTATCGTTCTCCTACAGC 59.397 52.381 0.00 0.00 36.96 4.40
2531 3528 2.224549 CCTCGCTATCGTTCTCCTACAG 59.775 54.545 0.00 0.00 36.96 2.74
2532 3529 2.219458 CCTCGCTATCGTTCTCCTACA 58.781 52.381 0.00 0.00 36.96 2.74
2533 3530 2.220313 ACCTCGCTATCGTTCTCCTAC 58.780 52.381 0.00 0.00 36.96 3.18
2534 3531 2.634815 ACCTCGCTATCGTTCTCCTA 57.365 50.000 0.00 0.00 36.96 2.94
2535 3532 1.765230 AACCTCGCTATCGTTCTCCT 58.235 50.000 0.00 0.00 36.96 3.69
2536 3533 3.919223 ATAACCTCGCTATCGTTCTCC 57.081 47.619 0.00 0.00 36.96 3.71
2537 3534 4.608951 ACAATAACCTCGCTATCGTTCTC 58.391 43.478 0.00 0.00 36.96 2.87
2538 3535 4.097437 TGACAATAACCTCGCTATCGTTCT 59.903 41.667 0.00 0.00 36.96 3.01
2539 3536 4.357142 TGACAATAACCTCGCTATCGTTC 58.643 43.478 0.00 0.00 36.96 3.95
2540 3537 4.380841 TGACAATAACCTCGCTATCGTT 57.619 40.909 0.00 0.00 36.96 3.85
2541 3538 4.360563 CTTGACAATAACCTCGCTATCGT 58.639 43.478 0.00 0.00 36.96 3.73
2542 3539 3.182572 GCTTGACAATAACCTCGCTATCG 59.817 47.826 0.00 0.00 0.00 2.92
2543 3540 4.372656 AGCTTGACAATAACCTCGCTATC 58.627 43.478 0.00 0.00 0.00 2.08
2544 3541 4.408182 AGCTTGACAATAACCTCGCTAT 57.592 40.909 0.00 0.00 0.00 2.97
2548 3545 4.209288 CCGATAAGCTTGACAATAACCTCG 59.791 45.833 9.86 0.00 0.00 4.63
2570 3570 1.401905 CTCTCTATTTTGGTTGCGGCC 59.598 52.381 0.00 0.00 0.00 6.13
2578 3578 4.162040 AGGGCATCACTCTCTATTTTGG 57.838 45.455 0.00 0.00 0.00 3.28
2579 3579 4.201990 GCAAGGGCATCACTCTCTATTTTG 60.202 45.833 0.00 0.00 40.72 2.44
2587 3587 0.323178 CCAAGCAAGGGCATCACTCT 60.323 55.000 0.00 0.00 44.61 3.24
2640 3640 6.693315 AGATCTGACAGTTTTTCGGAAAAA 57.307 33.333 21.31 21.31 36.56 1.94
2641 3641 7.979444 ATAGATCTGACAGTTTTTCGGAAAA 57.021 32.000 11.68 11.68 32.07 2.29
2642 3642 7.659799 TGAATAGATCTGACAGTTTTTCGGAAA 59.340 33.333 5.18 0.00 32.07 3.13
2643 3643 7.158697 TGAATAGATCTGACAGTTTTTCGGAA 58.841 34.615 5.18 0.00 32.07 4.30
2644 3644 6.697395 TGAATAGATCTGACAGTTTTTCGGA 58.303 36.000 5.18 0.00 32.85 4.55
2645 3645 6.968131 TGAATAGATCTGACAGTTTTTCGG 57.032 37.500 5.18 0.00 0.00 4.30
2646 3646 8.417780 AGATGAATAGATCTGACAGTTTTTCG 57.582 34.615 5.18 0.00 31.14 3.46
2648 3648 9.730705 TGAAGATGAATAGATCTGACAGTTTTT 57.269 29.630 5.18 0.00 32.77 1.94
2649 3649 9.730705 TTGAAGATGAATAGATCTGACAGTTTT 57.269 29.630 5.18 0.00 32.77 2.43
2650 3650 9.902684 ATTGAAGATGAATAGATCTGACAGTTT 57.097 29.630 5.18 2.19 32.77 2.66
2651 3651 9.545105 GATTGAAGATGAATAGATCTGACAGTT 57.455 33.333 5.18 0.00 32.77 3.16
