Multiple sequence alignment - TraesCS7D01G178000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G178000 chr7D 100.000 3227 0 0 1 3227 131270964 131267738 0.000000e+00 5960.0
1 TraesCS7D01G178000 chr7D 98.973 292 2 1 2937 3227 131244323 131244032 3.690000e-144 521.0
2 TraesCS7D01G178000 chr7D 97.938 291 6 0 2937 3227 138550007 138549717 3.720000e-139 505.0
3 TraesCS7D01G178000 chr7D 97.595 291 7 0 2937 3227 224751501 224751211 1.730000e-137 499.0
4 TraesCS7D01G178000 chr7D 97.586 290 7 0 2938 3227 219512157 219511868 6.220000e-137 497.0
5 TraesCS7D01G178000 chr7D 87.671 292 20 6 1274 1550 421864325 421864615 3.100000e-85 326.0
6 TraesCS7D01G178000 chr7A 91.411 2282 98 53 536 2759 130092557 130090316 0.000000e+00 3038.0
7 TraesCS7D01G178000 chr7A 88.106 454 34 8 842 1287 130168065 130167624 3.690000e-144 521.0
8 TraesCS7D01G178000 chr7A 89.770 391 32 6 93 481 130093031 130092647 8.040000e-136 494.0
9 TraesCS7D01G178000 chr7A 86.585 246 13 7 1325 1550 164664435 164664680 1.490000e-63 254.0
10 TraesCS7D01G178000 chr7A 79.130 345 39 21 321 653 130169402 130169079 1.170000e-49 207.0
11 TraesCS7D01G178000 chr7A 89.256 121 10 3 657 774 130168193 130168073 7.210000e-32 148.0
12 TraesCS7D01G178000 chr7A 89.394 66 6 1 27 92 130093129 130093065 7.420000e-12 82.4
13 TraesCS7D01G178000 chr7A 97.059 34 1 0 236 269 130169465 130169432 1.250000e-04 58.4
14 TraesCS7D01G178000 chr7B 92.929 2093 86 23 883 2937 92063729 92061661 0.000000e+00 2988.0
15 TraesCS7D01G178000 chr7B 88.583 762 52 19 135 878 92064679 92063935 0.000000e+00 893.0
16 TraesCS7D01G178000 chr2D 97.959 294 6 0 2934 3227 97059092 97059385 7.990000e-141 510.0
17 TraesCS7D01G178000 chrUn 97.938 291 6 0 2937 3227 101440282 101440572 3.720000e-139 505.0
18 TraesCS7D01G178000 chrUn 97.619 294 7 0 2934 3227 101450103 101450396 3.720000e-139 505.0
19 TraesCS7D01G178000 chrUn 86.364 242 16 10 1325 1551 75945023 75945262 6.910000e-62 248.0
20 TraesCS7D01G178000 chr6A 84.574 551 36 18 1004 1539 17057340 17057856 4.810000e-138 501.0
21 TraesCS7D01G178000 chr6A 79.861 144 27 2 1428 1570 584911795 584911653 1.580000e-18 104.0
22 TraesCS7D01G178000 chr4D 97.595 291 7 0 2937 3227 107647060 107646770 1.730000e-137 499.0
23 TraesCS7D01G178000 chr3D 97.595 291 7 0 2937 3227 534460226 534459936 1.730000e-137 499.0
24 TraesCS7D01G178000 chr3D 85.246 305 26 10 989 1290 418165502 418165790 2.430000e-76 296.0
25 TraesCS7D01G178000 chr6B 86.364 242 17 9 1325 1551 9966851 9966611 1.920000e-62 250.0
26 TraesCS7D01G178000 chr6B 81.250 144 25 2 1428 1570 659936287 659936145 7.320000e-22 115.0
27 TraesCS7D01G178000 chr1A 86.235 247 13 6 1325 1550 84273578 84273824 6.910000e-62 248.0
28 TraesCS7D01G178000 chr5D 75.388 451 71 29 1162 1599 361404828 361404405 7.110000e-42 182.0
