Multiple sequence alignment - TraesCS7D01G179400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G179400 chr7D 100.000 2748 0 0 1 2748 132765425 132762678 0.000000e+00 5075.0
1 TraesCS7D01G179400 chr7D 88.696 1955 132 40 657 2568 132831090 132829182 0.000000e+00 2303.0
2 TraesCS7D01G179400 chr7D 87.606 1646 122 37 721 2313 194129233 194130849 0.000000e+00 1834.0
3 TraesCS7D01G179400 chr7D 90.754 1352 79 18 976 2313 132741220 132742539 0.000000e+00 1762.0
4 TraesCS7D01G179400 chr7D 85.601 1639 118 46 722 2291 132135488 132137077 0.000000e+00 1611.0
5 TraesCS7D01G179400 chr7D 88.567 1347 87 27 747 2069 132156996 132158299 0.000000e+00 1572.0
6 TraesCS7D01G179400 chr7D 83.968 761 71 26 1948 2686 132158116 132158847 0.000000e+00 682.0
7 TraesCS7D01G179400 chr7D 86.508 252 24 5 2072 2313 132138043 132138294 4.510000e-68 268.0
8 TraesCS7D01G179400 chr7D 87.137 241 10 10 2505 2735 132138380 132138609 1.260000e-63 254.0
9 TraesCS7D01G179400 chr7D 86.147 231 16 10 2505 2735 132742625 132742839 4.580000e-58 235.0
10 TraesCS7D01G179400 chr7D 91.270 126 6 3 2437 2560 194130893 194131015 1.690000e-37 167.0
11 TraesCS7D01G179400 chr7D 90.476 126 5 5 2437 2560 132749460 132749580 2.830000e-35 159.0
12 TraesCS7D01G179400 chr7D 83.333 156 11 3 2577 2732 132204822 132204962 2.220000e-26 130.0
13 TraesCS7D01G179400 chr7D 100.000 28 0 0 2364 2391 132749406 132749433 5.000000e-03 52.8
14 TraesCS7D01G179400 chr7A 89.192 1869 118 45 887 2735 210252293 210254097 0.000000e+00 2255.0
15 TraesCS7D01G179400 chr7A 89.886 1750 99 24 1026 2748 131109279 131107581 0.000000e+00 2180.0
16 TraesCS7D01G179400 chr7A 86.529 1648 155 35 679 2280 131187744 131186118 0.000000e+00 1751.0
17 TraesCS7D01G179400 chr7A 85.617 1613 110 50 666 2212 130782220 130783776 0.000000e+00 1581.0
18 TraesCS7D01G179400 chr7A 85.617 1613 110 50 666 2212 131121715 131120159 0.000000e+00 1581.0
19 TraesCS7D01G179400 chr7A 89.005 1055 64 14 1291 2313 203697298 203698332 0.000000e+00 1258.0
20 TraesCS7D01G179400 chr7A 88.440 718 41 15 1502 2219 130893568 130894243 0.000000e+00 828.0
21 TraesCS7D01G179400 chr7A 86.055 796 61 15 730 1504 130891568 130892334 0.000000e+00 809.0
22 TraesCS7D01G179400 chr7A 86.532 594 59 18 721 1295 203694926 203695517 3.860000e-178 634.0
23 TraesCS7D01G179400 chr7A 88.085 235 13 8 2505 2735 130784130 130784353 5.840000e-67 265.0
24 TraesCS7D01G179400 chr7A 88.085 235 13 8 2508 2738 131119802 131119579 5.840000e-67 265.0
25 TraesCS7D01G179400 chr7A 88.496 113 12 1 51 163 26976117 26976228 4.770000e-28 135.0
26 TraesCS7D01G179400 chr7B 89.237 1598 104 33 721 2279 94118553 94116985 0.000000e+00 1936.0
27 TraesCS7D01G179400 chr7B 88.418 1606 117 33 743 2290 157808284 157809878 0.000000e+00 1871.0
28 TraesCS7D01G179400 chr7B 88.691 1459 93 38 677 2110 94186520 94185109 0.000000e+00 1714.0
29 TraesCS7D01G179400 chr7B 89.239 1236 92 24 666 1876 93571290 93572509 0.000000e+00 1507.0
30 TraesCS7D01G179400 chr7B 88.130 1171 68 32 730 1876 93650475 93651598 0.000000e+00 1327.0
31 TraesCS7D01G179400 chr7B 89.630 974 66 18 736 1682 94050981 94050016 0.000000e+00 1206.0
32 TraesCS7D01G179400 chr7B 82.560 625 69 22 2071 2682 93651863 93652460 5.250000e-142 514.0
33 TraesCS7D01G179400 chr7B 83.022 536 43 27 741 1249 93864467 93864981 2.510000e-120 442.0
34 TraesCS7D01G179400 chr7B 78.745 701 70 43 1951 2577 94185333 94184638 1.980000e-106 396.0
35 TraesCS7D01G179400 chr7B 85.498 331 48 0 271 601 94186876 94186546 2.030000e-91 346.0
36 TraesCS7D01G179400 chr7B 77.726 642 83 35 255 885 94143701 94143109 3.390000e-89 339.0
37 TraesCS7D01G179400 chr7B 78.287 502 49 31 1951 2394 94142561 94142062 4.510000e-68 268.0
38 TraesCS7D01G179400 chr7B 88.652 141 9 6 2422 2560 93576511 93576646 6.090000e-37 165.0
39 TraesCS7D01G179400 chr7B 91.818 110 9 0 54 163 245073354 245073463 1.320000e-33 154.0
40 TraesCS7D01G179400 chr3D 90.909 110 7 2 54 163 558783680 558783786 7.930000e-31 145.0
41 TraesCS7D01G179400 chr3B 90.000 110 11 0 54 163 735248720 735248829 2.850000e-30 143.0
42 TraesCS7D01G179400 chr3B 90.090 111 10 1 54 163 762954035 762953925 2.850000e-30 143.0
43 TraesCS7D01G179400 chr4D 86.441 118 15 1 54 170 8074746 8074629 7.990000e-26 128.0
44 TraesCS7D01G179400 chr4B 86.957 115 13 2 50 163 639250225 639250112 7.990000e-26 128.0
45 TraesCS7D01G179400 chr2A 85.833 120 17 0 51 170 522824752 522824633 7.990000e-26 128.0
46 TraesCS7D01G179400 chr1A 86.364 110 15 0 54 163 495710075 495709966 1.340000e-23 121.0
47 TraesCS7D01G179400 chr5B 97.727 44 1 0 2652 2695 631208767 631208724 2.930000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G179400 chr7D 132762678 132765425 2747 True 5075.000000 5075 100.000000 1 2748 1 chr7D.!!$R1 2747
1 TraesCS7D01G179400 chr7D 132829182 132831090 1908 True 2303.000000 2303 88.696000 657 2568 1 chr7D.!!$R2 1911
2 TraesCS7D01G179400 chr7D 132156996 132158847 1851 False 1127.000000 1572 86.267500 747 2686 2 chr7D.!!$F3 1939
3 TraesCS7D01G179400 chr7D 194129233 194131015 1782 False 1000.500000 1834 89.438000 721 2560 2 chr7D.!!$F6 1839
4 TraesCS7D01G179400 chr7D 132741220 132742839 1619 False 998.500000 1762 88.450500 976 2735 2 chr7D.!!$F4 1759
5 TraesCS7D01G179400 chr7D 132135488 132138609 3121 False 711.000000 1611 86.415333 722 2735 3 chr7D.!!$F2 2013
6 TraesCS7D01G179400 chr7A 210252293 210254097 1804 False 2255.000000 2255 89.192000 887 2735 1 chr7A.!!$F2 1848
7 TraesCS7D01G179400 chr7A 131107581 131109279 1698 True 2180.000000 2180 89.886000 1026 2748 1 chr7A.!!$R1 1722
8 TraesCS7D01G179400 chr7A 131186118 131187744 1626 True 1751.000000 1751 86.529000 679 2280 1 chr7A.!!$R2 1601