2652 3652 8.702819 TGATTGAAGATGAATAGATCTGACAGT 58.297 33.333 5.18 0.00 32.77 3.55
2653 3653 9.713713 ATGATTGAAGATGAATAGATCTGACAG 57.286 33.333 5.18 0.00 32.77 3.51
2654 3654 9.490379 CATGATTGAAGATGAATAGATCTGACA 57.510 33.333 5.18 3.20 32.77 3.58
2655 3655 8.937884 CCATGATTGAAGATGAATAGATCTGAC 58.062 37.037 5.18 0.00 32.77 3.51
2656 3656 7.606839 GCCATGATTGAAGATGAATAGATCTGA 59.393 37.037 5.18 0.00 32.77 3.27
2657 3657 7.390718 TGCCATGATTGAAGATGAATAGATCTG 59.609 37.037 5.18 0.00 32.77 2.90
2658 3658 7.459234 TGCCATGATTGAAGATGAATAGATCT 58.541 34.615 0.00 0.00 33.91 2.75
2659 3659 7.390996 ACTGCCATGATTGAAGATGAATAGATC 59.609 37.037 0.00 0.00 0.00 2.75
2660 3660 7.232188 ACTGCCATGATTGAAGATGAATAGAT 58.768 34.615 0.00 0.00 0.00 1.98
2661 3661 6.598503 ACTGCCATGATTGAAGATGAATAGA 58.401 36.000 0.00 0.00 0.00 1.98
2662 3662 6.879276 ACTGCCATGATTGAAGATGAATAG 57.121 37.500 0.00 0.00 0.00 1.73
2663 3663 6.424812 CGTACTGCCATGATTGAAGATGAATA 59.575 38.462 0.00 0.00 0.00 1.75
2664 3664 5.237996 CGTACTGCCATGATTGAAGATGAAT 59.762 40.000 0.00 0.00 0.00 2.57
2665 3665 4.571984 CGTACTGCCATGATTGAAGATGAA 59.428 41.667 0.00 0.00 0.00 2.57
2666 3666 4.122046 CGTACTGCCATGATTGAAGATGA 58.878 43.478 0.00 0.00 0.00 2.92
2667 3667 4.025396 GTCGTACTGCCATGATTGAAGATG 60.025 45.833 0.00 0.00 0.00 2.90
2668 3668 4.122776 GTCGTACTGCCATGATTGAAGAT 58.877 43.478 0.00 0.00 0.00 2.40
2669 3669 3.521560 GTCGTACTGCCATGATTGAAGA 58.478 45.455 0.00 0.00 0.00 2.87
2670 3670 2.282555 CGTCGTACTGCCATGATTGAAG 59.717 50.000 0.00 0.00 0.00 3.02
2671 3671 2.094442 TCGTCGTACTGCCATGATTGAA 60.094 45.455 0.00 0.00 0.00 2.69
2672 3672 1.474879 TCGTCGTACTGCCATGATTGA 59.525 47.619 0.00 0.00 0.00 2.57
2673 3673 1.921243 TCGTCGTACTGCCATGATTG 58.079 50.000 0.00 0.00 0.00 2.67
2674 3674 2.268298 GTTCGTCGTACTGCCATGATT 58.732 47.619 0.00 0.00 0.00 2.57
2675 3675 1.203758 TGTTCGTCGTACTGCCATGAT 59.796 47.619 3.61 0.00 0.00 2.45
2676 3676 0.599060 TGTTCGTCGTACTGCCATGA 59.401 50.000 3.61 0.00 0.00 3.07
2677 3677 0.713883 GTGTTCGTCGTACTGCCATG 59.286 55.000 3.61 0.00 0.00 3.66
2678 3678 0.389426 GGTGTTCGTCGTACTGCCAT 60.389 55.000 3.61 0.00 0.00 4.40
2679 3679 1.007038 GGTGTTCGTCGTACTGCCA 60.007 57.895 3.61 0.00 0.00 4.92
2680 3680 0.598158 TTGGTGTTCGTCGTACTGCC 60.598 55.000 3.61 6.44 0.00 4.85
2681 3681 1.210870 TTTGGTGTTCGTCGTACTGC 58.789 50.000 3.61 0.00 0.00 4.40
2682 3682 3.929417 TTTTTGGTGTTCGTCGTACTG 57.071 42.857 3.61 0.00 0.00 2.74
2683 3683 6.790285 ATTATTTTTGGTGTTCGTCGTACT 57.210 33.333 3.61 0.00 0.00 2.73