29 TraesCS7D01G178000 chr3A 82.353 153 21 5 1427 1576 716988408 716988557 9.400000e-26 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G178000 chr7D 131267738 131270964 3226 True 5960.0 5960 100.000000 1 3227 1 chr7D.!!$R2 3226
1 TraesCS7D01G178000 chr7A 130090316 130093129 2813 True 1204.8 3038 90.191667 27 2759 3 chr7A.!!$R1 2732
2 TraesCS7D01G178000 chr7A 130167624 130169465 1841 True 233.6 521 88.387750 236 1287 4 chr7A.!!$R2 1051
3 TraesCS7D01G178000 chr7B 92061661 92064679 3018 True 1940.5 2988 90.756000 135 2937 2 chr7B.!!$R1 2802
4 TraesCS7D01G178000 chr6A 17057340 17057856 516 False 501.0 501 84.574000 1004 1539 1 chr6A.!!$F1 535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
106 139 0.035630 AGTTCAGGACTGCTGGCATC 60.036 55.0 0.0 0.0 37.17 3.91 F
686 1670 0.036306 AAGTAAGCACCCCTTGTCGG 59.964 55.0 0.0 0.0 34.95 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1683 2945 0.560193 CCTCCCTCATCCTCTCCTCA 59.440 60.0 0.00 0.0 0.0 3.86 R
2669 3959 0.108138 CCACACCGGGATCTCTGAAC 60.108 60.0 6.32 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.676216 AAAAACCGGACGGCATCC 58.324 55.556 9.46 0.00 45.20 3.51
33 34 1.464997 GACGGCATCCACTCACTTTTC 59.535 52.381 0.00 0.00 0.00 2.29
42 43 2.684881 CCACTCACTTTTCAGCTGTGTT 59.315 45.455 14.67 0.00 33.82 3.32
48 49 6.119144 TCACTTTTCAGCTGTGTTAAGTTC 57.881 37.500 14.67 0.00 30.86 3.01
77 78 6.778069 TCCAATTCAACAGGGTACAAAATGTA 59.222 34.615 0.00 0.00 0.00 2.29
98 131 4.543590 ACTACCATGAAGTTCAGGACTG 57.456 45.455 18.73 8.04 39.00 3.51
99 132 2.191128 ACCATGAAGTTCAGGACTGC 57.809 50.000 18.73 0.00 39.00 4.40
101 134 2.082231 CCATGAAGTTCAGGACTGCTG 58.918 52.381 18.73 6.28 39.00 4.41
106 139 0.035630 AGTTCAGGACTGCTGGCATC 60.036 55.000 0.00 0.00 37.17 3.91
131 164 1.966451 GGTCCCTGGCAAGTTGTCG 60.966 63.158 2.48 0.00 0.00 4.35
139 172 1.344438 TGGCAAGTTGTCGTCAGAGAT 59.656 47.619 2.48 0.00 0.00 2.75
234 270 0.892755 TTCGAGCTCAACGGTACCAT 59.107 50.000 15.40 0.00 0.00 3.55
284 320 7.333423 GGATTTTTCTTTATTTTCGGGGGAAAG 59.667 37.037 0.00 0.00 0.00 2.62
512 554 2.356194 GTTGCCGCCCTTGCTTTG 60.356 61.111 0.00 0.00 34.43 2.77
513 555 2.837291 TTGCCGCCCTTGCTTTGT 60.837 55.556 0.00 0.00 34.43 2.83
514 556 1.529478 TTGCCGCCCTTGCTTTGTA 60.529 52.632 0.00 0.00 34.43 2.41
515 557 0.897863 TTGCCGCCCTTGCTTTGTAT 60.898 50.000 0.00 0.00 34.43 2.29
525 603 4.155826 CCCTTGCTTTGTATTGTGAATCGA 59.844 41.667 0.00 0.00 0.00 3.59
527 605 4.678509 TGCTTTGTATTGTGAATCGACC 57.321 40.909 0.00 0.00 0.00 4.79
610 698 3.349006 AGCCACGTCGCTTGCTTG 61.349 61.111 0.31 0.00 34.73 4.01
622 711 1.873698 CTTGCTTGCCAGTTTTGCAT 58.126 45.000 0.00 0.00 38.76 3.96
628 717 0.821301 TGCCAGTTTTGCATCACCGA 60.821 50.000 0.00 0.00 32.85 4.69
633 722 0.385473 GTTTTGCATCACCGACCGTG 60.385 55.000 0.00 0.00 44.50 4.94
655 1639 3.044959 GTACTACGTACGTTCTCCAGC 57.955 52.381 27.92 7.17 29.20 4.85
656 1640 0.807496 ACTACGTACGTTCTCCAGCC 59.193 55.000 27.92 0.00 0.00 4.85