9 TraesCS7D01G179400 chr7A 203694926 203698332 3406 False 946.000000 1258 87.768500 721 2313 2 chr7A.!!$F5 1592
10 TraesCS7D01G179400 chr7A 130782220 130784353 2133 False 923.000000 1581 86.851000 666 2735 2 chr7A.!!$F3 2069
11 TraesCS7D01G179400 chr7A 131119579 131121715 2136 True 923.000000 1581 86.851000 666 2738 2 chr7A.!!$R3 2072
12 TraesCS7D01G179400 chr7A 130891568 130894243 2675 False 818.500000 828 87.247500 730 2219 2 chr7A.!!$F4 1489
13 TraesCS7D01G179400 chr7B 94116985 94118553 1568 True 1936.000000 1936 89.237000 721 2279 1 chr7B.!!$R2 1558
14 TraesCS7D01G179400 chr7B 157808284 157809878 1594 False 1871.000000 1871 88.418000 743 2290 1 chr7B.!!$F4 1547
15 TraesCS7D01G179400 chr7B 93571290 93572509 1219 False 1507.000000 1507 89.239000 666 1876 1 chr7B.!!$F1 1210
16 TraesCS7D01G179400 chr7B 94050016 94050981 965 True 1206.000000 1206 89.630000 736 1682 1 chr7B.!!$R1 946
17 TraesCS7D01G179400 chr7B 93650475 93652460 1985 False 920.500000 1327 85.345000 730 2682 2 chr7B.!!$F6 1952
18 TraesCS7D01G179400 chr7B 94184638 94186876 2238 True 818.666667 1714 84.311333 271 2577 3 chr7B.!!$R4 2306
19 TraesCS7D01G179400 chr7B 93864467 93864981 514 False 442.000000 442 83.022000 741 1249 1 chr7B.!!$F3 508
20 TraesCS7D01G179400 chr7B 94142062 94143701 1639 True 303.500000 339 78.006500 255 2394 2 chr7B.!!$R3 2139


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
249 250 0.100682 CGCCTGACATGTAGCTACGT 59.899 55.0 18.74 16.0 0.0 3.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1758 4951 0.1791 CACCTCCATGAGCACTACCG 60.179 60.0 0.0 0.0 0.0 4.02 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.706890 TGGGCCTAAAATCGACTGAAC 58.293 47.619 4.53 0.00 0.00 3.18
21 22 2.039216 TGGGCCTAAAATCGACTGAACA 59.961 45.455 4.53 0.00 0.00 3.18
22 23 3.078837 GGGCCTAAAATCGACTGAACAA 58.921 45.455 0.84 0.00 0.00 2.83
23 24 3.127030 GGGCCTAAAATCGACTGAACAAG 59.873 47.826 0.84 0.00 0.00 3.16
24 25 3.751698 GGCCTAAAATCGACTGAACAAGT 59.248 43.478 0.00 0.00 43.85 3.16
25 26 4.933400 GGCCTAAAATCGACTGAACAAGTA 59.067 41.667 0.00 0.00 40.07 2.24
26 27 5.410439 GGCCTAAAATCGACTGAACAAGTAA 59.590 40.000 0.00 0.00 40.07 2.24
27 28 6.304882 GCCTAAAATCGACTGAACAAGTAAC 58.695 40.000 0.00 0.00 40.07 2.50
28 29 6.522761 CCTAAAATCGACTGAACAAGTAACG 58.477 40.000 0.00 0.00 40.07 3.18
29 30 4.985044 AAATCGACTGAACAAGTAACGG 57.015 40.909 0.00 0.00 40.07 4.44
30 31 3.928727 ATCGACTGAACAAGTAACGGA 57.071 42.857 0.00 0.00 40.07 4.69
31 32 3.278367 TCGACTGAACAAGTAACGGAG 57.722 47.619 0.00 0.00 40.07 4.63
32 33 2.620115 TCGACTGAACAAGTAACGGAGT 59.380 45.455 0.00 0.00 41.60 3.85
33 34 2.978489 CGACTGAACAAGTAACGGAGTC 59.022 50.000 0.00 0.00 39.03 3.36
34 35 3.549423 CGACTGAACAAGTAACGGAGTCA 60.549 47.826 0.00 0.00 39.03 3.41
35 36 3.714391 ACTGAACAAGTAACGGAGTCAC 58.286 45.455 0.00 0.00 45.00 3.67
36 37 3.383825 ACTGAACAAGTAACGGAGTCACT 59.616 43.478 0.00 0.00 45.00 3.41
37 38 3.973657 TGAACAAGTAACGGAGTCACTC 58.026 45.455 0.00 0.00 45.00 3.51
38 39 2.701073 ACAAGTAACGGAGTCACTCG 57.299 50.000 0.00 0.00 45.00 4.18
39 40 2.224606 ACAAGTAACGGAGTCACTCGA 58.775 47.619 0.00 0.00 45.00 4.04
40 41 2.031333 ACAAGTAACGGAGTCACTCGAC 60.031 50.000 0.00 0.00 45.00 4.20
41 42 1.163554 AGTAACGGAGTCACTCGACC 58.836 55.000 0.00 0.00 45.00 4.79
42 43 1.163554 GTAACGGAGTCACTCGACCT 58.836 55.000 0.00 0.00 45.00 3.85
43 44 1.130186 GTAACGGAGTCACTCGACCTC 59.870 57.143 0.00 0.00 45.00 3.85
44 45 1.242665 AACGGAGTCACTCGACCTCC 61.243 60.000 0.00 0.00 45.00 4.30
45 46 1.377463 CGGAGTCACTCGACCTCCT 60.377 63.158 0.00 0.00 43.73 3.69
46 47 0.107800 CGGAGTCACTCGACCTCCTA 60.108 60.000 0.00 0.00 43.73 2.94
47 48 1.381522 GGAGTCACTCGACCTCCTAC 58.618 60.000 0.00 0.00 43.73 3.18
48 49 1.339824 GGAGTCACTCGACCTCCTACA 60.340 57.143 0.00 0.00 43.73 2.74
49 50 1.738908 GAGTCACTCGACCTCCTACAC 59.261 57.143 0.00 0.00 43.73 2.90
50 51 1.073444 AGTCACTCGACCTCCTACACA 59.927 52.381 0.00 0.00 43.73 3.72
51 52 1.199558 GTCACTCGACCTCCTACACAC 59.800 57.143 0.00 0.00 36.02 3.82
52 53 0.526662 CACTCGACCTCCTACACACC 59.473 60.000 0.00 0.00 0.00 4.16
53 54 0.404812 ACTCGACCTCCTACACACCT 59.595 55.000 0.00 0.00 0.00 4.00
54 55 1.632409 ACTCGACCTCCTACACACCTA 59.368 52.381 0.00 0.00 0.00 3.08
55 56 2.015587 CTCGACCTCCTACACACCTAC 58.984 57.143 0.00 0.00 0.00 3.18
56 57 1.632409 TCGACCTCCTACACACCTACT 59.368 52.381 0.00 0.00 0.00 2.57
57 58 2.015587 CGACCTCCTACACACCTACTC 58.984 57.143 0.00 0.00 0.00 2.59
58 59 2.355920 CGACCTCCTACACACCTACTCT 60.356 54.545 0.00 0.00 0.00 3.24
59 60 3.281158 GACCTCCTACACACCTACTCTC 58.719 54.545 0.00 0.00 0.00 3.20
60 61 2.920941 ACCTCCTACACACCTACTCTCT 59.079 50.000 0.00 0.00 0.00 3.10
61 62 4.110072 ACCTCCTACACACCTACTCTCTA 58.890 47.826 0.00 0.00 0.00 2.43
62 63 4.080413 ACCTCCTACACACCTACTCTCTAC 60.080 50.000 0.00 0.00 0.00 2.59
63 64 4.121317 CTCCTACACACCTACTCTCTACG 58.879 52.174 0.00 0.00 0.00 3.51
64 65 3.517100 TCCTACACACCTACTCTCTACGT 59.483 47.826 0.00 0.00 0.00 3.57
65 66 3.870419 CCTACACACCTACTCTCTACGTC 59.130 52.174 0.00 0.00 0.00 4.34
66 67 2.709213 ACACACCTACTCTCTACGTCC 58.291 52.381 0.00 0.00 0.00 4.79
67 68 1.664659 CACACCTACTCTCTACGTCCG 59.335 57.143 0.00 0.00 0.00 4.79
68 69 1.552337 ACACCTACTCTCTACGTCCGA 59.448 52.381 0.00 0.00 0.00 4.55
69 70 2.027745 ACACCTACTCTCTACGTCCGAA 60.028 50.000 0.00 0.00 0.00 4.30
70 71 3.005554 CACCTACTCTCTACGTCCGAAA 58.994 50.000 0.00 0.00 0.00 3.46
71 72 3.438087 CACCTACTCTCTACGTCCGAAAA 59.562 47.826 0.00 0.00 0.00 2.29
72 73 4.096081 CACCTACTCTCTACGTCCGAAAAT 59.904 45.833 0.00 0.00 0.00 1.82
73 74 5.295292 CACCTACTCTCTACGTCCGAAAATA 59.705 44.000 0.00 0.00 0.00 1.40
74 75 5.295540 ACCTACTCTCTACGTCCGAAAATAC 59.704 44.000 0.00 0.00 0.00 1.89