2684 3684 8.931905 TTTATTATTTTTGGTGTTCGTCGTAC 57.068 30.769 0.00 0.00 0.00 3.67
2685 3685 9.941664 TTTTTATTATTTTTGGTGTTCGTCGTA 57.058 25.926 0.00 0.00 0.00 3.43
2686 3686 8.853469 TTTTTATTATTTTTGGTGTTCGTCGT 57.147 26.923 0.00 0.00 0.00 4.34
2687 3687 9.720569 CATTTTTATTATTTTTGGTGTTCGTCG 57.279 29.630 0.00 0.00 0.00 5.12
2693 3693 9.278978 GGGTGTCATTTTTATTATTTTTGGTGT 57.721 29.630 0.00 0.00 0.00 4.16
2694 3694 9.277783 TGGGTGTCATTTTTATTATTTTTGGTG 57.722 29.630 0.00 0.00 0.00 4.17
2695 3695 9.500785 CTGGGTGTCATTTTTATTATTTTTGGT 57.499 29.630 0.00 0.00 0.00 3.67
2696 3696 9.717942 TCTGGGTGTCATTTTTATTATTTTTGG 57.282 29.630 0.00 0.00 0.00 3.28
2704 3704 9.699410 TCTATGAATCTGGGTGTCATTTTTATT 57.301 29.630 0.00 0.00 34.01 1.40
2705 3705 9.872684 ATCTATGAATCTGGGTGTCATTTTTAT 57.127 29.630 0.00 0.00 34.01 1.40
2706 3706 9.342308 GATCTATGAATCTGGGTGTCATTTTTA 57.658 33.333 0.00 0.00 34.01 1.52
2707 3707 7.012704 CGATCTATGAATCTGGGTGTCATTTTT 59.987 37.037 0.00 0.00 34.01 1.94
2708 3708 6.484643 CGATCTATGAATCTGGGTGTCATTTT 59.515 38.462 0.00 0.00 34.01 1.82
2709 3709 5.994054 CGATCTATGAATCTGGGTGTCATTT 59.006 40.000 0.00 0.00 34.01 2.32
2710 3710 5.545588 CGATCTATGAATCTGGGTGTCATT 58.454 41.667 0.00 0.00 34.01 2.57
2711 3711 4.562347 GCGATCTATGAATCTGGGTGTCAT 60.562 45.833 0.00 0.00 36.08 3.06
2712 3712 3.243873 GCGATCTATGAATCTGGGTGTCA 60.244 47.826 0.00 0.00 0.00 3.58
2713 3713 3.321497 GCGATCTATGAATCTGGGTGTC 58.679 50.000 0.00 0.00 0.00 3.67
2714 3714 2.037772 GGCGATCTATGAATCTGGGTGT 59.962 50.000 0.00 0.00 0.00 4.16
2715 3715 2.301296 AGGCGATCTATGAATCTGGGTG 59.699 50.000 0.00 0.00 0.00 4.61
2716 3716 2.614259 AGGCGATCTATGAATCTGGGT 58.386 47.619 0.00 0.00 0.00 4.51
2717 3717 3.430098 GCTAGGCGATCTATGAATCTGGG 60.430 52.174 0.00 0.00 0.00 4.45
2718 3718 3.779759 GCTAGGCGATCTATGAATCTGG 58.220 50.000 0.00 0.00 0.00 3.86
2733 3733 0.525029 GTTGGTAGTCGTCGCTAGGC 60.525 60.000 0.00 0.00 0.00 3.93
2734 3734 0.806868 TGTTGGTAGTCGTCGCTAGG 59.193 55.000 0.00 0.00 0.00 3.02
2735 3735 1.467734 AGTGTTGGTAGTCGTCGCTAG 59.532 52.381 0.00 0.00 0.00 3.42
2736 3736 1.198408 CAGTGTTGGTAGTCGTCGCTA 59.802 52.381 0.00 0.00 0.00 4.26
2737 3737 0.039437 CAGTGTTGGTAGTCGTCGCT 60.039 55.000 0.00 0.00 0.00 4.93
2738 3738 0.039798 TCAGTGTTGGTAGTCGTCGC 60.040 55.000 0.00 0.00 0.00 5.19
2739 3739 2.316792 CTTCAGTGTTGGTAGTCGTCG 58.683 52.381 0.00 0.00 0.00 5.12
2740 3740 2.059541 GCTTCAGTGTTGGTAGTCGTC 58.940 52.381 0.00 0.00 0.00 4.20
