Multiple sequence alignment - TraesCS7D01G178600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G178600 chr7D 100.000 3425 0 0 1 3425 131653290 131649866 0.000000e+00 6325.0
1 TraesCS7D01G178600 chr7D 92.593 135 10 0 13 147 188583182 188583048 9.700000e-46 195.0
2 TraesCS7D01G178600 chr7B 94.535 2873 109 13 582 3424 93068403 93065549 0.000000e+00 4392.0
3 TraesCS7D01G178600 chr7B 91.892 296 21 3 295 588 876656 876362 8.850000e-111 411.0
4 TraesCS7D01G178600 chr7B 91.319 288 24 1 295 582 685400188 685399902 3.200000e-105 392.0
5 TraesCS7D01G178600 chr7B 91.319 288 23 2 295 581 702326311 702326025 3.200000e-105 392.0
6 TraesCS7D01G178600 chr7A 91.667 2112 93 35 582 2683 130401109 130399071 0.000000e+00 2848.0
7 TraesCS7D01G178600 chr7A 91.615 799 38 3 2655 3425 130399033 130398236 0.000000e+00 1077.0
8 TraesCS7D01G178600 chr7A 97.143 35 1 0 2649 2683 130399072 130399038 3.690000e-05 60.2
9 TraesCS7D01G178600 chr1D 87.483 1510 144 28 952 2448 400792400 400793877 0.000000e+00 1700.0
10 TraesCS7D01G178600 chr1D 89.087 953 92 4 1524 2470 40598009 40598955 0.000000e+00 1173.0
11 TraesCS7D01G178600 chr1D 89.372 414 26 8 1026 1432 40597393 40597795 3.940000e-139 505.0
12 TraesCS7D01G178600 chr1D 98.667 150 1 1 147 296 254417326 254417474 7.290000e-67 265.0
13 TraesCS7D01G178600 chr1D 91.912 136 10 1 13 148 408542939 408542805 4.510000e-44 189.0
14 TraesCS7D01G178600 chr1B 87.178 1513 149 27 956 2456 537771457 537772936 0.000000e+00 1677.0
15 TraesCS7D01G178600 chr1B 87.214 1486 158 24 1008 2478 60109111 60107643 0.000000e+00 1663.0
16 TraesCS7D01G178600 chr1B 87.421 954 106 6 1524 2470 60473811 60474757 0.000000e+00 1085.0
17 TraesCS7D01G178600 chr1B 92.123 292 20 3 295 584 678293114 678292824 3.180000e-110 409.0
18 TraesCS7D01G178600 chr1B 95.631 206 9 0 1223 1428 60473293 60473498 7.080000e-87 331.0
19 TraesCS7D01G178600 chr1B 98.261 115 2 0 1026 1140 60456829 60456943 5.800000e-48 202.0
20 TraesCS7D01G178600 chr1A 85.677 1550 157 37 957 2478 39872189 39870677 0.000000e+00 1572.0
21 TraesCS7D01G178600 chr1A 89.794 970 89 6 1482 2448 497083769 497084731 0.000000e+00 1234.0
22 TraesCS7D01G178600 chr1A 88.981 481 41 8 952 1423 497083254 497083731 4.930000e-163 584.0
23 TraesCS7D01G178600 chr1A 99.333 150 1 0 147 296 554456466 554456615 4.360000e-69 272.0
24 TraesCS7D01G178600 chr1A 98.667 150 2 0 147 296 480924116 480924265 2.030000e-67 267.0
25 TraesCS7D01G178600 chr1A 92.593 135 9 1 13 147 3544563 3544696 3.490000e-45 193.0
26 TraesCS7D01G178600 chr5B 91.667 288 22 2 295 581 250231392 250231106 6.890000e-107 398.0
27 TraesCS7D01G178600 chr4B 91.667 288 22 2 295 581 378761962 378762248 6.890000e-107 398.0
28 TraesCS7D01G178600 chr4B 91.667 288 22 2 295 581 468237178 468236892 6.890000e-107 398.0
29 TraesCS7D01G178600 chr4B 91.319 288 23 2 295 581 90454956 90455242 3.200000e-105 392.0
30 TraesCS7D01G178600 chr4B 90.299 134 12 1 16 148 94769578 94769445 1.260000e-39 174.0
31 TraesCS7D01G178600 chr4B 82.184 174 27 4 1228 1399 570138768 570138939 2.750000e-31 147.0
32 TraesCS7D01G178600 chr3A 91.638 287 22 2 296 581 662832256 662831971 2.480000e-106 396.0
33 TraesCS7D01G178600 chr5D 100.000 150 0 0 147 296 512409288 512409139 9.360000e-71 278.0
34 TraesCS7D01G178600 chr5D 100.000 150 0 0 147 296 512416225 512416076 9.360000e-71 278.0
35 TraesCS7D01G178600 chr5D 99.333 150 1 0 147 296 503287560 503287709 4.360000e-69 272.0
36 TraesCS7D01G178600 chr5D 98.667 150 1 1 147 296 6180685 6180537 7.290000e-67 265.0
37 TraesCS7D01G178600 chr2D 100.000 150 0 0 147 296 648664552 648664403 9.360000e-71 278.0
38 TraesCS7D01G178600 chr2D 98.667 150 2 0 147 296 9785404 9785553 2.030000e-67 267.0
39 TraesCS7D01G178600 chr2D 94.030 134 6 1 14 147 602013638 602013769 5.800000e-48 202.0
40 TraesCS7D01G178600 chr3B 94.815 135 5 1 14 148 150154336 150154204 3.460000e-50 209.0
41 TraesCS7D01G178600 chr6D 92.593 135 10 0 13 147 81775821 81775687 9.700000e-46 195.0
42 TraesCS7D01G178600 chr6D 92.593 135 8 1 13 147 436673031 436672899 3.490000e-45 193.0
43 TraesCS7D01G178600 chr3D 90.647 139 10 2 12 148 510316099 510315962 7.550000e-42 182.0
44 TraesCS7D01G178600 chr3D 82.418 182 26 6 1227 1405 12300251 12300073 1.650000e-33 154.0
45 TraesCS7D01G178600 chr3D 82.955 176 24 6 1227 1399 12374584 12374756 1.650000e-33 154.0
46 TraesCS7D01G178600 chr2A 86.364 66 8 1 3153 3217 543313475 543313540 1.710000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G178600 chr7D 131649866 131653290 3424 True 6325.0 6325 100.0000 1 3425 1 chr7D.!!$R1 3424
1 TraesCS7D01G178600 chr7B 93065549 93068403 2854 True 4392.0 4392 94.5350 582 3424 1 chr7B.!!$R2 2842
2 TraesCS7D01G178600 chr7A 130398236 130401109 2873 True 1328.4 2848 93.4750 582 3425 3 chr7A.!!$R1 2843
3 TraesCS7D01G178600 chr1D 400792400 400793877 1477 False 1700.0 1700 87.4830 952 2448 1 chr1D.!!$F2 1496
4 TraesCS7D01G178600 chr1D 40597393 40598955 1562 False 839.0 1173 89.2295 1026 2470 2 chr1D.!!$F3 1444
5 TraesCS7D01G178600 chr1B 537771457 537772936 1479 False 1677.0 1677 87.1780 956 2456 1 chr1B.!!$F2 1500
6 TraesCS7D01G178600 chr1B 60107643 60109111 1468 True 1663.0 1663 87.2140 1008 2478 1 chr1B.!!$R1 1470
7 TraesCS7D01G178600 chr1B 60473293 60474757 1464 False 708.0 1085 91.5260 1223 2470 2 chr1B.!!$F3 1247
8 TraesCS7D01G178600 chr1A 39870677 39872189 1512 True 1572.0 1572 85.6770 957 2478 1 chr1A.!!$R1 1521
9 TraesCS7D01G178600 chr1A 497083254 497084731 1477 False 909.0 1234 89.3875 952 2448 2 chr1A.!!$F4 1496

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
47 48 0.038166 AGCTCGGCCTCCAAATTCAA 59.962 50.0 0.00 0.0 0.00 2.69 F