75 76 5.526846 CCTACTCTCTACGTCCGAAAATACT 59.473 44.000 0.00 0.00 0.00 2.12
76 77 5.893897 ACTCTCTACGTCCGAAAATACTT 57.106 39.130 0.00 0.00 0.00 2.24
77 78 6.992063 ACTCTCTACGTCCGAAAATACTTA 57.008 37.500 0.00 0.00 0.00 2.24
78 79 7.565323 ACTCTCTACGTCCGAAAATACTTAT 57.435 36.000 0.00 0.00 0.00 1.73
79 80 7.638134 ACTCTCTACGTCCGAAAATACTTATC 58.362 38.462 0.00 0.00 0.00 1.75
80 81 7.498570 ACTCTCTACGTCCGAAAATACTTATCT 59.501 37.037 0.00 0.00 0.00 1.98
81 82 8.218338 TCTCTACGTCCGAAAATACTTATCTT 57.782 34.615 0.00 0.00 0.00 2.40
82 83 9.330063 TCTCTACGTCCGAAAATACTTATCTTA 57.670 33.333 0.00 0.00 0.00 2.10
83 84 9.941664 CTCTACGTCCGAAAATACTTATCTTAA 57.058 33.333 0.00 0.00 0.00 1.85
145 146 9.226606 ACATCCGTTTTATTCATTTCTAGAACA 57.773 29.630 4.18 0.00 0.00 3.18
148 149 9.280174 TCCGTTTTATTCATTTCTAGAACAAGT 57.720 29.630 4.18 0.00 0.00 3.16
157 158 9.496873 TTCATTTCTAGAACAAGTATTTTCGGA 57.503 29.630 4.18 0.00 0.00 4.55
158 159 8.932791 TCATTTCTAGAACAAGTATTTTCGGAC 58.067 33.333 4.18 0.00 0.00 4.79
159 160 6.939551 TTCTAGAACAAGTATTTTCGGACG 57.060 37.500 0.00 0.00 0.00 4.79
160 161 5.404946 TCTAGAACAAGTATTTTCGGACGG 58.595 41.667 0.00 0.00 0.00 4.79
161 162 4.261578 AGAACAAGTATTTTCGGACGGA 57.738 40.909 0.00 0.00 0.00 4.69
162 163 4.243270 AGAACAAGTATTTTCGGACGGAG 58.757 43.478 0.00 0.00 0.00 4.63
163 164 3.947910 ACAAGTATTTTCGGACGGAGA 57.052 42.857 0.00 0.00 0.00 3.71
164 165 4.261578 ACAAGTATTTTCGGACGGAGAA 57.738 40.909 0.00 0.00 0.00 2.87
165 166 4.243270 ACAAGTATTTTCGGACGGAGAAG 58.757 43.478 0.00 0.00 0.00 2.85
166 167 3.521947 AGTATTTTCGGACGGAGAAGG 57.478 47.619 0.00 0.00 0.00 3.46
167 168 2.830321 AGTATTTTCGGACGGAGAAGGT 59.170 45.455 0.00 0.00 0.00 3.50
168 169 4.019174 AGTATTTTCGGACGGAGAAGGTA 58.981 43.478 0.00 0.00 0.00 3.08
169 170 4.648307 AGTATTTTCGGACGGAGAAGGTAT 59.352 41.667 0.00 0.00 0.00 2.73
170 171 3.515330 TTTTCGGACGGAGAAGGTATC 57.485 47.619 0.00 0.00 0.00 2.24
171 172 2.133281 TTCGGACGGAGAAGGTATCA 57.867 50.000 0.00 0.00 0.00 2.15
172 173 1.386533 TCGGACGGAGAAGGTATCAC 58.613 55.000 0.00 0.00 0.00 3.06
173 174 1.100510 CGGACGGAGAAGGTATCACA 58.899 55.000 0.00 0.00 0.00 3.58
174 175 1.681793 CGGACGGAGAAGGTATCACAT 59.318 52.381 0.00 0.00 0.00 3.21
175 176 2.882761 CGGACGGAGAAGGTATCACATA 59.117 50.000 0.00 0.00 0.00 2.29
176 177 3.317149 CGGACGGAGAAGGTATCACATAA 59.683 47.826 0.00 0.00 0.00 1.90
177 178 4.202080 CGGACGGAGAAGGTATCACATAAA 60.202 45.833 0.00 0.00 0.00 1.40
178 179 5.290386 GGACGGAGAAGGTATCACATAAAG 58.710 45.833 0.00 0.00 0.00 1.85
179 180 5.163437 GGACGGAGAAGGTATCACATAAAGT 60.163 44.000 0.00 0.00 0.00 2.66
180 181 6.040166 GGACGGAGAAGGTATCACATAAAGTA 59.960 42.308 0.00 0.00 0.00 2.24
181 182 6.803642 ACGGAGAAGGTATCACATAAAGTAC 58.196 40.000 0.00 0.00 0.00 2.73
182 183 6.183360 ACGGAGAAGGTATCACATAAAGTACC 60.183 42.308 0.00 0.00 37.45 3.34
183 184 6.040616 CGGAGAAGGTATCACATAAAGTACCT 59.959 42.308 0.00 0.00 46.65 3.08
190 191 8.768397 AGGTATCACATAAAGTACCTTGAATCA 58.232 33.333 0.00 0.00 43.22 2.57
191 192 9.391006 GGTATCACATAAAGTACCTTGAATCAA 57.609 33.333 0.00 0.00 34.98 2.57
193 194 7.359262 TCACATAAAGTACCTTGAATCAACG 57.641 36.000 0.00 0.00 0.00 4.10
194 195 6.370442 TCACATAAAGTACCTTGAATCAACGG 59.630 38.462 9.04 9.04 0.00 4.44
195 196 5.123344 ACATAAAGTACCTTGAATCAACGGC 59.877 40.000 10.11 0.00 0.00 5.68
196 197 2.851263 AGTACCTTGAATCAACGGCA 57.149 45.000 10.11 0.00 0.00 5.69
197 198 3.134574 AGTACCTTGAATCAACGGCAA 57.865 42.857 10.11 0.00 0.00 4.52
198 199 3.074412 AGTACCTTGAATCAACGGCAAG 58.926 45.455 10.11 0.00 38.90 4.01
199 200 2.270352 ACCTTGAATCAACGGCAAGA 57.730 45.000 10.11 0.00 41.03 3.02
200 201 2.582052 ACCTTGAATCAACGGCAAGAA 58.418 42.857 10.11 0.00 41.03 2.52
201 202 2.955660 ACCTTGAATCAACGGCAAGAAA 59.044 40.909 10.11 0.00 41.03 2.52
202 203 3.383185 ACCTTGAATCAACGGCAAGAAAA 59.617 39.130 10.11 0.00 41.03 2.29
203 204 4.039124 ACCTTGAATCAACGGCAAGAAAAT 59.961 37.500 10.11 0.00 41.03 1.82
204 205 4.990426 CCTTGAATCAACGGCAAGAAAATT 59.010 37.500 0.00 0.00 41.03 1.82
205 206 5.107375 CCTTGAATCAACGGCAAGAAAATTG 60.107 40.000 0.00 0.00 41.03 2.32
206 207 5.193663 TGAATCAACGGCAAGAAAATTGA 57.806 34.783 0.00 0.00 34.03 2.57
207 208 4.981674 TGAATCAACGGCAAGAAAATTGAC 59.018 37.500 0.00 0.00 32.42 3.18
208 209 3.363341 TCAACGGCAAGAAAATTGACC 57.637 42.857 0.00 0.00 0.00 4.02
209 210 2.050691 CAACGGCAAGAAAATTGACCG 58.949 47.619 16.39 16.39 41.42 4.79
210 211 1.600023 ACGGCAAGAAAATTGACCGA 58.400 45.000 21.53 0.00 39.59 4.69
211 212 2.159382 ACGGCAAGAAAATTGACCGAT 58.841 42.857 21.53 9.67 39.59 4.18
212 213 2.161609 ACGGCAAGAAAATTGACCGATC 59.838 45.455 21.53 0.00 39.59 3.69
213 214 2.785679 GGCAAGAAAATTGACCGATCG 58.214 47.619 8.51 8.51 0.00 3.69
214 215 2.418628 GGCAAGAAAATTGACCGATCGA 59.581 45.455 18.66 0.00 0.00 3.59
215 216 3.119990 GGCAAGAAAATTGACCGATCGAA 60.120 43.478 18.66 3.01 0.00 3.71
216 217 4.438744 GGCAAGAAAATTGACCGATCGAAT 60.439 41.667 18.66 5.63 0.00 3.34
217 218 5.220777 GGCAAGAAAATTGACCGATCGAATA 60.221 40.000 18.66 0.00 0.00 1.75
218 219 6.430451 GCAAGAAAATTGACCGATCGAATAT 58.570 36.000 18.66 1.38 0.00 1.28
219 220 6.358030 GCAAGAAAATTGACCGATCGAATATG 59.642 38.462 18.66 1.10 0.00 1.78
220 221 7.630026 CAAGAAAATTGACCGATCGAATATGA 58.370 34.615 18.66 0.00 0.00 2.15
221 222 7.786178 AGAAAATTGACCGATCGAATATGAA 57.214 32.000 18.66 0.00 0.00 2.57
222 223 8.208718 AGAAAATTGACCGATCGAATATGAAA 57.791 30.769 18.66 1.42 0.00 2.69
223 224 8.673711 AGAAAATTGACCGATCGAATATGAAAA 58.326 29.630 18.66 0.00 0.00 2.29
224 225 9.450807 GAAAATTGACCGATCGAATATGAAAAT 57.549 29.630 18.66 2.22 0.00 1.82
225 226 9.450807 AAAATTGACCGATCGAATATGAAAATC 57.549 29.630 18.66 0.00 0.00 2.17
226 227 6.539649 TTGACCGATCGAATATGAAAATCC 57.460 37.500 18.66 0.00 0.00 3.01
