Multiple sequence alignment - TraesCS7D01G180200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G180200 chr7D 100.000 2639 0 0 1 2639 133328661 133326023 0.000000e+00 4874.0
1 TraesCS7D01G180200 chr7D 95.794 214 9 0 1 214 282878166 282878379 1.940000e-91 346.0
2 TraesCS7D01G180200 chr7D 96.875 32 1 0 2380 2411 133326219 133326188 1.000000e-03 54.7
3 TraesCS7D01G180200 chr7D 96.875 32 1 0 2443 2474 133326282 133326251 1.000000e-03 54.7
4 TraesCS7D01G180200 chr7A 95.045 1675 45 16 218 1871 131938023 131936366 0.000000e+00 2599.0
5 TraesCS7D01G180200 chr7A 83.465 254 28 5 2113 2353 131936369 131936117 9.510000e-55 224.0
6 TraesCS7D01G180200 chr7A 92.958 71 4 1 2475 2544 367017914 367017984 4.650000e-18 102.0
7 TraesCS7D01G180200 chr7B 95.392 1606 56 7 218 1813 94631502 94629905 0.000000e+00 2540.0
8 TraesCS7D01G180200 chr7B 91.667 84 7 0 2547 2630 606730436 606730519 1.660000e-22 117.0
9 TraesCS7D01G180200 chr7B 89.247 93 10 0 2547 2639 658055849 658055757 1.660000e-22 117.0
10 TraesCS7D01G180200 chr7B 93.056 72 3 2 2475 2544 119145303 119145232 1.290000e-18 104.0
11 TraesCS7D01G180200 chr7B 94.444 54 3 0 1819 1872 94629831 94629884 1.680000e-12 84.2
12 TraesCS7D01G180200 chr2D 90.973 709 57 7 937 1640 30980131 30979425 0.000000e+00 948.0
13 TraesCS7D01G180200 chr2D 87.798 713 61 11 937 1640 30935633 30934938 0.000000e+00 811.0
14 TraesCS7D01G180200 chr2D 95.349 215 9 1 1 214 541298644 541298858 9.050000e-90 340.0
15 TraesCS7D01G180200 chr2D 94.884 215 10 1 1 214 184276387 184276601 4.210000e-88 335.0
16 TraesCS7D01G180200 chr2D 79.259 135 27 1 1972 2105 201091918 201092052 2.800000e-15 93.5
17 TraesCS7D01G180200 chr2B 90.960 708 55 7 937 1639 51228693 51229396 0.000000e+00 944.0
18 TraesCS7D01G180200 chr2B 89.247 93 10 0 2547 2639 629660910 629660818 1.660000e-22 117.0
19 TraesCS7D01G180200 chr2B 87.879 99 9 3 2543 2639 441884485 441884582 2.150000e-21 113.0
20 TraesCS7D01G180200 chr2B 91.026 78 6 1 2475 2551 241376343 241376420 1.290000e-18 104.0
21 TraesCS7D01G180200 chr2A 90.449 712 58 9 937 1640 33271086 33270377 0.000000e+00 929.0
22 TraesCS7D01G180200 chr2A 94.884 215 10 1 1 214 39930313 39930527 4.210000e-88 335.0
23 TraesCS7D01G180200 chr2A 100.000 31 0 0 2352 2382 668172959 668172929 1.020000e-04 58.4
24 TraesCS7D01G180200 chr5B 97.196 214 5 1 1 214 320411130 320410918 6.940000e-96 361.0
25 TraesCS7D01G180200 chr5B 94.203 69 2 2 2475 2541 218214366 218214434 1.290000e-18 104.0
26 TraesCS7D01G180200 chr5B 93.056 72 3 2 2475 2544 697972313 697972384 1.290000e-18 104.0
27 TraesCS7D01G180200 chr5B 96.970 33 1 0 2019 2051 576252693 576252725 3.670000e-04 56.5
28 TraesCS7D01G180200 chr4B 95.349 215 9 1 1 214 545236787 545236573 9.050000e-90 340.0
29 TraesCS7D01G180200 chr4B 90.816 98 8 1 2543 2639 475281170 475281073 2.130000e-26 130.0
30 TraesCS7D01G180200 chr3D 94.884 215 10 1 1 214 145199585 145199371 4.210000e-88 335.0
31 TraesCS7D01G180200 chr3D 94.860 214 11 0 1 214 415464227 415464014 4.210000e-88 335.0
32 TraesCS7D01G180200 chr1D 94.860 214 11 0 1 214 400577173 400576960 4.210000e-88 335.0
33 TraesCS7D01G180200 chr1D 91.398 93 8 0 2547 2639 490946767 490946675 7.670000e-26 128.0
34 TraesCS7D01G180200 chr1D 94.366 71 3 1 2475 2544 193435002 193435072 9.990000e-20 108.0
35 TraesCS7D01G180200 chr1B 94.565 92 5 0 2547 2638 431464885 431464794 2.740000e-30 143.0
36 TraesCS7D01G180200 chr1B 91.781 73 4 2 2471 2541 550416799 550416727 1.670000e-17 100.0
37 TraesCS7D01G180200 chr1B 89.873 79 5 3 2475 2550 510601114 510601192 6.010000e-17 99.0
38 TraesCS7D01G180200 chrUn 93.548 93 6 0 2547 2639 79656301 79656393 3.540000e-29 139.0
39 TraesCS7D01G180200 chr6A 91.011 89 8 0 2551 2639 59079107 59079195 1.280000e-23 121.0
40 TraesCS7D01G180200 chr6B 92.208 77 3 3 2475 2549 709288100 709288175 3.590000e-19 106.0
41 TraesCS7D01G180200 chr5A 85.484 62 5 2 2337 2394 184018705 184018766 7.890000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G180200 chr7D 133326023 133328661 2638 True 1661.133333 4874 97.916667 1 2639 3 chr7D.!!$R1 2638
1 TraesCS7D01G180200 chr7A 131936117 131938023 1906 True 1411.500000 2599 89.255000 218 2353 2 chr7A.!!$R1 2135
2 TraesCS7D01G180200 chr7B 94629905 94631502 1597 True 2540.000000 2540 95.392000 218 1813 1 chr7B.!!$R1 1595
3 TraesCS7D01G180200 chr2D 30979425 30980131 706 True 948.000000 948 90.973000 937 1640 1 chr2D.!!$R2 703
4 TraesCS7D01G180200 chr2D 30934938 30935633 695 True 811.000000 811 87.798000 937 1640 1 chr2D.!!$R1 703
5 TraesCS7D01G180200 chr2B 51228693 51229396 703 False 944.000000 944 90.960000 937 1639 1 chr2B.!!$F1 702
6 TraesCS7D01G180200 chr2A 33270377 33271086 709 True 929.000000 929 90.449000 937 1640 1 chr2A.!!$R1 703

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
579 599 1.517694 CGGATGCATGCAACAAGCC 60.518 57.895 26.68 18.51 44.83 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2577 2622 0.386352 CGTGGACAGCTTGCATGTTG 60.386 55.0 13.76 13.76 0.0 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.458451 TGGAGGAGAGAGAACTCATAAGA 57.542 43.478 4.64 0.00 44.79 2.10
23 24 5.832221 TGGAGGAGAGAGAACTCATAAGAA 58.168 41.667 4.64 0.00 44.79 2.52
24 25 6.256819 TGGAGGAGAGAGAACTCATAAGAAA 58.743 40.000 4.64 0.00 44.79 2.52
25 26 6.726299 TGGAGGAGAGAGAACTCATAAGAAAA 59.274 38.462 4.64 0.00 44.79 2.29
26 27 7.093552 TGGAGGAGAGAGAACTCATAAGAAAAG 60.094 40.741 4.64 0.00 44.79 2.27
27 28 7.181569 AGGAGAGAGAACTCATAAGAAAAGG 57.818 40.000 4.64 0.00 44.79 3.11
28 29 5.815222 GGAGAGAGAACTCATAAGAAAAGGC 59.185 44.000 4.64 0.00 44.79 4.35
29 30 6.351796 GGAGAGAGAACTCATAAGAAAAGGCT 60.352 42.308 4.64 0.00 44.79 4.58
30 31 7.014988 AGAGAGAACTCATAAGAAAAGGCTT 57.985 36.000 0.00 0.00 44.79 4.35
31 32 6.878389 AGAGAGAACTCATAAGAAAAGGCTTG 59.122 38.462 0.00 0.00 44.79 4.01
32 33 6.538263 AGAGAACTCATAAGAAAAGGCTTGT 58.462 36.000 0.00 0.00 0.00 3.16
33 34 6.652900 AGAGAACTCATAAGAAAAGGCTTGTC 59.347 38.462 9.51 9.51 0.00 3.18
34 35 6.538263 AGAACTCATAAGAAAAGGCTTGTCT 58.462 36.000 14.33 14.33 0.00 3.41
35 36 7.001073 AGAACTCATAAGAAAAGGCTTGTCTT 58.999 34.615 30.04 30.04 35.77 3.01
36 37 6.809630 ACTCATAAGAAAAGGCTTGTCTTC 57.190 37.500 30.86 17.17 33.70 2.87
37 38 6.538263 ACTCATAAGAAAAGGCTTGTCTTCT 58.462 36.000 30.86 21.01 33.70 2.85
38 39 6.652900 ACTCATAAGAAAAGGCTTGTCTTCTC 59.347 38.462 30.86 8.39 33.70 2.87
39 40 6.773638 TCATAAGAAAAGGCTTGTCTTCTCT 58.226 36.000 30.86 16.87 33.70 3.10
40 41 7.227156 TCATAAGAAAAGGCTTGTCTTCTCTT 58.773 34.615 30.86 18.21 37.66 2.85
41 42 8.375506 TCATAAGAAAAGGCTTGTCTTCTCTTA 58.624 33.333 30.86 16.85 39.30 2.10
42 43 9.171877 CATAAGAAAAGGCTTGTCTTCTCTTAT 57.828 33.333 30.86 18.17 42.82 1.73
43 44 9.746457 ATAAGAAAAGGCTTGTCTTCTCTTATT 57.254 29.630 30.86 11.70 40.94 1.40
44 45 8.470657 AAGAAAAGGCTTGTCTTCTCTTATTT 57.529 30.769 23.96 2.07 33.68 1.40
45 46 9.574516 AAGAAAAGGCTTGTCTTCTCTTATTTA 57.425 29.630 23.96 0.00 33.68 1.40
46 47 9.574516 AGAAAAGGCTTGTCTTCTCTTATTTAA 57.425 29.630 14.33 0.00 0.00 1.52
47 48 9.833182 GAAAAGGCTTGTCTTCTCTTATTTAAG 57.167 33.333 10.26 0.00 34.65 1.85
48 49 9.574516 AAAAGGCTTGTCTTCTCTTATTTAAGA 57.425 29.630 0.00 0.44 39.82 2.10
82 83 8.830201 GAGATGATCTCTTAGCACAATATGTT 57.170 34.615 14.98 0.00 40.30 2.71
83 84 9.270640 GAGATGATCTCTTAGCACAATATGTTT 57.729 33.333 14.98 0.00 40.30 2.83
84 85 9.270640 AGATGATCTCTTAGCACAATATGTTTC 57.729 33.333 0.00 0.00 0.00 2.78
85 86 8.969260 ATGATCTCTTAGCACAATATGTTTCA 57.031 30.769 0.00 0.00 0.00 2.69
86 87 8.201554 TGATCTCTTAGCACAATATGTTTCAC 57.798 34.615 0.00 0.00 0.00 3.18
87 88 6.985188 TCTCTTAGCACAATATGTTTCACC 57.015 37.500 0.00 0.00 0.00 4.02
88 89 6.472016 TCTCTTAGCACAATATGTTTCACCA 58.528 36.000 0.00 0.00 0.00 4.17
89 90 7.112122 TCTCTTAGCACAATATGTTTCACCAT 58.888 34.615 0.00 0.00 0.00 3.55
90 91 7.066163 TCTCTTAGCACAATATGTTTCACCATG 59.934 37.037 0.00 0.00 0.00 3.66
91 92 6.658816 TCTTAGCACAATATGTTTCACCATGT 59.341 34.615 0.00 0.00 0.00 3.21
92 93 5.726980 AGCACAATATGTTTCACCATGTT 57.273 34.783 0.00 0.00 0.00 2.71
93 94 6.100404 AGCACAATATGTTTCACCATGTTT 57.900 33.333 0.00 0.00 0.00 2.83
94 95 6.523840 AGCACAATATGTTTCACCATGTTTT 58.476 32.000 0.00 0.00 0.00 2.43