2741 3741 1.602165 CGCTTCAGTGTTGGTAGTCGT 60.602 52.381 0.00 0.00 0.00 4.34
2742 3742 1.060713 CGCTTCAGTGTTGGTAGTCG 58.939 55.000 0.00 0.00 0.00 4.18
2743 3743 2.329379 CTCGCTTCAGTGTTGGTAGTC 58.671 52.381 0.00 0.00 0.00 2.59
2744 3744 1.605712 GCTCGCTTCAGTGTTGGTAGT 60.606 52.381 0.00 0.00 0.00 2.73
2745 3745 1.071605 GCTCGCTTCAGTGTTGGTAG 58.928 55.000 0.00 0.00 0.00 3.18
2746 3746 0.320421 GGCTCGCTTCAGTGTTGGTA 60.320 55.000 0.00 0.00 0.00 3.25
2747 3747 1.598130 GGCTCGCTTCAGTGTTGGT 60.598 57.895 0.00 0.00 0.00 3.67
2748 3748 2.671177 CGGCTCGCTTCAGTGTTGG 61.671 63.158 0.00 0.00 0.00 3.77
2749 3749 1.221466 TTCGGCTCGCTTCAGTGTTG 61.221 55.000 0.00 0.00 0.00 3.33
2750 3750 0.946221 CTTCGGCTCGCTTCAGTGTT 60.946 55.000 0.00 0.00 0.00 3.32
2751 3751 1.373497 CTTCGGCTCGCTTCAGTGT 60.373 57.895 0.00 0.00 0.00 3.55
2752 3752 1.080501 TCTTCGGCTCGCTTCAGTG 60.081 57.895 0.00 0.00 0.00 3.66
2753 3753 1.080434 GTCTTCGGCTCGCTTCAGT 60.080 57.895 0.00 0.00 0.00 3.41
2754 3754 2.155194 CGTCTTCGGCTCGCTTCAG 61.155 63.158 0.00 0.00 0.00 3.02
2755 3755 2.126463 CGTCTTCGGCTCGCTTCA 60.126 61.111 0.00 0.00 0.00 3.02
2756 3756 3.546397 GCGTCTTCGGCTCGCTTC 61.546 66.667 0.00 0.00 45.29 3.86
2778 3778 4.888325 AGGGAGGGGCGATGAGGG 62.888 72.222 0.00 0.00 0.00 4.30
2779 3779 3.237741 GAGGGAGGGGCGATGAGG 61.238 72.222 0.00 0.00 0.00 3.86
2780 3780 3.610669 CGAGGGAGGGGCGATGAG 61.611 72.222 0.00 0.00 0.00 2.90
2787 3787 4.835891 ACTACGGCGAGGGAGGGG 62.836 72.222 16.62 0.00 0.00 4.79
2788 3788 3.528370 CACTACGGCGAGGGAGGG 61.528 72.222 16.62 1.92 0.00 4.30
2789 3789 2.754658 ACACTACGGCGAGGGAGG 60.755 66.667 16.62 0.00 0.00 4.30
2790 3790 2.490217 CACACTACGGCGAGGGAG 59.510 66.667 16.62 7.63 0.00 4.30
2791 3791 3.066190 CCACACTACGGCGAGGGA 61.066 66.667 16.62 0.00 0.00 4.20
2792 3792 2.444700 AAACCACACTACGGCGAGGG 62.445 60.000 16.62 10.67 0.00 4.30
2793 3793 0.244450 TAAACCACACTACGGCGAGG 59.756 55.000 16.62 8.21 0.00 4.63
2794 3794 1.625616 CTAAACCACACTACGGCGAG 58.374 55.000 16.62 9.48 0.00 5.03
2795 3795 0.244450 CCTAAACCACACTACGGCGA 59.756 55.000 16.62 0.00 0.00 5.54
2796 3796 0.037975 ACCTAAACCACACTACGGCG 60.038 55.000 4.80 4.80 0.00 6.46
2797 3797 2.071540 GAACCTAAACCACACTACGGC 58.928 52.381 0.00 0.00 0.00 5.68
2798 3798 3.672767 AGAACCTAAACCACACTACGG 57.327 47.619 0.00 0.00 0.00 4.02
2799 3799 5.382618 AGTAGAACCTAAACCACACTACG 57.617 43.478 0.00 0.00 35.44 3.51