227 228 5.606505 TGACCGATCGAATATGAAAATCCA 58.393 37.500 18.66 0.00 0.00 3.41
228 229 5.696270 TGACCGATCGAATATGAAAATCCAG 59.304 40.000 18.66 0.00 0.00 3.86
229 230 5.611374 ACCGATCGAATATGAAAATCCAGT 58.389 37.500 18.66 0.00 0.00 4.00
230 231 5.696724 ACCGATCGAATATGAAAATCCAGTC 59.303 40.000 18.66 0.00 0.00 3.51
231 232 5.164051 CCGATCGAATATGAAAATCCAGTCG 60.164 44.000 18.66 0.00 0.00 4.18
232 233 5.597813 ATCGAATATGAAAATCCAGTCGC 57.402 39.130 0.00 0.00 0.00 5.19
233 234 3.807622 TCGAATATGAAAATCCAGTCGCC 59.192 43.478 0.00 0.00 0.00 5.54
234 235 3.809832 CGAATATGAAAATCCAGTCGCCT 59.190 43.478 0.00 0.00 0.00 5.52
235 236 4.319046 CGAATATGAAAATCCAGTCGCCTG 60.319 45.833 0.00 0.00 38.50 4.85
236 237 2.787473 ATGAAAATCCAGTCGCCTGA 57.213 45.000 0.00 0.00 41.50 3.86
237 238 1.808411 TGAAAATCCAGTCGCCTGAC 58.192 50.000 0.00 0.00 45.86 3.51
247 248 1.841450 GTCGCCTGACATGTAGCTAC 58.159 55.000 17.30 17.30 44.82 3.58
248 249 0.380733 TCGCCTGACATGTAGCTACG 59.619 55.000 18.74 8.21 0.00 3.51
249 250 0.100682 CGCCTGACATGTAGCTACGT 59.899 55.000 18.74 16.00 0.00 3.57
250 251 1.560923 GCCTGACATGTAGCTACGTG 58.439 55.000 34.37 34.37 46.08 4.49
251 252 1.560923 CCTGACATGTAGCTACGTGC 58.439 55.000 35.42 28.52 44.88 5.34
252 253 1.135112 CCTGACATGTAGCTACGTGCA 60.135 52.381 35.42 30.60 44.88 4.57
253 254 1.920574 CTGACATGTAGCTACGTGCAC 59.079 52.381 35.42 29.40 44.88 4.57
263 264 6.996106 TGTAGCTACGTGCACATTAAATAAC 58.004 36.000 18.64 5.55 45.94 1.89
290 291 5.300792 CCCATTAAATAAGGCCGTGTATGTT 59.699 40.000 0.00 0.00 0.00 2.71
300 301 2.158841 GCCGTGTATGTTTTGACGTCAT 59.841 45.455 20.80 6.45 0.00 3.06
303 304 4.860352 CCGTGTATGTTTTGACGTCATAGA 59.140 41.667 20.80 9.70 0.00 1.98
315 316 5.060506 TGACGTCATAGAATGTTTGGTTGT 58.939 37.500 15.76 0.00 0.00 3.32
319 320 6.183360 ACGTCATAGAATGTTTGGTTGTTTGT 60.183 34.615 0.00 0.00 0.00 2.83
320 321 6.695278 CGTCATAGAATGTTTGGTTGTTTGTT 59.305 34.615 0.00 0.00 0.00 2.83
323 324 7.493971 TCATAGAATGTTTGGTTGTTTGTTTGG 59.506 33.333 0.00 0.00 0.00 3.28
380 381 8.246871 TCATTCGCAAAATAATGGTGTTGATTA 58.753 29.630 0.00 0.00 34.52 1.75
399 400 9.141400 GTTGATTAAGAATTCTTCTAGTCACGT 57.859 33.333 23.70 0.00 39.61 4.49
403 404 6.771188 AAGAATTCTTCTAGTCACGTGTTG 57.229 37.500 15.11 4.62 39.61 3.33
413 414 3.443976 AGTCACGTGTTGGCAAATTTTC 58.556 40.909 16.51 0.00 29.07 2.29
421 422 4.929211 GTGTTGGCAAATTTTCATAGGTCC 59.071 41.667 0.00 0.00 0.00 4.46
422 423 4.020662 TGTTGGCAAATTTTCATAGGTCCC 60.021 41.667 0.00 0.00 0.00 4.46
423 424 4.059773 TGGCAAATTTTCATAGGTCCCT 57.940 40.909 0.00 0.00 0.00 4.20
432 433 0.680061 CATAGGTCCCTAGGCCGAAC 59.320 60.000 2.05 0.00 31.45 3.95
445 446 3.706140 CGAACTGCGGTATGGCTC 58.294 61.111 0.00 0.00 36.03 4.70
458 459 0.465097 ATGGCTCGGATTTGGCTCAG 60.465 55.000 0.00 0.00 0.00 3.35
460 461 0.179034 GGCTCGGATTTGGCTCAGAT 60.179 55.000 0.00 0.00 0.00 2.90
464 465 2.806818 CTCGGATTTGGCTCAGATGATG 59.193 50.000 0.00 0.00 0.00 3.07
479 480 6.169800 TCAGATGATGTTTTGGACGTTATCA 58.830 36.000 0.00 0.00 40.76 2.15
493 494 5.292589 GGACGTTATCAACCGTGATTGTAAT 59.707 40.000 0.00 0.00 42.03 1.89
495 496 5.870433 ACGTTATCAACCGTGATTGTAATCA 59.130 36.000 3.28 3.28 42.03 2.57
545 547 6.001460 TCGAAGAAGAAAATGGTGTATGGTT 58.999 36.000 0.00 0.00 0.00 3.67
549 551 6.758254 AGAAGAAAATGGTGTATGGTTTTGG 58.242 36.000 0.00 0.00 0.00 3.28
563 565 3.118261 TGGTTTTGGTTGCTTTATTGCCA 60.118 39.130 0.00 0.00 0.00 4.92
593 595 4.645535 AGCACACTAGAGAAAGCAAATCA 58.354 39.130 0.00 0.00 0.00 2.57
601 603 9.107177 CACTAGAGAAAGCAAATCACTCATAAT 57.893 33.333 0.00 0.00 0.00 1.28
602 604 9.107177 ACTAGAGAAAGCAAATCACTCATAATG 57.893 33.333 0.00 0.00 0.00 1.90
604 606 6.888632 AGAGAAAGCAAATCACTCATAATGGT 59.111 34.615 0.00 0.00 0.00 3.55
608 610 7.886629 AAGCAAATCACTCATAATGGTGTAT 57.113 32.000 0.00 0.00 35.26 2.29
609 611 7.268199 AGCAAATCACTCATAATGGTGTATG 57.732 36.000 0.00 0.00 35.26 2.39
610 612 6.263842 AGCAAATCACTCATAATGGTGTATGG 59.736 38.462 0.00 0.00 35.26 2.74
621 630 2.710377 TGGTGTATGGTGCAGATGAAC 58.290 47.619 0.00 0.00 0.00 3.18
629 638 3.831715 GGTGCAGATGAACCAAGTAAC 57.168 47.619 5.01 0.00 43.57 2.50
630 639 3.146066 GGTGCAGATGAACCAAGTAACA 58.854 45.455 5.01 0.00 43.57 2.41
631 640 3.568007 GGTGCAGATGAACCAAGTAACAA 59.432 43.478 5.01 0.00 43.57 2.83
632 641 4.537015 GTGCAGATGAACCAAGTAACAAC 58.463 43.478 0.00 0.00 0.00 3.32
633 642 3.568007 TGCAGATGAACCAAGTAACAACC 59.432 43.478 0.00 0.00 0.00 3.77
634 643 3.821033 GCAGATGAACCAAGTAACAACCT 59.179 43.478 0.00 0.00 0.00 3.50
635 644 4.278419 GCAGATGAACCAAGTAACAACCTT 59.722 41.667 0.00 0.00 0.00 3.50
636 645 5.562890 GCAGATGAACCAAGTAACAACCTTC 60.563 44.000 0.00 0.00 0.00 3.46
637 646 5.530915 CAGATGAACCAAGTAACAACCTTCA 59.469 40.000 0.00 0.00 0.00 3.02
638 647 5.765182 AGATGAACCAAGTAACAACCTTCAG 59.235 40.000 0.00 0.00 0.00 3.02
639 648 3.630312 TGAACCAAGTAACAACCTTCAGC 59.370 43.478 0.00 0.00 0.00 4.26
640 649 3.577805 ACCAAGTAACAACCTTCAGCT 57.422 42.857 0.00 0.00 0.00 4.24
641 650 3.898482 ACCAAGTAACAACCTTCAGCTT 58.102 40.909 0.00 0.00 0.00 3.74
642 651 4.278310 ACCAAGTAACAACCTTCAGCTTT 58.722 39.130 0.00 0.00 0.00 3.51
643 652 5.442391 ACCAAGTAACAACCTTCAGCTTTA 58.558 37.500 0.00 0.00 0.00 1.85
644 653 5.531287 ACCAAGTAACAACCTTCAGCTTTAG 59.469 40.000 0.00 0.00 0.00 1.85
645 654 5.763204 CCAAGTAACAACCTTCAGCTTTAGA 59.237 40.000 0.00 0.00 0.00 2.10
646 655 6.262273 CCAAGTAACAACCTTCAGCTTTAGAA 59.738 38.462 0.00 0.00 0.00 2.10
647 656 7.201785 CCAAGTAACAACCTTCAGCTTTAGAAA 60.202 37.037 0.00 0.00 0.00 2.52
648 657 7.497925 AGTAACAACCTTCAGCTTTAGAAAG 57.502 36.000 0.00 0.00 39.03 2.62
667 676 3.266510 AGCAAATCACTCATAAGCCGA 57.733 42.857 0.00 0.00 0.00 5.54