215 216 0.105408 CCTTTGTTTGGCAAGCTGCT 59.895 50.0 15.19 0.0 44.28 4.24 F
1399 1441 0.112412 ACAACGGGCCCAAGATCTTT 59.888 50.0 24.92 0.0 0.00 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1659 1987 0.313043 ACTTGATGTCGAACGTCGGT 59.687 50.000 0.0 0.0 40.88 4.69 R
1968 2296 1.342496 GTGCCGATGGAGATGATGAGA 59.658 52.381 0.0 0.0 0.00 3.27 R
2705 3109 2.113807 TGAGTGAGATGGACCTCATGG 58.886 52.381 0.0 0.0 44.09 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.984146 TTTTTCCCCGGAAATCCATTTT 57.016 36.364 0.73 0.00 42.71 1.82
26 27 3.971245 TTTCCCCGGAAATCCATTTTG 57.029 42.857 0.73 0.00 38.95 2.44
27 28 1.859302 TCCCCGGAAATCCATTTTGG 58.141 50.000 0.73 0.00 39.43 3.28
35 36 4.319133 TCCATTTTGGAGCTCGGC 57.681 55.556 7.83 0.00 42.67 5.54
36 37 1.378514 TCCATTTTGGAGCTCGGCC 60.379 57.895 7.83 0.00 42.67 6.13
37 38 1.379044 CCATTTTGGAGCTCGGCCT 60.379 57.895 7.83 0.00 40.96 5.19
38 39 1.379642 CCATTTTGGAGCTCGGCCTC 61.380 60.000 7.83 0.00 40.96 4.70
44 45 4.645809 GAGCTCGGCCTCCAAATT 57.354 55.556 0.00 0.00 0.00 1.82
45 46 2.398803 GAGCTCGGCCTCCAAATTC 58.601 57.895 0.00 0.00 0.00 2.17
46 47 0.392998 GAGCTCGGCCTCCAAATTCA 60.393 55.000 0.00 0.00 0.00 2.57
47 48 0.038166 AGCTCGGCCTCCAAATTCAA 59.962 50.000 0.00 0.00 0.00 2.69
48 49 0.887933 GCTCGGCCTCCAAATTCAAA 59.112 50.000 0.00 0.00 0.00 2.69
49 50 1.478105 GCTCGGCCTCCAAATTCAAAT 59.522 47.619 0.00 0.00 0.00 2.32
50 51 2.094026 GCTCGGCCTCCAAATTCAAATT 60.094 45.455 0.00 0.00 0.00 1.82
51 52 3.617288 GCTCGGCCTCCAAATTCAAATTT 60.617 43.478 0.00 0.00 39.07 1.82
52 53 4.381505 GCTCGGCCTCCAAATTCAAATTTA 60.382 41.667 0.00 0.00 36.52 1.40
53 54 5.719173 CTCGGCCTCCAAATTCAAATTTAA 58.281 37.500 0.00 0.00 36.52 1.52
54 55 6.102897 TCGGCCTCCAAATTCAAATTTAAA 57.897 33.333 0.00 0.00 36.52 1.52
55 56 6.525629 TCGGCCTCCAAATTCAAATTTAAAA 58.474 32.000 0.00 0.00 36.52 1.52
56 57 7.164803 TCGGCCTCCAAATTCAAATTTAAAAT 58.835 30.769 0.00 0.00 36.52 1.82
57 58 7.663493 TCGGCCTCCAAATTCAAATTTAAAATT 59.337 29.630 0.00 0.00 36.52 1.82
58 59 8.296000 CGGCCTCCAAATTCAAATTTAAAATTT 58.704 29.630 13.65 13.65 36.52 1.82
59 60 9.624697 GGCCTCCAAATTCAAATTTAAAATTTC 57.375 29.630 15.40 8.20 36.52 2.17
129 130 7.969536 ACAGATATACATGAAGGCATAACAC 57.030 36.000 0.00 0.00 32.27 3.32
130 131 7.508687 ACAGATATACATGAAGGCATAACACA 58.491 34.615 0.00 0.00 32.27 3.72
131 132 7.442364 ACAGATATACATGAAGGCATAACACAC 59.558 37.037 0.00 0.00 32.27 3.82
132 133 7.442062 CAGATATACATGAAGGCATAACACACA 59.558 37.037 0.00 0.00 32.27 3.72
133 134 8.159447 AGATATACATGAAGGCATAACACACAT 58.841 33.333 0.00 0.00 32.27 3.21
134 135 4.707030 ACATGAAGGCATAACACACATG 57.293 40.909 0.00 0.00 39.27 3.21
135 136 4.081406 ACATGAAGGCATAACACACATGT 58.919 39.130 0.00 0.00 40.84 3.21
136 137 4.082625 ACATGAAGGCATAACACACATGTG 60.083 41.667 24.25 24.25 42.90 3.21
137 138 4.082625 CATGAAGGCATAACACACATGTGT 60.083 41.667 25.76 25.76 46.35 3.72
138 139 6.126914 CATGAAGGCATAACACACATGTGTG 61.127 44.000 43.01 43.01 44.88 3.82
153 154 7.036669 CACATGTGTGTAAAATTTCCAATCG 57.963 36.000 18.03 0.00 40.96 3.34
154 155 6.640499 CACATGTGTGTAAAATTTCCAATCGT 59.360 34.615 18.03 0.00 40.96 3.73
155 156 6.640499 ACATGTGTGTAAAATTTCCAATCGTG 59.360 34.615 0.00 3.53 36.63 4.35
156 157 8.210954 ACATGTGTGTAAAATTTCCAATCGTGG 61.211 37.037 0.00 0.00 40.86 4.94
170 171 5.947228 CAATCGTGGATATTATGCCTGTT 57.053 39.130 0.00 0.00 0.00 3.16
172 173 7.615582 CAATCGTGGATATTATGCCTGTTAT 57.384 36.000 0.00 0.00 0.00 1.89
173 174 8.716646 CAATCGTGGATATTATGCCTGTTATA 57.283 34.615 0.00 0.00 0.00 0.98
174 175 8.604035 CAATCGTGGATATTATGCCTGTTATAC 58.396 37.037 0.00 0.00 0.00 1.47
175 176 6.636705 TCGTGGATATTATGCCTGTTATACC 58.363 40.000 0.00 0.00 0.00 2.73
176 177 6.439375 TCGTGGATATTATGCCTGTTATACCT 59.561 38.462 0.00 0.00 0.00 3.08
177 178 6.757010 CGTGGATATTATGCCTGTTATACCTC 59.243 42.308 0.00 0.00 0.00 3.85
178 179 7.363880 CGTGGATATTATGCCTGTTATACCTCT 60.364 40.741 0.00 0.00 0.00 3.69
179 180 8.978472 GTGGATATTATGCCTGTTATACCTCTA 58.022 37.037 0.00 0.00 0.00 2.43
180 181 9.729550 TGGATATTATGCCTGTTATACCTCTAT 57.270 33.333 0.00 0.00 0.00 1.98
214 215 2.608640 CCTTTGTTTGGCAAGCTGC 58.391 52.632 15.19 0.00 44.08 5.25
215 216 0.105408 CCTTTGTTTGGCAAGCTGCT 59.895 50.000 15.19 0.00 44.28 4.24
216 217 1.214367 CTTTGTTTGGCAAGCTGCTG 58.786 50.000 15.19 0.00 44.28 4.41
217 218 0.536260 TTTGTTTGGCAAGCTGCTGT 59.464 45.000 15.19 0.00 44.28 4.40
218 219 1.397672 TTGTTTGGCAAGCTGCTGTA 58.602 45.000 15.19 0.00 44.28 2.74
219 220 1.397672 TGTTTGGCAAGCTGCTGTAA 58.602 45.000 15.19 0.00 44.28 2.41
220 221 1.337703 TGTTTGGCAAGCTGCTGTAAG 59.662 47.619 15.19 0.00 44.28 2.34
221 222 1.338020 GTTTGGCAAGCTGCTGTAAGT 59.662 47.619 1.35 0.00 44.28 2.24
222 223 1.691196 TTGGCAAGCTGCTGTAAGTT 58.309 45.000 1.35 0.00 44.28 2.66
223 224 1.691196 TGGCAAGCTGCTGTAAGTTT 58.309 45.000 1.35 0.00 44.28 2.66
224 225 2.031120 TGGCAAGCTGCTGTAAGTTTT 58.969 42.857 1.35 0.00 44.28 2.43
225 226 2.034558 TGGCAAGCTGCTGTAAGTTTTC 59.965 45.455 1.35 0.00 44.28 2.29
226 227 2.310577 GCAAGCTGCTGTAAGTTTTCG 58.689 47.619 1.35 0.00 40.96 3.46
227 228 2.032030 GCAAGCTGCTGTAAGTTTTCGA 60.032 45.455 1.35 0.00 40.96 3.71
228 229 3.365364 GCAAGCTGCTGTAAGTTTTCGAT 60.365 43.478 1.35 0.00 40.96 3.59
229 230 4.153986 CAAGCTGCTGTAAGTTTTCGATG 58.846 43.478 1.35 0.00 35.30 3.84
230 231 3.664107 AGCTGCTGTAAGTTTTCGATGA 58.336 40.909 0.00 0.00 35.30 2.92
231 232 4.065088 AGCTGCTGTAAGTTTTCGATGAA 58.935 39.130 0.00 0.00 35.30 2.57
232 233 4.515191 AGCTGCTGTAAGTTTTCGATGAAA 59.485 37.500 0.00 0.00 35.30 2.69
233 234 5.182001 AGCTGCTGTAAGTTTTCGATGAAAT 59.818 36.000 0.00 0.00 35.30 2.17
234 235 5.509622 GCTGCTGTAAGTTTTCGATGAAATC 59.490 40.000 0.00 0.00 36.55 2.17