95 96 6.991531 AGCACAATATGTTTCACCATGTTTTT 59.008 30.769 0.00 0.00 0.00 1.94
96 97 8.147058 AGCACAATATGTTTCACCATGTTTTTA 58.853 29.630 0.00 0.00 0.00 1.52
97 98 8.434661 GCACAATATGTTTCACCATGTTTTTAG 58.565 33.333 0.00 0.00 0.00 1.85
98 99 8.924691 CACAATATGTTTCACCATGTTTTTAGG 58.075 33.333 0.00 0.00 0.00 2.69
99 100 8.865090 ACAATATGTTTCACCATGTTTTTAGGA 58.135 29.630 0.00 0.00 0.00 2.94
100 101 9.703892 CAATATGTTTCACCATGTTTTTAGGAA 57.296 29.630 0.00 0.00 0.00 3.36
104 105 7.375053 TGTTTCACCATGTTTTTAGGAATAGC 58.625 34.615 0.00 0.00 0.00 2.97
105 106 7.232534 TGTTTCACCATGTTTTTAGGAATAGCT 59.767 33.333 0.00 0.00 0.00 3.32
106 107 8.736244 GTTTCACCATGTTTTTAGGAATAGCTA 58.264 33.333 0.00 0.00 0.00 3.32
107 108 8.506168 TTCACCATGTTTTTAGGAATAGCTAG 57.494 34.615 0.00 0.00 0.00 3.42
108 109 7.630082 TCACCATGTTTTTAGGAATAGCTAGT 58.370 34.615 0.00 0.00 0.00 2.57
109 110 8.107095 TCACCATGTTTTTAGGAATAGCTAGTT 58.893 33.333 0.00 0.00 0.00 2.24
110 111 9.391006 CACCATGTTTTTAGGAATAGCTAGTTA 57.609 33.333 0.00 0.00 0.00 2.24
123 124 9.157104 GGAATAGCTAGTTATTGAAGATAAGGC 57.843 37.037 15.66 0.00 0.00 4.35
124 125 9.936759 GAATAGCTAGTTATTGAAGATAAGGCT 57.063 33.333 15.66 0.00 0.00 4.58
128 129 9.148879 AGCTAGTTATTGAAGATAAGGCTAAGA 57.851 33.333 0.00 0.00 0.00 2.10
129 130 9.418045 GCTAGTTATTGAAGATAAGGCTAAGAG 57.582 37.037 0.00 0.00 0.00 2.85
132 133 9.995003 AGTTATTGAAGATAAGGCTAAGAGATG 57.005 33.333 0.00 0.00 0.00 2.90
133 134 9.213799 GTTATTGAAGATAAGGCTAAGAGATGG 57.786 37.037 0.00 0.00 0.00 3.51
134 135 5.220710 TGAAGATAAGGCTAAGAGATGGC 57.779 43.478 0.00 0.00 34.16 4.40
135 136 4.904251 TGAAGATAAGGCTAAGAGATGGCT 59.096 41.667 0.00 0.00 40.91 4.75
136 137 5.011533 TGAAGATAAGGCTAAGAGATGGCTC 59.988 44.000 0.00 0.00 41.62 4.70
137 138 4.487804 AGATAAGGCTAAGAGATGGCTCA 58.512 43.478 0.00 0.00 43.81 4.26
138 139 5.092968 AGATAAGGCTAAGAGATGGCTCAT 58.907 41.667 0.00 0.00 43.81 2.90
139 140 5.547276 AGATAAGGCTAAGAGATGGCTCATT 59.453 40.000 0.00 0.00 43.81 2.57
140 141 3.488778 AGGCTAAGAGATGGCTCATTG 57.511 47.619 0.00 0.00 43.81 2.82
141 142 2.776536 AGGCTAAGAGATGGCTCATTGT 59.223 45.455 0.00 0.00 43.81 2.71
142 143 3.969976 AGGCTAAGAGATGGCTCATTGTA 59.030 43.478 0.00 0.00 43.81 2.41
143 144 4.040217 AGGCTAAGAGATGGCTCATTGTAG 59.960 45.833 0.00 0.00 43.81 2.74
144 145 4.039730 GGCTAAGAGATGGCTCATTGTAGA 59.960 45.833 0.00 0.00 43.81 2.59
145 146 4.987912 GCTAAGAGATGGCTCATTGTAGAC 59.012 45.833 0.00 0.00 43.81 2.59
146 147 5.452496 GCTAAGAGATGGCTCATTGTAGACA 60.452 44.000 0.00 0.00 43.81 3.41
148 149 5.627182 AGAGATGGCTCATTGTAGACATT 57.373 39.130 6.08 0.00 45.51 2.71
149 150 5.999044 AGAGATGGCTCATTGTAGACATTT 58.001 37.500 6.08 1.87 45.51 2.32
150 151 6.421485 AGAGATGGCTCATTGTAGACATTTT 58.579 36.000 6.08 0.46 45.51 1.82
151 152 6.888632 AGAGATGGCTCATTGTAGACATTTTT 59.111 34.615 6.08 0.00 45.51 1.94
177 178 9.844790 TTTTGTCATCTCTAAATTACATGCAAG 57.155 29.630 0.00 0.00 0.00 4.01
178 179 8.791327 TTGTCATCTCTAAATTACATGCAAGA 57.209 30.769 0.00 0.00 0.00 3.02
179 180 8.201554 TGTCATCTCTAAATTACATGCAAGAC 57.798 34.615 0.00 0.00 0.00 3.01
180 181 8.043113 TGTCATCTCTAAATTACATGCAAGACT 58.957 33.333 0.00 0.00 0.00 3.24
181 182 8.887717 GTCATCTCTAAATTACATGCAAGACTT 58.112 33.333 0.00 0.00 0.00 3.01
374 375 2.819595 CCGTTGGTCCAGGCATCG 60.820 66.667 0.00 0.00 0.00 3.84
430 431 5.634118 ACCACAAAATCTCCAAGATCTTGA 58.366 37.500 32.49 18.78 35.27 3.02
444 445 6.071728 CCAAGATCTTGAACCAGCAGTTAAAT 60.072 38.462 32.49 0.00 42.93 1.40
510 529 1.608590 CGGTGCAGTTTTTGTCTCCAT 59.391 47.619 0.00 0.00 0.00 3.41
579 599 1.517694 CGGATGCATGCAACAAGCC 60.518 57.895 26.68 18.51 44.83 4.35
609 629 3.827898 GACCGGCTCGCACTAGCT 61.828 66.667 0.00 0.00 42.37 3.32
675 695 4.703897 ACAATGGGTAGTTCACATATCCG 58.296 43.478 0.00 0.00 39.55 4.18
682 702 5.223382 GGTAGTTCACATATCCGTCTCATG 58.777 45.833 0.00 0.00 0.00 3.07
702 722 5.711506 TCATGGTAAAAACAGCTCATCATGT 59.288 36.000 0.00 0.00 33.42 3.21
808 828 3.241530 TTGTCCACTGGCTCCGCT 61.242 61.111 0.00 0.00 0.00 5.52
862 882 1.585006 CACGTGAACCCTAGCTCGT 59.415 57.895 10.90 0.00 35.00 4.18
917 941 4.742201 CGTACCAGCTGCACGGCT 62.742 66.667 23.77 0.00 44.10 5.52
918 942 2.577059 GTACCAGCTGCACGGCTA 59.423 61.111 8.66 0.00 41.00 3.93
919 943 1.519455 GTACCAGCTGCACGGCTAG 60.519 63.158 8.66 0.00 41.00 3.42
920 944 3.371097 TACCAGCTGCACGGCTAGC 62.371 63.158 8.66 6.04 41.00 3.42
1045 1076 1.341482 TGCTCATCTCCTTCCTCGTCT 60.341 52.381 0.00 0.00 0.00 4.18
1642 1673 3.508840 GCGGCAGCGGCTAATTGT 61.509 61.111 17.35 0.00 40.87 2.71
1648 1679 0.523072 CAGCGGCTAATTGTGCAGTT 59.477 50.000 0.26 0.00 0.00 3.16
1649 1680 0.804989 AGCGGCTAATTGTGCAGTTC 59.195 50.000 0.00 0.00 0.00 3.01
1650 1681 0.804989 GCGGCTAATTGTGCAGTTCT 59.195 50.000 7.41 0.00 0.00 3.01
1651 1682 1.202076 GCGGCTAATTGTGCAGTTCTC 60.202 52.381 7.41 0.00 0.00 2.87
1652 1683 2.076100 CGGCTAATTGTGCAGTTCTCA 58.924 47.619 7.41 0.00 0.00 3.27
1653 1684 2.094894 CGGCTAATTGTGCAGTTCTCAG 59.905 50.000 7.41 0.00 0.00 3.35
1654 1685 2.421424 GGCTAATTGTGCAGTTCTCAGG 59.579 50.000 7.41 0.00 0.00 3.86
1660 1691 1.762370 TGTGCAGTTCTCAGGTCTCAA 59.238 47.619 0.00 0.00 0.00 3.02
1666 1697 3.812053 CAGTTCTCAGGTCTCAACAAAGG 59.188 47.826 0.00 0.00 0.00 3.11
1795 1826 8.828688 TTTCATTTGATAATTGTCAATGCACA 57.171 26.923 17.07 3.93 37.88 4.57
1827 1860 1.264295 AGAAGGTTGTACCCTCGGAC 58.736 55.000 0.00 0.00 39.75 4.79
1853 1886 3.857052 TCTCGATTGATGTACACAACCC 58.143 45.455 0.00 1.00 0.00 4.11
1857 1890 5.067273 TCGATTGATGTACACAACCCTTTT 58.933 37.500 0.00 0.00 0.00 2.27
1862 1895 6.019779 TGATGTACACAACCCTTTTATTGC 57.980 37.500 0.00 0.00 0.00 3.56
1868 1901 5.739959 ACACAACCCTTTTATTGCAAAGTT 58.260 33.333 1.71 0.00 32.61 2.66
1869 1902 6.176896 ACACAACCCTTTTATTGCAAAGTTT 58.823 32.000 1.71 0.00 32.61 2.66
1870 1903 6.657117 ACACAACCCTTTTATTGCAAAGTTTT 59.343 30.769 1.71 0.00 32.61 2.43
1871 1904 7.175816 ACACAACCCTTTTATTGCAAAGTTTTT 59.824 29.630 1.71 0.00 32.61 1.94
1872 1905 7.696035 CACAACCCTTTTATTGCAAAGTTTTTC 59.304 33.333 1.71 0.00 32.61 2.29
1873 1906 6.935741 ACCCTTTTATTGCAAAGTTTTTCC 57.064 33.333 1.71 0.00 32.61 3.13
1874 1907 5.525745 ACCCTTTTATTGCAAAGTTTTTCCG 59.474 36.000 1.71 0.00 32.61 4.30
1875 1908 5.755861 CCCTTTTATTGCAAAGTTTTTCCGA 59.244 36.000 1.71 0.00 32.61 4.55
1876 1909 6.258947 CCCTTTTATTGCAAAGTTTTTCCGAA 59.741 34.615 1.71 0.00 32.61 4.30
1877 1910 7.201652 CCCTTTTATTGCAAAGTTTTTCCGAAA 60.202 33.333 1.71 0.00 32.61 3.46
1878 1911 7.638295 CCTTTTATTGCAAAGTTTTTCCGAAAC 59.362 33.333 1.71 0.00 32.61 2.78
1879 1912 4.770351 ATTGCAAAGTTTTTCCGAAACG 57.230 36.364 1.71 0.00 35.42 3.60
1880 1913 3.489180 TGCAAAGTTTTTCCGAAACGA 57.511 38.095 0.00 0.00 35.42 3.85
1881 1914 4.035278 TGCAAAGTTTTTCCGAAACGAT 57.965 36.364 0.00 0.00 35.42 3.73
1882 1915 3.794028 TGCAAAGTTTTTCCGAAACGATG 59.206 39.130 0.00 0.00 35.42 3.84
1883 1916 4.039032 GCAAAGTTTTTCCGAAACGATGA 58.961 39.130 11.27 0.00 35.42 2.92
1884 1917 4.146443 GCAAAGTTTTTCCGAAACGATGAG 59.854 41.667 11.27 0.00 35.42 2.90
1885 1918 5.270853 CAAAGTTTTTCCGAAACGATGAGT 58.729 37.500 0.00 0.00 35.42 3.41
1886 1919 4.468095 AGTTTTTCCGAAACGATGAGTG 57.532 40.909 0.00 0.00 35.42 3.51
1887 1920 3.875134 AGTTTTTCCGAAACGATGAGTGT 59.125 39.130 0.00 0.00 35.42 3.55
1888 1921 4.025145 AGTTTTTCCGAAACGATGAGTGTC 60.025 41.667 0.00 0.00 35.42 3.67
1889 1922 2.804697 TTCCGAAACGATGAGTGTCA 57.195 45.000 0.00 0.00 36.90 3.58
1890 1923 2.060326 TCCGAAACGATGAGTGTCAC 57.940 50.000 0.00 0.00 36.90 3.67
1891 1924 1.338655 TCCGAAACGATGAGTGTCACA 59.661 47.619 5.62 0.00 36.90 3.58
1892 1925 2.029380 TCCGAAACGATGAGTGTCACAT 60.029 45.455 5.62 0.00 36.90 3.21
1893 1926 2.092681 CCGAAACGATGAGTGTCACATG 59.907 50.000 5.62 0.00 36.90 3.21
1894 1927 2.731451 CGAAACGATGAGTGTCACATGT 59.269 45.455 5.62 0.00 36.90 3.21
1895 1928 3.422214 CGAAACGATGAGTGTCACATGTG 60.422 47.826 20.18 20.18 36.90 3.21
1896 1929 2.820059 ACGATGAGTGTCACATGTGT 57.180 45.000 24.63 6.04 0.00 3.72
1897 1930 2.407090 ACGATGAGTGTCACATGTGTG 58.593 47.619 24.63 6.81 46.91 3.82
1898 1931 1.127397 CGATGAGTGTCACATGTGTGC 59.873 52.381 24.63 18.32 45.25 4.57
1899 1932 1.466167 GATGAGTGTCACATGTGTGCC 59.534 52.381 24.63 14.31 45.25 5.01
