Multiple sequence alignment - TraesCS7D01G178100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G178100 chr7D 100.000 2710 0 0 1 2710 131459071 131461780 0.000000e+00 5005.0
1 TraesCS7D01G178100 chr7B 89.850 2207 110 47 1 2144 92310121 92312276 0.000000e+00 2730.0
2 TraesCS7D01G178100 chr7B 83.939 330 33 12 2224 2541 92312261 92312582 5.670000e-77 298.0
3 TraesCS7D01G178100 chr7B 82.609 207 11 9 2527 2710 92312725 92312929 2.790000e-35 159.0
4 TraesCS7D01G178100 chr7A 88.646 2193 129 48 2 2124 130221818 130223960 0.000000e+00 2560.0
5 TraesCS7D01G178100 chr7A 85.714 266 24 6 2346 2601 130224278 130224539 4.450000e-68 268.0
6 TraesCS7D01G178100 chr1A 88.945 597 49 7 1112 1702 7330359 7330944 0.000000e+00 721.0
7 TraesCS7D01G178100 chr4B 87.934 547 41 9 1112 1654 19407097 19407622 2.960000e-174 621.0
8 TraesCS7D01G178100 chr1D 92.157 51 4 0 2140 2190 489446074 489446024 3.740000e-09 73.1
9 TraesCS7D01G178100 chr1D 88.000 50 5 1 2142 2190 489303992 489303943 1.050000e-04 58.4
10 TraesCS7D01G178100 chr1D 88.000 50 5 1 2142 2190 489329380 489329331 1.050000e-04 58.4
11 TraesCS7D01G178100 chr1D 100.000 29 0 0 2162 2190 489445199 489445171 1.000000e-03 54.7
12 TraesCS7D01G178100 chr5D 97.561 41 0 1 2452 2491 34236436 34236476 4.840000e-08 69.4
13 TraesCS7D01G178100 chr5D 100.000 28 0 0 2493 2520 353648725 353648752 5.000000e-03 52.8
14 TraesCS7D01G178100 chrUn 88.000 50 5 1 2142 2190 346648797 346648846 1.050000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G178100 chr7D 131459071 131461780 2709 False 5005.000000 5005 100.000 1 2710 1 chr7D.!!$F1 2709
1 TraesCS7D01G178100 chr7B 92310121 92312929 2808 False 1062.333333 2730 85.466 1 2710 3 chr7B.!!$F1 2709
2 TraesCS7D01G178100 chr7A 130221818 130224539 2721 False 1414.000000 2560 87.180 2 2601 2 chr7A.!!$F1 2599
3 TraesCS7D01G178100 chr1A 7330359 7330944 585 False 721.000000 721 88.945 1112 1702 1 chr1A.!!$F1 590
4 TraesCS7D01G178100 chr4B 19407097 19407622 525 False 621.000000 621 87.934 1112 1654 1 chr4B.!!$F1 542

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
425 455 0.026544 TTTGTTGGCGTCGTTCGTTC 59.973 50.0 0.0 0.21 42.13 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1834 1927 0.107945 TGCCAACCACAACAAAAGCC 60.108 50.0 0.0 0.0 0.0 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.162800 GCAGAAGGCTTATCCGCAGG 61.163 60.000 0.00 0.00 46.11 4.85
45 49 1.899054 TTTCCGGCCGCATTTCACA 60.899 52.632 22.85 0.00 0.00 3.58
53 57 2.502510 GCATTTCACAGTGCCGCG 60.503 61.111 0.00 0.00 35.35 6.46
54 58 2.502510 CATTTCACAGTGCCGCGC 60.503 61.111 0.00 0.00 0.00 6.86
55 59 4.088762 ATTTCACAGTGCCGCGCG 62.089 61.111 25.67 25.67 0.00 6.86
75 83 2.350293 CGCCTCGATATCTCTGTCAGTG 60.350 54.545 0.34 0.00 0.00 3.66
85 93 7.066887 CGATATCTCTGTCAGTGGCTATAAGAT 59.933 40.741 0.34 2.11 0.00 2.40
163 171 1.757699 ACTACTGCTAGTTAGGCCTGC 59.242 52.381 17.99 10.72 27.62 4.85
283 301 2.550978 CACCGCCATTACTCTACCTTG 58.449 52.381 0.00 0.00 0.00 3.61
308 326 3.428045 GCTGATCTAACACCACAATTGCC 60.428 47.826 5.05 0.00 0.00 4.52
323 341 0.037326 TTGCCCTGTACGAAGAGCTG 60.037 55.000 0.00 0.00 0.00 4.24
324 342 1.153549 GCCCTGTACGAAGAGCTGG 60.154 63.158 0.00 0.00 0.00 4.85
325 343 1.153549 CCCTGTACGAAGAGCTGGC 60.154 63.158 0.00 0.00 0.00 4.85
326 344 1.153549 CCTGTACGAAGAGCTGGCC 60.154 63.158 0.00 0.00 0.00 5.36
398 428 7.910441 AAAAGATGGCAAATAATTTCTGGTG 57.090 32.000 0.00 0.00 0.00 4.17
422 452 1.446465 CAATTTTGTTGGCGTCGTTCG 59.554 47.619 0.00 0.00 43.12 3.95
423 453 0.658897 ATTTTGTTGGCGTCGTTCGT 59.341 45.000 0.00 0.00 42.13 3.85