235 236 6.621596 GCTGCTGTAAGTTTTCGATGAAATCT 60.622 38.462 0.00 0.00 37.50 2.40
236 237 7.202016 TGCTGTAAGTTTTCGATGAAATCTT 57.798 32.000 15.76 15.76 41.45 2.40
237 238 7.648142 TGCTGTAAGTTTTCGATGAAATCTTT 58.352 30.769 16.37 5.36 40.12 2.52
238 239 8.779303 TGCTGTAAGTTTTCGATGAAATCTTTA 58.221 29.630 16.37 8.86 40.12 1.85
239 240 9.267096 GCTGTAAGTTTTCGATGAAATCTTTAG 57.733 33.333 16.37 15.35 40.12 1.85
245 246 9.930693 AGTTTTCGATGAAATCTTTAGTACTCT 57.069 29.630 0.00 0.00 42.58 3.24
246 247 9.959775 GTTTTCGATGAAATCTTTAGTACTCTG 57.040 33.333 0.00 0.00 42.58 3.35
247 248 9.706691 TTTTCGATGAAATCTTTAGTACTCTGT 57.293 29.630 0.00 0.00 42.58 3.41
250 251 9.952188 TCGATGAAATCTTTAGTACTCTGTATG 57.048 33.333 0.00 0.00 42.58 2.39
251 252 8.695284 CGATGAAATCTTTAGTACTCTGTATGC 58.305 37.037 0.00 0.00 42.58 3.14
252 253 8.894768 ATGAAATCTTTAGTACTCTGTATGCC 57.105 34.615 0.00 0.00 0.00 4.40
253 254 7.847096 TGAAATCTTTAGTACTCTGTATGCCA 58.153 34.615 0.00 0.00 0.00 4.92
254 255 8.318412 TGAAATCTTTAGTACTCTGTATGCCAA 58.682 33.333 0.00 0.00 0.00 4.52
255 256 9.162764 GAAATCTTTAGTACTCTGTATGCCAAA 57.837 33.333 0.00 0.00 0.00 3.28
256 257 9.686683 AAATCTTTAGTACTCTGTATGCCAAAT 57.313 29.630 0.00 0.00 0.00 2.32
257 258 9.686683 AATCTTTAGTACTCTGTATGCCAAATT 57.313 29.630 0.00 0.00 0.00 1.82
258 259 8.492673 TCTTTAGTACTCTGTATGCCAAATTG 57.507 34.615 0.00 0.00 0.00 2.32
259 260 8.318412 TCTTTAGTACTCTGTATGCCAAATTGA 58.682 33.333 0.00 0.00 0.00 2.57
260 261 8.856153 TTTAGTACTCTGTATGCCAAATTGAA 57.144 30.769 0.00 0.00 0.00 2.69
261 262 9.461312 TTTAGTACTCTGTATGCCAAATTGAAT 57.539 29.630 0.00 0.00 0.00 2.57
262 263 7.325660 AGTACTCTGTATGCCAAATTGAATG 57.674 36.000 0.00 0.00 0.00 2.67
263 264 7.112122 AGTACTCTGTATGCCAAATTGAATGA 58.888 34.615 0.00 0.00 0.00 2.57
264 265 7.776969 AGTACTCTGTATGCCAAATTGAATGAT 59.223 33.333 0.00 0.00 0.00 2.45
265 266 6.802608 ACTCTGTATGCCAAATTGAATGATG 58.197 36.000 0.00 0.00 0.00 3.07
266 267 6.379133 ACTCTGTATGCCAAATTGAATGATGT 59.621 34.615 0.00 0.00 0.00 3.06
267 268 6.566141 TCTGTATGCCAAATTGAATGATGTG 58.434 36.000 0.00 0.00 0.00 3.21
268 269 6.153170 TCTGTATGCCAAATTGAATGATGTGT 59.847 34.615 0.00 0.00 0.00 3.72
269 270 6.699366 TGTATGCCAAATTGAATGATGTGTT 58.301 32.000 0.00 0.00 0.00 3.32
270 271 6.812656 TGTATGCCAAATTGAATGATGTGTTC 59.187 34.615 0.00 0.00 0.00 3.18
271 272 5.211174 TGCCAAATTGAATGATGTGTTCA 57.789 34.783 0.00 0.00 39.12 3.18
310 311 9.892130 TTAAAAATGGGTGTGTAAAATTTCAGT 57.108 25.926 0.00 0.00 0.00 3.41
311 312 8.800370 AAAAATGGGTGTGTAAAATTTCAGTT 57.200 26.923 0.00 0.00 0.00 3.16
312 313 8.432110 AAAATGGGTGTGTAAAATTTCAGTTC 57.568 30.769 0.00 0.00 0.00 3.01
313 314 6.723298 ATGGGTGTGTAAAATTTCAGTTCA 57.277 33.333 0.00 0.00 0.00 3.18
314 315 6.531503 TGGGTGTGTAAAATTTCAGTTCAA 57.468 33.333 0.00 0.00 0.00 2.69
315 316 6.936279 TGGGTGTGTAAAATTTCAGTTCAAA 58.064 32.000 0.00 0.00 0.00 2.69
316 317 7.386851 TGGGTGTGTAAAATTTCAGTTCAAAA 58.613 30.769 0.00 0.00 0.00 2.44
317 318 8.043710 TGGGTGTGTAAAATTTCAGTTCAAAAT 58.956 29.630 0.00 0.00 0.00 1.82
318 319 9.535878 GGGTGTGTAAAATTTCAGTTCAAAATA 57.464 29.630 0.00 0.00 0.00 1.40
333 334 6.942886 TTCAAAATACATTGAAATGACGGC 57.057 33.333 9.94 0.00 44.11 5.68
334 335 6.266168 TCAAAATACATTGAAATGACGGCT 57.734 33.333 9.94 0.00 39.67 5.52
335 336 6.092092 TCAAAATACATTGAAATGACGGCTG 58.908 36.000 9.94 0.00 39.67 4.85
336 337 3.698029 ATACATTGAAATGACGGCTGC 57.302 42.857 9.94 0.00 39.67 5.25
337 338 0.168788 ACATTGAAATGACGGCTGCG 59.831 50.000 9.94 0.00 39.67 5.18
338 339 1.135699 CATTGAAATGACGGCTGCGC 61.136 55.000 0.00 0.00 38.70 6.09
339 340 1.585267 ATTGAAATGACGGCTGCGCA 61.585 50.000 10.98 10.98 0.00 6.09
340 341 1.790090 TTGAAATGACGGCTGCGCAA 61.790 50.000 13.05 0.00 0.00 4.85
341 342 1.081509 GAAATGACGGCTGCGCAAA 60.082 52.632 13.05 0.00 0.00 3.68
342 343 0.662970 GAAATGACGGCTGCGCAAAA 60.663 50.000 13.05 0.00 0.00 2.44
343 344 0.249238 AAATGACGGCTGCGCAAAAA 60.249 45.000 13.05 0.00 0.00 1.94
362 363 5.692115 AAAAAGACAAATCTGGGGTTGTT 57.308 34.783 0.00 0.00 38.07 2.83
363 364 5.692115 AAAAGACAAATCTGGGGTTGTTT 57.308 34.783 0.00 0.00 38.07 2.83
364 365 6.800072 AAAAGACAAATCTGGGGTTGTTTA 57.200 33.333 0.00 0.00 38.07 2.01
365 366 6.800072 AAAGACAAATCTGGGGTTGTTTAA 57.200 33.333 0.00 0.00 38.07 1.52
366 367 5.784578 AGACAAATCTGGGGTTGTTTAAC 57.215 39.130 0.00 0.00 38.07 2.01
367 368 5.205056 AGACAAATCTGGGGTTGTTTAACA 58.795 37.500 0.00 0.00 38.07 2.41
368 369 5.068591 AGACAAATCTGGGGTTGTTTAACAC 59.931 40.000 0.00 0.00 38.07 3.32
369 370 4.712337 ACAAATCTGGGGTTGTTTAACACA 59.288 37.500 0.00 0.00 42.12 3.72
370 371 5.365314 ACAAATCTGGGGTTGTTTAACACAT 59.635 36.000 0.00 0.00 42.12 3.21
371 372 5.467035 AATCTGGGGTTGTTTAACACATG 57.533 39.130 0.00 0.00 42.12 3.21
372 373 4.171878 TCTGGGGTTGTTTAACACATGA 57.828 40.909 0.00 0.00 42.12 3.07
373 374 4.735369 TCTGGGGTTGTTTAACACATGAT 58.265 39.130 0.00 0.00 42.12 2.45
374 375 5.882040 TCTGGGGTTGTTTAACACATGATA 58.118 37.500 0.00 0.00 42.12 2.15
375 376 5.708230 TCTGGGGTTGTTTAACACATGATAC 59.292 40.000 0.00 0.00 42.12 2.24
376 377 5.636123 TGGGGTTGTTTAACACATGATACT 58.364 37.500 0.00 0.00 42.12 2.12
377 378 5.475220 TGGGGTTGTTTAACACATGATACTG 59.525 40.000 0.00 0.00 42.12 2.74
378 379 5.475564 GGGGTTGTTTAACACATGATACTGT 59.524 40.000 0.00 0.00 42.12 3.55
379 380 6.015772 GGGGTTGTTTAACACATGATACTGTT 60.016 38.462 0.00 1.80 42.12 3.16
380 381 7.081976 GGGTTGTTTAACACATGATACTGTTC 58.918 38.462 0.00 0.00 40.03 3.18
381 382 7.255312 GGGTTGTTTAACACATGATACTGTTCA 60.255 37.037 0.00 0.00 40.03 3.18
382 383 8.296713 GGTTGTTTAACACATGATACTGTTCAT 58.703 33.333 0.00 0.00 38.58 2.57
383 384 9.329913 GTTGTTTAACACATGATACTGTTCATC 57.670 33.333 0.00 0.00 34.23 2.92