1900 1933 0.179936 TGAGTGTCACATGTGTGCCA 59.820 50.000 24.63 16.52 45.25 4.92
1909 1942 4.753542 TGTGTGCCACAAACCACT 57.246 50.000 0.00 0.00 41.69 4.00
1910 1943 2.487918 TGTGTGCCACAAACCACTC 58.512 52.632 0.00 0.00 41.69 3.51
1911 1944 0.034574 TGTGTGCCACAAACCACTCT 60.035 50.000 0.00 0.00 41.69 3.24
1912 1945 0.381801 GTGTGCCACAAACCACTCTG 59.618 55.000 0.00 0.00 34.08 3.35
1913 1946 0.751277 TGTGCCACAAACCACTCTGG 60.751 55.000 0.00 0.00 45.02 3.86
1914 1947 3.042560 GCCACAAACCACTCTGGC 58.957 61.111 0.00 0.00 42.67 4.85
1915 1948 2.564721 GCCACAAACCACTCTGGCC 61.565 63.158 0.00 0.00 42.67 5.36
1916 1949 1.151450 CCACAAACCACTCTGGCCT 59.849 57.895 3.32 0.00 42.67 5.19
1917 1950 0.468029 CCACAAACCACTCTGGCCTT 60.468 55.000 3.32 0.00 42.67 4.35
1918 1951 0.670162 CACAAACCACTCTGGCCTTG 59.330 55.000 3.32 0.00 42.67 3.61
1919 1952 0.550914 ACAAACCACTCTGGCCTTGA 59.449 50.000 3.32 0.99 42.67 3.02
1920 1953 0.954452 CAAACCACTCTGGCCTTGAC 59.046 55.000 3.32 0.00 42.67 3.18
1921 1954 0.846693 AAACCACTCTGGCCTTGACT 59.153 50.000 3.32 0.00 42.67 3.41
1922 1955 0.846693 AACCACTCTGGCCTTGACTT 59.153 50.000 3.32 0.00 42.67 3.01
1923 1956 0.846693 ACCACTCTGGCCTTGACTTT 59.153 50.000 3.32 0.00 42.67 2.66
1924 1957 1.215423 ACCACTCTGGCCTTGACTTTT 59.785 47.619 3.32 0.00 42.67 2.27
1925 1958 2.310538 CCACTCTGGCCTTGACTTTTT 58.689 47.619 3.32 0.00 0.00 1.94
2019 2052 9.606631 AAAAAGTTGTTATGCTTGATAACCAAA 57.393 25.926 0.00 0.00 44.16 3.28
2020 2053 8.816640 AAAGTTGTTATGCTTGATAACCAAAG 57.183 30.769 0.00 0.00 44.16 2.77
2021 2054 7.524717 AGTTGTTATGCTTGATAACCAAAGT 57.475 32.000 0.00 0.00 44.16 2.66
2022 2055 7.951591 AGTTGTTATGCTTGATAACCAAAGTT 58.048 30.769 0.00 0.00 44.16 2.66
2023 2056 7.867403 AGTTGTTATGCTTGATAACCAAAGTTG 59.133 33.333 0.00 0.00 44.16 3.16
2024 2057 7.283625 TGTTATGCTTGATAACCAAAGTTGT 57.716 32.000 0.00 0.00 44.16 3.32
2025 2058 7.367285 TGTTATGCTTGATAACCAAAGTTGTC 58.633 34.615 0.00 0.00 44.16 3.18
2032 2065 4.935205 TGATAACCAAAGTTGTCATCCTCG 59.065 41.667 1.81 0.00 45.73 4.63
2033 2066 1.523758 ACCAAAGTTGTCATCCTCGC 58.476 50.000 0.00 0.00 0.00 5.03
2034 2067 1.202758 ACCAAAGTTGTCATCCTCGCA 60.203 47.619 0.00 0.00 0.00 5.10
2035 2068 2.086869 CCAAAGTTGTCATCCTCGCAT 58.913 47.619 0.00 0.00 0.00 4.73
2036 2069 2.096496 CCAAAGTTGTCATCCTCGCATC 59.904 50.000 0.00 0.00 0.00 3.91
2037 2070 2.743664 CAAAGTTGTCATCCTCGCATCA 59.256 45.455 0.00 0.00 0.00 3.07
2038 2071 2.996249 AGTTGTCATCCTCGCATCAT 57.004 45.000 0.00 0.00 0.00 2.45
2039 2072 3.272574 AGTTGTCATCCTCGCATCATT 57.727 42.857 0.00 0.00 0.00 2.57
2040 2073 4.406648 AGTTGTCATCCTCGCATCATTA 57.593 40.909 0.00 0.00 0.00 1.90
2041 2074 4.769688 AGTTGTCATCCTCGCATCATTAA 58.230 39.130 0.00 0.00 0.00 1.40
2042 2075 5.185454 AGTTGTCATCCTCGCATCATTAAA 58.815 37.500 0.00 0.00 0.00 1.52
2043 2076 5.065218 AGTTGTCATCCTCGCATCATTAAAC 59.935 40.000 0.00 0.00 0.00 2.01
2044 2077 4.769688 TGTCATCCTCGCATCATTAAACT 58.230 39.130 0.00 0.00 0.00 2.66
2045 2078 5.185454 TGTCATCCTCGCATCATTAAACTT 58.815 37.500 0.00 0.00 0.00 2.66
2046 2079 5.065090 TGTCATCCTCGCATCATTAAACTTG 59.935 40.000 0.00 0.00 0.00 3.16
2047 2080 5.065218 GTCATCCTCGCATCATTAAACTTGT 59.935 40.000 0.00 0.00 0.00 3.16
2048 2081 5.294306 TCATCCTCGCATCATTAAACTTGTC 59.706 40.000 0.00 0.00 0.00 3.18
2049 2082 4.574892 TCCTCGCATCATTAAACTTGTCA 58.425 39.130 0.00 0.00 0.00 3.58
2050 2083 5.185454 TCCTCGCATCATTAAACTTGTCAT 58.815 37.500 0.00 0.00 0.00 3.06
2051 2084 6.345298 TCCTCGCATCATTAAACTTGTCATA 58.655 36.000 0.00 0.00 0.00 2.15
2052 2085 6.821160 TCCTCGCATCATTAAACTTGTCATAA 59.179 34.615 0.00 0.00 0.00 1.90
2053 2086 7.335673 TCCTCGCATCATTAAACTTGTCATAAA 59.664 33.333 0.00 0.00 0.00 1.40
2054 2087 7.967854 CCTCGCATCATTAAACTTGTCATAAAA 59.032 33.333 0.00 0.00 0.00 1.52
2055 2088 9.340695 CTCGCATCATTAAACTTGTCATAAAAA 57.659 29.630 0.00 0.00 0.00 1.94
2082 2115 7.962964 ATTCGGAAATATCATATGTTCGTGT 57.037 32.000 1.90 0.00 0.00 4.49
2083 2116 7.402811 TTCGGAAATATCATATGTTCGTGTC 57.597 36.000 1.90 0.00 0.00 3.67
2084 2117 6.508777 TCGGAAATATCATATGTTCGTGTCA 58.491 36.000 1.90 0.00 0.00 3.58
2085 2118 6.419710 TCGGAAATATCATATGTTCGTGTCAC 59.580 38.462 1.90 0.00 0.00 3.67
2086 2119 6.200097 CGGAAATATCATATGTTCGTGTCACA 59.800 38.462 3.42 0.00 0.00 3.58
2087 2120 7.095649 CGGAAATATCATATGTTCGTGTCACAT 60.096 37.037 3.42 0.00 38.45 3.21
2088 2121 9.203421 GGAAATATCATATGTTCGTGTCACATA 57.797 33.333 3.42 0.00 40.56 2.29
2093 2126 8.707938 ATCATATGTTCGTGTCACATATATGG 57.292 34.615 16.96 6.31 43.18 2.74
2094 2127 6.589907 TCATATGTTCGTGTCACATATATGGC 59.410 38.462 16.96 7.33 43.18 4.40
2095 2128 4.130286 TGTTCGTGTCACATATATGGCA 57.870 40.909 16.96 9.64 0.00 4.92
2104 2137 6.466812 TGTCACATATATGGCACTTATCAGG 58.533 40.000 16.96 0.00 0.00 3.86
2105 2138 6.269769 TGTCACATATATGGCACTTATCAGGA 59.730 38.462 16.96 0.00 0.00 3.86
2106 2139 7.038088 TGTCACATATATGGCACTTATCAGGAT 60.038 37.037 16.96 0.00 0.00 3.24
2107 2140 7.493971 GTCACATATATGGCACTTATCAGGATC 59.506 40.741 16.96 0.00 0.00 3.36
2108 2141 7.401204 TCACATATATGGCACTTATCAGGATCT 59.599 37.037 16.96 0.00 0.00 2.75
2109 2142 8.699130 CACATATATGGCACTTATCAGGATCTA 58.301 37.037 16.96 0.00 0.00 1.98
2110 2143 9.271921 ACATATATGGCACTTATCAGGATCTAA 57.728 33.333 16.96 0.00 0.00 2.10
2140 2173 5.219226 TGTGAACTAAAAAGAAAACGCGA 57.781 34.783 15.93 0.00 0.00 5.87
2146 2179 3.430333 AAAAAGAAAACGCGACCACAT 57.570 38.095 15.93 0.00 0.00 3.21
2154 2187 1.154413 CGCGACCACATGAACAAGC 60.154 57.895 0.00 0.00 0.00 4.01
2167 2200 9.499479 CCACATGAACAAGCTATAGAGATTTAT 57.501 33.333 3.21 0.00 0.00 1.40
2218 2251 6.584185 ATTGCTATGCTATCATGCAAATCA 57.416 33.333 15.37 0.78 46.61 2.57
2221 2254 5.533528 TGCTATGCTATCATGCAAATCAGTT 59.466 36.000 0.00 0.00 46.61 3.16
2240 2273 3.566742 AGTTGAATAAAACCCGTGTGACC 59.433 43.478 0.00 0.00 0.00 4.02
2241 2274 3.210232 TGAATAAAACCCGTGTGACCA 57.790 42.857 0.00 0.00 0.00 4.02
2244 2277 3.713826 ATAAAACCCGTGTGACCATCT 57.286 42.857 0.00 0.00 0.00 2.90
2251 2284 1.739466 CCGTGTGACCATCTCCAAATG 59.261 52.381 0.00 0.00 0.00 2.32
2273 2316 4.656112 TGGAGTCCAGAAGAAAAGAACTCT 59.344 41.667 8.12 0.00 0.00 3.24
2297 2340 3.670625 AGCATCCACACGCTAAAGTAAA 58.329 40.909 0.00 0.00 36.50 2.01
2301 2344 4.595762 TCCACACGCTAAAGTAAAGACT 57.404 40.909 0.00 0.00 37.59 3.24
2302 2345 4.304110 TCCACACGCTAAAGTAAAGACTG 58.696 43.478 0.00 0.00 35.52 3.51
2304 2347 2.729882 ACACGCTAAAGTAAAGACTGCG 59.270 45.455 0.00 0.00 45.91 5.18
2308 2351 2.159693 GCTAAAGTAAAGACTGCGCACC 60.160 50.000 5.66 0.41 35.52 5.01
2310 2353 1.512926 AAGTAAAGACTGCGCACCTG 58.487 50.000 5.66 0.00 35.52 4.00
2311 2354 0.679505 AGTAAAGACTGCGCACCTGA 59.320 50.000 5.66 0.00 33.41 3.86
2315 2360 0.244994 AAGACTGCGCACCTGACTAG 59.755 55.000 5.66 0.00 0.00 2.57
2317 2362 0.809385 GACTGCGCACCTGACTAGTA 59.191 55.000 5.66 0.00 0.00 1.82
2320 2365 1.320344 TGCGCACCTGACTAGTAGGG 61.320 60.000 5.66 14.49 39.71 3.53
2367 2412 7.897575 AGTCTCTTCGATCCATATTAATTGC 57.102 36.000 0.00 0.00 0.00 3.56
2368 2413 6.876257 AGTCTCTTCGATCCATATTAATTGCC 59.124 38.462 0.00 0.00 0.00 4.52
2369 2414 5.869344 TCTCTTCGATCCATATTAATTGCCG 59.131 40.000 0.00 0.00 0.00 5.69
2370 2415 4.391830 TCTTCGATCCATATTAATTGCCGC 59.608 41.667 0.00 0.00 0.00 6.53
2371 2416 3.937814 TCGATCCATATTAATTGCCGCT 58.062 40.909 0.00 0.00 0.00 5.52
2372 2417 3.684305 TCGATCCATATTAATTGCCGCTG 59.316 43.478 0.00 0.00 0.00 5.18
2373 2418 3.728864 CGATCCATATTAATTGCCGCTGC 60.729 47.826 0.00 0.00 38.26 5.25
2374 2419 2.862541 TCCATATTAATTGCCGCTGCT 58.137 42.857 0.70 0.00 38.71 4.24
2375 2420 3.221771 TCCATATTAATTGCCGCTGCTT 58.778 40.909 0.70 0.00 38.71 3.91
2376 2421 3.636300 TCCATATTAATTGCCGCTGCTTT 59.364 39.130 0.70 0.00 38.71 3.51
2377 2422 4.824537 TCCATATTAATTGCCGCTGCTTTA 59.175 37.500 0.70 0.00 38.71 1.85
2378 2423 5.048782 TCCATATTAATTGCCGCTGCTTTAG 60.049 40.000 0.70 0.00 38.71 1.85
2379 2424 5.278463 CCATATTAATTGCCGCTGCTTTAGT 60.278 40.000 0.70 0.09 38.71 2.24
2380 2425 6.072728 CCATATTAATTGCCGCTGCTTTAGTA 60.073 38.462 0.70 2.19 38.71 1.82
2381 2426 7.362056 CCATATTAATTGCCGCTGCTTTAGTAT 60.362 37.037 0.70 4.21 38.71 2.12
2382 2427 8.664798 CATATTAATTGCCGCTGCTTTAGTATA 58.335 33.333 0.70 0.00 38.71 1.47
2383 2428 7.687941 ATTAATTGCCGCTGCTTTAGTATAT 57.312 32.000 0.70 0.00 38.71 0.86