424 454 0.447011 TTTTGTTGGCGTCGTTCGTT 59.553 45.000 0.00 0.00 42.13 3.85
425 455 0.026544 TTTGTTGGCGTCGTTCGTTC 59.973 50.000 0.00 0.21 42.13 3.95
477 507 3.169733 GTCGTACGTGAGAAAGATGTCC 58.830 50.000 16.05 0.00 0.00 4.02
483 513 2.266554 GTGAGAAAGATGTCCGAGCTG 58.733 52.381 0.00 0.00 0.00 4.24
484 514 2.094494 GTGAGAAAGATGTCCGAGCTGA 60.094 50.000 0.00 0.00 0.00 4.26
485 515 2.562738 TGAGAAAGATGTCCGAGCTGAA 59.437 45.455 0.00 0.00 0.00 3.02
486 516 3.006859 TGAGAAAGATGTCCGAGCTGAAA 59.993 43.478 0.00 0.00 0.00 2.69
487 517 3.997021 GAGAAAGATGTCCGAGCTGAAAA 59.003 43.478 0.00 0.00 0.00 2.29
488 518 3.999663 AGAAAGATGTCCGAGCTGAAAAG 59.000 43.478 0.00 0.00 0.00 2.27
489 519 2.393271 AGATGTCCGAGCTGAAAAGG 57.607 50.000 0.00 0.00 0.00 3.11
490 520 0.729690 GATGTCCGAGCTGAAAAGGC 59.270 55.000 0.00 0.00 0.00 4.35
491 521 0.326264 ATGTCCGAGCTGAAAAGGCT 59.674 50.000 0.00 0.00 43.26 4.58
492 522 0.973632 TGTCCGAGCTGAAAAGGCTA 59.026 50.000 0.00 0.00 40.40 3.93
493 523 1.066858 TGTCCGAGCTGAAAAGGCTAG 60.067 52.381 0.00 0.00 40.40 3.42
494 524 0.108138 TCCGAGCTGAAAAGGCTAGC 60.108 55.000 6.04 6.04 40.40 3.42
495 525 1.092345 CCGAGCTGAAAAGGCTAGCC 61.092 60.000 27.19 27.19 40.40 3.93
496 526 0.391661 CGAGCTGAAAAGGCTAGCCA 60.392 55.000 34.70 13.56 40.40 4.75
497 527 1.826385 GAGCTGAAAAGGCTAGCCAA 58.174 50.000 34.70 13.81 40.40 4.52
498 528 1.470494 GAGCTGAAAAGGCTAGCCAAC 59.530 52.381 34.70 21.27 40.40 3.77
499 529 0.169009 GCTGAAAAGGCTAGCCAACG 59.831 55.000 34.70 16.93 38.92 4.10
500 530 0.804989 CTGAAAAGGCTAGCCAACGG 59.195 55.000 34.70 21.50 38.92 4.44
501 531 0.398696 TGAAAAGGCTAGCCAACGGA 59.601 50.000 34.70 13.28 38.92 4.69
502 532 1.087501 GAAAAGGCTAGCCAACGGAG 58.912 55.000 34.70 0.00 38.92 4.63
503 533 0.690762 AAAAGGCTAGCCAACGGAGA 59.309 50.000 34.70 0.00 38.92 3.71
504 534 0.250513 AAAGGCTAGCCAACGGAGAG 59.749 55.000 34.70 0.00 38.92 3.20
505 535 0.614979 AAGGCTAGCCAACGGAGAGA 60.615 55.000 34.70 0.00 38.92 3.10
506 536 0.614979 AGGCTAGCCAACGGAGAGAA 60.615 55.000 34.70 0.00 38.92 2.87
521 564 5.415389 ACGGAGAGAAGAAAGTAACTACTCC 59.585 44.000 0.00 0.00 38.27 3.85
585 629 2.538037 ACGAAAAACATGCGCCTTTTTC 59.462 40.909 24.18 24.18 40.59 2.29
604 652 0.824759 CCCCTTTCGATCGAGAAGGT 59.175 55.000 32.96 0.00 0.00 3.50
605 653 2.029623 CCCCTTTCGATCGAGAAGGTA 58.970 52.381 32.96 15.94 0.00 3.08
606 654 2.034812 CCCCTTTCGATCGAGAAGGTAG 59.965 54.545 32.96 26.24 0.00 3.18
907 959 1.845809 GCCATCGGTCGATCCATTGC 61.846 60.000 2.59 0.00 35.57 3.56
948 1006 2.434336 TGACTGTTTGACACTGGTAGCT 59.566 45.455 0.00 0.00 0.00 3.32
950 1008 4.238514 GACTGTTTGACACTGGTAGCTAG 58.761 47.826 0.00 0.00 0.00 3.42
961 1019 0.030101 GGTAGCTAGCTGCACTCTCG 59.970 60.000 30.27 0.00 45.94 4.04
971 1029 1.153997 GCACTCTCGTCTCCGGTTC 60.154 63.158 0.00 0.00 33.95 3.62
983 1041 1.820481 CCGGTTCGGTTGGTTGTGT 60.820 57.895 0.00 0.00 42.73 3.72
984 1042 1.378124 CCGGTTCGGTTGGTTGTGTT 61.378 55.000 0.00 0.00 42.73 3.32
985 1043 0.248296 CGGTTCGGTTGGTTGTGTTG 60.248 55.000 0.00 0.00 0.00 3.33
986 1044 1.096416 GGTTCGGTTGGTTGTGTTGA 58.904 50.000 0.00 0.00 0.00 3.18
987 1045 1.064952 GGTTCGGTTGGTTGTGTTGAG 59.935 52.381 0.00 0.00 0.00 3.02
989 1047 0.107410 TCGGTTGGTTGTGTTGAGCT 60.107 50.000 0.00 0.00 0.00 4.09
1004 1064 0.251354 GAGCTTGCTGGTGAGATGGA 59.749 55.000 0.00 0.00 0.00 3.41
1176 1236 1.870055 GCGACACCCTCGGTCAGTAA 61.870 60.000 0.00 0.00 43.18 2.24
1177 1237 0.109412 CGACACCCTCGGTCAGTAAC 60.109 60.000 0.00 0.00 38.87 2.50
1185 1252 2.345991 GGTCAGTAACTGCCGGCA 59.654 61.111 30.59 30.59 0.00 5.69