384 385 8.039603 TGTTTAACACATGATACTGTTCATCC 57.960 34.615 0.00 0.00 34.09 3.51
385 386 7.882791 TGTTTAACACATGATACTGTTCATCCT 59.117 33.333 0.00 0.00 34.09 3.24
386 387 8.391106 GTTTAACACATGATACTGTTCATCCTC 58.609 37.037 0.00 0.00 34.09 3.71
387 388 5.028549 ACACATGATACTGTTCATCCTCC 57.971 43.478 0.00 0.00 34.09 4.30
388 389 4.141620 ACACATGATACTGTTCATCCTCCC 60.142 45.833 0.00 0.00 34.09 4.30
389 390 4.040047 ACATGATACTGTTCATCCTCCCA 58.960 43.478 0.00 0.00 34.09 4.37
390 391 4.102210 ACATGATACTGTTCATCCTCCCAG 59.898 45.833 0.00 0.00 34.09 4.45
391 392 3.994317 TGATACTGTTCATCCTCCCAGA 58.006 45.455 0.00 0.00 0.00 3.86
392 393 3.706594 TGATACTGTTCATCCTCCCAGAC 59.293 47.826 0.00 0.00 0.00 3.51
393 394 1.280457 ACTGTTCATCCTCCCAGACC 58.720 55.000 0.00 0.00 0.00 3.85
394 395 1.279496 CTGTTCATCCTCCCAGACCA 58.721 55.000 0.00 0.00 0.00 4.02
395 396 1.842562 CTGTTCATCCTCCCAGACCAT 59.157 52.381 0.00 0.00 0.00 3.55
396 397 1.561076 TGTTCATCCTCCCAGACCATG 59.439 52.381 0.00 0.00 0.00 3.66
397 398 1.839994 GTTCATCCTCCCAGACCATGA 59.160 52.381 0.00 0.00 0.00 3.07
398 399 2.239654 GTTCATCCTCCCAGACCATGAA 59.760 50.000 0.00 0.00 32.33 2.57
399 400 2.780414 TCATCCTCCCAGACCATGAAT 58.220 47.619 0.00 0.00 0.00 2.57
400 401 3.125656 TCATCCTCCCAGACCATGAATT 58.874 45.455 0.00 0.00 0.00 2.17
401 402 3.528905 TCATCCTCCCAGACCATGAATTT 59.471 43.478 0.00 0.00 0.00 1.82
402 403 3.370840 TCCTCCCAGACCATGAATTTG 57.629 47.619 0.00 0.00 0.00 2.32
403 404 2.649312 TCCTCCCAGACCATGAATTTGT 59.351 45.455 0.00 0.00 0.00 2.83
404 405 3.019564 CCTCCCAGACCATGAATTTGTC 58.980 50.000 0.00 0.00 0.00 3.18
405 406 3.308688 CCTCCCAGACCATGAATTTGTCT 60.309 47.826 0.00 0.00 39.86 3.41
406 407 4.338879 CTCCCAGACCATGAATTTGTCTT 58.661 43.478 0.00 0.00 37.25 3.01
407 408 4.739793 TCCCAGACCATGAATTTGTCTTT 58.260 39.130 0.00 0.00 37.25 2.52
408 409 5.147032 TCCCAGACCATGAATTTGTCTTTT 58.853 37.500 0.00 0.00 37.25 2.27
409 410 5.602145 TCCCAGACCATGAATTTGTCTTTTT 59.398 36.000 0.00 0.00 37.25 1.94
427 428 3.955771 TTTTTGTACAGGTCGCAACTC 57.044 42.857 0.00 0.00 0.00 3.01
428 429 2.605837 TTTGTACAGGTCGCAACTCA 57.394 45.000 0.00 0.00 0.00 3.41
429 430 2.605837 TTGTACAGGTCGCAACTCAA 57.394 45.000 0.00 0.00 0.00 3.02
430 431 2.148916 TGTACAGGTCGCAACTCAAG 57.851 50.000 0.00 0.00 0.00 3.02
431 432 1.270094 TGTACAGGTCGCAACTCAAGG 60.270 52.381 0.00 0.00 0.00 3.61
432 433 1.045407 TACAGGTCGCAACTCAAGGT 58.955 50.000 0.00 0.00 0.00 3.50
433 434 1.045407 ACAGGTCGCAACTCAAGGTA 58.955 50.000 0.00 0.00 0.00 3.08
434 435 1.623811 ACAGGTCGCAACTCAAGGTAT 59.376 47.619 0.00 0.00 0.00 2.73
435 436 2.038557 ACAGGTCGCAACTCAAGGTATT 59.961 45.455 0.00 0.00 0.00 1.89
436 437 3.074412 CAGGTCGCAACTCAAGGTATTT 58.926 45.455 0.00 0.00 0.00 1.40
437 438 3.125316 CAGGTCGCAACTCAAGGTATTTC 59.875 47.826 0.00 0.00 0.00 2.17
438 439 3.071479 GGTCGCAACTCAAGGTATTTCA 58.929 45.455 0.00 0.00 0.00 2.69
439 440 3.689649 GGTCGCAACTCAAGGTATTTCAT 59.310 43.478 0.00 0.00 0.00 2.57
440 441 4.201822 GGTCGCAACTCAAGGTATTTCATC 60.202 45.833 0.00 0.00 0.00 2.92
441 442 4.391830 GTCGCAACTCAAGGTATTTCATCA 59.608 41.667 0.00 0.00 0.00 3.07
442 443 5.065218 GTCGCAACTCAAGGTATTTCATCAT 59.935 40.000 0.00 0.00 0.00 2.45
443 444 5.065090 TCGCAACTCAAGGTATTTCATCATG 59.935 40.000 0.00 0.00 0.00 3.07
444 445 5.065090 CGCAACTCAAGGTATTTCATCATGA 59.935 40.000 0.00 0.00 0.00 3.07
445 446 6.403527 CGCAACTCAAGGTATTTCATCATGAA 60.404 38.462 0.00 0.00 34.03 2.57
446 447 7.486647 GCAACTCAAGGTATTTCATCATGAAT 58.513 34.615 0.00 0.00 36.11 2.57
447 448 7.977853 GCAACTCAAGGTATTTCATCATGAATT 59.022 33.333 0.00 0.16 36.11 2.17
448 449 9.865321 CAACTCAAGGTATTTCATCATGAATTT 57.135 29.630 0.00 0.00 36.11 1.82
460 461 9.761504 TTTCATCATGAATTTTTACACACATGT 57.238 25.926 0.00 0.00 38.32 3.21
461 462 9.194271 TTCATCATGAATTTTTACACACATGTG 57.806 29.630 24.25 24.25 40.52 3.21
483 484 6.761242 TGTGAGTTACATCCTTACATACATGC 59.239 38.462 0.00 0.00 33.42 4.06
484 485 6.986817 GTGAGTTACATCCTTACATACATGCT 59.013 38.462 0.00 0.00 0.00 3.79
485 486 7.495934 GTGAGTTACATCCTTACATACATGCTT 59.504 37.037 0.00 0.00 0.00 3.91
486 487 8.700973 TGAGTTACATCCTTACATACATGCTTA 58.299 33.333 0.00 0.00 0.00 3.09
487 488 9.712305 GAGTTACATCCTTACATACATGCTTAT 57.288 33.333 0.00 0.00 0.00 1.73
555 556 6.591750 TTTTTAAATAAAGGCGTCCATGGA 57.408 33.333 11.44 11.44 0.00 3.41
556 557 5.828299 TTTAAATAAAGGCGTCCATGGAG 57.172 39.130 16.81 10.69 0.00 3.86
557 558 1.680338 AATAAAGGCGTCCATGGAGC 58.320 50.000 16.81 19.71 0.00 4.70
558 559 0.839946 ATAAAGGCGTCCATGGAGCT 59.160 50.000 25.57 14.70 0.00 4.09
559 560 0.178068 TAAAGGCGTCCATGGAGCTC 59.822 55.000 25.57 18.71 0.00 4.09
560 561 2.859273 AAAGGCGTCCATGGAGCTCG 62.859 60.000 25.57 21.66 0.00 5.03
561 562 4.899239 GGCGTCCATGGAGCTCGG 62.899 72.222 25.57 3.50 0.00 4.63
563 564 4.899239 CGTCCATGGAGCTCGGCC 62.899 72.222 16.81 0.00 0.00 6.13
564 565 3.474570 GTCCATGGAGCTCGGCCT 61.475 66.667 16.81 0.00 0.00 5.19
565 566 3.157252 TCCATGGAGCTCGGCCTC 61.157 66.667 11.44 0.00 0.00 4.70
571 572 3.579685 GAGCTCGGCCTCCAAAAC 58.420 61.111 0.00 0.00 0.00 2.43
572 573 2.358737 AGCTCGGCCTCCAAAACG 60.359 61.111 0.00 0.00 0.00 3.60
573 574 4.103103 GCTCGGCCTCCAAAACGC 62.103 66.667 0.00 0.00 0.00 4.84
574 575 3.431725 CTCGGCCTCCAAAACGCC 61.432 66.667 0.00 0.00 39.41 5.68
575 576 3.901797 CTCGGCCTCCAAAACGCCT 62.902 63.158 0.00 0.00 40.70 5.52
576 577 3.431725 CGGCCTCCAAAACGCCTC 61.432 66.667 0.00 0.00 40.70 4.70
577 578 2.034221 GGCCTCCAAAACGCCTCT 59.966 61.111 0.00 0.00 39.70 3.69
578 579 2.041115 GGCCTCCAAAACGCCTCTC 61.041 63.158 0.00 0.00 39.70 3.20
579 580 1.003233 GCCTCCAAAACGCCTCTCT 60.003 57.895 0.00 0.00 0.00 3.10