2800 3800 5.337089 GGGAGTAGAACCTAAACCACACTAC 60.337 48.000 0.00 0.00 0.00 2.73
2801 3801 4.774200 GGGAGTAGAACCTAAACCACACTA 59.226 45.833 0.00 0.00 0.00 2.74
2802 3802 3.581770 GGGAGTAGAACCTAAACCACACT 59.418 47.826 0.00 0.00 0.00 3.55
2803 3803 3.581770 AGGGAGTAGAACCTAAACCACAC 59.418 47.826 0.00 0.00 34.71 3.82
2804 3804 3.836562 GAGGGAGTAGAACCTAAACCACA 59.163 47.826 0.00 0.00 37.18 4.17
2805 3805 3.197333 GGAGGGAGTAGAACCTAAACCAC 59.803 52.174 0.00 0.00 37.18 4.16
2831 3831 7.490725 CACTGCCGGAATGATCTTATATTCTAG 59.509 40.741 5.05 0.00 34.52 2.43
2834 3834 5.163814 GCACTGCCGGAATGATCTTATATTC 60.164 44.000 5.05 0.00 33.58 1.75
2846 3846 1.141881 CTAGACGCACTGCCGGAAT 59.858 57.895 5.05 0.00 0.00 3.01
2847 3847 2.571757 CTAGACGCACTGCCGGAA 59.428 61.111 5.05 0.00 0.00 4.30
2848 3848 4.129737 GCTAGACGCACTGCCGGA 62.130 66.667 5.05 0.00 38.92 5.14
2849 3849 4.435436 TGCTAGACGCACTGCCGG 62.435 66.667 0.00 0.00 45.47 6.13
2857 3857 1.421410 CCACCAACGATGCTAGACGC 61.421 60.000 0.00 0.00 39.77 5.19
2858 3858 0.806102 CCCACCAACGATGCTAGACG 60.806 60.000 0.00 0.00 0.00 4.18
2859 3859 0.249398 ACCCACCAACGATGCTAGAC 59.751 55.000 0.00 0.00 0.00 2.59
2860 3860 0.249120 CACCCACCAACGATGCTAGA 59.751 55.000 0.00 0.00 0.00 2.43
2861 3861 0.036388 ACACCCACCAACGATGCTAG 60.036 55.000 0.00 0.00 0.00 3.42
2862 3862 0.321210 CACACCCACCAACGATGCTA 60.321 55.000 0.00 0.00 0.00 3.49
2863 3863 1.600636 CACACCCACCAACGATGCT 60.601 57.895 0.00 0.00 0.00 3.79
2864 3864 1.896660 ACACACCCACCAACGATGC 60.897 57.895 0.00 0.00 0.00 3.91
2865 3865 1.514678 CCACACACCCACCAACGATG 61.515 60.000 0.00 0.00 0.00 3.84
2866 3866 1.228124 CCACACACCCACCAACGAT 60.228 57.895 0.00 0.00 0.00 3.73
2867 3867 2.190843 CCACACACCCACCAACGA 59.809 61.111 0.00 0.00 0.00 3.85
2868 3868 1.891919 CTCCACACACCCACCAACG 60.892 63.158 0.00 0.00 0.00 4.10
2869 3869 1.528309 CCTCCACACACCCACCAAC 60.528 63.158 0.00 0.00 0.00 3.77
2870 3870 2.004120 ACCTCCACACACCCACCAA 61.004 57.895 0.00 0.00 0.00 3.67
2871 3871 2.367648 ACCTCCACACACCCACCA 60.368 61.111 0.00 0.00 0.00 4.17
2872 3872 2.113139 CACCTCCACACACCCACC 59.887 66.667 0.00 0.00 0.00 4.61
2873 3873 1.525995 CACACCTCCACACACCCAC 60.526 63.158 0.00 0.00 0.00 4.61
2874 3874 1.978455 GACACACCTCCACACACCCA 61.978 60.000 0.00 0.00 0.00 4.51
2875 3875 1.227853 GACACACCTCCACACACCC 60.228 63.158 0.00 0.00 0.00 4.61
2876 3876 0.249911 GAGACACACCTCCACACACC 60.250 60.000 0.00 0.00 0.00 4.16
2877 3877 3.290776 GAGACACACCTCCACACAC 57.709 57.895 0.00 0.00 0.00 3.82