2384 2429 7.504924 TTAATTGCCGCTGCTTTAGTATATT 57.495 32.000 0.70 0.00 38.71 1.28
2385 2430 6.391227 AATTGCCGCTGCTTTAGTATATTT 57.609 33.333 0.70 0.00 38.71 1.40
2386 2431 4.811555 TGCCGCTGCTTTAGTATATTTG 57.188 40.909 0.70 0.00 38.71 2.32
2387 2432 4.196193 TGCCGCTGCTTTAGTATATTTGT 58.804 39.130 0.70 0.00 38.71 2.83
2388 2433 5.361427 TGCCGCTGCTTTAGTATATTTGTA 58.639 37.500 0.70 0.00 38.71 2.41
2389 2434 5.235616 TGCCGCTGCTTTAGTATATTTGTAC 59.764 40.000 0.70 0.00 38.71 2.90
2390 2435 5.465724 GCCGCTGCTTTAGTATATTTGTACT 59.534 40.000 0.00 0.00 35.34 2.73
2391 2436 6.643770 GCCGCTGCTTTAGTATATTTGTACTA 59.356 38.462 0.00 0.00 34.07 1.82
2392 2437 7.170320 GCCGCTGCTTTAGTATATTTGTACTAA 59.830 37.037 0.00 3.62 42.43 2.24
2393 2438 9.037737 CCGCTGCTTTAGTATATTTGTACTAAA 57.962 33.333 14.85 14.85 46.73 1.85
2402 2447 8.550710 AGTATATTTGTACTAAAACAACGCCA 57.449 30.769 0.00 0.00 39.02 5.69
2403 2448 9.001542 AGTATATTTGTACTAAAACAACGCCAA 57.998 29.630 0.00 0.00 39.02 4.52
2404 2449 9.777575 GTATATTTGTACTAAAACAACGCCAAT 57.222 29.630 0.00 0.00 39.02 3.16
2408 2453 9.699703 ATTTGTACTAAAACAACGCCAATTAAT 57.300 25.926 0.00 0.00 39.02 1.40
2411 2456 9.776158 TGTACTAAAACAACGCCAATTAATATG 57.224 29.630 0.00 0.00 0.00 1.78
2412 2457 9.228636 GTACTAAAACAACGCCAATTAATATGG 57.771 33.333 10.57 10.57 41.08 2.74
2413 2458 8.057536 ACTAAAACAACGCCAATTAATATGGA 57.942 30.769 16.30 0.00 40.56 3.41
2414 2459 8.691797 ACTAAAACAACGCCAATTAATATGGAT 58.308 29.630 16.30 5.15 40.56 3.41
2415 2460 9.180678 CTAAAACAACGCCAATTAATATGGATC 57.819 33.333 16.30 0.00 40.56 3.36
2416 2461 6.959639 AACAACGCCAATTAATATGGATCT 57.040 33.333 16.30 2.13 40.56 2.75
2417 2462 6.317789 ACAACGCCAATTAATATGGATCTG 57.682 37.500 16.30 12.05 40.56 2.90
2418 2463 6.061441 ACAACGCCAATTAATATGGATCTGA 58.939 36.000 16.30 0.00 40.56 3.27
2419 2464 6.716628 ACAACGCCAATTAATATGGATCTGAT 59.283 34.615 16.30 0.00 40.56 2.90
2420 2465 6.748333 ACGCCAATTAATATGGATCTGATG 57.252 37.500 16.30 0.00 40.56 3.07
2421 2466 5.649395 ACGCCAATTAATATGGATCTGATGG 59.351 40.000 16.30 6.13 40.56 3.51
2422 2467 5.882000 CGCCAATTAATATGGATCTGATGGA 59.118 40.000 16.30 0.00 40.56 3.41
2423 2468 6.037940 CGCCAATTAATATGGATCTGATGGAG 59.962 42.308 16.30 3.73 40.56 3.86
2424 2469 6.888632 GCCAATTAATATGGATCTGATGGAGT 59.111 38.462 16.30 0.00 40.56 3.85
2425 2470 8.049117 GCCAATTAATATGGATCTGATGGAGTA 58.951 37.037 16.30 0.00 40.56 2.59
2426 2471 9.964354 CCAATTAATATGGATCTGATGGAGTAA 57.036 33.333 9.73 0.00 40.56 2.24
2432 2477 9.736414 AATATGGATCTGATGGAGTAATTGAAG 57.264 33.333 0.00 0.00 0.00 3.02
2433 2478 6.566079 TGGATCTGATGGAGTAATTGAAGT 57.434 37.500 0.00 0.00 0.00 3.01
2434 2479 6.962182 TGGATCTGATGGAGTAATTGAAGTT 58.038 36.000 0.00 0.00 0.00 2.66
2435 2480 7.050377 TGGATCTGATGGAGTAATTGAAGTTC 58.950 38.462 0.00 0.00 0.00 3.01
2436 2481 7.092712 TGGATCTGATGGAGTAATTGAAGTTCT 60.093 37.037 4.17 0.00 0.00 3.01
2437 2482 8.424918 GGATCTGATGGAGTAATTGAAGTTCTA 58.575 37.037 4.17 0.00 0.00 2.10
2438 2483 9.823647 GATCTGATGGAGTAATTGAAGTTCTAA 57.176 33.333 4.17 0.00 0.00 2.10
2440 2485 9.823647 TCTGATGGAGTAATTGAAGTTCTAATC 57.176 33.333 4.17 0.00 0.00 1.75
2441 2486 8.964476 TGATGGAGTAATTGAAGTTCTAATCC 57.036 34.615 4.17 7.21 0.00 3.01
2442 2487 8.772250 TGATGGAGTAATTGAAGTTCTAATCCT 58.228 33.333 14.53 8.27 31.38 3.24
2464 2509 8.200364 TCCTATATTTGTACTAAAACAACGCC 57.800 34.615 0.00 0.00 39.02 5.68
2465 2510 7.823310 TCCTATATTTGTACTAAAACAACGCCA 59.177 33.333 0.00 0.00 39.02 5.69
2466 2511 8.452534 CCTATATTTGTACTAAAACAACGCCAA 58.547 33.333 0.00 0.00 39.02 4.52
2467 2512 9.997482 CTATATTTGTACTAAAACAACGCCAAT 57.003 29.630 0.00 0.00 39.02 3.16
2471 2516 7.911362 TTGTACTAAAACAACGCCAATTAAC 57.089 32.000 0.00 0.00 34.50 2.01
2472 2517 7.024340 TGTACTAAAACAACGCCAATTAACA 57.976 32.000 0.00 0.00 0.00 2.41
2473 2518 7.649973 TGTACTAAAACAACGCCAATTAACAT 58.350 30.769 0.00 0.00 0.00 2.71
2474 2519 8.136165 TGTACTAAAACAACGCCAATTAACATT 58.864 29.630 0.00 0.00 0.00 2.71
2475 2520 9.609950 GTACTAAAACAACGCCAATTAACATTA 57.390 29.630 0.00 0.00 0.00 1.90
2477 2522 9.699703 ACTAAAACAACGCCAATTAACATTAAT 57.300 25.926 0.00 0.00 34.98 1.40
2478 2523 9.950858 CTAAAACAACGCCAATTAACATTAATG 57.049 29.630 14.01 14.01 33.85 1.90
2479 2524 7.954788 AAACAACGCCAATTAACATTAATGT 57.045 28.000 15.47 15.47 44.20 2.71
2480 2525 9.477484 AAAACAACGCCAATTAACATTAATGTA 57.523 25.926 21.07 7.50 40.80 2.29
2481 2526 9.477484 AAACAACGCCAATTAACATTAATGTAA 57.523 25.926 21.07 14.90 40.80 2.41
2482 2527 8.682128 ACAACGCCAATTAACATTAATGTAAG 57.318 30.769 21.07 9.43 40.80 2.34
2483 2528 8.516234 ACAACGCCAATTAACATTAATGTAAGA 58.484 29.630 21.07 10.57 40.80 2.10
2484 2529 8.794406 CAACGCCAATTAACATTAATGTAAGAC 58.206 33.333 21.07 7.05 40.80 3.01
2485 2530 7.477494 ACGCCAATTAACATTAATGTAAGACC 58.523 34.615 21.07 6.54 40.80 3.85
2486 2531 7.338449 ACGCCAATTAACATTAATGTAAGACCT 59.662 33.333 21.07 7.42 40.80 3.85
2487 2532 8.188139 CGCCAATTAACATTAATGTAAGACCTT 58.812 33.333 21.07 6.71 40.80 3.50
2488 2533 9.869757 GCCAATTAACATTAATGTAAGACCTTT 57.130 29.630 21.07 6.00 40.80 3.11
2503 2548 9.754382 TGTAAGACCTTTTTAACACTAGTGTAG 57.246 33.333 28.13 20.01 44.13 2.74
2504 2549 9.755804 GTAAGACCTTTTTAACACTAGTGTAGT 57.244 33.333 28.13 16.41 44.13 2.73
2545 2590 2.822707 TGGGACAGAGGAGTACTACC 57.177 55.000 0.00 2.33 0.00 3.18
2546 2591 1.997791 TGGGACAGAGGAGTACTACCA 59.002 52.381 0.00 0.00 0.00 3.25
2547 2592 2.380932 TGGGACAGAGGAGTACTACCAA 59.619 50.000 0.00 0.00 0.00 3.67
2548 2593 3.025262 GGGACAGAGGAGTACTACCAAG 58.975 54.545 0.00 0.00 0.00 3.61
2549 2594 3.308976 GGGACAGAGGAGTACTACCAAGA 60.309 52.174 0.00 0.00 0.00 3.02
2550 2595 4.342359 GGACAGAGGAGTACTACCAAGAA 58.658 47.826 0.00 0.00 0.00 2.52
2551 2596 4.399934 GGACAGAGGAGTACTACCAAGAAG 59.600 50.000 0.00 0.00 0.00 2.85
2552 2597 5.000570 ACAGAGGAGTACTACCAAGAAGT 57.999 43.478 0.00 0.00 0.00 3.01
2553 2598 5.395611 ACAGAGGAGTACTACCAAGAAGTT 58.604 41.667 0.00 0.00 0.00 2.66
2554 2599 5.477637 ACAGAGGAGTACTACCAAGAAGTTC 59.522 44.000 0.00 0.00 0.00 3.01
2555 2600 5.477291 CAGAGGAGTACTACCAAGAAGTTCA 59.523 44.000 0.00 0.00 0.00 3.18
2556 2601 6.153680 CAGAGGAGTACTACCAAGAAGTTCAT 59.846 42.308 0.00 0.00 0.00 2.57
2557 2602 6.378848 AGAGGAGTACTACCAAGAAGTTCATC 59.621 42.308 0.00 0.00 0.00 2.92
2558 2603 5.422650 AGGAGTACTACCAAGAAGTTCATCC 59.577 44.000 0.00 0.00 0.00 3.51
2559 2604 5.422650 GGAGTACTACCAAGAAGTTCATCCT 59.577 44.000 5.50 0.00 0.00 3.24
2560 2605 6.406065 GGAGTACTACCAAGAAGTTCATCCTC 60.406 46.154 5.50 0.00 0.00 3.71
2561 2606 6.017192 AGTACTACCAAGAAGTTCATCCTCA 58.983 40.000 5.50 0.00 0.00 3.86
2562 2607 6.670027 AGTACTACCAAGAAGTTCATCCTCAT 59.330 38.462 5.50 0.00 0.00 2.90
2563 2608 6.380079 ACTACCAAGAAGTTCATCCTCATT 57.620 37.500 5.50 0.00 0.00 2.57
2564 2609 7.496346 ACTACCAAGAAGTTCATCCTCATTA 57.504 36.000 5.50 0.00 0.00 1.90
2565 2610 8.095452 ACTACCAAGAAGTTCATCCTCATTAT 57.905 34.615 5.50 0.00 0.00 1.28
2566 2611 8.207545 ACTACCAAGAAGTTCATCCTCATTATC 58.792 37.037 5.50 0.00 0.00 1.75
2567 2612 6.962182 ACCAAGAAGTTCATCCTCATTATCA 58.038 36.000 5.50 0.00 0.00 2.15
2568 2613 7.580910 ACCAAGAAGTTCATCCTCATTATCAT 58.419 34.615 5.50 0.00 0.00 2.45
2569 2614 8.057623 ACCAAGAAGTTCATCCTCATTATCATT 58.942 33.333 5.50 0.00 0.00 2.57
2570 2615 8.910944 CCAAGAAGTTCATCCTCATTATCATTT 58.089 33.333 5.50 0.00 0.00 2.32
2588 2633 7.766219 ATCATTTTTATCTCAACATGCAAGC 57.234 32.000 0.00 0.00 0.00 4.01
2589 2634 6.927416 TCATTTTTATCTCAACATGCAAGCT 58.073 32.000 0.00 0.00 0.00 3.74
2590 2635 6.809689 TCATTTTTATCTCAACATGCAAGCTG 59.190 34.615 0.00 0.00 0.00 4.24
2591 2636 5.710513 TTTTATCTCAACATGCAAGCTGT 57.289 34.783 0.00 0.00 0.00 4.40
2592 2637 4.952262 TTATCTCAACATGCAAGCTGTC 57.048 40.909 0.00 0.00 0.00 3.51
2593 2638 1.527034 TCTCAACATGCAAGCTGTCC 58.473 50.000 0.00 0.00 0.00 4.02
2594 2639 1.202794 TCTCAACATGCAAGCTGTCCA 60.203 47.619 0.00 0.00 0.00 4.02
2595 2640 0.953727 TCAACATGCAAGCTGTCCAC 59.046 50.000 0.00 0.00 0.00 4.02
2596 2641 0.386352 CAACATGCAAGCTGTCCACG 60.386 55.000 0.00 0.00 0.00 4.94
2597 2642 0.819259 AACATGCAAGCTGTCCACGT 60.819 50.000 0.00 0.00 0.00 4.49
2598 2643 1.230635 ACATGCAAGCTGTCCACGTC 61.231 55.000 0.00 0.00 0.00 4.34