580 581 1.021920 GCCTCCAAAACGCCTCTCTC 61.022 60.000 0.00 0.00 0.00 3.20
613 614 6.096282 CCCTTCCACTTTCTTTGTCTTGTTAA 59.904 38.462 0.00 0.00 0.00 2.01
655 656 6.540914 ACTTTTGAAGAAAATCTGGTACGACA 59.459 34.615 0.00 0.00 30.59 4.35
741 743 1.442769 CCAGAAGTTGGTCATCGGTG 58.557 55.000 0.00 0.00 42.41 4.94
885 888 2.096713 GCACAAGAACACAAGAGCTACG 60.097 50.000 0.00 0.00 0.00 3.51
887 890 3.802139 CACAAGAACACAAGAGCTACGAA 59.198 43.478 0.00 0.00 0.00 3.85
898 901 3.751246 CTACGAACACGCCCGGGA 61.751 66.667 29.31 0.00 0.00 5.14
925 928 4.154347 GGGAGCGAGCTGGGTCTG 62.154 72.222 24.26 0.00 34.90 3.51
945 953 2.103941 TGGTTTCAAATTGAAGGCCACC 59.896 45.455 21.51 19.08 37.88 4.61
1177 1210 2.728839 GCTCGATTGTCTATAGCTGCAC 59.271 50.000 1.02 0.00 0.00 4.57
1198 1231 4.768968 CACCTTCTTCATCCTTGATTGGTT 59.231 41.667 0.00 0.00 0.00 3.67
1199 1232 4.768968 ACCTTCTTCATCCTTGATTGGTTG 59.231 41.667 0.00 0.00 0.00 3.77
1399 1441 0.112412 ACAACGGGCCCAAGATCTTT 59.888 50.000 24.92 0.00 0.00 2.52
1565 1893 4.025401 CCTGTTTGGCGCGGTGAC 62.025 66.667 8.83 0.00 0.00 3.67
1659 1987 1.546923 ACCGTCACCAACATCATCGTA 59.453 47.619 0.00 0.00 0.00 3.43
1968 2296 1.389609 CCGCCGAGTACCACAGGTAT 61.390 60.000 0.00 0.00 40.54 2.73
2026 2354 3.332493 GAGAAGTACACCGCGCCGA 62.332 63.158 0.00 0.00 0.00 5.54
2208 2536 4.293648 CTCACGGGCCACACGTCA 62.294 66.667 4.39 0.00 43.58 4.35
2253 2581 2.839632 ATGGAGGCGCTCATCGGA 60.840 61.111 7.64 0.00 38.94 4.55
2427 2755 1.831736 ACCCTCAACTCCCAATAGACG 59.168 52.381 0.00 0.00 0.00 4.18
2506 2839 9.616156 ATCGACCGATCTAGAGTTGTAATATAT 57.384 33.333 0.00 0.00 0.00 0.86
2508 2841 9.491934 CGACCGATCTAGAGTTGTAATATATTG 57.508 37.037 8.28 0.00 0.00 1.90
2644 2982 4.336433 ACAATATCGGGCAATTTGTCTCAG 59.664 41.667 0.36 0.00 0.00 3.35
2645 2983 2.496899 ATCGGGCAATTTGTCTCAGT 57.503 45.000 0.36 0.00 0.00 3.41
2652 2990 5.333339 CGGGCAATTTGTCTCAGTATTATCG 60.333 44.000 0.36 0.00 0.00 2.92
2699 3103 4.878439 CGACTAATCGGTTGAATGGGATA 58.122 43.478 0.00 0.00 44.99 2.59
2705 3109 2.158957 TCGGTTGAATGGGATAGCTGAC 60.159 50.000 0.00 0.00 0.00 3.51
2763 3167 8.271458 TGCAAGGACAAAATATACTTGATAGGA 58.729 33.333 6.88 0.00 40.60 2.94
2987 3391 7.458409 AAATGATGACATGAGCAACTACTTT 57.542 32.000 0.00 0.00 36.79 2.66
3053 3457 0.680921 ACATTGTAGCGGGCATGCTT 60.681 50.000 18.92 3.79 44.46 3.91
3097 3501 7.915397 CACTAAAATGGTTGGACATATTAGTGC 59.085 37.037 8.78 0.00 0.00 4.40
3098 3502 7.834181 ACTAAAATGGTTGGACATATTAGTGCT 59.166 33.333 0.00 0.00 0.00 4.40
3144 3575 8.888419 AGATGATAACACCATTCTCTTATGGAT 58.112 33.333 9.49 0.00 46.63 3.41
3287 3718 5.128663 GGCAATTCCCAATTAGGTACATTGT 59.871 40.000 0.00 0.00 34.66 2.71
3321 3753 6.173339 CACTACCACAGACTTGGAAATGTAT 58.827 40.000 9.74 0.00 39.24 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.505742 CCAAAATGGATTTCCGGGGAAAAA 60.506 41.667 16.20 6.53 45.60 1.94
5 6 3.008485 CCAAAATGGATTTCCGGGGAAAA 59.992 43.478 16.20 1.56 45.60 2.29
6 7 2.569404 CCAAAATGGATTTCCGGGGAAA 59.431 45.455 14.76 14.76 46.37 3.13
8 9 1.359474 TCCAAAATGGATTTCCGGGGA 59.641 47.619 0.00 0.00 42.67 4.81
9 10 1.859302 TCCAAAATGGATTTCCGGGG 58.141 50.000 0.00 0.00 42.67 5.73
18 19 1.378514 GGCCGAGCTCCAAAATGGA 60.379 57.895 8.47 0.00 45.98 3.41
19 20 1.379044 AGGCCGAGCTCCAAAATGG 60.379 57.895 8.47 3.22 39.43 3.16
20 21 1.379642 GGAGGCCGAGCTCCAAAATG 61.380 60.000 8.47 0.00 39.45 2.32
21 22 1.077429 GGAGGCCGAGCTCCAAAAT 60.077 57.895 8.47 0.00 39.45 1.82
22 23 2.351276 GGAGGCCGAGCTCCAAAA 59.649 61.111 8.47 0.00 39.45 2.44
23 24 2.927856 TGGAGGCCGAGCTCCAAA 60.928 61.111 8.96 0.00 45.68 3.28
25 26 1.852157 AATTTGGAGGCCGAGCTCCA 61.852 55.000 8.47 7.35 46.84 3.86
26 27 1.077429 AATTTGGAGGCCGAGCTCC 60.077 57.895 8.47 0.00 40.05 4.70
27 28 0.392998 TGAATTTGGAGGCCGAGCTC 60.393 55.000 2.73 2.73 0.00 4.09
28 29 0.038166 TTGAATTTGGAGGCCGAGCT 59.962 50.000 0.00 0.00 0.00 4.09
29 30 0.887933 TTTGAATTTGGAGGCCGAGC 59.112 50.000 0.00 0.00 0.00 5.03
30 31 3.874392 AATTTGAATTTGGAGGCCGAG 57.126 42.857 0.00 0.00 0.00 4.63
31 32 5.730296 TTAAATTTGAATTTGGAGGCCGA 57.270 34.783 11.02 0.00 38.90 5.54
32 33 6.793492 TTTTAAATTTGAATTTGGAGGCCG 57.207 33.333 11.02 0.00 38.90 6.13
33 34 9.624697 GAAATTTTAAATTTGAATTTGGAGGCC 57.375 29.630 18.78 0.00 38.90 5.19
103 104 9.489084 GTGTTATGCCTTCATGTATATCTGTAA 57.511 33.333 0.00 0.00 34.22 2.41
104 105 8.646900 TGTGTTATGCCTTCATGTATATCTGTA 58.353 33.333 0.00 0.00 34.22 2.74
105 106 7.442364 GTGTGTTATGCCTTCATGTATATCTGT 59.558 37.037 0.00 0.00 34.22 3.41
106 107 7.442062 TGTGTGTTATGCCTTCATGTATATCTG 59.558 37.037 0.00 0.00 34.22 2.90
107 108 7.508687 TGTGTGTTATGCCTTCATGTATATCT 58.491 34.615 0.00 0.00 34.22 1.98
108 109 7.728847 TGTGTGTTATGCCTTCATGTATATC 57.271 36.000 0.00 0.00 34.22 1.63
109 110 7.720957 ACATGTGTGTTATGCCTTCATGTATAT 59.279 33.333 0.00 0.00 41.23 0.86
110 111 7.012232 CACATGTGTGTTATGCCTTCATGTATA 59.988 37.037 18.03 0.00 41.14 1.47
111 112 5.887598 ACATGTGTGTTATGCCTTCATGTAT 59.112 36.000 0.00 0.00 41.23 2.29
112 113 5.123661 CACATGTGTGTTATGCCTTCATGTA 59.876 40.000 18.03 0.00 41.14 2.29
113 114 4.081406 ACATGTGTGTTATGCCTTCATGT 58.919 39.130 0.00 0.00 39.25 3.21
114 115 4.417506 CACATGTGTGTTATGCCTTCATG 58.582 43.478 18.03 0.00 40.96 3.07
115 116 4.707030 CACATGTGTGTTATGCCTTCAT 57.293 40.909 18.03 0.00 40.96 2.57
130 131 6.640499 CACGATTGGAAATTTTACACACATGT 59.360 34.615 0.00 0.00 43.30 3.21
131 132 7.036669 CACGATTGGAAATTTTACACACATG 57.963 36.000 0.00 0.00 0.00 3.21
147 148 4.326826 ACAGGCATAATATCCACGATTGG 58.673 43.478 0.00 0.00 45.56 3.16
148 149 5.947228 AACAGGCATAATATCCACGATTG 57.053 39.130 0.00 0.00 0.00 2.67
149 150 7.769044 GGTATAACAGGCATAATATCCACGATT 59.231 37.037 0.00 0.00 0.00 3.34