1212 1282 6.813152 GCCACGTACCTTTCTAGTAACATTTA 59.187 38.462 0.00 0.00 0.00 1.40
1221 1291 7.275123 CCTTTCTAGTAACATTTACGTCTGGTC 59.725 40.741 0.00 0.00 0.00 4.02
1269 1340 3.402233 GCGCGCGGCAATTTTTGT 61.402 55.556 33.06 0.00 42.87 2.83
1272 1343 0.778815 CGCGCGGCAATTTTTGTTTA 59.221 45.000 24.84 0.00 0.00 2.01
1273 1344 1.388431 CGCGCGGCAATTTTTGTTTAT 59.612 42.857 24.84 0.00 0.00 1.40
1277 1349 4.627098 CGCGGCAATTTTTGTTTATCTTG 58.373 39.130 0.00 0.00 0.00 3.02
1550 1625 4.016706 GACACCCCCTCCACCACG 62.017 72.222 0.00 0.00 0.00 4.94
1720 1798 0.464013 CTCTTCTAGACGGGCGAGGA 60.464 60.000 0.00 0.00 0.00 3.71
1812 1905 0.804989 CGTTTGTTGAGGAGGCCATC 59.195 55.000 5.01 0.00 0.00 3.51
1827 1920 2.556622 GGCCATCTTTCTTTTGACGGAA 59.443 45.455 0.00 0.00 0.00 4.30
1834 1927 2.543777 TCTTTTGACGGAAGGGACTG 57.456 50.000 0.00 0.00 40.86 3.51
1853 1946 0.107945 GGCTTTTGTTGTGGTTGGCA 60.108 50.000 0.00 0.00 0.00 4.92
1854 1947 1.006086 GCTTTTGTTGTGGTTGGCAC 58.994 50.000 0.00 0.00 0.00 5.01
1868 1961 1.003112 GGCACACGGTGGTTGGATA 60.003 57.895 13.48 0.00 33.64 2.59
1885 1979 6.935208 GGTTGGATACCTGGATTCTATGTTAC 59.065 42.308 0.00 0.00 44.10 2.50
1941 2038 7.871973 TCGTGTATTTTTGCCTACTTTGTACTA 59.128 33.333 0.00 0.00 0.00 1.82
1992 2099 6.503616 TTTGCACGTGTGATTTATTTTCAC 57.496 33.333 18.38 0.00 43.04 3.18
2019 2126 5.833406 TTCATTCATGTGGCGTATGAAAT 57.167 34.783 16.67 6.52 44.83 2.17
2084 2200 0.863144 ATGAACAACCGGTTTCGTCG 59.137 50.000 19.55 8.74 40.63 5.12
2119 2235 4.832608 GGCTACCAAGACGCCCCG 62.833 72.222 0.00 0.00 37.86 5.73
2145 2292 2.022764 GCAAACTGCAAAAACCCTGT 57.977 45.000 0.00 0.00 44.26 4.00
2146 2293 2.355197 GCAAACTGCAAAAACCCTGTT 58.645 42.857 0.00 0.00 44.26 3.16
2147 2294 2.746904 GCAAACTGCAAAAACCCTGTTT 59.253 40.909 0.00 0.00 44.26 2.83
2148 2295 3.426025 GCAAACTGCAAAAACCCTGTTTG 60.426 43.478 15.64 15.64 45.55 2.93
2149 2296 3.694043 AACTGCAAAAACCCTGTTTGT 57.306 38.095 0.00 0.00 38.09 2.83
2150 2297 2.971307 ACTGCAAAAACCCTGTTTGTG 58.029 42.857 5.67 5.67 38.09 3.33
2151 2298 1.665169 CTGCAAAAACCCTGTTTGTGC 59.335 47.619 22.04 22.04 38.09 4.57
2152 2299 1.002430 TGCAAAAACCCTGTTTGTGCA 59.998 42.857 25.74 25.74 38.09 4.57
2153 2300 1.396648 GCAAAAACCCTGTTTGTGCAC 59.603 47.619 23.26 10.75 38.09 4.57
2154 2301 2.006169 CAAAAACCCTGTTTGTGCACC 58.994 47.619 15.69 0.00 32.43 5.01
2155 2302 0.174617 AAAACCCTGTTTGTGCACCG 59.825 50.000 15.69 0.00 0.00 4.94
2156 2303 0.968393 AAACCCTGTTTGTGCACCGT 60.968 50.000 15.69 0.00 0.00 4.83
2157 2304 0.968393 AACCCTGTTTGTGCACCGTT 60.968 50.000 15.69 2.47 0.00 4.44
2158 2305 0.968393 ACCCTGTTTGTGCACCGTTT 60.968 50.000 15.69 0.00 0.00 3.60
2159 2306 0.174617 CCCTGTTTGTGCACCGTTTT 59.825 50.000 15.69 0.00 0.00 2.43
2160 2307 1.405821 CCCTGTTTGTGCACCGTTTTA 59.594 47.619 15.69 0.00 0.00 1.52
2161 2308 2.542824 CCCTGTTTGTGCACCGTTTTAG 60.543 50.000 15.69 5.26 0.00 1.85
2162 2309 2.542824 CCTGTTTGTGCACCGTTTTAGG 60.543 50.000 15.69 10.57 37.30 2.69
2163 2310 1.405821 TGTTTGTGCACCGTTTTAGGG 59.594 47.619 15.69 0.00 35.02 3.53
2164 2311 1.677052 GTTTGTGCACCGTTTTAGGGA 59.323 47.619 15.69 0.00 35.02 4.20
2165 2312 1.600023 TTGTGCACCGTTTTAGGGAG 58.400 50.000 15.69 0.00 35.02 4.30
2166 2313 0.250553 TGTGCACCGTTTTAGGGAGG 60.251 55.000 15.69 0.00 35.02 4.30
2167 2314 1.302993 TGCACCGTTTTAGGGAGGC 60.303 57.895 0.00 0.00 35.02 4.70
2168 2315 1.002502 GCACCGTTTTAGGGAGGCT 60.003 57.895 0.00 0.00 35.02 4.58
2169 2316 0.251073 GCACCGTTTTAGGGAGGCTA 59.749 55.000 0.00 0.00 35.02 3.93
2170 2317 1.339342 GCACCGTTTTAGGGAGGCTAA 60.339 52.381 0.00 0.00 35.02 3.09