2599 2644 1.071299 ATGCAAGCTGTCCACGTCA 59.929 52.632 0.00 0.00 0.00 4.35
2600 2645 0.952497 ATGCAAGCTGTCCACGTCAG 60.952 55.000 0.00 0.00 36.18 3.51
2605 2650 3.642755 CTGTCCACGTCAGCAACC 58.357 61.111 0.00 0.00 0.00 3.77
2606 2651 1.227527 CTGTCCACGTCAGCAACCA 60.228 57.895 0.00 0.00 0.00 3.67
2607 2652 0.603707 CTGTCCACGTCAGCAACCAT 60.604 55.000 0.00 0.00 0.00 3.55
2608 2653 0.884259 TGTCCACGTCAGCAACCATG 60.884 55.000 0.00 0.00 0.00 3.66
2621 2666 3.872511 CAACCATGCCATCTAAGCAAA 57.127 42.857 0.00 0.00 44.83 3.68
2622 2667 4.191033 CAACCATGCCATCTAAGCAAAA 57.809 40.909 0.00 0.00 44.83 2.44
2623 2668 4.567971 CAACCATGCCATCTAAGCAAAAA 58.432 39.130 0.00 0.00 44.83 1.94
2624 2669 4.192429 ACCATGCCATCTAAGCAAAAAC 57.808 40.909 0.00 0.00 44.83 2.43
2625 2670 3.834231 ACCATGCCATCTAAGCAAAAACT 59.166 39.130 0.00 0.00 44.83 2.66
2626 2671 4.178540 CCATGCCATCTAAGCAAAAACTG 58.821 43.478 0.00 0.00 44.83 3.16
2627 2672 4.082081 CCATGCCATCTAAGCAAAAACTGA 60.082 41.667 0.00 0.00 44.83 3.41
2628 2673 5.394883 CCATGCCATCTAAGCAAAAACTGAT 60.395 40.000 0.00 0.00 44.83 2.90
2629 2674 5.726980 TGCCATCTAAGCAAAAACTGATT 57.273 34.783 0.00 0.00 37.28 2.57
2630 2675 5.713025 TGCCATCTAAGCAAAAACTGATTC 58.287 37.500 0.00 0.00 37.28 2.52
2631 2676 5.105063 GCCATCTAAGCAAAAACTGATTCC 58.895 41.667 0.00 0.00 34.79 3.01
2632 2677 5.336690 GCCATCTAAGCAAAAACTGATTCCA 60.337 40.000 0.00 0.00 34.79 3.53
2633 2678 6.628844 GCCATCTAAGCAAAAACTGATTCCAT 60.629 38.462 0.00 0.00 34.79 3.41
2634 2679 7.325694 CCATCTAAGCAAAAACTGATTCCATT 58.674 34.615 0.00 0.00 34.79 3.16
2635 2680 7.820872 CCATCTAAGCAAAAACTGATTCCATTT 59.179 33.333 0.00 0.00 34.79 2.32
2636 2681 8.653338 CATCTAAGCAAAAACTGATTCCATTTG 58.347 33.333 0.00 0.00 34.79 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.458451 TCTTATGAGTTCTCTCTCCTCCA 57.542 43.478 1.53 0.00 40.98 3.86
1 2 6.783708 TTTCTTATGAGTTCTCTCTCCTCC 57.216 41.667 1.53 0.00 40.98 4.30
2 3 7.264947 CCTTTTCTTATGAGTTCTCTCTCCTC 58.735 42.308 1.53 0.00 40.98 3.71
3 4 6.351796 GCCTTTTCTTATGAGTTCTCTCTCCT 60.352 42.308 1.53 0.00 40.98 3.69
4 5 5.815222 GCCTTTTCTTATGAGTTCTCTCTCC 59.185 44.000 1.53 0.00 40.98 3.71
5 6 6.639563 AGCCTTTTCTTATGAGTTCTCTCTC 58.360 40.000 1.53 0.00 40.98 3.20
6 7 6.619329 AGCCTTTTCTTATGAGTTCTCTCT 57.381 37.500 1.53 0.00 40.98 3.10
7 8 6.652900 ACAAGCCTTTTCTTATGAGTTCTCTC 59.347 38.462 1.53 0.00 40.79 3.20
8 9 6.538263 ACAAGCCTTTTCTTATGAGTTCTCT 58.462 36.000 1.53 0.00 0.00 3.10
9 10 6.652900 AGACAAGCCTTTTCTTATGAGTTCTC 59.347 38.462 0.00 0.00 0.00 2.87
10 11 6.538263 AGACAAGCCTTTTCTTATGAGTTCT 58.462 36.000 0.00 0.00 0.00 3.01
11 12 6.809630 AGACAAGCCTTTTCTTATGAGTTC 57.190 37.500 0.00 0.00 0.00 3.01
12 13 7.001073 AGAAGACAAGCCTTTTCTTATGAGTT 58.999 34.615 5.86 0.00 29.54 3.01
13 14 6.538263 AGAAGACAAGCCTTTTCTTATGAGT 58.462 36.000 5.86 0.00 29.54 3.41
14 15 6.878389 AGAGAAGACAAGCCTTTTCTTATGAG 59.122 38.462 5.29 0.00 35.01 2.90
15 16 6.773638 AGAGAAGACAAGCCTTTTCTTATGA 58.226 36.000 5.29 0.00 35.01 2.15
16 17 7.446001 AAGAGAAGACAAGCCTTTTCTTATG 57.554 36.000 5.29 0.00 42.29 1.90
18 19 9.574516 AAATAAGAGAAGACAAGCCTTTTCTTA 57.425 29.630 5.86 14.67 45.53 2.10
19 20 8.470657 AAATAAGAGAAGACAAGCCTTTTCTT 57.529 30.769 5.57 5.57 44.56 2.52
20 21 9.574516 TTAAATAAGAGAAGACAAGCCTTTTCT 57.425 29.630 0.00 0.00 38.69 2.52
21 22 9.833182 CTTAAATAAGAGAAGACAAGCCTTTTC 57.167 33.333 0.00 0.00 35.33 2.29
22 23 9.574516 TCTTAAATAAGAGAAGACAAGCCTTTT 57.425 29.630 0.00 0.00 37.40 2.27
57 58 8.830201 AACATATTGTGCTAAGAGATCATCTC 57.170 34.615 6.55 6.55 43.70 2.75
58 59 9.270640 GAAACATATTGTGCTAAGAGATCATCT 57.729 33.333 0.00 0.00 41.27 2.90
59 60 9.049523 TGAAACATATTGTGCTAAGAGATCATC 57.950 33.333 0.00 0.00 0.00 2.92
60 61 8.834465 GTGAAACATATTGTGCTAAGAGATCAT 58.166 33.333 0.00 0.00 36.32 2.45
61 62 7.280876 GGTGAAACATATTGTGCTAAGAGATCA 59.719 37.037 0.00 0.00 39.98 2.92
62 63 7.280876 TGGTGAAACATATTGTGCTAAGAGATC 59.719 37.037 0.00 0.00 39.98 2.75
63 64 7.112122 TGGTGAAACATATTGTGCTAAGAGAT 58.888 34.615 0.00 0.00 39.98 2.75
64 65 6.472016 TGGTGAAACATATTGTGCTAAGAGA 58.528 36.000 0.00 0.00 39.98 3.10
65 66 6.741992 TGGTGAAACATATTGTGCTAAGAG 57.258 37.500 0.00 0.00 39.98 2.85
66 67 6.658816 ACATGGTGAAACATATTGTGCTAAGA 59.341 34.615 0.00 0.00 39.98 2.10
67 68 6.855836 ACATGGTGAAACATATTGTGCTAAG 58.144 36.000 0.00 0.00 39.98 2.18
68 69 6.832520 ACATGGTGAAACATATTGTGCTAA 57.167 33.333 0.00 0.00 39.98 3.09
69 70 6.832520 AACATGGTGAAACATATTGTGCTA 57.167 33.333 0.00 0.00 39.98 3.49
70 71 5.726980 AACATGGTGAAACATATTGTGCT 57.273 34.783 0.00 0.00 39.98 4.40
71 72 6.783892 AAAACATGGTGAAACATATTGTGC 57.216 33.333 0.00 0.00 39.98 4.57
72 73 8.924691 CCTAAAAACATGGTGAAACATATTGTG 58.075 33.333 0.00 0.00 39.98 3.33
73 74 8.865090 TCCTAAAAACATGGTGAAACATATTGT 58.135 29.630 0.00 0.00 39.98 2.71
74 75 9.703892 TTCCTAAAAACATGGTGAAACATATTG 57.296 29.630 0.00 0.00 39.98 1.90
78 79 8.034804 GCTATTCCTAAAAACATGGTGAAACAT 58.965 33.333 0.00 0.00 39.98 2.71
79 80 7.232534 AGCTATTCCTAAAAACATGGTGAAACA 59.767 33.333 0.00 0.00 39.98 2.83
80 81 7.602753 AGCTATTCCTAAAAACATGGTGAAAC 58.397 34.615 0.00 0.00 0.00 2.78
81 82 7.775053 AGCTATTCCTAAAAACATGGTGAAA 57.225 32.000 0.00 0.00 0.00 2.69
82 83 8.107095 ACTAGCTATTCCTAAAAACATGGTGAA 58.893 33.333 0.00 0.00 0.00 3.18
83 84 7.630082 ACTAGCTATTCCTAAAAACATGGTGA 58.370 34.615 0.00 0.00 0.00 4.02
84 85 7.865706 ACTAGCTATTCCTAAAAACATGGTG 57.134 36.000 0.00 0.00 0.00 4.17
97 98 9.157104 GCCTTATCTTCAATAACTAGCTATTCC 57.843 37.037 0.00 0.00 0.00 3.01
98 99 9.936759 AGCCTTATCTTCAATAACTAGCTATTC 57.063 33.333 0.00 0.00 0.00 1.75
102 103 9.148879 TCTTAGCCTTATCTTCAATAACTAGCT 57.851 33.333 0.00 0.00 0.00 3.32
103 104 9.418045 CTCTTAGCCTTATCTTCAATAACTAGC 57.582 37.037 0.00 0.00 0.00 3.42
106 107 9.995003 CATCTCTTAGCCTTATCTTCAATAACT 57.005 33.333 0.00 0.00 0.00 2.24
107 108 9.213799 CCATCTCTTAGCCTTATCTTCAATAAC 57.786 37.037 0.00 0.00 0.00 1.89
108 109 7.880195 GCCATCTCTTAGCCTTATCTTCAATAA 59.120 37.037 0.00 0.00 0.00 1.40
109 110 7.236432 AGCCATCTCTTAGCCTTATCTTCAATA 59.764 37.037 0.00 0.00 0.00 1.90
110 111 6.044171 AGCCATCTCTTAGCCTTATCTTCAAT 59.956 38.462 0.00 0.00 0.00 2.57
111 112 5.367937 AGCCATCTCTTAGCCTTATCTTCAA 59.632 40.000 0.00 0.00 0.00 2.69
112 113 4.904251 AGCCATCTCTTAGCCTTATCTTCA 59.096 41.667 0.00 0.00 0.00 3.02
113 114 5.011533 TGAGCCATCTCTTAGCCTTATCTTC 59.988 44.000 0.00 0.00 40.03 2.87
114 115 4.904251 TGAGCCATCTCTTAGCCTTATCTT 59.096 41.667 0.00 0.00 40.03 2.40
115 116 4.487804 TGAGCCATCTCTTAGCCTTATCT 58.512 43.478 0.00 0.00 40.03 1.98
116 117 4.881019 TGAGCCATCTCTTAGCCTTATC 57.119 45.455 0.00 0.00 40.03 1.75
117 118 5.072872 ACAATGAGCCATCTCTTAGCCTTAT 59.927 40.000 0.00 0.00 40.03 1.73
118 119 4.410228 ACAATGAGCCATCTCTTAGCCTTA 59.590 41.667 0.00 0.00 40.03 2.69
119 120 3.201708 ACAATGAGCCATCTCTTAGCCTT 59.798 43.478 0.00 0.00 40.03 4.35
120 121 2.776536 ACAATGAGCCATCTCTTAGCCT 59.223 45.455 0.00 0.00 40.03 4.58
121 122 3.205784 ACAATGAGCCATCTCTTAGCC 57.794 47.619 0.00 0.00 40.03 3.93
122 123 4.987912 GTCTACAATGAGCCATCTCTTAGC 59.012 45.833 0.00 0.00 40.03 3.09
123 124 6.154203 TGTCTACAATGAGCCATCTCTTAG 57.846 41.667 0.00 0.00 40.03 2.18
124 125 6.737720 ATGTCTACAATGAGCCATCTCTTA 57.262 37.500 0.00 0.00 40.03 2.10
125 126 5.627182 ATGTCTACAATGAGCCATCTCTT 57.373 39.130 0.00 0.00 40.03 2.85
126 127 5.627182 AATGTCTACAATGAGCCATCTCT 57.373 39.130 0.00 0.00 40.03 3.10
127 128 6.690194 AAAATGTCTACAATGAGCCATCTC 57.310 37.500 0.00 0.00 39.78 2.75
151 152 9.844790 CTTGCATGTAATTTAGAGATGACAAAA 57.155 29.630 0.00 0.00 0.00 2.44
152 153 9.230122 TCTTGCATGTAATTTAGAGATGACAAA 57.770 29.630 0.00 0.00 0.00 2.83
153 154 8.668353 GTCTTGCATGTAATTTAGAGATGACAA 58.332 33.333 0.00 0.00 0.00 3.18
154 155 8.043113 AGTCTTGCATGTAATTTAGAGATGACA 58.957 33.333 0.00 0.00 0.00 3.58
155 156 8.430801 AGTCTTGCATGTAATTTAGAGATGAC 57.569 34.615 0.00 0.00 0.00 3.06
196 197 9.543783 TGCACGTATATGTACAATGGTTTATAA 57.456 29.630 0.00 0.00 0.00 0.98
197 198 9.543783 TTGCACGTATATGTACAATGGTTTATA 57.456 29.630 6.64 0.00 0.00 0.98
198 199 8.439993 TTGCACGTATATGTACAATGGTTTAT 57.560 30.769 6.64 0.00 0.00 1.40
199 200 7.764901 TCTTGCACGTATATGTACAATGGTTTA 59.235 33.333 10.50 0.00 0.00 2.01