150 151 7.125811 AGGTATAACAGGCATAATATCCACGAT 59.874 37.037 0.00 0.00 0.00 3.73
151 152 6.439375 AGGTATAACAGGCATAATATCCACGA 59.561 38.462 0.00 0.00 0.00 4.35
152 153 6.640518 AGGTATAACAGGCATAATATCCACG 58.359 40.000 0.00 0.00 0.00 4.94
153 154 7.852263 AGAGGTATAACAGGCATAATATCCAC 58.148 38.462 0.00 0.00 0.00 4.02
154 155 9.729550 ATAGAGGTATAACAGGCATAATATCCA 57.270 33.333 0.00 0.00 0.00 3.41
196 197 0.105408 AGCAGCTTGCCAAACAAAGG 59.895 50.000 0.00 0.00 46.52 3.11
197 198 1.214367 CAGCAGCTTGCCAAACAAAG 58.786 50.000 0.00 0.00 46.52 2.77
198 199 0.536260 ACAGCAGCTTGCCAAACAAA 59.464 45.000 0.00 0.00 46.52 2.83
199 200 1.397672 TACAGCAGCTTGCCAAACAA 58.602 45.000 0.00 0.00 46.52 2.83
200 201 1.337703 CTTACAGCAGCTTGCCAAACA 59.662 47.619 0.00 0.00 46.52 2.83
201 202 1.338020 ACTTACAGCAGCTTGCCAAAC 59.662 47.619 0.00 0.00 46.52 2.93
202 203 1.691196 ACTTACAGCAGCTTGCCAAA 58.309 45.000 0.00 0.00 46.52 3.28
203 204 1.691196 AACTTACAGCAGCTTGCCAA 58.309 45.000 0.00 0.00 46.52 4.52
204 205 1.691196 AAACTTACAGCAGCTTGCCA 58.309 45.000 0.00 0.00 46.52 4.92
205 206 2.666026 GAAAACTTACAGCAGCTTGCC 58.334 47.619 0.00 0.00 46.52 4.52
206 207 2.032030 TCGAAAACTTACAGCAGCTTGC 60.032 45.455 0.00 0.47 45.46 4.01
207 208 3.878086 TCGAAAACTTACAGCAGCTTG 57.122 42.857 0.00 0.00 0.00 4.01
208 209 4.065088 TCATCGAAAACTTACAGCAGCTT 58.935 39.130 0.00 0.00 0.00 3.74
209 210 3.664107 TCATCGAAAACTTACAGCAGCT 58.336 40.909 0.00 0.00 0.00 4.24
210 211 4.404507 TTCATCGAAAACTTACAGCAGC 57.595 40.909 0.00 0.00 0.00 5.25
211 212 6.835914 AGATTTCATCGAAAACTTACAGCAG 58.164 36.000 0.00 0.00 32.20 4.24
212 213 6.801539 AGATTTCATCGAAAACTTACAGCA 57.198 33.333 0.00 0.00 32.20 4.41
213 214 9.267096 CTAAAGATTTCATCGAAAACTTACAGC 57.733 33.333 11.01 0.00 41.43 4.40
219 220 9.930693 AGAGTACTAAAGATTTCATCGAAAACT 57.069 29.630 0.00 0.00 36.48 2.66
220 221 9.959775 CAGAGTACTAAAGATTTCATCGAAAAC 57.040 33.333 0.00 0.00 35.11 2.43
221 222 9.706691 ACAGAGTACTAAAGATTTCATCGAAAA 57.293 29.630 0.00 0.00 35.11 2.29
224 225 9.952188 CATACAGAGTACTAAAGATTTCATCGA 57.048 33.333 0.00 0.00 0.00 3.59
225 226 8.695284 GCATACAGAGTACTAAAGATTTCATCG 58.305 37.037 0.00 0.00 0.00 3.84
226 227 8.983724 GGCATACAGAGTACTAAAGATTTCATC 58.016 37.037 0.00 0.00 0.00 2.92
227 228 8.486210 TGGCATACAGAGTACTAAAGATTTCAT 58.514 33.333 0.00 0.00 0.00 2.57
228 229 7.847096 TGGCATACAGAGTACTAAAGATTTCA 58.153 34.615 0.00 0.00 0.00 2.69
229 230 8.718102 TTGGCATACAGAGTACTAAAGATTTC 57.282 34.615 0.00 0.00 0.00 2.17
230 231 9.686683 ATTTGGCATACAGAGTACTAAAGATTT 57.313 29.630 0.00 0.00 0.00 2.17
231 232 9.686683 AATTTGGCATACAGAGTACTAAAGATT 57.313 29.630 0.00 0.00 0.00 2.40
232 233 9.113838 CAATTTGGCATACAGAGTACTAAAGAT 57.886 33.333 0.00 0.00 0.00 2.40
233 234 8.318412 TCAATTTGGCATACAGAGTACTAAAGA 58.682 33.333 0.00 0.00 0.00 2.52
234 235 8.492673 TCAATTTGGCATACAGAGTACTAAAG 57.507 34.615 0.00 0.00 0.00 1.85
235 236 8.856153 TTCAATTTGGCATACAGAGTACTAAA 57.144 30.769 0.00 0.00 0.00 1.85
236 237 8.892723 CATTCAATTTGGCATACAGAGTACTAA 58.107 33.333 0.00 0.00 0.00 2.24
237 238 8.264347 TCATTCAATTTGGCATACAGAGTACTA 58.736 33.333 0.00 0.00 0.00 1.82
238 239 7.112122 TCATTCAATTTGGCATACAGAGTACT 58.888 34.615 0.00 0.00 0.00 2.73
239 240 7.320443 TCATTCAATTTGGCATACAGAGTAC 57.680 36.000 0.00 0.00 0.00 2.73
240 241 7.557358 ACATCATTCAATTTGGCATACAGAGTA 59.443 33.333 0.00 0.00 0.00 2.59
241 242 6.379133 ACATCATTCAATTTGGCATACAGAGT 59.621 34.615 0.00 0.00 0.00 3.24
242 243 6.695713 CACATCATTCAATTTGGCATACAGAG 59.304 38.462 0.00 0.00 0.00 3.35
243 244 6.153170 ACACATCATTCAATTTGGCATACAGA 59.847 34.615 0.00 0.00 0.00 3.41
244 245 6.334989 ACACATCATTCAATTTGGCATACAG 58.665 36.000 0.00 0.00 0.00 2.74
245 246 6.283544 ACACATCATTCAATTTGGCATACA 57.716 33.333 0.00 0.00 0.00 2.29
246 247 6.812656 TGAACACATCATTCAATTTGGCATAC 59.187 34.615 0.00 0.00 33.16 2.39
247 248 6.932947 TGAACACATCATTCAATTTGGCATA 58.067 32.000 0.00 0.00 33.16 3.14
248 249 5.795972 TGAACACATCATTCAATTTGGCAT 58.204 33.333 0.00 0.00 33.16 4.40
249 250 5.211174 TGAACACATCATTCAATTTGGCA 57.789 34.783 0.00 0.00 33.16 4.92
284 285 9.892130 ACTGAAATTTTACACACCCATTTTTAA 57.108 25.926 0.00 0.00 0.00 1.52
285 286 9.892130 AACTGAAATTTTACACACCCATTTTTA 57.108 25.926 0.00 0.00 0.00 1.52
286 287 8.800370 AACTGAAATTTTACACACCCATTTTT 57.200 26.923 0.00 0.00 0.00 1.94
287 288 8.043710 TGAACTGAAATTTTACACACCCATTTT 58.956 29.630 0.00 0.00 0.00 1.82
288 289 7.560368 TGAACTGAAATTTTACACACCCATTT 58.440 30.769 0.00 0.00 0.00 2.32
289 290 7.118496 TGAACTGAAATTTTACACACCCATT 57.882 32.000 0.00 0.00 0.00 3.16
290 291 6.723298 TGAACTGAAATTTTACACACCCAT 57.277 33.333 0.00 0.00 0.00 4.00
291 292 6.531503 TTGAACTGAAATTTTACACACCCA 57.468 33.333 0.00 0.00 0.00 4.51
292 293 7.835634 TTTTGAACTGAAATTTTACACACCC 57.164 32.000 0.00 0.00 0.00 4.61
306 307 7.807433 CCGTCATTTCAATGTATTTTGAACTGA 59.193 33.333 12.89 12.89 45.33 3.41
307 308 7.410728 GCCGTCATTTCAATGTATTTTGAACTG 60.411 37.037 9.63 9.63 43.38 3.16
308 309 6.586082 GCCGTCATTTCAATGTATTTTGAACT 59.414 34.615 0.00 0.00 43.38 3.01
309 310 6.586082 AGCCGTCATTTCAATGTATTTTGAAC 59.414 34.615 0.00 0.00 43.38 3.18
310 311 6.585702 CAGCCGTCATTTCAATGTATTTTGAA 59.414 34.615 0.00 0.00 42.33 2.69
311 312 6.092092 CAGCCGTCATTTCAATGTATTTTGA 58.908 36.000 0.00 0.00 37.65 2.69
312 313 5.220265 GCAGCCGTCATTTCAATGTATTTTG 60.220 40.000 0.00 0.00 37.65 2.44
313 314 4.864247 GCAGCCGTCATTTCAATGTATTTT 59.136 37.500 0.00 0.00 37.65 1.82
314 315 4.423732 GCAGCCGTCATTTCAATGTATTT 58.576 39.130 0.00 0.00 37.65 1.40
315 316 3.487376 CGCAGCCGTCATTTCAATGTATT 60.487 43.478 0.00 0.00 37.65 1.89
316 317 2.032054 CGCAGCCGTCATTTCAATGTAT 59.968 45.455 0.00 0.00 37.65 2.29