2171 2318 2.682858 GCACCGTTTTAGGGAGGCTAAT 60.683 50.000 0.00 0.00 35.02 1.73
2172 2319 3.617284 CACCGTTTTAGGGAGGCTAATT 58.383 45.455 0.00 0.00 35.02 1.40
2173 2320 3.626217 CACCGTTTTAGGGAGGCTAATTC 59.374 47.826 0.00 0.00 35.02 2.17
2174 2321 3.522343 ACCGTTTTAGGGAGGCTAATTCT 59.478 43.478 0.00 0.00 35.02 2.40
2175 2322 3.877508 CCGTTTTAGGGAGGCTAATTCTG 59.122 47.826 0.00 0.00 0.00 3.02
2176 2323 4.514401 CGTTTTAGGGAGGCTAATTCTGT 58.486 43.478 0.00 0.00 0.00 3.41
2177 2324 4.941873 CGTTTTAGGGAGGCTAATTCTGTT 59.058 41.667 0.00 0.00 0.00 3.16
2178 2325 5.163754 CGTTTTAGGGAGGCTAATTCTGTTG 60.164 44.000 0.00 0.00 0.00 3.33
2179 2326 2.426842 AGGGAGGCTAATTCTGTTGC 57.573 50.000 0.00 0.00 0.00 4.17
2180 2327 1.918957 AGGGAGGCTAATTCTGTTGCT 59.081 47.619 0.00 0.00 0.00 3.91
2181 2328 2.092699 AGGGAGGCTAATTCTGTTGCTC 60.093 50.000 0.00 0.00 0.00 4.26
2182 2329 2.356125 GGGAGGCTAATTCTGTTGCTCA 60.356 50.000 0.00 0.00 0.00 4.26
2183 2330 3.549794 GGAGGCTAATTCTGTTGCTCAT 58.450 45.455 0.00 0.00 0.00 2.90
2184 2331 3.314635 GGAGGCTAATTCTGTTGCTCATG 59.685 47.826 0.00 0.00 0.00 3.07
2185 2332 4.194640 GAGGCTAATTCTGTTGCTCATGA 58.805 43.478 0.00 0.00 0.00 3.07
2186 2333 4.592942 AGGCTAATTCTGTTGCTCATGAA 58.407 39.130 0.00 0.00 0.00 2.57
2187 2334 5.198965 AGGCTAATTCTGTTGCTCATGAAT 58.801 37.500 0.00 0.00 0.00 2.57
2188 2335 5.655532 AGGCTAATTCTGTTGCTCATGAATT 59.344 36.000 0.00 0.00 37.50 2.17
2189 2336 6.830324 AGGCTAATTCTGTTGCTCATGAATTA 59.170 34.615 0.00 0.00 36.42 1.40
2190 2337 7.340232 AGGCTAATTCTGTTGCTCATGAATTAA 59.660 33.333 0.00 0.00 36.69 1.40
2191 2338 7.975616 GGCTAATTCTGTTGCTCATGAATTAAA 59.024 33.333 0.00 0.00 36.69 1.52
2192 2339 9.525409 GCTAATTCTGTTGCTCATGAATTAAAT 57.475 29.630 0.00 0.00 36.69 1.40
2201 2348 9.727627 GTTGCTCATGAATTAAATAAAGAGAGG 57.272 33.333 0.00 0.00 0.00 3.69
2202 2349 9.685276 TTGCTCATGAATTAAATAAAGAGAGGA 57.315 29.630 0.00 0.00 0.00 3.71
2203 2350 9.685276 TGCTCATGAATTAAATAAAGAGAGGAA 57.315 29.630 0.00 0.00 0.00 3.36
2221 2368 9.745018 AGAGAGGAATATGATTTCTCAAAAACA 57.255 29.630 9.61 0.00 37.37 2.83
2230 2377 7.664082 TGATTTCTCAAAAACAAAAACTGCA 57.336 28.000 0.00 0.00 0.00 4.41
2231 2378 8.092521 TGATTTCTCAAAAACAAAAACTGCAA 57.907 26.923 0.00 0.00 0.00 4.08
2232 2379 8.562892 TGATTTCTCAAAAACAAAAACTGCAAA 58.437 25.926 0.00 0.00 0.00 3.68
2233 2380 9.392021 GATTTCTCAAAAACAAAAACTGCAAAA 57.608 25.926 0.00 0.00 0.00 2.44
2234 2381 8.553817 TTTCTCAAAAACAAAAACTGCAAAAC 57.446 26.923 0.00 0.00 0.00 2.43
2235 2382 6.663565 TCTCAAAAACAAAAACTGCAAAACC 58.336 32.000 0.00 0.00 0.00 3.27
2236 2383 5.763088 TCAAAAACAAAAACTGCAAAACCC 58.237 33.333 0.00 0.00 0.00 4.11
2241 2388 3.783478 AAACTGCAAAACCCCGCGC 62.783 57.895 0.00 0.00 0.00 6.86
2259 2406 2.760374 CGCTAGGCTCCTTCCAAATAG 58.240 52.381 0.00 0.00 0.00 1.73
2342 2489 7.307493 TCCAAATCAAATTCGATCTACACAG 57.693 36.000 0.00 0.00 0.00 3.66
2358 2670 5.991606 TCTACACAGAAGACAAATCCAACTG 59.008 40.000 0.00 0.00 0.00 3.16
2367 2679 4.214119 AGACAAATCCAACTGTGAATGTCG 59.786 41.667 0.00 0.00 37.54 4.35
2368 2680 3.253188 ACAAATCCAACTGTGAATGTCGG 59.747 43.478 0.00 0.00 0.00 4.79
2374 2687 4.041723 CCAACTGTGAATGTCGGTTTTTC 58.958 43.478 0.00 0.00 32.89 2.29
2376 2689 2.621526 ACTGTGAATGTCGGTTTTTCCC 59.378 45.455 0.00 0.00 0.00 3.97
2379 2692 1.146152 TGAATGTCGGTTTTTCCCCCT 59.854 47.619 0.00 0.00 0.00 4.79
2401 2714 2.568623 AAAGAGACTGAAACCGCCAT 57.431 45.000 0.00 0.00 0.00 4.40
2446 2762 7.218614 CACAACCATTATTATTGATTGCCCAT 58.781 34.615 0.00 0.00 0.00 4.00
2485 2801 6.869913 TGAAATTAACACCTACCACTAAGTCG 59.130 38.462 0.00 0.00 0.00 4.18