200 201 6.596106 TCTTGCACGTATATGTACAATGGTTT 59.404 34.615 10.50 0.00 0.00 3.27
201 202 6.110033 TCTTGCACGTATATGTACAATGGTT 58.890 36.000 10.50 0.00 0.00 3.67
202 203 5.666462 TCTTGCACGTATATGTACAATGGT 58.334 37.500 10.50 0.00 0.00 3.55
203 204 6.785488 ATCTTGCACGTATATGTACAATGG 57.215 37.500 10.50 2.15 0.00 3.16
207 208 9.535878 TGAAAATATCTTGCACGTATATGTACA 57.464 29.630 0.00 0.00 0.00 2.90
214 215 8.342634 GGTTGTATGAAAATATCTTGCACGTAT 58.657 33.333 0.00 0.00 29.60 3.06
215 216 7.334671 TGGTTGTATGAAAATATCTTGCACGTA 59.665 33.333 0.00 0.00 29.60 3.57
216 217 6.150307 TGGTTGTATGAAAATATCTTGCACGT 59.850 34.615 0.00 0.00 29.60 4.49
284 285 5.109903 GTCTGGATGCAACGGGTATATATC 58.890 45.833 0.00 0.00 0.00 1.63
374 375 4.328440 GCATATTCCGAGAGTGATATGTGC 59.672 45.833 0.00 0.00 0.00 4.57
430 431 5.466393 GCATGTGAAAATTTAACTGCTGGTT 59.534 36.000 9.11 0.00 41.54 3.67
444 445 1.614996 ATCGGGTGTGCATGTGAAAA 58.385 45.000 0.00 0.00 0.00 2.29
486 505 0.030235 GACAAAAACTGCACCGGTCC 59.970 55.000 2.59 0.00 0.00 4.46
510 529 2.094390 CGACATGTCCTCGGGAAGTTTA 60.094 50.000 20.03 0.00 31.38 2.01
532 551 4.568152 ACACTTGGTATTTTGCTGTGAC 57.432 40.909 0.00 0.00 0.00 3.67
579 599 2.753966 CCGGTCGAATGCAGGCAAG 61.754 63.158 0.00 0.00 0.00 4.01
609 629 4.475051 ACAACGGTAGCATGTTATGGTA 57.525 40.909 0.00 0.00 41.83 3.25
675 695 5.412594 TGATGAGCTGTTTTTACCATGAGAC 59.587 40.000 0.00 0.00 0.00 3.36
682 702 4.702131 AGGACATGATGAGCTGTTTTTACC 59.298 41.667 0.00 0.00 0.00 2.85
702 722 4.037222 TGGAAGCACAGGACAATATAGGA 58.963 43.478 0.00 0.00 0.00 2.94
784 804 0.771127 AGCCAGTGGACAAGCCTTTA 59.229 50.000 15.20 0.00 37.63 1.85
788 808 2.360475 GGAGCCAGTGGACAAGCC 60.360 66.667 15.20 1.74 37.10 4.35
808 828 5.221303 CCGGATCTTTTGGGATAAGTACGTA 60.221 44.000 0.00 0.00 0.00 3.57
917 941 3.461773 GAGGAGGCGGTGCAGCTA 61.462 66.667 14.92 0.00 37.29 3.32
919 943 4.828925 GAGAGGAGGCGGTGCAGC 62.829 72.222 5.64 5.64 0.00 5.25
920 944 4.154347 GGAGAGGAGGCGGTGCAG 62.154 72.222 0.00 0.00 0.00 4.41
921 945 2.589610 ATAGGAGAGGAGGCGGTGCA 62.590 60.000 0.00 0.00 0.00 4.57
922 946 0.539901 TATAGGAGAGGAGGCGGTGC 60.540 60.000 0.00 0.00 0.00 5.01
923 947 2.223803 ATATAGGAGAGGAGGCGGTG 57.776 55.000 0.00 0.00 0.00 4.94
924 948 4.087907 GTTTATATAGGAGAGGAGGCGGT 58.912 47.826 0.00 0.00 0.00 5.68
926 950 4.082136 GGTGTTTATATAGGAGAGGAGGCG 60.082 50.000 0.00 0.00 0.00 5.52
927 951 4.838986 TGGTGTTTATATAGGAGAGGAGGC 59.161 45.833 0.00 0.00 0.00 4.70
1045 1076 4.033776 CAGGGCGGAGAAGGGCAA 62.034 66.667 0.00 0.00 0.00 4.52
1642 1673 1.762370 TGTTGAGACCTGAGAACTGCA 59.238 47.619 0.00 0.00 0.00 4.41
1648 1679 2.035961 CGACCTTTGTTGAGACCTGAGA 59.964 50.000 0.00 0.00 0.00 3.27
1649 1680 2.224066 ACGACCTTTGTTGAGACCTGAG 60.224 50.000 0.00 0.00 0.00 3.35
1650 1681 1.760613 ACGACCTTTGTTGAGACCTGA 59.239 47.619 0.00 0.00 0.00 3.86
1651 1682 2.135933 GACGACCTTTGTTGAGACCTG 58.864 52.381 0.00 0.00 0.00 4.00
1652 1683 1.269621 CGACGACCTTTGTTGAGACCT 60.270 52.381 0.00 0.00 0.00 3.85
1653 1684 1.137513 CGACGACCTTTGTTGAGACC 58.862 55.000 0.00 0.00 0.00 3.85
1654 1685 1.521423 CACGACGACCTTTGTTGAGAC 59.479 52.381 0.00 0.00 0.00 3.36
1660 1691 0.529119 GACACCACGACGACCTTTGT 60.529 55.000 0.00 0.00 0.00 2.83
1666 1697 3.097728 CGCTGACACCACGACGAC 61.098 66.667 0.00 0.00 0.00 4.34
1827 1860 6.638873 GGTTGTGTACATCAATCGAGATAGAG 59.361 42.308 0.00 0.00 0.00 2.43
1853 1886 7.369542 CGTTTCGGAAAAACTTTGCAATAAAAG 59.630 33.333 4.46 0.00 41.91 2.27
1857 1890 5.579718 TCGTTTCGGAAAAACTTTGCAATA 58.420 33.333 4.46 0.00 0.00 1.90
1862 1895 5.171337 CACTCATCGTTTCGGAAAAACTTTG 59.829 40.000 4.46 0.22 0.00 2.77
1868 1901 3.246699 GTGACACTCATCGTTTCGGAAAA 59.753 43.478 4.46 0.00 0.00 2.29
1869 1902 2.798283 GTGACACTCATCGTTTCGGAAA 59.202 45.455 0.00 0.00 0.00 3.13
1870 1903 2.223852 TGTGACACTCATCGTTTCGGAA 60.224 45.455 7.20 0.00 0.00 4.30
1871 1904 1.338655 TGTGACACTCATCGTTTCGGA 59.661 47.619 7.20 0.00 0.00 4.55
1872 1905 1.778334 TGTGACACTCATCGTTTCGG 58.222 50.000 7.20 0.00 0.00 4.30
1873 1906 2.731451 ACATGTGACACTCATCGTTTCG 59.269 45.455 7.20 0.00 0.00 3.46
1874 1907 3.494626 ACACATGTGACACTCATCGTTTC 59.505 43.478 31.94 0.00 0.00 2.78
1875 1908 3.466836 ACACATGTGACACTCATCGTTT 58.533 40.909 31.94 1.65 0.00 3.60
1876 1909 3.111853 ACACATGTGACACTCATCGTT 57.888 42.857 31.94 1.87 0.00 3.85
1877 1910 2.820059 ACACATGTGACACTCATCGT 57.180 45.000 31.94 2.44 0.00 3.73
1893 1926 2.949790 CCAGAGTGGTTTGTGGCACAC 61.950 57.143 21.95 9.95 46.58 3.82
1894 1927 0.751277 CCAGAGTGGTTTGTGGCACA 60.751 55.000 17.96 17.96 31.35 4.57
1895 1928 2.032981 CCAGAGTGGTTTGTGGCAC 58.967 57.895 11.55 11.55 31.35 5.01
1896 1929 4.577152 CCAGAGTGGTTTGTGGCA 57.423 55.556 0.00 0.00 31.35 4.92
1898 1931 0.468029 AAGGCCAGAGTGGTTTGTGG 60.468 55.000 5.01 0.00 40.46 4.17
1899 1932 0.670162 CAAGGCCAGAGTGGTTTGTG 59.330 55.000 5.01 0.00 40.46 3.33
1900 1933 0.550914 TCAAGGCCAGAGTGGTTTGT 59.449 50.000 5.01 0.00 40.46 2.83
1901 1934 0.954452 GTCAAGGCCAGAGTGGTTTG 59.046 55.000 5.01 0.00 40.46 2.93
1902 1935 0.846693 AGTCAAGGCCAGAGTGGTTT 59.153 50.000 5.01 0.00 40.46 3.27
1903 1936 0.846693 AAGTCAAGGCCAGAGTGGTT 59.153 50.000 5.01 0.00 40.46 3.67
1904 1937 0.846693 AAAGTCAAGGCCAGAGTGGT 59.153 50.000 5.01 0.00 40.46 4.16
1905 1938 1.986882 AAAAGTCAAGGCCAGAGTGG 58.013 50.000 5.01 0.00 41.55 4.00
1993 2026 9.606631 TTTGGTTATCAAGCATAACAACTTTTT 57.393 25.926 7.48 0.00 46.30 1.94
1994 2027 9.260002 CTTTGGTTATCAAGCATAACAACTTTT 57.740 29.630 7.48 0.00 46.30 2.27
1995 2028 8.421002 ACTTTGGTTATCAAGCATAACAACTTT 58.579 29.630 7.48 0.00 46.30 2.66
1996 2029 7.951591 ACTTTGGTTATCAAGCATAACAACTT 58.048 30.769 7.48 0.00 46.30 2.66
1997 2030 7.524717 ACTTTGGTTATCAAGCATAACAACT 57.475 32.000 7.48 0.00 46.30 3.16
1998 2031 7.651704 ACAACTTTGGTTATCAAGCATAACAAC 59.348 33.333 7.48 0.00 46.30 3.32
1999 2032 7.721402 ACAACTTTGGTTATCAAGCATAACAA 58.279 30.769 7.48 0.00 46.30 2.83
2000 2033 7.013750 TGACAACTTTGGTTATCAAGCATAACA 59.986 33.333 7.48 0.00 46.30 2.41
2001 2034 7.367285 TGACAACTTTGGTTATCAAGCATAAC 58.633 34.615 0.00 0.00 44.48 1.89
2002 2035 7.517614 TGACAACTTTGGTTATCAAGCATAA 57.482 32.000 0.00 0.00 36.14 1.90
2003 2036 7.148086 GGATGACAACTTTGGTTATCAAGCATA 60.148 37.037 0.00 0.00 41.36 3.14
2004 2037 6.350445 GGATGACAACTTTGGTTATCAAGCAT 60.350 38.462 0.00 0.00 41.36 3.79
2005 2038 5.048083 GGATGACAACTTTGGTTATCAAGCA 60.048 40.000 0.00 0.00 41.36 3.91
2006 2039 5.183904 AGGATGACAACTTTGGTTATCAAGC 59.816 40.000 0.00 0.00 41.36 4.01
2007 2040 6.402550 CGAGGATGACAACTTTGGTTATCAAG 60.403 42.308 0.00 0.00 41.36 3.02
2008 2041 5.411361 CGAGGATGACAACTTTGGTTATCAA 59.589 40.000 0.00 0.00 41.36 2.57
2009 2042 4.935205 CGAGGATGACAACTTTGGTTATCA 59.065 41.667 0.00 0.00 42.09 2.15
2010 2043 4.201822 GCGAGGATGACAACTTTGGTTATC 60.202 45.833 0.00 0.00 33.88 1.75
2011 2044 3.689649 GCGAGGATGACAACTTTGGTTAT 59.310 43.478 0.00 0.00 33.88 1.89
2012 2045 3.071479 GCGAGGATGACAACTTTGGTTA 58.929 45.455 0.00 0.00 33.88 2.85
2013 2046 1.880027 GCGAGGATGACAACTTTGGTT 59.120 47.619 0.00 0.00 35.86 3.67
2014 2047 1.202758 TGCGAGGATGACAACTTTGGT 60.203 47.619 0.00 0.00 0.00 3.67
2015 2048 1.522668 TGCGAGGATGACAACTTTGG 58.477 50.000 0.00 0.00 0.00 3.28
2016 2049 2.743664 TGATGCGAGGATGACAACTTTG 59.256 45.455 0.00 0.00 0.00 2.77
2017 2050 3.057969 TGATGCGAGGATGACAACTTT 57.942 42.857 0.00 0.00 0.00 2.66
2018 2051 2.768253 TGATGCGAGGATGACAACTT 57.232 45.000 0.00 0.00 0.00 2.66
2019 2052 2.996249 ATGATGCGAGGATGACAACT 57.004 45.000 0.00 0.00 0.00 3.16
2020 2053 5.065218 AGTTTAATGATGCGAGGATGACAAC 59.935 40.000 0.00 0.00 0.00 3.32
2021 2054 5.185454 AGTTTAATGATGCGAGGATGACAA 58.815 37.500 0.00 0.00 0.00 3.18
2022 2055 4.769688 AGTTTAATGATGCGAGGATGACA 58.230 39.130 0.00 0.00 0.00 3.58
2023 2056 5.065218 ACAAGTTTAATGATGCGAGGATGAC 59.935 40.000 0.00 0.00 0.00 3.06
2024 2057 5.185454 ACAAGTTTAATGATGCGAGGATGA 58.815 37.500 0.00 0.00 0.00 2.92
2025 2058 5.065090 TGACAAGTTTAATGATGCGAGGATG 59.935 40.000 0.00 0.00 0.00 3.51
2026 2059 5.185454 TGACAAGTTTAATGATGCGAGGAT 58.815 37.500 0.00 0.00 0.00 3.24
2027 2060 4.574892 TGACAAGTTTAATGATGCGAGGA 58.425 39.130 0.00 0.00 0.00 3.71
2028 2061 4.944962 TGACAAGTTTAATGATGCGAGG 57.055 40.909 0.00 0.00 0.00 4.63