2884 3884 1.608717 ATCTGCCGGAGACACACCTC 61.609 60.000 5.05 0.00 31.75 3.85
2885 3885 1.608717 GATCTGCCGGAGACACACCT 61.609 60.000 5.05 0.00 31.75 4.00
2886 3886 1.153549 GATCTGCCGGAGACACACC 60.154 63.158 5.05 0.00 31.75 4.16
2887 3887 1.103803 TAGATCTGCCGGAGACACAC 58.896 55.000 5.05 0.00 31.75 3.82
2888 3888 1.957177 GATAGATCTGCCGGAGACACA 59.043 52.381 5.05 0.00 31.75 3.72
2889 3889 2.235016 AGATAGATCTGCCGGAGACAC 58.765 52.381 5.05 3.97 35.42 3.67
2890 3890 2.666272 AGATAGATCTGCCGGAGACA 57.334 50.000 5.05 0.00 35.42 3.41
2891 3891 3.553922 CCAAAGATAGATCTGCCGGAGAC 60.554 52.174 5.05 0.97 37.19 3.36
2892 3892 2.630098 CCAAAGATAGATCTGCCGGAGA 59.370 50.000 5.05 5.76 37.19 3.71
2893 3893 2.366916 ACCAAAGATAGATCTGCCGGAG 59.633 50.000 5.05 0.00 37.19 4.63
2894 3894 2.103094 CACCAAAGATAGATCTGCCGGA 59.897 50.000 5.05 0.00 37.19 5.14
2895 3895 2.487934 CACCAAAGATAGATCTGCCGG 58.512 52.381 5.18 0.00 37.19 6.13
2896 3896 2.103094 TCCACCAAAGATAGATCTGCCG 59.897 50.000 5.18 0.00 37.19 5.69
2897 3897 3.845781 TCCACCAAAGATAGATCTGCC 57.154 47.619 5.18 0.00 37.19 4.85
2898 3898 5.506982 GCAAATCCACCAAAGATAGATCTGC 60.507 44.000 5.18 0.00 37.19 4.26
2899 3899 5.826737 AGCAAATCCACCAAAGATAGATCTG 59.173 40.000 5.18 0.00 37.19 2.90
2900 3900 6.011122 AGCAAATCCACCAAAGATAGATCT 57.989 37.500 0.00 0.00 39.22 2.75
2901 3901 5.049818 CGAGCAAATCCACCAAAGATAGATC 60.050 44.000 0.00 0.00 0.00 2.75
2902 3902 4.818546 CGAGCAAATCCACCAAAGATAGAT 59.181 41.667 0.00 0.00 0.00 1.98
2903 3903 4.191544 CGAGCAAATCCACCAAAGATAGA 58.808 43.478 0.00 0.00 0.00 1.98
2904 3904 3.313526 CCGAGCAAATCCACCAAAGATAG 59.686 47.826 0.00 0.00 0.00 2.08
2905 3905 3.054728 TCCGAGCAAATCCACCAAAGATA 60.055 43.478 0.00 0.00 0.00 1.98
2906 3906 2.094675 CCGAGCAAATCCACCAAAGAT 58.905 47.619 0.00 0.00 0.00 2.40
2907 3907 1.073125 TCCGAGCAAATCCACCAAAGA 59.927 47.619 0.00 0.00 0.00 2.52
2908 3908 1.533625 TCCGAGCAAATCCACCAAAG 58.466 50.000 0.00 0.00 0.00 2.77
2909 3909 2.091541 GATCCGAGCAAATCCACCAAA 58.908 47.619 0.00 0.00 0.00 3.28
2910 3910 1.281867 AGATCCGAGCAAATCCACCAA 59.718 47.619 0.00 0.00 0.00 3.67
2911 3911 0.911769 AGATCCGAGCAAATCCACCA 59.088 50.000 0.00 0.00 0.00 4.17
2912 3912 1.672881 CAAGATCCGAGCAAATCCACC 59.327 52.381 0.00 0.00 0.00 4.61
2913 3913 2.352960 GACAAGATCCGAGCAAATCCAC 59.647 50.000 0.00 0.00 0.00 4.02
2914 3914 2.632377 GACAAGATCCGAGCAAATCCA 58.368 47.619 0.00 0.00 0.00 3.41
2915 3915 1.594862 CGACAAGATCCGAGCAAATCC 59.405 52.381 0.00 0.00 0.00 3.01