317 318 1.396648 CGCAGCCGTCATTTCAATGTA 59.603 47.619 0.00 0.00 37.65 2.29
318 319 0.168788 CGCAGCCGTCATTTCAATGT 59.831 50.000 0.00 0.00 37.65 2.71
319 320 2.934277 CGCAGCCGTCATTTCAATG 58.066 52.632 0.00 0.00 37.75 2.82
340 341 5.692115 AACAACCCCAGATTTGTCTTTTT 57.308 34.783 0.00 0.00 34.82 1.94
341 342 5.692115 AAACAACCCCAGATTTGTCTTTT 57.308 34.783 0.00 0.00 34.82 2.27
342 343 6.155393 TGTTAAACAACCCCAGATTTGTCTTT 59.845 34.615 0.00 0.00 34.82 2.52
343 344 5.659079 TGTTAAACAACCCCAGATTTGTCTT 59.341 36.000 0.00 0.00 34.82 3.01
344 345 5.068591 GTGTTAAACAACCCCAGATTTGTCT 59.931 40.000 0.00 0.00 34.82 3.41
345 346 5.163499 TGTGTTAAACAACCCCAGATTTGTC 60.163 40.000 0.00 0.00 34.82 3.18
346 347 4.712337 TGTGTTAAACAACCCCAGATTTGT 59.288 37.500 0.00 0.00 37.55 2.83
347 348 5.269505 TGTGTTAAACAACCCCAGATTTG 57.730 39.130 0.00 0.00 35.24 2.32
348 349 5.600484 TCATGTGTTAAACAACCCCAGATTT 59.400 36.000 0.00 0.00 43.61 2.17
349 350 5.144100 TCATGTGTTAAACAACCCCAGATT 58.856 37.500 0.00 0.00 43.61 2.40
350 351 4.735369 TCATGTGTTAAACAACCCCAGAT 58.265 39.130 0.00 0.00 43.61 2.90
351 352 4.171878 TCATGTGTTAAACAACCCCAGA 57.828 40.909 0.00 0.00 43.61 3.86
352 353 5.710099 AGTATCATGTGTTAAACAACCCCAG 59.290 40.000 0.00 0.00 43.61 4.45
353 354 5.475220 CAGTATCATGTGTTAAACAACCCCA 59.525 40.000 0.00 0.00 43.61 4.96
354 355 5.475564 ACAGTATCATGTGTTAAACAACCCC 59.524 40.000 0.00 0.00 43.61 4.95
355 356 6.569179 ACAGTATCATGTGTTAAACAACCC 57.431 37.500 0.00 0.00 43.61 4.11
356 357 7.644490 TGAACAGTATCATGTGTTAAACAACC 58.356 34.615 0.00 0.00 43.61 3.77
357 358 9.329913 GATGAACAGTATCATGTGTTAAACAAC 57.670 33.333 0.00 0.00 43.61 3.32
358 359 8.511321 GGATGAACAGTATCATGTGTTAAACAA 58.489 33.333 0.00 0.00 43.61 2.83
359 360 7.882791 AGGATGAACAGTATCATGTGTTAAACA 59.117 33.333 0.00 0.00 44.79 2.83
360 361 8.268850 AGGATGAACAGTATCATGTGTTAAAC 57.731 34.615 0.00 0.00 40.08 2.01
361 362 7.552687 GGAGGATGAACAGTATCATGTGTTAAA 59.447 37.037 0.00 0.00 40.08 1.52
362 363 7.047891 GGAGGATGAACAGTATCATGTGTTAA 58.952 38.462 0.00 0.00 40.08 2.01
363 364 6.408092 GGGAGGATGAACAGTATCATGTGTTA 60.408 42.308 0.00 0.00 40.08 2.41
364 365 5.431765 GGAGGATGAACAGTATCATGTGTT 58.568 41.667 0.00 0.00 40.08 3.32
365 366 4.141620 GGGAGGATGAACAGTATCATGTGT 60.142 45.833 0.00 0.00 40.08 3.72
366 367 4.141642 TGGGAGGATGAACAGTATCATGTG 60.142 45.833 0.00 0.00 40.08 3.21
367 368 4.040047 TGGGAGGATGAACAGTATCATGT 58.960 43.478 0.00 0.00 40.08 3.21
368 369 4.346127 TCTGGGAGGATGAACAGTATCATG 59.654 45.833 0.00 0.00 40.08 3.07
369 370 4.346418 GTCTGGGAGGATGAACAGTATCAT 59.654 45.833 0.00 0.00 42.62 2.45
370 371 3.706594 GTCTGGGAGGATGAACAGTATCA 59.293 47.826 0.00 0.00 32.92 2.15
371 372 3.070302 GGTCTGGGAGGATGAACAGTATC 59.930 52.174 0.00 0.00 32.92 2.24
372 373 3.041946 GGTCTGGGAGGATGAACAGTAT 58.958 50.000 0.00 0.00 32.92 2.12
373 374 2.225522 TGGTCTGGGAGGATGAACAGTA 60.226 50.000 0.00 0.00 32.92 2.74
374 375 1.280457 GGTCTGGGAGGATGAACAGT 58.720 55.000 0.00 0.00 32.92 3.55
375 376 1.279496 TGGTCTGGGAGGATGAACAG 58.721 55.000 0.00 0.00 0.00 3.16
376 377 1.561076 CATGGTCTGGGAGGATGAACA 59.439 52.381 0.00 0.00 0.00 3.18
377 378 1.839994 TCATGGTCTGGGAGGATGAAC 59.160 52.381 0.00 0.00 0.00 3.18
378 379 2.268796 TCATGGTCTGGGAGGATGAA 57.731 50.000 0.00 0.00 0.00 2.57
379 380 2.268796 TTCATGGTCTGGGAGGATGA 57.731 50.000 0.00 0.00 0.00 2.92
380 381 3.589951 AATTCATGGTCTGGGAGGATG 57.410 47.619 0.00 0.00 0.00 3.51
381 382 3.270433 ACAAATTCATGGTCTGGGAGGAT 59.730 43.478 0.00 0.00 0.00 3.24
382 383 2.649312 ACAAATTCATGGTCTGGGAGGA 59.351 45.455 0.00 0.00 0.00 3.71
383 384 3.019564 GACAAATTCATGGTCTGGGAGG 58.980 50.000 0.00 0.00 0.00 4.30
384 385 3.960571 AGACAAATTCATGGTCTGGGAG 58.039 45.455 1.32 0.00 40.21 4.30
385 386 4.387026 AAGACAAATTCATGGTCTGGGA 57.613 40.909 2.80 0.00 40.80 4.37
386 387 5.473066 AAAAGACAAATTCATGGTCTGGG 57.527 39.130 2.80 0.00 40.80 4.45
407 408 3.271729 TGAGTTGCGACCTGTACAAAAA 58.728 40.909 0.00 0.00 0.00 1.94
408 409 2.907634 TGAGTTGCGACCTGTACAAAA 58.092 42.857 0.00 0.00 0.00 2.44
409 410 2.605837 TGAGTTGCGACCTGTACAAA 57.394 45.000 0.00 0.00 0.00 2.83
410 411 2.479837 CTTGAGTTGCGACCTGTACAA 58.520 47.619 0.00 0.09 0.00 2.41
411 412 1.270094 CCTTGAGTTGCGACCTGTACA 60.270 52.381 0.00 0.00 0.00 2.90
412 413 1.270147 ACCTTGAGTTGCGACCTGTAC 60.270 52.381 0.00 0.00 0.00 2.90
413 414 1.045407 ACCTTGAGTTGCGACCTGTA 58.955 50.000 0.00 0.00 0.00 2.74
414 415 1.045407 TACCTTGAGTTGCGACCTGT 58.955 50.000 0.00 0.00 0.00 4.00
415 416 2.386661 ATACCTTGAGTTGCGACCTG 57.613 50.000 0.00 0.00 0.00 4.00
416 417 3.244422 TGAAATACCTTGAGTTGCGACCT 60.244 43.478 0.00 0.00 0.00 3.85
417 418 3.071479 TGAAATACCTTGAGTTGCGACC 58.929 45.455 0.00 0.00 0.00 4.79
418 419 4.391830 TGATGAAATACCTTGAGTTGCGAC 59.608 41.667 0.00 0.00 0.00 5.19
419 420 4.574892 TGATGAAATACCTTGAGTTGCGA 58.425 39.130 0.00 0.00 0.00 5.10
420 421 4.944962 TGATGAAATACCTTGAGTTGCG 57.055 40.909 0.00 0.00 0.00 4.85
421 422 6.441093 TCATGATGAAATACCTTGAGTTGC 57.559 37.500 0.00 0.00 0.00 4.17
422 423 9.865321 AAATTCATGATGAAATACCTTGAGTTG 57.135 29.630 12.36 0.00 40.12 3.16
434 435 9.761504 ACATGTGTGTAAAAATTCATGATGAAA 57.238 25.926 12.36 0.00 37.02 2.69
435 436 9.194271 CACATGTGTGTAAAAATTCATGATGAA 57.806 29.630 18.03 10.65 39.72 2.57
436 437 8.574737 TCACATGTGTGTAAAAATTCATGATGA 58.425 29.630 24.63 0.00 45.76 2.92
437 438 8.745464 TCACATGTGTGTAAAAATTCATGATG 57.255 30.769 24.63 0.00 45.76 3.07
438 439 8.579006 ACTCACATGTGTGTAAAAATTCATGAT 58.421 29.630 27.36 2.52 45.76 2.45
439 440 7.939782 ACTCACATGTGTGTAAAAATTCATGA 58.060 30.769 27.36 2.56 45.76 3.07
440 441 8.578308 AACTCACATGTGTGTAAAAATTCATG 57.422 30.769 28.35 0.00 45.76 3.07
441 442 9.677567 GTAACTCACATGTGTGTAAAAATTCAT 57.322 29.630 28.35 14.99 45.76 2.57