2029 2062 8.894409 TTTTATGACAAGTTTAATGATGCGAG 57.106 30.769 0.00 0.00 0.00 5.03
2056 2089 9.653287 ACACGAACATATGATATTTCCGAATAT 57.347 29.630 10.38 0.00 40.34 1.28
2057 2090 9.135843 GACACGAACATATGATATTTCCGAATA 57.864 33.333 10.38 0.00 32.56 1.75
2058 2091 7.655732 TGACACGAACATATGATATTTCCGAAT 59.344 33.333 10.38 0.00 0.00 3.34
2059 2092 6.981559 TGACACGAACATATGATATTTCCGAA 59.018 34.615 10.38 0.00 0.00 4.30
2060 2093 6.419710 GTGACACGAACATATGATATTTCCGA 59.580 38.462 10.38 0.00 0.00 4.55
2061 2094 6.200097 TGTGACACGAACATATGATATTTCCG 59.800 38.462 10.38 0.00 0.00 4.30
2062 2095 7.477144 TGTGACACGAACATATGATATTTCC 57.523 36.000 10.38 0.00 0.00 3.13
2067 2100 9.801873 CCATATATGTGACACGAACATATGATA 57.198 33.333 10.38 5.16 46.03 2.15
2068 2101 7.278646 GCCATATATGTGACACGAACATATGAT 59.721 37.037 10.38 0.00 46.03 2.45
2069 2102 6.589907 GCCATATATGTGACACGAACATATGA 59.410 38.462 10.38 4.65 46.03 2.15
2070 2103 6.368516 TGCCATATATGTGACACGAACATATG 59.631 38.462 15.81 0.00 46.03 1.78
2072 2105 5.694458 GTGCCATATATGTGACACGAACATA 59.306 40.000 11.73 0.00 42.92 2.29
2073 2106 4.511454 GTGCCATATATGTGACACGAACAT 59.489 41.667 11.73 0.00 41.14 2.71
2074 2107 3.868661 GTGCCATATATGTGACACGAACA 59.131 43.478 11.73 0.00 0.00 3.18
2075 2108 4.119862 AGTGCCATATATGTGACACGAAC 58.880 43.478 12.05 6.37 33.36 3.95
2076 2109 4.400529 AGTGCCATATATGTGACACGAA 57.599 40.909 12.05 0.00 33.36 3.85
2077 2110 4.400529 AAGTGCCATATATGTGACACGA 57.599 40.909 12.05 0.00 33.36 4.35
2078 2111 5.925969 TGATAAGTGCCATATATGTGACACG 59.074 40.000 12.05 3.61 33.36 4.49
2079 2112 6.369890 CCTGATAAGTGCCATATATGTGACAC 59.630 42.308 10.30 10.30 0.00 3.67
2080 2113 6.269769 TCCTGATAAGTGCCATATATGTGACA 59.730 38.462 11.73 4.39 0.00 3.58
2081 2114 6.701340 TCCTGATAAGTGCCATATATGTGAC 58.299 40.000 11.73 7.46 0.00 3.67
2082 2115 6.933514 TCCTGATAAGTGCCATATATGTGA 57.066 37.500 11.73 0.00 0.00 3.58
2083 2116 7.563020 AGATCCTGATAAGTGCCATATATGTG 58.437 38.462 11.73 4.67 0.00 3.21
2084 2117 7.746243 AGATCCTGATAAGTGCCATATATGT 57.254 36.000 11.73 0.00 0.00 2.29
2089 2122 9.866655 AAAAATTAGATCCTGATAAGTGCCATA 57.133 29.630 0.00 0.00 0.00 2.74
2090 2123 8.773033 AAAAATTAGATCCTGATAAGTGCCAT 57.227 30.769 0.00 0.00 0.00 4.40
2116 2149 6.847289 GTCGCGTTTTCTTTTTAGTTCACATA 59.153 34.615 5.77 0.00 0.00 2.29
2124 2157 3.942739 TGTGGTCGCGTTTTCTTTTTAG 58.057 40.909 5.77 0.00 0.00 1.85
2131 2164 1.003331 TGTTCATGTGGTCGCGTTTTC 60.003 47.619 5.77 0.00 0.00 2.29
2132 2165 1.018148 TGTTCATGTGGTCGCGTTTT 58.982 45.000 5.77 0.00 0.00 2.43
2137 2170 1.438651 TAGCTTGTTCATGTGGTCGC 58.561 50.000 0.00 0.00 0.00 5.19
2138 2171 4.682787 TCTATAGCTTGTTCATGTGGTCG 58.317 43.478 0.00 0.00 0.00 4.79
2140 2173 5.939764 TCTCTATAGCTTGTTCATGTGGT 57.060 39.130 0.00 0.00 0.00 4.16
2167 2200 8.133627 GGATTAGTAACGCACTAGAGATTTACA 58.866 37.037 0.00 0.00 40.83 2.41
2178 2211 5.277857 AGCAATAGGATTAGTAACGCACT 57.722 39.130 0.00 0.00 41.62 4.40
2211 2244 5.118510 CACGGGTTTTATTCAACTGATTTGC 59.881 40.000 0.00 0.00 34.88 3.68
2218 2251 3.566742 GGTCACACGGGTTTTATTCAACT 59.433 43.478 0.00 0.00 0.00 3.16
2221 2254 3.210232 TGGTCACACGGGTTTTATTCA 57.790 42.857 0.00 0.00 0.00 2.57
2244 2277 4.722526 TTTCTTCTGGACTCCATTTGGA 57.277 40.909 0.00 0.00 43.08 3.53
2251 2284 5.222079 AGAGTTCTTTTCTTCTGGACTCC 57.778 43.478 0.00 0.00 0.00 3.85
2253 2286 6.240549 TCAAGAGTTCTTTTCTTCTGGACT 57.759 37.500 0.00 0.00 32.75 3.85
2254 2287 5.049749 GCTCAAGAGTTCTTTTCTTCTGGAC 60.050 44.000 0.00 0.00 32.75 4.02
2255 2288 5.059833 GCTCAAGAGTTCTTTTCTTCTGGA 58.940 41.667 0.00 0.00 32.75 3.86
2257 2290 5.998454 TGCTCAAGAGTTCTTTTCTTCTG 57.002 39.130 0.00 0.00 32.75 3.02
2273 2316 2.076100 CTTTAGCGTGTGGATGCTCAA 58.924 47.619 0.00 0.00 43.77 3.02
2297 2340 0.896019 ACTAGTCAGGTGCGCAGTCT 60.896 55.000 12.22 9.18 0.00 3.24
2301 2344 1.320344 CCCTACTAGTCAGGTGCGCA 61.320 60.000 5.66 5.66 0.00 6.09
2302 2345 1.035932 TCCCTACTAGTCAGGTGCGC 61.036 60.000 0.00 0.00 0.00 6.09
2304 2347 1.481363 GGTTCCCTACTAGTCAGGTGC 59.519 57.143 0.00 0.00 0.00 5.01
2308 2351 3.133003 CCACATGGTTCCCTACTAGTCAG 59.867 52.174 0.00 0.00 0.00 3.51
2310 2353 3.371965 TCCACATGGTTCCCTACTAGTC 58.628 50.000 0.00 0.00 36.34 2.59
2311 2354 3.484953 TCCACATGGTTCCCTACTAGT 57.515 47.619 0.00 0.00 36.34 2.57
2347 2392 4.391830 GCGGCAATTAATATGGATCGAAGA 59.608 41.667 0.00 0.00 45.75 2.87
2350 2395 3.684305 CAGCGGCAATTAATATGGATCGA 59.316 43.478 1.45 0.00 0.00 3.59
2353 2398 3.424703 AGCAGCGGCAATTAATATGGAT 58.575 40.909 12.44 0.00 44.61 3.41
2354 2399 2.862541 AGCAGCGGCAATTAATATGGA 58.137 42.857 12.44 0.00 44.61 3.41
2355 2400 3.648339 AAGCAGCGGCAATTAATATGG 57.352 42.857 12.44 0.00 44.61 2.74
2356 2401 5.762045 ACTAAAGCAGCGGCAATTAATATG 58.238 37.500 12.44 1.51 44.61 1.78
2357 2402 7.687941 ATACTAAAGCAGCGGCAATTAATAT 57.312 32.000 12.44 7.02 44.61 1.28
2358 2403 8.786826 ATATACTAAAGCAGCGGCAATTAATA 57.213 30.769 12.44 4.96 44.61 0.98
2359 2404 7.687941 ATATACTAAAGCAGCGGCAATTAAT 57.312 32.000 12.44 2.76 44.61 1.40
2360 2405 7.504924 AATATACTAAAGCAGCGGCAATTAA 57.495 32.000 12.44 0.00 44.61 1.40
2361 2406 7.012894 ACAAATATACTAAAGCAGCGGCAATTA 59.987 33.333 12.44 9.05 44.61 1.40
2362 2407 6.183360 ACAAATATACTAAAGCAGCGGCAATT 60.183 34.615 12.44 8.32 44.61 2.32
2363 2408 5.299279 ACAAATATACTAAAGCAGCGGCAAT 59.701 36.000 12.44 1.25 44.61 3.56
2364 2409 4.638421 ACAAATATACTAAAGCAGCGGCAA 59.362 37.500 12.44 0.00 44.61 4.52
2365 2410 4.196193 ACAAATATACTAAAGCAGCGGCA 58.804 39.130 12.44 0.00 44.61 5.69
2366 2411 4.813296 ACAAATATACTAAAGCAGCGGC 57.187 40.909 0.00 0.00 41.61 6.53
2367 2412 8.583810 TTAGTACAAATATACTAAAGCAGCGG 57.416 34.615 0.00 0.00 42.16 5.52
2376 2421 9.650539 TGGCGTTGTTTTAGTACAAATATACTA 57.349 29.630 0.00 0.00 39.54 1.82
2377 2422 8.550710 TGGCGTTGTTTTAGTACAAATATACT 57.449 30.769 0.00 0.00 39.54 2.12
2378 2423 9.777575 ATTGGCGTTGTTTTAGTACAAATATAC 57.222 29.630 0.00 0.00 39.54 1.47
2382 2427 9.699703 ATTAATTGGCGTTGTTTTAGTACAAAT 57.300 25.926 0.00 0.00 39.54 2.32
2385 2430 9.776158 CATATTAATTGGCGTTGTTTTAGTACA 57.224 29.630 0.00 0.00 0.00 2.90
2386 2431 9.228636 CCATATTAATTGGCGTTGTTTTAGTAC 57.771 33.333 0.00 0.00 0.00 2.73
2387 2432 9.175312 TCCATATTAATTGGCGTTGTTTTAGTA 57.825 29.630 10.23 0.00 34.06 1.82
2388 2433 8.057536 TCCATATTAATTGGCGTTGTTTTAGT 57.942 30.769 10.23 0.00 34.06 2.24
2389 2434 9.180678 GATCCATATTAATTGGCGTTGTTTTAG 57.819 33.333 10.23 0.00 34.06 1.85
2390 2435 8.908903 AGATCCATATTAATTGGCGTTGTTTTA 58.091 29.630 10.23 0.00 34.06 1.52
2391 2436 7.706179 CAGATCCATATTAATTGGCGTTGTTTT 59.294 33.333 10.23 0.00 34.06 2.43
2392 2437 7.068103 TCAGATCCATATTAATTGGCGTTGTTT 59.932 33.333 10.23 0.00 34.06 2.83
2393 2438 6.545666 TCAGATCCATATTAATTGGCGTTGTT 59.454 34.615 10.23 0.00 34.06 2.83
2394 2439 6.061441 TCAGATCCATATTAATTGGCGTTGT 58.939 36.000 10.23 0.00 34.06 3.32
2395 2440 6.558771 TCAGATCCATATTAATTGGCGTTG 57.441 37.500 10.23 8.50 34.06 4.10
2396 2441 6.151648 CCATCAGATCCATATTAATTGGCGTT 59.848 38.462 10.23 1.56 34.06 4.84
2397 2442 5.649395 CCATCAGATCCATATTAATTGGCGT 59.351 40.000 10.23 4.17 34.06 5.68
2398 2443 5.882000 TCCATCAGATCCATATTAATTGGCG 59.118 40.000 10.23 0.00 34.06 5.69
2399 2444 6.888632 ACTCCATCAGATCCATATTAATTGGC 59.111 38.462 10.23 0.00 34.06 4.52
2400 2445 9.964354 TTACTCCATCAGATCCATATTAATTGG 57.036 33.333 0.00 1.98 35.45 3.16
2406 2451 9.736414 CTTCAATTACTCCATCAGATCCATATT 57.264 33.333 0.00 0.00 0.00 1.28
2407 2452 8.888419 ACTTCAATTACTCCATCAGATCCATAT 58.112 33.333 0.00 0.00 0.00 1.78
2408 2453 8.267620 ACTTCAATTACTCCATCAGATCCATA 57.732 34.615 0.00 0.00 0.00 2.74
2409 2454 7.146715 ACTTCAATTACTCCATCAGATCCAT 57.853 36.000 0.00 0.00 0.00 3.41
2410 2455 6.566079 ACTTCAATTACTCCATCAGATCCA 57.434 37.500 0.00 0.00 0.00 3.41
2411 2456 7.278875 AGAACTTCAATTACTCCATCAGATCC 58.721 38.462 0.00 0.00 0.00 3.36
2412 2457 9.823647 TTAGAACTTCAATTACTCCATCAGATC 57.176 33.333 0.00 0.00 0.00 2.75
2414 2459 9.823647 GATTAGAACTTCAATTACTCCATCAGA 57.176 33.333 0.00 0.00 0.00 3.27
2415 2460 9.050601 GGATTAGAACTTCAATTACTCCATCAG 57.949 37.037 0.00 0.00 0.00 2.90
2416 2461 8.772250 AGGATTAGAACTTCAATTACTCCATCA 58.228 33.333 0.00 0.00 0.00 3.07
2438 2483 8.833493 GGCGTTGTTTTAGTACAAATATAGGAT 58.167 33.333 0.00 0.00 39.54 3.24