2500 2823 5.124138 CACTAAGTCGACTTCCAGACACTAT 59.876 44.000 32.86 8.61 39.67 2.12
2521 2844 9.282247 CACTATTCACATCTAAATTTGTCTTGC 57.718 33.333 0.00 0.00 0.00 4.01
2534 3014 0.807496 GTCTTGCTGGTTCTCCATGC 59.193 55.000 0.00 0.00 43.43 4.06
2535 3015 0.674581 TCTTGCTGGTTCTCCATGCG 60.675 55.000 0.00 0.00 43.43 4.73
2581 3062 8.879759 AGTTTATAGAATCATAAACACACACCG 58.120 33.333 19.92 0.00 46.70 4.94
2588 3069 5.142061 TCATAAACACACACCGACATACT 57.858 39.130 0.00 0.00 0.00 2.12
2597 3078 7.970384 ACACACACCGACATACTATTTATTTG 58.030 34.615 0.00 0.00 0.00 2.32
2601 3082 8.335356 CACACCGACATACTATTTATTTGAAGG 58.665 37.037 0.00 0.00 0.00 3.46
2666 3169 6.503589 TTGTAGCACTAGAACTTCTCTCTC 57.496 41.667 0.00 0.00 35.41 3.20
2667 3170 5.811190 TGTAGCACTAGAACTTCTCTCTCT 58.189 41.667 0.00 0.00 35.41 3.10
2669 3172 7.395617 TGTAGCACTAGAACTTCTCTCTCTAA 58.604 38.462 0.00 0.00 35.41 2.10
2670 3173 7.551262 TGTAGCACTAGAACTTCTCTCTCTAAG 59.449 40.741 0.00 0.00 35.41 2.18
2686 3189 8.568676 TCTCTCTAAGATGGAACTATAATCGG 57.431 38.462 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.162800 CCTGCGGATAAGCCTTCTGC 61.163 60.000 0.00 5.28 44.18 4.26
25 26 2.180769 GAAATGCGGCCGGAAACC 59.819 61.111 27.18 11.79 0.00 3.27
36 40 2.502510 CGCGGCACTGTGAAATGC 60.503 61.111 12.86 7.83 41.29 3.56
53 57 0.593618 TGACAGAGATATCGAGGCGC 59.406 55.000 0.00 0.00 0.00 6.53
54 58 1.876799 ACTGACAGAGATATCGAGGCG 59.123 52.381 10.08 0.00 0.00 5.52
55 59 2.030363 CCACTGACAGAGATATCGAGGC 60.030 54.545 10.08 0.00 0.00 4.70
56 60 2.030363 GCCACTGACAGAGATATCGAGG 60.030 54.545 10.08 0.00 0.00 4.63
57 61 2.884012 AGCCACTGACAGAGATATCGAG 59.116 50.000 10.08 0.00 0.00 4.04
59 63 6.372937 TCTTATAGCCACTGACAGAGATATCG 59.627 42.308 10.08 4.50 0.00 2.92
60 64 7.695480 TCTTATAGCCACTGACAGAGATATC 57.305 40.000 10.08 0.00 0.00 1.63
75 83 5.086104 TCCTATTTGCCGATCTTATAGCC 57.914 43.478 0.00 0.00 0.00 3.93
115 123 5.011943 TCCTAATCCTTTTGTGCAAGCAAAT 59.988 36.000 3.59 0.00 38.05 2.32
131 139 7.585579 AACTAGCAGTAGTAACTCCTAATCC 57.414 40.000 0.00 0.00 38.66 3.01
152 160 4.099727 GCTAGTACTTTAGCAGGCCTAACT 59.900 45.833 3.98 9.10 44.30 2.24
163 171 6.322712 AGGACATCTCCAAGCTAGTACTTTAG 59.677 42.308 0.00 0.00 39.39 1.85
254 270 1.129811 GTAATGGCGGTGCAGTTGTAC 59.870 52.381 0.00 0.00 0.00 2.90
283 301 2.099141 TGTGGTGTTAGATCAGCTGC 57.901 50.000 9.47 0.00 36.85 5.25
308 326 1.153549 GGCCAGCTCTTCGTACAGG 60.154 63.158 0.00 0.00 0.00 4.00
325 343 4.858433 TACGCATCGTTCGGCCGG 62.858 66.667 27.83 9.82 41.54 6.13
326 344 3.613702 GTACGCATCGTTCGGCCG 61.614 66.667 22.12 22.12 41.54 6.13
398 428 0.858583 GACGCCAACAAAATTGCCAC 59.141 50.000 0.00 0.00 0.00 5.01
422 452 5.120399 TCGAGATCTACAGAGGAGAAGAAC 58.880 45.833 0.00 0.00 0.00 3.01
423 453 5.360649 TCGAGATCTACAGAGGAGAAGAA 57.639 43.478 0.00 0.00 0.00 2.52
424 454 5.547465 GATCGAGATCTACAGAGGAGAAGA 58.453 45.833 0.00 0.00 35.04 2.87
425 455 4.388773 CGATCGAGATCTACAGAGGAGAAG 59.611 50.000 10.26 0.00 35.72 2.85
477 507 0.391661 TGGCTAGCCTTTTCAGCTCG 60.392 55.000 33.07 0.00 41.83 5.03
483 513 1.087501 CTCCGTTGGCTAGCCTTTTC 58.912 55.000 33.07 18.68 36.94 2.29
484 514 0.690762 TCTCCGTTGGCTAGCCTTTT 59.309 50.000 33.07 0.00 36.94 2.27
485 515 0.250513 CTCTCCGTTGGCTAGCCTTT 59.749 55.000 33.07 0.00 36.94 3.11
486 516 0.614979 TCTCTCCGTTGGCTAGCCTT 60.615 55.000 33.07 0.00 36.94 4.35
487 517 0.614979 TTCTCTCCGTTGGCTAGCCT 60.615 55.000 33.07 0.00 36.94 4.58
488 518 0.179097 CTTCTCTCCGTTGGCTAGCC 60.179 60.000 27.71 27.71 0.00 3.93
489 519 0.818296 TCTTCTCTCCGTTGGCTAGC 59.182 55.000 6.04 6.04 0.00 3.42