673 682 2.086094 TCACTCATAAGCCGACGTACA 58.914 47.619 0.00 0.00 0.00 2.90
674 683 2.686405 TCACTCATAAGCCGACGTACAT 59.314 45.455 0.00 0.00 0.00 2.29
679 688 3.129813 TCATAAGCCGACGTACATCAACT 59.870 43.478 0.00 0.00 0.00 3.16
717 733 5.221185 GCACCACAGCAGATCAATGATTATT 60.221 40.000 0.00 0.00 0.00 1.40
728 744 8.562052 CAGATCAATGATTATTTTCATCCACGA 58.438 33.333 0.00 0.00 35.29 4.35
733 752 2.341846 TATTTTCATCCACGAGCCCC 57.658 50.000 0.00 0.00 0.00 5.80
759 780 1.812235 ACATCAAGCAGCACGAATCA 58.188 45.000 0.00 0.00 0.00 2.57
773 794 2.930040 ACGAATCATAAAGCTGTGGTCG 59.070 45.455 13.91 13.91 32.12 4.79
775 796 1.290203 ATCATAAAGCTGTGGTCGCG 58.710 50.000 0.00 0.00 0.00 5.87
786 807 1.516386 TGGTCGCGCGATCTTTCTC 60.516 57.895 39.11 23.15 0.00 2.87
815 836 1.066587 GAGCCCAACCGATCTCTCG 59.933 63.158 0.00 0.00 44.62 4.04
902 939 1.002134 CACTCCATTTCGCACCCCT 60.002 57.895 0.00 0.00 0.00 4.79
941 981 5.771666 AGAATCCAAAATCACAGCAGAAGAA 59.228 36.000 0.00 0.00 0.00 2.52
983 1073 6.127619 GGAAAGAAGAGAGAGAAAGAGGAGAG 60.128 46.154 0.00 0.00 0.00 3.20
984 1074 5.779241 AGAAGAGAGAGAAAGAGGAGAGA 57.221 43.478 0.00 0.00 0.00 3.10
985 1075 5.749462 AGAAGAGAGAGAAAGAGGAGAGAG 58.251 45.833 0.00 0.00 0.00 3.20
986 1076 5.488919 AGAAGAGAGAGAAAGAGGAGAGAGA 59.511 44.000 0.00 0.00 0.00 3.10
987 1077 5.365021 AGAGAGAGAAAGAGGAGAGAGAG 57.635 47.826 0.00 0.00 0.00 3.20
988 1078 5.032846 AGAGAGAGAAAGAGGAGAGAGAGA 58.967 45.833 0.00 0.00 0.00 3.10
996 1090 5.983333 AAGAGGAGAGAGAGAAGAGAGAT 57.017 43.478 0.00 0.00 0.00 2.75
1050 1156 4.785453 CCGGCCAGCCTCCTCAAC 62.785 72.222 2.24 0.00 0.00 3.18
1120 1226 4.668118 ACCACCGCCCGTACAACG 62.668 66.667 0.00 0.00 42.11 4.10
1127 1239 2.744709 CCCGTACAACGCCAAGGG 60.745 66.667 0.00 0.00 40.91 3.95
1507 4678 2.679716 GGGCTGACCAAGGAGCAT 59.320 61.111 0.00 0.00 39.85 3.79
1650 4827 1.269166 GACGCGTACAAGATGGACAG 58.731 55.000 13.97 0.00 27.91 3.51
1755 4946 2.040813 TCAAGGTCGAGTAGGTAGTGGT 59.959 50.000 0.00 0.00 0.00 4.16
1758 4951 1.946081 GGTCGAGTAGGTAGTGGTAGC 59.054 57.143 0.00 0.00 0.00 3.58
1831 5034 3.011566 TGTGGTCATGTTTGGTGTCTT 57.988 42.857 0.00 0.00 0.00 3.01
1900 5120 1.134220 GTCTGGTGGTGAAGTTGGTCA 60.134 52.381 0.00 0.00 0.00 4.02
1901 5121 1.774254 TCTGGTGGTGAAGTTGGTCAT 59.226 47.619 0.00 0.00 0.00 3.06
1932 5160 3.855689 AATTTCCTCAAGTTCGGCATG 57.144 42.857 0.00 0.00 0.00 4.06
1933 5161 0.881118 TTTCCTCAAGTTCGGCATGC 59.119 50.000 9.90 9.90 0.00 4.06
1963 5191 2.503356 TGCTTTGGTGGTGAAATTGGTT 59.497 40.909 0.00 0.00 0.00 3.67
1990 5218 6.489700 TGCAATTCTGTTGATTTCCTCAAGTA 59.510 34.615 0.00 0.00 44.44 2.24
2112 5451 6.912591 GTCATGAACTTTGTTGATTTTCTCGT 59.087 34.615 0.00 0.00 0.00 4.18
2142 5481 5.412594 GCCTGATGAACTACTTTGATTGTCA 59.587 40.000 0.00 0.00 0.00 3.58
2181 5688 5.661056 TTCTCGTCCTTGATCTGTATTGT 57.339 39.130 0.00 0.00 0.00 2.71
2254 5783 0.250727 CATGGAGTTGGTGAACGGGT 60.251 55.000 0.00 0.00 37.15 5.28
2262 5791 3.134442 AGTTGGTGAACGGGTAGTTACAA 59.866 43.478 0.00 0.00 44.35 2.41
2350 7140 3.340814 TTTGCTTGTCTGATCTCCTCC 57.659 47.619 0.00 0.00 0.00 4.30
2351 7141 0.820226 TGCTTGTCTGATCTCCTCCG 59.180 55.000 0.00 0.00 0.00 4.63
2401 7191 9.724839 TTAACTTCTTGTAACAACTGTAATTGC 57.275 29.630 0.00 0.00 32.47 3.56
2428 7218 6.053005 CAGTTTGTAGTTGTAGGGTTCTTGA 58.947 40.000 0.00 0.00 0.00 3.02
2591 7406 9.965902 ATCAACTATACTTTGATGGAGAAGTTT 57.034 29.630 4.64 0.00 41.24 2.66
2666 7493 3.300009 CTTGCTGGTGAAAATTCGTCAC 58.700 45.455 11.90 11.90 43.87 3.67
2695 7522 7.931275 ACTTTGTTGATTTCCTCTAGTTTGAC 58.069 34.615 0.00 0.00 0.00 3.18
2696 7523 7.775561 ACTTTGTTGATTTCCTCTAGTTTGACT 59.224 33.333 0.00 0.00 0.00 3.41
2697 7524 7.496529 TTGTTGATTTCCTCTAGTTTGACTG 57.503 36.000 0.00 0.00 0.00 3.51
2698 7525 6.591935 TGTTGATTTCCTCTAGTTTGACTGT 58.408 36.000 0.00 0.00 0.00 3.55
2699 7526 7.054124 TGTTGATTTCCTCTAGTTTGACTGTT 58.946 34.615 0.00 0.00 0.00 3.16
2700 7527 7.556275 TGTTGATTTCCTCTAGTTTGACTGTTT 59.444 33.333 0.00 0.00 0.00 2.83
2701 7528 7.496529 TGATTTCCTCTAGTTTGACTGTTTG 57.503 36.000 0.00 0.00 0.00 2.93
2702 7529 7.279615 TGATTTCCTCTAGTTTGACTGTTTGA 58.720 34.615 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.039216 TGTTCAGTCGATTTTAGGCCCA 59.961 45.455 0.00 0.00 0.00 5.36
2 3 3.751698 ACTTGTTCAGTCGATTTTAGGCC 59.248 43.478 0.00 0.00 0.00 5.19
4 5 6.400727 CCGTTACTTGTTCAGTCGATTTTAGG 60.401 42.308 0.00 0.00 36.88 2.69
5 6 6.364165 TCCGTTACTTGTTCAGTCGATTTTAG 59.636 38.462 0.00 0.00 36.88 1.85
6 7 6.215121 TCCGTTACTTGTTCAGTCGATTTTA 58.785 36.000 0.00 0.00 36.88 1.52
7 8 5.051816 TCCGTTACTTGTTCAGTCGATTTT 58.948 37.500 0.00 0.00 36.88 1.82
9 10 4.235360 CTCCGTTACTTGTTCAGTCGATT 58.765 43.478 0.00 0.00 36.88 3.34
11 12 2.620115 ACTCCGTTACTTGTTCAGTCGA 59.380 45.455 0.00 0.00 36.88 4.20
12 13 2.978489 GACTCCGTTACTTGTTCAGTCG 59.022 50.000 0.00 0.00 36.88 4.18
13 14 3.734735 GTGACTCCGTTACTTGTTCAGTC 59.265 47.826 0.00 0.00 36.88 3.51
14 15 3.383825 AGTGACTCCGTTACTTGTTCAGT 59.616 43.478 0.00 0.00 39.87 3.41
15 16 3.978687 AGTGACTCCGTTACTTGTTCAG 58.021 45.455 0.00 0.00 27.82 3.02
16 17 3.549423 CGAGTGACTCCGTTACTTGTTCA 60.549 47.826 7.07 0.00 32.59 3.18
17 18 2.978489 CGAGTGACTCCGTTACTTGTTC 59.022 50.000 7.07 0.00 32.59 3.18
18 19 2.620115 TCGAGTGACTCCGTTACTTGTT 59.380 45.455 7.07 0.00 35.75 2.83
19 20 2.031333 GTCGAGTGACTCCGTTACTTGT 60.031 50.000 7.07 0.00 42.08 3.16
20 21 2.582687 GTCGAGTGACTCCGTTACTTG 58.417 52.381 7.07 1.01 42.08 3.16
21 22 1.538950 GGTCGAGTGACTCCGTTACTT 59.461 52.381 7.07 0.00 44.83 2.24
22 23 1.163554 GGTCGAGTGACTCCGTTACT 58.836 55.000 7.07 0.00 44.83 2.24
23 24 1.130186 GAGGTCGAGTGACTCCGTTAC 59.870 57.143 7.07 0.65 44.83 2.50
24 25 1.446907 GAGGTCGAGTGACTCCGTTA 58.553 55.000 7.07 0.00 44.83 3.18