2439 2484 7.823310 TGGCGTTGTTTTAGTACAAATATAGGA 59.177 33.333 0.00 0.00 39.54 2.94
2440 2485 7.976826 TGGCGTTGTTTTAGTACAAATATAGG 58.023 34.615 0.00 0.00 39.54 2.57
2441 2486 9.997482 ATTGGCGTTGTTTTAGTACAAATATAG 57.003 29.630 0.00 0.00 39.54 1.31
2445 2490 8.970293 GTTAATTGGCGTTGTTTTAGTACAAAT 58.030 29.630 0.00 0.00 39.54 2.32
2446 2491 7.972277 TGTTAATTGGCGTTGTTTTAGTACAAA 59.028 29.630 0.00 0.00 39.54 2.83
2447 2492 7.478322 TGTTAATTGGCGTTGTTTTAGTACAA 58.522 30.769 0.00 0.00 35.75 2.41
2448 2493 7.024340 TGTTAATTGGCGTTGTTTTAGTACA 57.976 32.000 0.00 0.00 0.00 2.90
2449 2494 8.510132 AATGTTAATTGGCGTTGTTTTAGTAC 57.490 30.769 0.00 0.00 0.00 2.73
2451 2496 9.699703 ATTAATGTTAATTGGCGTTGTTTTAGT 57.300 25.926 0.00 0.00 29.40 2.24
2452 2497 9.950858 CATTAATGTTAATTGGCGTTGTTTTAG 57.049 29.630 7.32 0.00 31.28 1.85
2453 2498 9.477484 ACATTAATGTTAATTGGCGTTGTTTTA 57.523 25.926 15.47 0.00 37.90 1.52
2454 2499 8.371770 ACATTAATGTTAATTGGCGTTGTTTT 57.628 26.923 15.47 0.00 37.90 2.43
2455 2500 7.954788 ACATTAATGTTAATTGGCGTTGTTT 57.045 28.000 15.47 0.00 37.90 2.83
2456 2501 9.134734 CTTACATTAATGTTAATTGGCGTTGTT 57.865 29.630 25.31 0.00 41.97 2.83
2457 2502 8.516234 TCTTACATTAATGTTAATTGGCGTTGT 58.484 29.630 25.31 0.25 41.97 3.32
2458 2503 8.794406 GTCTTACATTAATGTTAATTGGCGTTG 58.206 33.333 25.31 2.90 41.97 4.10
2459 2504 7.971722 GGTCTTACATTAATGTTAATTGGCGTT 59.028 33.333 25.31 0.00 41.97 4.84
2460 2505 7.338449 AGGTCTTACATTAATGTTAATTGGCGT 59.662 33.333 25.31 11.58 41.97 5.68
2461 2506 7.703328 AGGTCTTACATTAATGTTAATTGGCG 58.297 34.615 25.31 4.89 41.97 5.69
2462 2507 9.869757 AAAGGTCTTACATTAATGTTAATTGGC 57.130 29.630 25.31 12.50 41.97 4.52
2475 2520 9.623000 ACACTAGTGTTAAAAAGGTCTTACATT 57.377 29.630 22.95 0.00 41.83 2.71
2477 2522 9.754382 CTACACTAGTGTTAAAAAGGTCTTACA 57.246 33.333 32.15 8.63 41.83 2.41
2478 2523 9.755804 ACTACACTAGTGTTAAAAAGGTCTTAC 57.244 33.333 32.15 0.00 41.83 2.34
2509 2554 6.938030 TCTGTCCCATAATGTAAGACGTTTTT 59.062 34.615 0.00 0.00 0.00 1.94
2510 2555 6.469410 TCTGTCCCATAATGTAAGACGTTTT 58.531 36.000 0.00 0.00 0.00 2.43
2511 2556 6.045072 TCTGTCCCATAATGTAAGACGTTT 57.955 37.500 0.00 0.00 0.00 3.60
2512 2557 5.395324 CCTCTGTCCCATAATGTAAGACGTT 60.395 44.000 0.00 0.00 0.00 3.99
2513 2558 4.099573 CCTCTGTCCCATAATGTAAGACGT 59.900 45.833 0.00 0.00 0.00 4.34
2514 2559 4.341235 TCCTCTGTCCCATAATGTAAGACG 59.659 45.833 0.00 0.00 0.00 4.18
2515 2560 5.364157 ACTCCTCTGTCCCATAATGTAAGAC 59.636 44.000 0.00 0.00 0.00 3.01
2516 2561 5.529289 ACTCCTCTGTCCCATAATGTAAGA 58.471 41.667 0.00 0.00 0.00 2.10
2517 2562 5.878406 ACTCCTCTGTCCCATAATGTAAG 57.122 43.478 0.00 0.00 0.00 2.34
2518 2563 6.441222 AGTACTCCTCTGTCCCATAATGTAA 58.559 40.000 0.00 0.00 0.00 2.41
2519 2564 6.027025 AGTACTCCTCTGTCCCATAATGTA 57.973 41.667 0.00 0.00 0.00 2.29
2520 2565 4.884961 AGTACTCCTCTGTCCCATAATGT 58.115 43.478 0.00 0.00 0.00 2.71
2521 2566 5.244178 GGTAGTACTCCTCTGTCCCATAATG 59.756 48.000 0.00 0.00 0.00 1.90
2522 2567 5.103215 TGGTAGTACTCCTCTGTCCCATAAT 60.103 44.000 0.00 0.00 0.00 1.28
2523 2568 4.231195 TGGTAGTACTCCTCTGTCCCATAA 59.769 45.833 0.00 0.00 0.00 1.90
2524 2569 3.789840 TGGTAGTACTCCTCTGTCCCATA 59.210 47.826 0.00 0.00 0.00 2.74
2525 2570 2.585900 TGGTAGTACTCCTCTGTCCCAT 59.414 50.000 0.00 0.00 0.00 4.00
2526 2571 1.997791 TGGTAGTACTCCTCTGTCCCA 59.002 52.381 0.00 0.00 0.00 4.37
2527 2572 2.822707 TGGTAGTACTCCTCTGTCCC 57.177 55.000 0.00 0.00 0.00 4.46
2528 2573 3.965694 TCTTGGTAGTACTCCTCTGTCC 58.034 50.000 0.00 0.00 0.00 4.02
2529 2574 5.011586 ACTTCTTGGTAGTACTCCTCTGTC 58.988 45.833 0.00 0.00 0.00 3.51
2530 2575 5.000570 ACTTCTTGGTAGTACTCCTCTGT 57.999 43.478 0.00 0.00 0.00 3.41
2531 2576 5.477291 TGAACTTCTTGGTAGTACTCCTCTG 59.523 44.000 0.00 0.00 0.00 3.35
2532 2577 5.642165 TGAACTTCTTGGTAGTACTCCTCT 58.358 41.667 0.00 0.00 0.00 3.69
2533 2578 5.979288 TGAACTTCTTGGTAGTACTCCTC 57.021 43.478 0.00 0.00 0.00 3.71
2534 2579 5.422650 GGATGAACTTCTTGGTAGTACTCCT 59.577 44.000 0.00 0.00 0.00 3.69
2535 2580 5.422650 AGGATGAACTTCTTGGTAGTACTCC 59.577 44.000 0.00 1.20 0.00 3.85
2536 2581 6.153000 TGAGGATGAACTTCTTGGTAGTACTC 59.847 42.308 0.00 0.00 0.00 2.59
2537 2582 6.017192 TGAGGATGAACTTCTTGGTAGTACT 58.983 40.000 0.00 0.00 0.00 2.73
2538 2583 6.282199 TGAGGATGAACTTCTTGGTAGTAC 57.718 41.667 0.00 0.00 0.00 2.73
2539 2584 7.496346 AATGAGGATGAACTTCTTGGTAGTA 57.504 36.000 0.00 0.00 0.00 1.82
2540 2585 6.380079 AATGAGGATGAACTTCTTGGTAGT 57.620 37.500 0.00 0.00 0.00 2.73
2541 2586 8.206867 TGATAATGAGGATGAACTTCTTGGTAG 58.793 37.037 0.00 0.00 0.00 3.18
2542 2587 8.089625 TGATAATGAGGATGAACTTCTTGGTA 57.910 34.615 0.00 0.00 0.00 3.25
2543 2588 6.962182 TGATAATGAGGATGAACTTCTTGGT 58.038 36.000 0.00 0.00 0.00 3.67
2544 2589 8.461249 AATGATAATGAGGATGAACTTCTTGG 57.539 34.615 0.00 0.00 0.00 3.61
2562 2607 9.304731 GCTTGCATGTTGAGATAAAAATGATAA 57.695 29.630 1.14 0.00 0.00 1.75
2563 2608 8.689061 AGCTTGCATGTTGAGATAAAAATGATA 58.311 29.630 1.14 0.00 0.00 2.15
2564 2609 7.491372 CAGCTTGCATGTTGAGATAAAAATGAT 59.509 33.333 10.42 0.00 0.00 2.45
2565 2610 6.809689 CAGCTTGCATGTTGAGATAAAAATGA 59.190 34.615 10.42 0.00 0.00 2.57
2566 2611 6.588756 ACAGCTTGCATGTTGAGATAAAAATG 59.411 34.615 20.74 0.00 0.00 2.32
2567 2612 6.694447 ACAGCTTGCATGTTGAGATAAAAAT 58.306 32.000 20.74 0.00 0.00 1.82
2568 2613 6.088016 ACAGCTTGCATGTTGAGATAAAAA 57.912 33.333 20.74 0.00 0.00 1.94
2569 2614 5.335897 GGACAGCTTGCATGTTGAGATAAAA 60.336 40.000 20.74 0.00 0.00 1.52
2570 2615 4.156556 GGACAGCTTGCATGTTGAGATAAA 59.843 41.667 20.74 0.00 0.00 1.40
2571 2616 3.691118 GGACAGCTTGCATGTTGAGATAA 59.309 43.478 20.74 0.00 0.00 1.75
2572 2617 3.273434 GGACAGCTTGCATGTTGAGATA 58.727 45.455 20.74 0.00 0.00 1.98
2573 2618 2.089980 GGACAGCTTGCATGTTGAGAT 58.910 47.619 20.74 1.12 0.00 2.75
2574 2619 1.202794 TGGACAGCTTGCATGTTGAGA 60.203 47.619 20.74 3.76 0.00 3.27
2575 2620 1.068748 GTGGACAGCTTGCATGTTGAG 60.069 52.381 20.74 0.57 0.00 3.02
2576 2621 0.953727 GTGGACAGCTTGCATGTTGA 59.046 50.000 20.74 0.00 0.00 3.18
2577 2622 0.386352 CGTGGACAGCTTGCATGTTG 60.386 55.000 13.76 13.76 0.00 3.33
2578 2623 0.819259 ACGTGGACAGCTTGCATGTT 60.819 50.000 8.65 0.00 42.84 2.71
2579 2624 1.227943 ACGTGGACAGCTTGCATGT 60.228 52.632 8.65 8.65 40.76 3.21
2580 2625 1.229975 TGACGTGGACAGCTTGCATG 61.230 55.000 0.00 7.66 38.51 4.06
2581 2626 0.952497 CTGACGTGGACAGCTTGCAT 60.952 55.000 0.00 0.00 0.00 3.96
2582 2627 1.595109 CTGACGTGGACAGCTTGCA 60.595 57.895 0.00 0.00 0.00 4.08
2583 2628 3.248029 CTGACGTGGACAGCTTGC 58.752 61.111 0.00 0.00 0.00 4.01
2588 2633 0.603707 ATGGTTGCTGACGTGGACAG 60.604 55.000 0.00 0.00 38.27 3.51
2589 2634 0.884259 CATGGTTGCTGACGTGGACA 60.884 55.000 0.00 0.00 0.00 4.02
2590 2635 1.868997 CATGGTTGCTGACGTGGAC 59.131 57.895 0.00 0.00 0.00 4.02
2591 2636 1.965930 GCATGGTTGCTGACGTGGA 60.966 57.895 0.00 0.00 45.77 4.02
2592 2637 2.562912 GCATGGTTGCTGACGTGG 59.437 61.111 0.00 0.00 45.77 4.94
2601 2646 3.872511 TTTGCTTAGATGGCATGGTTG 57.127 42.857 3.81 0.00 39.54 3.77
2602 2647 4.284234 AGTTTTTGCTTAGATGGCATGGTT 59.716 37.500 3.81 0.00 39.54 3.67
2603 2648 3.834231 AGTTTTTGCTTAGATGGCATGGT 59.166 39.130 3.81 0.00 39.54 3.55
2604 2649 4.082081 TCAGTTTTTGCTTAGATGGCATGG 60.082 41.667 3.81 0.00 39.54 3.66
2605 2650 5.063180 TCAGTTTTTGCTTAGATGGCATG 57.937 39.130 3.81 0.00 39.54 4.06
2606 2651 5.927281 ATCAGTTTTTGCTTAGATGGCAT 57.073 34.783 0.00 0.00 39.54 4.40
2607 2652 5.336690 GGAATCAGTTTTTGCTTAGATGGCA 60.337 40.000 0.00 0.00 37.97 4.92
2608 2653 5.105063 GGAATCAGTTTTTGCTTAGATGGC 58.895 41.667 0.00 0.00 0.00 4.40
2609 2654 6.271488 TGGAATCAGTTTTTGCTTAGATGG 57.729 37.500 0.00 0.00 0.00 3.51
2610 2655 8.653338 CAAATGGAATCAGTTTTTGCTTAGATG 58.347 33.333 0.00 0.00 0.00 2.90
2611 2656 7.332678 GCAAATGGAATCAGTTTTTGCTTAGAT 59.667 33.333 10.49 0.00 45.29 1.98
2612 2657 6.646240 GCAAATGGAATCAGTTTTTGCTTAGA 59.354 34.615 10.49 0.00 45.29 2.10
2613 2658 6.824557 GCAAATGGAATCAGTTTTTGCTTAG 58.175 36.000 10.49 0.00 45.29 2.18
2614 2659 6.783892 GCAAATGGAATCAGTTTTTGCTTA 57.216 33.333 10.49 0.00 45.29 3.09
2615 2660 5.678132 GCAAATGGAATCAGTTTTTGCTT 57.322 34.783 10.49 0.00 45.29 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.