490 520 3.056465 ACTTTCTTCTCTCCGTTGGCTAG 60.056 47.826 0.00 0.00 0.00 3.42
491 521 2.897969 ACTTTCTTCTCTCCGTTGGCTA 59.102 45.455 0.00 0.00 0.00 3.93
492 522 1.694696 ACTTTCTTCTCTCCGTTGGCT 59.305 47.619 0.00 0.00 0.00 4.75
493 523 2.171341 ACTTTCTTCTCTCCGTTGGC 57.829 50.000 0.00 0.00 0.00 4.52
494 524 4.884247 AGTTACTTTCTTCTCTCCGTTGG 58.116 43.478 0.00 0.00 0.00 3.77
495 525 6.679843 AGTAGTTACTTTCTTCTCTCCGTTG 58.320 40.000 0.00 0.00 31.13 4.10
496 526 6.072008 GGAGTAGTTACTTTCTTCTCTCCGTT 60.072 42.308 0.00 0.00 36.50 4.44
497 527 5.415389 GGAGTAGTTACTTTCTTCTCTCCGT 59.585 44.000 0.00 0.00 36.50 4.69
498 528 5.648960 AGGAGTAGTTACTTTCTTCTCTCCG 59.351 44.000 0.00 0.00 42.28 4.63
499 529 6.626402 GCAGGAGTAGTTACTTTCTTCTCTCC 60.626 46.154 0.00 0.00 36.50 3.71
500 530 6.152154 AGCAGGAGTAGTTACTTTCTTCTCTC 59.848 42.308 0.00 0.00 36.50 3.20
501 531 6.014012 AGCAGGAGTAGTTACTTTCTTCTCT 58.986 40.000 0.00 0.00 36.50 3.10
502 532 6.275494 AGCAGGAGTAGTTACTTTCTTCTC 57.725 41.667 0.00 0.00 36.50 2.87
503 533 6.127563 GCTAGCAGGAGTAGTTACTTTCTTCT 60.128 42.308 10.63 0.00 36.50 2.85
504 534 6.037726 GCTAGCAGGAGTAGTTACTTTCTTC 58.962 44.000 10.63 0.00 36.50 2.87
505 535 5.717654 AGCTAGCAGGAGTAGTTACTTTCTT 59.282 40.000 18.83 0.00 36.50 2.52
506 536 5.265989 AGCTAGCAGGAGTAGTTACTTTCT 58.734 41.667 18.83 0.00 36.50 2.52
540 583 3.357079 AAAGCTTGCCGAGTGCCG 61.357 61.111 0.00 0.00 40.16 5.69
585 629 0.824759 ACCTTCTCGATCGAAAGGGG 59.175 55.000 35.54 27.98 0.00 4.79
604 652 4.644103 AGCTTTCGCGGAAGTAATACTA 57.356 40.909 27.18 0.00 42.32 1.82
605 653 3.521947 AGCTTTCGCGGAAGTAATACT 57.478 42.857 27.18 13.15 42.32 2.12
606 654 3.181973 GCTAGCTTTCGCGGAAGTAATAC 59.818 47.826 27.18 11.02 42.32 1.89
847 899 3.696051 GGGCCTTATATACATGGCATGTG 59.304 47.826 36.61 21.81 46.53 3.21
881 933 3.842923 CGACCGATGGCAGAGGCT 61.843 66.667 10.48 0.00 40.87 4.58
907 959 3.128415 TCAATGTGCTTCTCTCTCTCGAG 59.872 47.826 5.93 5.93 38.67 4.04
921 973 3.365832 CAGTGTCAAACAGTCAATGTGC 58.634 45.455 0.00 0.00 43.00 4.57
923 975 3.620488 ACCAGTGTCAAACAGTCAATGT 58.380 40.909 0.00 0.00 46.97 2.71
971 1029 0.738389 AAGCTCAACACAACCAACCG 59.262 50.000 0.00 0.00 0.00 4.44
981 1039 0.469494 TCTCACCAGCAAGCTCAACA 59.531 50.000 0.00 0.00 0.00 3.33
983 1041 1.612462 CCATCTCACCAGCAAGCTCAA 60.612 52.381 0.00 0.00 0.00 3.02
984 1042 0.035725 CCATCTCACCAGCAAGCTCA 60.036 55.000 0.00 0.00 0.00 4.26
985 1043 0.251354 TCCATCTCACCAGCAAGCTC 59.749 55.000 0.00 0.00 0.00 4.09
986 1044 0.917533 ATCCATCTCACCAGCAAGCT 59.082 50.000 0.00 0.00 0.00 3.74
987 1045 1.674962 GAATCCATCTCACCAGCAAGC 59.325 52.381 0.00 0.00 0.00 4.01
989 1047 2.356432 CCAGAATCCATCTCACCAGCAA 60.356 50.000 0.00 0.00 35.73 3.91
1004 1064 1.546323 CCAGACACTTGCCACCAGAAT 60.546 52.381 0.00 0.00 0.00 2.40
1066 1126 2.179018 GGTGTACTTCGCCGCGTA 59.821 61.111 13.39 1.60 36.95 4.42
1185 1252 1.934410 ACTAGAAAGGTACGTGGCCT 58.066 50.000 3.32 2.48 38.11 5.19
1188 1255 7.008628 CGTAAATGTTACTAGAAAGGTACGTGG 59.991 40.741 0.00 0.00 0.00 4.94
1196 1263 8.027771 AGACCAGACGTAAATGTTACTAGAAAG 58.972 37.037 0.00 0.00 0.00 2.62
1221 1291 3.877559 TGGATCAGTAAATGAGTGGCAG 58.122 45.455 0.00 0.00 42.53 4.85
1269 1340 5.178623 CGTAGTTGAACACTGCCAAGATAAA 59.821 40.000 0.00 0.00 34.70 1.40
1272 1343 3.067106 CGTAGTTGAACACTGCCAAGAT 58.933 45.455 0.00 0.00 34.70 2.40
1273 1344 2.479837 CGTAGTTGAACACTGCCAAGA 58.520 47.619 0.00 0.00 34.70 3.02
1277 1349 1.866925 GGCGTAGTTGAACACTGCC 59.133 57.895 8.55 8.55 34.70 4.85
1698 1776 2.413765 GCCCGTCTAGAAGAGCCG 59.586 66.667 7.30 0.00 0.00 5.52
1720 1798 3.958860 GCACTGCCTCCACCCTGT 61.959 66.667 0.00 0.00 0.00 4.00