25 26 1.242665 GGAGGTCGAGTGACTCCGTT 61.243 60.000 7.07 0.00 44.83 4.44
26 27 1.674980 GGAGGTCGAGTGACTCCGT 60.675 63.158 7.07 0.00 44.83 4.69
27 28 0.107800 TAGGAGGTCGAGTGACTCCG 60.108 60.000 7.07 2.65 44.83 4.63
28 29 1.339824 TGTAGGAGGTCGAGTGACTCC 60.340 57.143 7.07 14.35 44.83 3.85
29 30 1.738908 GTGTAGGAGGTCGAGTGACTC 59.261 57.143 1.65 1.65 44.83 3.36
30 31 1.073444 TGTGTAGGAGGTCGAGTGACT 59.927 52.381 0.00 0.00 44.83 3.41
31 32 1.199558 GTGTGTAGGAGGTCGAGTGAC 59.800 57.143 0.00 0.00 44.72 3.67
32 33 1.531423 GTGTGTAGGAGGTCGAGTGA 58.469 55.000 0.00 0.00 0.00 3.41
33 34 0.526662 GGTGTGTAGGAGGTCGAGTG 59.473 60.000 0.00 0.00 0.00 3.51
34 35 0.404812 AGGTGTGTAGGAGGTCGAGT 59.595 55.000 0.00 0.00 0.00 4.18
35 36 2.015587 GTAGGTGTGTAGGAGGTCGAG 58.984 57.143 0.00 0.00 0.00 4.04
36 37 1.632409 AGTAGGTGTGTAGGAGGTCGA 59.368 52.381 0.00 0.00 0.00 4.20
37 38 2.015587 GAGTAGGTGTGTAGGAGGTCG 58.984 57.143 0.00 0.00 0.00 4.79
38 39 3.054213 AGAGAGTAGGTGTGTAGGAGGTC 60.054 52.174 0.00 0.00 0.00 3.85
39 40 2.920941 AGAGAGTAGGTGTGTAGGAGGT 59.079 50.000 0.00 0.00 0.00 3.85
40 41 3.655615 AGAGAGTAGGTGTGTAGGAGG 57.344 52.381 0.00 0.00 0.00 4.30
41 42 4.121317 CGTAGAGAGTAGGTGTGTAGGAG 58.879 52.174 0.00 0.00 0.00 3.69
42 43 3.517100 ACGTAGAGAGTAGGTGTGTAGGA 59.483 47.826 0.00 0.00 0.00 2.94
43 44 3.870419 GACGTAGAGAGTAGGTGTGTAGG 59.130 52.174 0.00 0.00 0.00 3.18
44 45 3.870419 GGACGTAGAGAGTAGGTGTGTAG 59.130 52.174 0.00 0.00 0.00 2.74
45 46 3.677148 CGGACGTAGAGAGTAGGTGTGTA 60.677 52.174 0.00 0.00 0.00 2.90
46 47 2.709213 GGACGTAGAGAGTAGGTGTGT 58.291 52.381 0.00 0.00 0.00 3.72
47 48 1.664659 CGGACGTAGAGAGTAGGTGTG 59.335 57.143 0.00 0.00 0.00 3.82
48 49 1.552337 TCGGACGTAGAGAGTAGGTGT 59.448 52.381 0.00 0.00 0.00 4.16
49 50 2.306341 TCGGACGTAGAGAGTAGGTG 57.694 55.000 0.00 0.00 0.00 4.00
50 51 3.340814 TTTCGGACGTAGAGAGTAGGT 57.659 47.619 0.00 0.00 0.00 3.08
51 52 4.897025 ATTTTCGGACGTAGAGAGTAGG 57.103 45.455 0.00 0.00 0.00 3.18
52 53 6.601741 AGTATTTTCGGACGTAGAGAGTAG 57.398 41.667 0.00 0.00 0.00 2.57
53 54 6.992063 AAGTATTTTCGGACGTAGAGAGTA 57.008 37.500 0.00 0.00 0.00 2.59
54 55 5.893897 AAGTATTTTCGGACGTAGAGAGT 57.106 39.130 0.00 0.00 0.00 3.24
55 56 7.863666 AGATAAGTATTTTCGGACGTAGAGAG 58.136 38.462 0.00 0.00 31.01 3.20
56 57 7.798596 AGATAAGTATTTTCGGACGTAGAGA 57.201 36.000 0.00 0.00 31.01 3.10
57 58 9.941664 TTAAGATAAGTATTTTCGGACGTAGAG 57.058 33.333 0.00 0.00 31.01 2.43
119 120 9.226606 TGTTCTAGAAATGAATAAAACGGATGT 57.773 29.630 6.78 0.00 0.00 3.06
122 123 9.280174 ACTTGTTCTAGAAATGAATAAAACGGA 57.720 29.630 6.78 0.00 0.00 4.69
131 132 9.496873 TCCGAAAATACTTGTTCTAGAAATGAA 57.503 29.630 6.78 0.00 0.00 2.57
132 133 8.932791 GTCCGAAAATACTTGTTCTAGAAATGA 58.067 33.333 6.78 0.00 0.00 2.57
133 134 7.898309 CGTCCGAAAATACTTGTTCTAGAAATG 59.102 37.037 6.78 3.11 0.00 2.32
134 135 7.064253 CCGTCCGAAAATACTTGTTCTAGAAAT 59.936 37.037 6.78 0.00 0.00 2.17
135 136 6.366877 CCGTCCGAAAATACTTGTTCTAGAAA 59.633 38.462 6.78 0.00 0.00 2.52
136 137 5.865552 CCGTCCGAAAATACTTGTTCTAGAA 59.134 40.000 0.00 0.00 0.00 2.10
137 138 5.183713 TCCGTCCGAAAATACTTGTTCTAGA 59.816 40.000 0.00 0.00 0.00 2.43
138 139 5.404946 TCCGTCCGAAAATACTTGTTCTAG 58.595 41.667 0.00 0.00 0.00 2.43
139 140 5.183713 TCTCCGTCCGAAAATACTTGTTCTA 59.816 40.000 0.00 0.00 0.00 2.10
140 141 4.021719 TCTCCGTCCGAAAATACTTGTTCT 60.022 41.667 0.00 0.00 0.00 3.01
141 142 4.240096 TCTCCGTCCGAAAATACTTGTTC 58.760 43.478 0.00 0.00 0.00 3.18
142 143 4.261578 TCTCCGTCCGAAAATACTTGTT 57.738 40.909 0.00 0.00 0.00 2.83
143 144 3.947910 TCTCCGTCCGAAAATACTTGT 57.052 42.857 0.00 0.00 0.00 3.16
144 145 3.617263 CCTTCTCCGTCCGAAAATACTTG 59.383 47.826 0.00 0.00 0.00 3.16
145 146 3.260128 ACCTTCTCCGTCCGAAAATACTT 59.740 43.478 0.00 0.00 0.00 2.24
146 147 2.830321 ACCTTCTCCGTCCGAAAATACT 59.170 45.455 0.00 0.00 0.00 2.12
147 148 3.242549 ACCTTCTCCGTCCGAAAATAC 57.757 47.619 0.00 0.00 0.00 1.89
148 149 4.646040 TGATACCTTCTCCGTCCGAAAATA 59.354 41.667 0.00 0.00 0.00 1.40
149 150 3.449737 TGATACCTTCTCCGTCCGAAAAT 59.550 43.478 0.00 0.00 0.00 1.82
150 151 2.827322 TGATACCTTCTCCGTCCGAAAA 59.173 45.455 0.00 0.00 0.00 2.29
151 152 2.165030 GTGATACCTTCTCCGTCCGAAA 59.835 50.000 0.00 0.00 0.00 3.46
152 153 1.747355 GTGATACCTTCTCCGTCCGAA 59.253 52.381 0.00 0.00 0.00 4.30
153 154 1.340308 TGTGATACCTTCTCCGTCCGA 60.340 52.381 0.00 0.00 0.00 4.55
154 155 1.100510 TGTGATACCTTCTCCGTCCG 58.899 55.000 0.00 0.00 0.00 4.79
155 156 4.931661 TTATGTGATACCTTCTCCGTCC 57.068 45.455 0.00 0.00 0.00 4.79
156 157 5.903810 ACTTTATGTGATACCTTCTCCGTC 58.096 41.667 0.00 0.00 0.00 4.79
157 158 5.934402 ACTTTATGTGATACCTTCTCCGT 57.066 39.130 0.00 0.00 0.00 4.69
158 159 6.040616 AGGTACTTTATGTGATACCTTCTCCG 59.959 42.308 0.00 0.00 44.03 4.63
159 160 7.362802 AGGTACTTTATGTGATACCTTCTCC 57.637 40.000 0.00 0.00 44.03 3.71
178 179 3.071479 TCTTGCCGTTGATTCAAGGTAC 58.929 45.455 15.70 9.39 38.13 3.34
179 180 3.410631 TCTTGCCGTTGATTCAAGGTA 57.589 42.857 15.70 9.11 38.13 3.08
180 181 2.270352 TCTTGCCGTTGATTCAAGGT 57.730 45.000 15.70 0.00 38.13 3.50
181 182 3.641437 TTTCTTGCCGTTGATTCAAGG 57.359 42.857 11.28 11.28 38.13 3.61
182 183 5.691305 TCAATTTTCTTGCCGTTGATTCAAG 59.309 36.000 0.00 0.00 38.73 3.02
183 184 5.461737 GTCAATTTTCTTGCCGTTGATTCAA 59.538 36.000 0.00 0.00 32.19 2.69
184 185 4.981674 GTCAATTTTCTTGCCGTTGATTCA 59.018 37.500 0.00 0.00 32.19 2.57
185 186 4.385748 GGTCAATTTTCTTGCCGTTGATTC 59.614 41.667 0.00 0.00 32.19 2.52
186 187 4.306600 GGTCAATTTTCTTGCCGTTGATT 58.693 39.130 0.00 0.00 32.19 2.57
187 188 3.611530 CGGTCAATTTTCTTGCCGTTGAT 60.612 43.478 10.55 0.00 35.74 2.57
188 189 2.287308 CGGTCAATTTTCTTGCCGTTGA 60.287 45.455 10.55 0.00 35.74 3.18