2916 3916 2.271800 ACGACAAGATCCGAGCAAATC 58.728 47.619 0.00 0.00 0.00 2.17
2917 3917 2.386661 ACGACAAGATCCGAGCAAAT 57.613 45.000 0.00 0.00 0.00 2.32
2918 3918 2.163818 AACGACAAGATCCGAGCAAA 57.836 45.000 0.00 0.00 0.00 3.68
2919 3919 3.520290 ATAACGACAAGATCCGAGCAA 57.480 42.857 0.00 0.00 0.00 3.91
2920 3920 3.444916 GAATAACGACAAGATCCGAGCA 58.555 45.455 0.00 0.00 0.00 4.26
2921 3921 2.468040 CGAATAACGACAAGATCCGAGC 59.532 50.000 0.00 0.00 45.77 5.03
2922 3922 3.692576 ACGAATAACGACAAGATCCGAG 58.307 45.455 0.00 0.00 45.77 4.63
2923 3923 3.376234 AGACGAATAACGACAAGATCCGA 59.624 43.478 0.00 0.00 45.77 4.55
2924 3924 3.692576 AGACGAATAACGACAAGATCCG 58.307 45.455 0.00 0.00 45.77 4.18
2925 3925 4.669728 CGTAGACGAATAACGACAAGATCC 59.330 45.833 0.00 0.00 45.77 3.36
2926 3926 5.261661 ACGTAGACGAATAACGACAAGATC 58.738 41.667 9.41 0.00 45.77 2.75
2927 3927 5.227238 ACGTAGACGAATAACGACAAGAT 57.773 39.130 9.41 0.00 45.77 2.40
2928 3928 4.668576 ACGTAGACGAATAACGACAAGA 57.331 40.909 9.41 0.00 45.77 3.02
2929 3929 4.029784 CGAACGTAGACGAATAACGACAAG 60.030 45.833 9.41 0.00 45.77 3.16
2930 3930 3.840209 CGAACGTAGACGAATAACGACAA 59.160 43.478 9.41 0.00 45.77 3.18
2931 3931 3.120683 ACGAACGTAGACGAATAACGACA 60.121 43.478 9.41 0.00 45.77 4.35
2932 3932 3.233838 CACGAACGTAGACGAATAACGAC 59.766 47.826 9.41 0.00 45.77 4.34
2933 3933 3.120683 ACACGAACGTAGACGAATAACGA 60.121 43.478 9.41 0.00 45.77 3.85
2935 3935 3.908382 ACACACGAACGTAGACGAATAAC 59.092 43.478 9.41 0.00 43.02 1.89
2936 3936 4.083855 AGACACACGAACGTAGACGAATAA 60.084 41.667 9.41 0.00 43.02 1.40
2937 3937 3.433274 AGACACACGAACGTAGACGAATA 59.567 43.478 9.41 0.00 43.02 1.75
2938 3938 2.225019 AGACACACGAACGTAGACGAAT 59.775 45.455 9.41 0.00 43.02 3.34
2939 3939 1.599071 AGACACACGAACGTAGACGAA 59.401 47.619 9.41 0.00 43.02 3.85
2940 3940 1.220529 AGACACACGAACGTAGACGA 58.779 50.000 9.41 0.00 43.02 4.20
2941 3941 1.967908 GAAGACACACGAACGTAGACG 59.032 52.381 0.00 0.00 46.33 4.18
2942 3942 1.967908 CGAAGACACACGAACGTAGAC 59.032 52.381 0.00 0.00 0.00 2.59
2943 3943 1.069703 CCGAAGACACACGAACGTAGA 60.070 52.381 0.00 0.00 0.00 2.59
2944 3944 1.324718 CCGAAGACACACGAACGTAG 58.675 55.000 0.00 0.00 0.00 3.51
2945 3945 0.662619 ACCGAAGACACACGAACGTA 59.337 50.000 0.00 0.00 0.00 3.57
2946 3946 0.179129 AACCGAAGACACACGAACGT 60.179 50.000 0.00 0.00 0.00 3.99
2947 3947 2.585263 AACCGAAGACACACGAACG 58.415 52.632 0.00 0.00 0.00 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.