1812 1905 3.251004 CAGTCCCTTCCGTCAAAAGAAAG 59.749 47.826 0.00 0.00 0.00 2.62
1827 1920 1.402787 CACAACAAAAGCCAGTCCCT 58.597 50.000 0.00 0.00 0.00 4.20
1834 1927 0.107945 TGCCAACCACAACAAAAGCC 60.108 50.000 0.00 0.00 0.00 4.35
1941 2038 7.636579 TGCCTATAGATAAATGATCCAAGCAT 58.363 34.615 0.00 0.00 34.80 3.79
1992 2099 6.901265 TCATACGCCACATGAATGAATTATG 58.099 36.000 0.00 0.00 29.55 1.90
2084 2200 3.294214 AGCCAACCATCCAAGATCAATC 58.706 45.455 0.00 0.00 0.00 2.67
2144 2291 1.677052 TCCCTAAAACGGTGCACAAAC 59.323 47.619 20.43 0.00 0.00 2.93
2145 2292 1.950909 CTCCCTAAAACGGTGCACAAA 59.049 47.619 20.43 0.00 0.00 2.83
2146 2293 1.600023 CTCCCTAAAACGGTGCACAA 58.400 50.000 20.43 0.00 0.00 3.33
2147 2294 0.250553 CCTCCCTAAAACGGTGCACA 60.251 55.000 20.43 0.00 0.00 4.57
2148 2295 1.583495 GCCTCCCTAAAACGGTGCAC 61.583 60.000 8.80 8.80 0.00 4.57
2149 2296 1.302993 GCCTCCCTAAAACGGTGCA 60.303 57.895 0.00 0.00 0.00 4.57
2150 2297 0.251073 TAGCCTCCCTAAAACGGTGC 59.749 55.000 0.00 0.00 0.00 5.01
2151 2298 2.773993 TTAGCCTCCCTAAAACGGTG 57.226 50.000 0.00 0.00 33.18 4.94
2152 2299 3.522343 AGAATTAGCCTCCCTAAAACGGT 59.478 43.478 0.00 0.00 39.36 4.83
2153 2300 3.877508 CAGAATTAGCCTCCCTAAAACGG 59.122 47.826 0.00 0.00 39.36 4.44
2154 2301 4.514401 ACAGAATTAGCCTCCCTAAAACG 58.486 43.478 0.00 0.00 39.36 3.60
2155 2302 5.393135 GCAACAGAATTAGCCTCCCTAAAAC 60.393 44.000 0.00 0.00 39.36 2.43
2156 2303 4.705023 GCAACAGAATTAGCCTCCCTAAAA 59.295 41.667 0.00 0.00 39.36 1.52
2157 2304 4.018415 AGCAACAGAATTAGCCTCCCTAAA 60.018 41.667 0.00 0.00 39.36 1.85
2158 2305 3.523564 AGCAACAGAATTAGCCTCCCTAA 59.476 43.478 0.00 0.00 40.16 2.69
2159 2306 3.115390 AGCAACAGAATTAGCCTCCCTA 58.885 45.455 0.00 0.00 0.00 3.53
2160 2307 1.918957 AGCAACAGAATTAGCCTCCCT 59.081 47.619 0.00 0.00 0.00 4.20
2161 2308 2.293170 GAGCAACAGAATTAGCCTCCC 58.707 52.381 0.00 0.00 0.00 4.30
2162 2309 2.991250 TGAGCAACAGAATTAGCCTCC 58.009 47.619 0.00 0.00 0.00 4.30
2163 2310 4.194640 TCATGAGCAACAGAATTAGCCTC 58.805 43.478 0.00 0.00 0.00 4.70
2164 2311 4.226427 TCATGAGCAACAGAATTAGCCT 57.774 40.909 0.00 0.00 0.00 4.58
2165 2312 4.970662 TTCATGAGCAACAGAATTAGCC 57.029 40.909 0.00 0.00 0.00 3.93
2166 2313 8.915871 TTTAATTCATGAGCAACAGAATTAGC 57.084 30.769 0.00 0.00 38.36 3.09
2175 2322 9.727627 CCTCTCTTTATTTAATTCATGAGCAAC 57.272 33.333 0.00 0.00 0.00 4.17
2176 2323 9.685276 TCCTCTCTTTATTTAATTCATGAGCAA 57.315 29.630 0.00 0.00 0.00 3.91
2177 2324 9.685276 TTCCTCTCTTTATTTAATTCATGAGCA 57.315 29.630 0.00 0.00 0.00 4.26
2195 2342 9.745018 TGTTTTTGAGAAATCATATTCCTCTCT 57.255 29.630 0.00 0.00 34.80 3.10
2204 2351 9.376075 TGCAGTTTTTGTTTTTGAGAAATCATA 57.624 25.926 0.00 0.00 0.00 2.15
2205 2352 8.266392 TGCAGTTTTTGTTTTTGAGAAATCAT 57.734 26.923 0.00 0.00 0.00 2.45
2206 2353 7.664082 TGCAGTTTTTGTTTTTGAGAAATCA 57.336 28.000 0.00 0.00 0.00 2.57
2207 2354 8.947304 TTTGCAGTTTTTGTTTTTGAGAAATC 57.053 26.923 0.00 0.00 0.00 2.17
2208 2355 9.179552 GTTTTGCAGTTTTTGTTTTTGAGAAAT 57.820 25.926 0.00 0.00 0.00 2.17
2209 2356 7.645735 GGTTTTGCAGTTTTTGTTTTTGAGAAA 59.354 29.630 0.00 0.00 0.00 2.52
2210 2357 7.135467 GGTTTTGCAGTTTTTGTTTTTGAGAA 58.865 30.769 0.00 0.00 0.00 2.87
2211 2358 6.293680 GGGTTTTGCAGTTTTTGTTTTTGAGA 60.294 34.615 0.00 0.00 0.00 3.27
2212 2359 5.855925 GGGTTTTGCAGTTTTTGTTTTTGAG 59.144 36.000 0.00 0.00 0.00 3.02
2213 2360 5.278512 GGGGTTTTGCAGTTTTTGTTTTTGA 60.279 36.000 0.00 0.00 0.00 2.69
2214 2361 4.920340 GGGGTTTTGCAGTTTTTGTTTTTG 59.080 37.500 0.00 0.00 0.00 2.44
2215 2362 4.320567 CGGGGTTTTGCAGTTTTTGTTTTT 60.321 37.500 0.00 0.00 0.00 1.94