189 190 2.050691 CGGTCAATTTTCTTGCCGTTG 58.949 47.619 10.55 0.00 35.74 4.10
190 191 1.950909 TCGGTCAATTTTCTTGCCGTT 59.049 42.857 15.28 0.00 38.89 4.44
191 192 1.600023 TCGGTCAATTTTCTTGCCGT 58.400 45.000 15.28 0.00 38.89 5.68
192 193 2.785679 GATCGGTCAATTTTCTTGCCG 58.214 47.619 11.80 11.80 39.04 5.69
193 194 2.418628 TCGATCGGTCAATTTTCTTGCC 59.581 45.455 16.41 0.00 0.00 4.52
194 195 3.740044 TCGATCGGTCAATTTTCTTGC 57.260 42.857 16.41 0.00 0.00 4.01
195 196 7.630026 TCATATTCGATCGGTCAATTTTCTTG 58.370 34.615 16.41 2.83 0.00 3.02
196 197 7.786178 TCATATTCGATCGGTCAATTTTCTT 57.214 32.000 16.41 0.00 0.00 2.52
197 198 7.786178 TTCATATTCGATCGGTCAATTTTCT 57.214 32.000 16.41 0.00 0.00 2.52
198 199 8.835467 TTTTCATATTCGATCGGTCAATTTTC 57.165 30.769 16.41 0.00 0.00 2.29
199 200 9.450807 GATTTTCATATTCGATCGGTCAATTTT 57.549 29.630 16.41 0.00 0.00 1.82
200 201 8.076178 GGATTTTCATATTCGATCGGTCAATTT 58.924 33.333 16.41 0.32 0.00 1.82
201 202 7.228507 TGGATTTTCATATTCGATCGGTCAATT 59.771 33.333 16.41 0.00 0.00 2.32
202 203 6.710295 TGGATTTTCATATTCGATCGGTCAAT 59.290 34.615 16.41 10.34 0.00 2.57
203 204 6.052360 TGGATTTTCATATTCGATCGGTCAA 58.948 36.000 16.41 2.33 0.00 3.18
204 205 5.606505 TGGATTTTCATATTCGATCGGTCA 58.393 37.500 16.41 0.00 0.00 4.02
205 206 5.696724 ACTGGATTTTCATATTCGATCGGTC 59.303 40.000 16.41 0.00 0.00 4.79
206 207 5.611374 ACTGGATTTTCATATTCGATCGGT 58.389 37.500 16.41 7.22 0.00 4.69
207 208 5.164051 CGACTGGATTTTCATATTCGATCGG 60.164 44.000 16.41 0.00 0.00 4.18
208 209 5.666427 GCGACTGGATTTTCATATTCGATCG 60.666 44.000 9.36 9.36 0.00 3.69
209 210 5.389935 GGCGACTGGATTTTCATATTCGATC 60.390 44.000 0.00 0.00 0.00 3.69
210 211 4.452455 GGCGACTGGATTTTCATATTCGAT 59.548 41.667 0.00 0.00 0.00 3.59
211 212 3.807622 GGCGACTGGATTTTCATATTCGA 59.192 43.478 0.00 0.00 0.00 3.71
212 213 3.809832 AGGCGACTGGATTTTCATATTCG 59.190 43.478 0.00 0.00 41.13 3.34
227 228 1.405821 GTAGCTACATGTCAGGCGACT 59.594 52.381 19.15 0.00 43.06 4.18
228 229 1.841450 GTAGCTACATGTCAGGCGAC 58.159 55.000 19.15 8.59 42.93 5.19
229 230 0.380733 CGTAGCTACATGTCAGGCGA 59.619 55.000 23.21 0.00 0.00 5.54
230 231 0.100682 ACGTAGCTACATGTCAGGCG 59.899 55.000 23.21 8.69 0.00 5.52
231 232 1.560923 CACGTAGCTACATGTCAGGC 58.439 55.000 23.21 5.92 0.00 4.85
232 233 1.135112 TGCACGTAGCTACATGTCAGG 60.135 52.381 23.21 7.80 45.94 3.86
233 234 1.920574 GTGCACGTAGCTACATGTCAG 59.079 52.381 23.21 8.50 45.94 3.51
234 235 1.271102 TGTGCACGTAGCTACATGTCA 59.729 47.619 23.21 16.60 45.94 3.58
235 236 1.990799 TGTGCACGTAGCTACATGTC 58.009 50.000 23.21 14.40 45.94 3.06
236 237 2.672961 ATGTGCACGTAGCTACATGT 57.327 45.000 23.21 11.27 45.94 3.21
237 238 5.463499 TTTAATGTGCACGTAGCTACATG 57.537 39.130 23.21 19.46 45.94 3.21
238 239 7.279090 TGTTATTTAATGTGCACGTAGCTACAT 59.721 33.333 23.21 5.52 45.94 2.29
239 240 6.590677 TGTTATTTAATGTGCACGTAGCTACA 59.409 34.615 23.21 5.93 45.94 2.74
240 241 6.996106 TGTTATTTAATGTGCACGTAGCTAC 58.004 36.000 12.96 14.19 45.94 3.58
241 242 6.237996 GCTGTTATTTAATGTGCACGTAGCTA 60.238 38.462 12.96 0.00 45.94 3.32
242 243 5.447279 GCTGTTATTTAATGTGCACGTAGCT 60.447 40.000 12.96 0.00 45.94 3.32
243 244 4.728608 GCTGTTATTTAATGTGCACGTAGC 59.271 41.667 12.96 11.01 45.96 3.58
244 245 5.263185 GGCTGTTATTTAATGTGCACGTAG 58.737 41.667 12.96 4.41 0.00 3.51
245 246 4.095185 GGGCTGTTATTTAATGTGCACGTA 59.905 41.667 12.96 3.79 0.00 3.57
246 247 3.119637 GGGCTGTTATTTAATGTGCACGT 60.120 43.478 13.13 9.52 0.00 4.49
247 248 3.119673 TGGGCTGTTATTTAATGTGCACG 60.120 43.478 13.13 0.00 0.00 5.34
248 249 4.448537 TGGGCTGTTATTTAATGTGCAC 57.551 40.909 10.75 10.75 0.00 4.57
249 250 5.674052 AATGGGCTGTTATTTAATGTGCA 57.326 34.783 0.00 0.00 0.00 4.57
250 251 8.661352 ATTTAATGGGCTGTTATTTAATGTGC 57.339 30.769 0.00 0.00 0.00 4.57
278 279 0.869730 ACGTCAAAACATACACGGCC 59.130 50.000 0.00 0.00 36.56 6.13
282 283 7.739295 ACATTCTATGACGTCAAAACATACAC 58.261 34.615 24.13 0.00 0.00 2.90
290 291 6.038825 ACAACCAAACATTCTATGACGTCAAA 59.961 34.615 24.13 13.13 0.00 2.69
300 301 6.936279 TCCAAACAAACAACCAAACATTCTA 58.064 32.000 0.00 0.00 0.00 2.10
303 304 7.459795 AAATCCAAACAAACAACCAAACATT 57.540 28.000 0.00 0.00 0.00 2.71
315 316 7.819415 TGTACACATTGTGAAAATCCAAACAAA 59.181 29.630 23.12 0.00 36.23 2.83
319 320 8.824781 CAAATGTACACATTGTGAAAATCCAAA 58.175 29.630 23.12 0.00 45.06 3.28
320 321 7.984050 ACAAATGTACACATTGTGAAAATCCAA 59.016 29.630 23.12 0.91 45.06 3.53
323 324 8.572828 TGACAAATGTACACATTGTGAAAATC 57.427 30.769 25.40 14.46 45.06 2.17
356 357 8.994429 TTAATCAACACCATTATTTTGCGAAT 57.006 26.923 0.00 0.00 0.00 3.34
399 400 4.020662 GGGACCTATGAAAATTTGCCAACA 60.021 41.667 0.00 0.00 0.00 3.33
403 404 4.584743 CCTAGGGACCTATGAAAATTTGCC 59.415 45.833 0.00 0.00 0.00 4.52
413 414 0.680061 GTTCGGCCTAGGGACCTATG 59.320 60.000 11.72 0.00 0.00 2.23
432 433 0.532862 AAATCCGAGCCATACCGCAG 60.533 55.000 0.00 0.00 0.00 5.18
445 446 2.569059 ACATCATCTGAGCCAAATCCG 58.431 47.619 0.00 0.00 0.00 4.18
458 459 6.027749 GGTTGATAACGTCCAAAACATCATC 58.972 40.000 0.00 0.00 0.00 2.92
460 461 4.083749 CGGTTGATAACGTCCAAAACATCA 60.084 41.667 0.00 0.00 0.00 3.07
464 465 3.248125 TCACGGTTGATAACGTCCAAAAC 59.752 43.478 0.00 0.00 42.04 2.43
522 523 5.880054 ACCATACACCATTTTCTTCTTCG 57.120 39.130 0.00 0.00 0.00 3.79
529 530 5.049749 GCAACCAAAACCATACACCATTTTC 60.050 40.000 0.00 0.00 0.00 2.29
540 541 4.071423 GGCAATAAAGCAACCAAAACCAT 58.929 39.130 0.00 0.00 35.83 3.55
563 565 0.671781 CTCTAGTGTGCTTGCCGCTT 60.672 55.000 0.00 0.00 40.11 4.68
593 595 4.164030 TCTGCACCATACACCATTATGAGT 59.836 41.667 0.00 0.00 31.96 3.41
601 603 2.617788 GGTTCATCTGCACCATACACCA 60.618 50.000 0.00 0.00 31.44 4.17
602 604 2.017049 GGTTCATCTGCACCATACACC 58.983 52.381 0.00 0.00 31.44 4.16