442 443 8.678199 TGTAACTCACATGTGTGTAAAAATTCA 58.322 29.630 28.35 16.00 45.76 2.57
443 444 9.677567 ATGTAACTCACATGTGTGTAAAAATTC 57.322 29.630 28.35 14.03 46.41 2.17
458 459 6.761242 GCATGTATGTAAGGATGTAACTCACA 59.239 38.462 0.00 0.00 42.69 3.58
459 460 6.986817 AGCATGTATGTAAGGATGTAACTCAC 59.013 38.462 0.00 0.00 0.00 3.51
460 461 7.124573 AGCATGTATGTAAGGATGTAACTCA 57.875 36.000 0.00 0.00 0.00 3.41
461 462 9.712305 ATAAGCATGTATGTAAGGATGTAACTC 57.288 33.333 0.00 0.00 0.00 3.01
532 533 6.591750 TCCATGGACGCCTTTATTTAAAAA 57.408 33.333 11.44 0.00 0.00 1.94
533 534 5.393678 GCTCCATGGACGCCTTTATTTAAAA 60.394 40.000 11.44 0.00 0.00 1.52
534 535 4.097286 GCTCCATGGACGCCTTTATTTAAA 59.903 41.667 11.44 0.00 0.00 1.52
535 536 3.630312 GCTCCATGGACGCCTTTATTTAA 59.370 43.478 11.44 0.00 0.00 1.52
536 537 3.118038 AGCTCCATGGACGCCTTTATTTA 60.118 43.478 24.08 0.00 0.00 1.40
537 538 2.024414 GCTCCATGGACGCCTTTATTT 58.976 47.619 11.44 0.00 0.00 1.40
538 539 1.212935 AGCTCCATGGACGCCTTTATT 59.787 47.619 24.08 9.06 0.00 1.40
539 540 0.839946 AGCTCCATGGACGCCTTTAT 59.160 50.000 24.08 9.61 0.00 1.40
540 541 0.178068 GAGCTCCATGGACGCCTTTA 59.822 55.000 24.08 0.00 0.00 1.85
541 542 1.078143 GAGCTCCATGGACGCCTTT 60.078 57.895 24.08 12.12 0.00 3.11
542 543 2.586792 GAGCTCCATGGACGCCTT 59.413 61.111 24.08 12.67 0.00 4.35
543 544 3.842923 CGAGCTCCATGGACGCCT 61.843 66.667 24.08 15.55 0.00 5.52
544 545 4.899239 CCGAGCTCCATGGACGCC 62.899 72.222 24.08 17.19 0.00 5.68
546 547 4.899239 GGCCGAGCTCCATGGACG 62.899 72.222 11.44 13.37 0.00 4.79
547 548 3.453070 GAGGCCGAGCTCCATGGAC 62.453 68.421 11.44 5.95 0.00 4.02
548 549 3.157252 GAGGCCGAGCTCCATGGA 61.157 66.667 15.27 15.27 0.00 3.41
549 550 4.247380 GGAGGCCGAGCTCCATGG 62.247 72.222 4.97 4.97 39.45 3.66
550 551 3.473647 TGGAGGCCGAGCTCCATG 61.474 66.667 8.47 0.00 44.02 3.66
552 553 2.525124 TTTTGGAGGCCGAGCTCCA 61.525 57.895 8.47 7.35 46.84 3.86
553 554 2.041115 GTTTTGGAGGCCGAGCTCC 61.041 63.158 8.47 0.00 40.05 4.70
554 555 2.391389 CGTTTTGGAGGCCGAGCTC 61.391 63.158 2.73 2.73 0.00 4.09
555 556 2.358737 CGTTTTGGAGGCCGAGCT 60.359 61.111 0.00 0.00 0.00 4.09
556 557 4.103103 GCGTTTTGGAGGCCGAGC 62.103 66.667 0.00 0.00 33.08 5.03
561 562 1.003233 AGAGAGGCGTTTTGGAGGC 60.003 57.895 0.00 0.00 38.40 4.70
562 563 0.610687 AGAGAGAGGCGTTTTGGAGG 59.389 55.000 0.00 0.00 0.00 4.30
563 564 2.464157 AAGAGAGAGGCGTTTTGGAG 57.536 50.000 0.00 0.00 0.00 3.86
564 565 2.368875 AGAAAGAGAGAGGCGTTTTGGA 59.631 45.455 0.00 0.00 0.00 3.53
565 566 2.772287 AGAAAGAGAGAGGCGTTTTGG 58.228 47.619 0.00 0.00 0.00 3.28
566 567 4.319839 GGAAAGAAAGAGAGAGGCGTTTTG 60.320 45.833 0.00 0.00 0.00 2.44
567 568 3.815962 GGAAAGAAAGAGAGAGGCGTTTT 59.184 43.478 0.00 0.00 0.00 2.43
568 569 3.403968 GGAAAGAAAGAGAGAGGCGTTT 58.596 45.455 0.00 0.00 0.00 3.60
569 570 2.289756 GGGAAAGAAAGAGAGAGGCGTT 60.290 50.000 0.00 0.00 0.00 4.84
570 571 1.276705 GGGAAAGAAAGAGAGAGGCGT 59.723 52.381 0.00 0.00 0.00 5.68
571 572 1.552792 AGGGAAAGAAAGAGAGAGGCG 59.447 52.381 0.00 0.00 0.00 5.52
572 573 3.605634 GAAGGGAAAGAAAGAGAGAGGC 58.394 50.000 0.00 0.00 0.00 4.70
573 574 3.584848 TGGAAGGGAAAGAAAGAGAGAGG 59.415 47.826 0.00 0.00 0.00 3.69
574 575 4.285775 AGTGGAAGGGAAAGAAAGAGAGAG 59.714 45.833 0.00 0.00 0.00 3.20
575 576 4.235372 AGTGGAAGGGAAAGAAAGAGAGA 58.765 43.478 0.00 0.00 0.00 3.10
576 577 4.632327 AGTGGAAGGGAAAGAAAGAGAG 57.368 45.455 0.00 0.00 0.00 3.20
577 578 5.132816 AGAAAGTGGAAGGGAAAGAAAGAGA 59.867 40.000 0.00 0.00 0.00 3.10
578 579 5.380900 AGAAAGTGGAAGGGAAAGAAAGAG 58.619 41.667 0.00 0.00 0.00 2.85
579 580 5.388599 AGAAAGTGGAAGGGAAAGAAAGA 57.611 39.130 0.00 0.00 0.00 2.52
580 581 6.127338 ACAAAGAAAGTGGAAGGGAAAGAAAG 60.127 38.462 0.00 0.00 0.00 2.62
613 614 8.877864 TTCAAAAGTTACACATTCCATCCTAT 57.122 30.769 0.00 0.00 0.00 2.57
741 743 1.766069 GTTTGTCACGTTTGATGGGC 58.234 50.000 0.00 0.00 33.11 5.36
885 888 0.958876 AAGATTTCCCGGGCGTGTTC 60.959 55.000 18.49 8.12 0.00 3.18
887 890 1.674322 CAAGATTTCCCGGGCGTGT 60.674 57.895 18.49 0.46 0.00 4.49
898 901 0.741221 GCTCGCTCCCGTCAAGATTT 60.741 55.000 0.00 0.00 35.54 2.17
925 928 2.766313 GGTGGCCTTCAATTTGAAACC 58.234 47.619 17.86 17.86 35.73 3.27
1177 1210 4.768968 ACAACCAATCAAGGATGAAGAAGG 59.231 41.667 0.00 0.00 39.49 3.46
1198 1231 3.123790 CACAGTACACGTCACAAACAACA 59.876 43.478 0.00 0.00 0.00 3.33
1199 1232 3.123959 ACACAGTACACGTCACAAACAAC 59.876 43.478 0.00 0.00 0.00 3.32
1399 1441 1.089920 GTACGTACCTCTTCTGCGGA 58.910 55.000 15.00 0.00 0.00 5.54
1565 1893 4.807039 CGTCGTACTTGGGGCCCG 62.807 72.222 19.83 7.05 0.00 6.13
1569 1897 0.890683 ACTTACCGTCGTACTTGGGG 59.109 55.000 0.00 0.00 0.00 4.96
1659 1987 0.313043 ACTTGATGTCGAACGTCGGT 59.687 50.000 0.00 0.00 40.88 4.69
1968 2296 1.342496 GTGCCGATGGAGATGATGAGA 59.658 52.381 0.00 0.00 0.00 3.27
2427 2755 4.099824 GTTCTCTTTCGAATCGTCCTCTC 58.900 47.826 1.52 0.00 0.00 3.20
2652 2990 6.089016 GCCAACTTCGTAAAAATCTTAAAGCC 59.911 38.462 0.00 0.00 0.00 4.35
2705 3109 2.113807 TGAGTGAGATGGACCTCATGG 58.886 52.381 0.00 0.00 44.09 3.66
2763 3167 9.920946 ATTTATAGTTTCATGTAGGACACCAAT 57.079 29.630 0.00 0.00 0.00 3.16
2809 3213 8.031277 AGTTGATTTTTAAGATGACATTGCTCC 58.969 33.333 0.00 0.00 0.00 4.70
2856 3260 8.567948 GTTTATGGAAGAAATGAGTCACTTGAA 58.432 33.333 0.00 0.00 0.00 2.69
3144 3575 4.623932 AGCAACTTGAGGTTAGTCATGA 57.376 40.909 0.00 0.00 36.23 3.07
3267 3698 7.410174 TGAGAACAATGTACCTAATTGGGAAT 58.590 34.615 15.76 2.45 38.98 3.01
3287 3718 4.593206 AGTCTGTGGTAGTGGATTTGAGAA 59.407 41.667 0.00 0.00 0.00 2.87
3321 3753 4.511454 CGTTTCTCAAGTCAATCTTCCACA 59.489 41.667 0.00 0.00 33.63 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.