2216 2363 3.189495 CGGGGTTTTGCAGTTTTTGTTTT 59.811 39.130 0.00 0.00 0.00 2.43
2217 2364 2.744741 CGGGGTTTTGCAGTTTTTGTTT 59.255 40.909 0.00 0.00 0.00 2.83
2218 2365 2.351455 CGGGGTTTTGCAGTTTTTGTT 58.649 42.857 0.00 0.00 0.00 2.83
2219 2366 2.009542 GCGGGGTTTTGCAGTTTTTGT 61.010 47.619 0.00 0.00 0.00 2.83
2220 2367 0.655208 GCGGGGTTTTGCAGTTTTTG 59.345 50.000 0.00 0.00 0.00 2.44
2221 2368 0.808060 CGCGGGGTTTTGCAGTTTTT 60.808 50.000 0.00 0.00 0.00 1.94
2222 2369 1.227118 CGCGGGGTTTTGCAGTTTT 60.227 52.632 0.00 0.00 0.00 2.43
2223 2370 2.415426 CGCGGGGTTTTGCAGTTT 59.585 55.556 0.00 0.00 0.00 2.66
2224 2371 4.279043 GCGCGGGGTTTTGCAGTT 62.279 61.111 8.83 0.00 0.00 3.16
2225 2372 3.835790 TAGCGCGGGGTTTTGCAGT 62.836 57.895 10.18 0.00 0.00 4.40
2226 2373 3.039202 CTAGCGCGGGGTTTTGCAG 62.039 63.158 10.18 0.00 0.00 4.41
2227 2374 3.053291 CTAGCGCGGGGTTTTGCA 61.053 61.111 10.18 0.00 0.00 4.08
2228 2375 3.810896 CCTAGCGCGGGGTTTTGC 61.811 66.667 10.18 0.00 0.00 3.68
2229 2376 3.810896 GCCTAGCGCGGGGTTTTG 61.811 66.667 20.58 0.00 0.00 2.44
2230 2377 3.971109 GAGCCTAGCGCGGGGTTTT 62.971 63.158 23.31 10.56 44.76 2.43
2231 2378 4.468689 GAGCCTAGCGCGGGGTTT 62.469 66.667 23.31 12.60 44.76 3.27
2235 2382 4.593864 GAAGGAGCCTAGCGCGGG 62.594 72.222 8.83 16.25 44.76 6.13
2236 2383 4.593864 GGAAGGAGCCTAGCGCGG 62.594 72.222 8.83 0.00 44.76 6.46
2241 2388 5.359194 TTGACTATTTGGAAGGAGCCTAG 57.641 43.478 0.00 0.00 0.00 3.02
2329 2476 6.100004 GGATTTGTCTTCTGTGTAGATCGAA 58.900 40.000 0.00 0.00 31.81 3.71
2342 2489 6.076981 ACATTCACAGTTGGATTTGTCTTC 57.923 37.500 0.00 0.00 0.00 2.87
2358 2670 1.271379 GGGGGAAAAACCGACATTCAC 59.729 52.381 0.00 0.00 40.11 3.18
2367 2679 5.010719 CAGTCTCTTTTAAGGGGGAAAAACC 59.989 44.000 0.00 0.00 38.08 3.27
2368 2680 5.831525 TCAGTCTCTTTTAAGGGGGAAAAAC 59.168 40.000 0.00 0.00 0.00 2.43
2374 2687 4.079970 GGTTTCAGTCTCTTTTAAGGGGG 58.920 47.826 0.00 0.00 0.00 5.40
2376 2689 3.188667 GCGGTTTCAGTCTCTTTTAAGGG 59.811 47.826 0.00 0.00 0.00 3.95
2379 2692 3.811083 TGGCGGTTTCAGTCTCTTTTAA 58.189 40.909 0.00 0.00 0.00 1.52
2425 2738 7.015680 TGGTATGGGCAATCAATAATAATGGT 58.984 34.615 0.00 0.00 0.00 3.55
2431 2744 8.489676 TTGTAATGGTATGGGCAATCAATAAT 57.510 30.769 0.00 0.00 0.00 1.28
2432 2745 7.782168 TCTTGTAATGGTATGGGCAATCAATAA 59.218 33.333 0.00 0.00 0.00 1.40
2433 2746 7.293828 TCTTGTAATGGTATGGGCAATCAATA 58.706 34.615 0.00 0.00 0.00 1.90
2434 2747 6.135454 TCTTGTAATGGTATGGGCAATCAAT 58.865 36.000 0.00 0.00 0.00 2.57
2485 2801 5.971763 AGATGTGAATAGTGTCTGGAAGTC 58.028 41.667 0.00 0.00 33.76 3.01
2500 2823 6.265196 ACCAGCAAGACAAATTTAGATGTGAA 59.735 34.615 0.00 0.00 0.00 3.18
2577 3058 8.335356 CACCTTCAAATAAATAGTATGTCGGTG 58.665 37.037 0.00 0.00 0.00 4.94
2579 3060 8.335356 CACACCTTCAAATAAATAGTATGTCGG 58.665 37.037 0.00 0.00 0.00 4.79
2581 3062 8.893727 AGCACACCTTCAAATAAATAGTATGTC 58.106 33.333 0.00 0.00 0.00 3.06
2588 3069 7.361713 GCACTGTAGCACACCTTCAAATAAATA 60.362 37.037 0.00 0.00 0.00 1.40
2597 3078 3.305709 TGCACTGTAGCACACCTTC 57.694 52.632 1.65 0.00 40.11 3.46
2625 3125 4.438346 GCAGTATGGGTGCTACCG 57.562 61.111 0.00 0.00 39.83 4.02
2666 3169 9.197694 CTTTGACCGATTATAGTTCCATCTTAG 57.802 37.037 0.00 0.00 0.00 2.18
2667 3170 7.656137 GCTTTGACCGATTATAGTTCCATCTTA 59.344 37.037 0.00 0.00 0.00 2.10
2669 3172 5.992217 GCTTTGACCGATTATAGTTCCATCT 59.008 40.000 0.00 0.00 0.00 2.90
2670 3173 5.179555 GGCTTTGACCGATTATAGTTCCATC 59.820 44.000 0.00 0.00 0.00 3.51
2686 3189 1.300620 GTTTTGGCGGGGCTTTGAC 60.301 57.895 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.