604 606 3.244875 ACTTGGTTCATCTGCACCATACA 60.245 43.478 2.53 0.00 40.82 2.29
608 610 3.146066 GTTACTTGGTTCATCTGCACCA 58.854 45.455 0.00 0.00 39.51 4.17
609 611 3.146066 TGTTACTTGGTTCATCTGCACC 58.854 45.455 0.00 0.00 31.76 5.01
610 612 4.537015 GTTGTTACTTGGTTCATCTGCAC 58.463 43.478 0.00 0.00 0.00 4.57
621 630 4.918810 AAAGCTGAAGGTTGTTACTTGG 57.081 40.909 0.00 0.00 35.72 3.61
623 632 7.875327 TTTCTAAAGCTGAAGGTTGTTACTT 57.125 32.000 0.00 0.00 35.72 2.24
624 633 7.497925 CTTTCTAAAGCTGAAGGTTGTTACT 57.502 36.000 0.00 0.00 35.72 2.24
639 648 7.699812 GGCTTATGAGTGATTTGCTTTCTAAAG 59.300 37.037 0.00 0.00 39.03 1.85
640 649 7.538575 GGCTTATGAGTGATTTGCTTTCTAAA 58.461 34.615 0.00 0.00 0.00 1.85
641 650 6.183360 CGGCTTATGAGTGATTTGCTTTCTAA 60.183 38.462 0.00 0.00 0.00 2.10
642 651 5.294306 CGGCTTATGAGTGATTTGCTTTCTA 59.706 40.000 0.00 0.00 0.00 2.10
643 652 4.095483 CGGCTTATGAGTGATTTGCTTTCT 59.905 41.667 0.00 0.00 0.00 2.52
644 653 4.094887 TCGGCTTATGAGTGATTTGCTTTC 59.905 41.667 0.00 0.00 0.00 2.62
645 654 4.009675 TCGGCTTATGAGTGATTTGCTTT 58.990 39.130 0.00 0.00 0.00 3.51
646 655 3.375299 GTCGGCTTATGAGTGATTTGCTT 59.625 43.478 0.00 0.00 0.00 3.91
647 656 2.939103 GTCGGCTTATGAGTGATTTGCT 59.061 45.455 0.00 0.00 0.00 3.91
648 657 2.285834 CGTCGGCTTATGAGTGATTTGC 60.286 50.000 0.00 0.00 0.00 3.68
649 658 2.930040 ACGTCGGCTTATGAGTGATTTG 59.070 45.455 0.00 0.00 0.00 2.32
650 659 3.247006 ACGTCGGCTTATGAGTGATTT 57.753 42.857 0.00 0.00 0.00 2.17
651 660 2.961526 ACGTCGGCTTATGAGTGATT 57.038 45.000 0.00 0.00 0.00 2.57
652 661 2.686405 TGTACGTCGGCTTATGAGTGAT 59.314 45.455 0.00 0.00 0.00 3.06
653 662 2.086094 TGTACGTCGGCTTATGAGTGA 58.914 47.619 0.00 0.00 0.00 3.41
654 663 2.554806 TGTACGTCGGCTTATGAGTG 57.445 50.000 0.00 0.00 0.00 3.51
655 664 2.686405 TGATGTACGTCGGCTTATGAGT 59.314 45.455 10.44 0.00 0.00 3.41
667 676 3.006967 AGGCAAGAGAAGTTGATGTACGT 59.993 43.478 0.00 0.00 0.00 3.57
673 682 1.808945 CGCAAGGCAAGAGAAGTTGAT 59.191 47.619 0.00 0.00 0.00 2.57
674 683 1.229428 CGCAAGGCAAGAGAAGTTGA 58.771 50.000 0.00 0.00 0.00 3.18
717 733 1.622607 ATCGGGGCTCGTGGATGAAA 61.623 55.000 6.68 0.00 40.32 2.69
728 744 0.389391 CTTGATGTACGATCGGGGCT 59.611 55.000 20.98 0.00 0.00 5.19
733 752 1.256376 GTGCTGCTTGATGTACGATCG 59.744 52.381 14.88 14.88 0.00 3.69
759 780 2.452813 CGCGCGACCACAGCTTTAT 61.453 57.895 28.94 0.00 0.00 1.40
773 794 1.920762 CCTTCGAGAAAGATCGCGC 59.079 57.895 0.00 0.00 46.68 6.86
775 796 1.204792 GAGCCTTCGAGAAAGATCGC 58.795 55.000 0.00 0.00 42.43 4.58
815 836 4.384318 GGGAGATGGGTTTAGAAGGTTCTC 60.384 50.000 0.00 0.00 38.70 2.87
902 939 2.612972 GGATTCTTGTGGTGAGCGAGAA 60.613 50.000 0.00 0.00 39.74 2.87
941 981 4.540099 TCTTTCCCTCTCTCTCTCTCTCTT 59.460 45.833 0.00 0.00 0.00 2.85
983 1073 4.151883 AGCCATGGTATCTCTCTTCTCTC 58.848 47.826 14.67 0.00 0.00 3.20
984 1074 4.197559 AGCCATGGTATCTCTCTTCTCT 57.802 45.455 14.67 0.00 0.00 3.10
985 1075 4.262420 GGAAGCCATGGTATCTCTCTTCTC 60.262 50.000 14.67 6.26 31.77 2.87
986 1076 3.645687 GGAAGCCATGGTATCTCTCTTCT 59.354 47.826 14.67 0.00 31.77 2.85
987 1077 3.553922 CGGAAGCCATGGTATCTCTCTTC 60.554 52.174 14.67 14.45 0.00 2.87
988 1078 2.366916 CGGAAGCCATGGTATCTCTCTT 59.633 50.000 14.67 5.90 0.00 2.85
1127 1239 3.019003 TAGCGGCTGACCTCCTTGC 62.019 63.158 13.86 0.00 0.00 4.01
1175 1293 1.078143 AAGAAGCTGGGGATGACGC 60.078 57.895 0.00 0.00 0.00 5.19
1221 1344 2.506881 CGCAAAGAAATGGCGGCC 60.507 61.111 13.32 13.32 46.46 6.13
1228 1361 4.035208 ACTTCAGAACGAACGCAAAGAAAT 59.965 37.500 0.00 0.00 0.00 2.17
1650 4827 1.414181 TCTTCATCTCGGCCTTGATCC 59.586 52.381 0.00 0.00 0.00 3.36
1755 4946 1.032794 CTCCATGAGCACTACCGCTA 58.967 55.000 0.00 0.00 44.01 4.26
1758 4951 0.179100 CACCTCCATGAGCACTACCG 60.179 60.000 0.00 0.00 0.00 4.02
1831 5034 4.712122 ACGAAGCAAAACAAGGAAGAAA 57.288 36.364 0.00 0.00 0.00 2.52
1900 5120 9.225436 GAACTTGAGGAAATTAAGAGAGTTCAT 57.775 33.333 0.00 0.00 39.88 2.57
1901 5121 7.385205 CGAACTTGAGGAAATTAAGAGAGTTCA 59.615 37.037 11.47 0.00 40.03 3.18
1932 5160 1.666888 CCACCAAAGCAAGTTCATCGC 60.667 52.381 0.00 0.00 0.00 4.58
1933 5161 1.608590 ACCACCAAAGCAAGTTCATCG 59.391 47.619 0.00 0.00 0.00 3.84
1963 5191 7.177216 ACTTGAGGAAATCAACAGAATTGCATA 59.823 33.333 0.00 0.00 43.09 3.14
1990 5218 5.836898 ACCAAATCAGTTCATCATATGCCAT 59.163 36.000 0.00 0.00 0.00 4.40
2112 5451 3.788227 AGTAGTTCATCAGGCCAAACA 57.212 42.857 5.01 0.00 0.00 2.83
2142 5481 6.987404 GGACGAGAAAAGATAGAAAGGCTTAT 59.013 38.462 0.00 0.00 0.00 1.73
2254 5783 9.462174 CAAGCAAAAATCATCAACTTGTAACTA 57.538 29.630 0.00 0.00 0.00 2.24
2262 5791 4.952460 ACAGCAAGCAAAAATCATCAACT 58.048 34.783 0.00 0.00 0.00 3.16
2350 7140 5.106555 ACTCAAGGATAAGCACACAAAATCG 60.107 40.000 0.00 0.00 0.00 3.34
2351 7141 6.259550 ACTCAAGGATAAGCACACAAAATC 57.740 37.500 0.00 0.00 0.00 2.17
2401 7191 4.618920 ACCCTACAACTACAAACTGGAG 57.381 45.455 0.00 0.00 33.50 3.86
2591 7406 5.186992 TGGAAAATCGACAGAGTTCAGGATA 59.813 40.000 0.00 0.00 33.08 2.59
2645 7472 3.003689 AGTGACGAATTTTCACCAGCAAG 59.996 43.478 14.44 0.00 43.85 4.01
2695 7522 4.778534 ATCAGTTCATTGCCTCAAACAG 57.221 40.909 0.00 0.00 0.00 3.16
2696 7523 5.291178 CAAATCAGTTCATTGCCTCAAACA 58.709 37.500 0.00 0.00 0.00 2.83
2697 7524 4.687483 CCAAATCAGTTCATTGCCTCAAAC 59.313 41.667 0.00 0.00 0.00 2.93
2698 7525 4.344679 ACCAAATCAGTTCATTGCCTCAAA 59.655 37.500 0.00 0.00 0.00 2.69
2699 7526 3.896888 ACCAAATCAGTTCATTGCCTCAA 59.103 39.130 0.00 0.00 0.00 3.02
2700 7527 3.499338 ACCAAATCAGTTCATTGCCTCA 58.501 40.909 0.00 0.00 0.00 3.86
2701 7528 4.702131 ACTACCAAATCAGTTCATTGCCTC 59.298 41.667 0.00 0.00 0.00 4.70
2702 7529 4.460382 CACTACCAAATCAGTTCATTGCCT 59.540 41.667 0.00 0.00 0.00 4.75



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.