672 1656 1.902508 CAGCCTCCAGGAGTCAAGTAA 59.097 52.381 15.86 0.00 37.39 2.24
681 1665 1.351350 GGAGTCAAGTAAGCACCCCTT 59.649 52.381 0.00 0.00 37.57 3.95
686 1670 0.036306 AAGTAAGCACCCCTTGTCGG 59.964 55.000 0.00 0.00 34.95 4.79
899 2097 1.585214 CGTTCCGGTCGCAAAGTATAC 59.415 52.381 0.00 0.00 0.00 1.47
1118 2341 4.116328 CAGGAAGAGCGACGGCGA 62.116 66.667 18.90 0.00 46.35 5.54
1609 2871 2.048222 CCGCGGCTGAAGAGAACA 60.048 61.111 14.67 0.00 0.00 3.18
1698 2960 0.317799 CGCATGAGGAGAGGATGAGG 59.682 60.000 0.00 0.00 0.00 3.86
1707 2969 4.804420 AGGATGAGGGAGGCGGCA 62.804 66.667 13.08 0.00 0.00 5.69
2230 3492 1.585006 GTCCGGCGAGTCTGAAAGA 59.415 57.895 9.30 0.00 43.69 2.52
2256 3520 1.661821 GGGATTCGATCGCTGGTCG 60.662 63.158 11.09 5.09 38.98 4.79
2257 3521 1.065928 GGATTCGATCGCTGGTCGT 59.934 57.895 11.09 0.00 39.91 4.34
2258 3522 0.935366 GGATTCGATCGCTGGTCGTC 60.935 60.000 11.09 0.45 39.91 4.20
2259 3523 0.029567 GATTCGATCGCTGGTCGTCT 59.970 55.000 11.09 1.16 39.91 4.18
2260 3524 0.029567 ATTCGATCGCTGGTCGTCTC 59.970 55.000 11.09 0.00 39.91 3.36
2262 3526 2.024871 GATCGCTGGTCGTCTCGG 59.975 66.667 0.00 0.00 39.67 4.63
2263 3527 4.194720 ATCGCTGGTCGTCTCGGC 62.195 66.667 0.00 0.00 39.67 5.54
2381 3651 2.030946 GCGACGAGGATTGAAAATGAGG 59.969 50.000 0.00 0.00 0.00 3.86
2669 3959 1.987770 GTCGGTGTGTATACGTTGGTG 59.012 52.381 0.00 0.00 0.00 4.17
2674 3964 3.430895 GGTGTGTATACGTTGGTGTTCAG 59.569 47.826 0.00 0.00 0.00 3.02
2693 3983 3.327404 GATCCCGGTGTGGTGGGT 61.327 66.667 0.00 0.00 46.13 4.51
2725 4015 8.879342 ATTAGATCAGACTAGTTTATGTGCAC 57.121 34.615 10.75 10.75 0.00 4.57
2762 4052 0.040204 CTCCATTGGGGGCTTCTGTT 59.960 55.000 2.09 0.00 37.22 3.16
2828 4119 0.454957 CGCTTCCATGTTTTCTGCCG 60.455 55.000 0.00 0.00 0.00 5.69
2862 4153 1.200020 CAAGCCATCCTCACCGTTTTC 59.800 52.381 0.00 0.00 0.00 2.29
2873 4165 3.202906 TCACCGTTTTCTGAAGAACCTG 58.797 45.455 0.00 6.05 33.13 4.00
2883 4175 4.947883 TCTGAAGAACCTGGAATCCTAGA 58.052 43.478 0.00 0.53 0.00 2.43
2891 4183 0.959553 TGGAATCCTAGACGCGATCC 59.040 55.000 15.93 7.49 0.00 3.36
2892 4184 1.249407 GGAATCCTAGACGCGATCCT 58.751 55.000 15.93 9.48 0.00 3.24
2909 4202 6.082984 GCGATCCTTTTCTCTCTTTTTCTTG 58.917 40.000 0.00 0.00 0.00 3.02
2916 4209 7.550551 CCTTTTCTCTCTTTTTCTTGCCTTTTT 59.449 33.333 0.00 0.00 0.00 1.94
2922 4215 5.367302 TCTTTTTCTTGCCTTTTTCCATGG 58.633 37.500 4.97 4.97 0.00 3.66
2932 4225 3.006859 CCTTTTTCCATGGTTCCTGTTCC 59.993 47.826 12.58 0.00 0.00 3.62
2937 4230 2.176798 TCCATGGTTCCTGTTCCAGTTT 59.823 45.455 12.58 0.00 37.14 2.66
2938 4231 2.297033 CCATGGTTCCTGTTCCAGTTTG 59.703 50.000 2.57 0.00 37.14 2.93
2939 4232 2.818751 TGGTTCCTGTTCCAGTTTGT 57.181 45.000 0.00 0.00 0.00 2.83
2940 4233 2.650322 TGGTTCCTGTTCCAGTTTGTC 58.350 47.619 0.00 0.00 0.00 3.18
2941 4234 2.025793 TGGTTCCTGTTCCAGTTTGTCA 60.026 45.455 0.00 0.00 0.00 3.58
2942 4235 2.357952 GGTTCCTGTTCCAGTTTGTCAC 59.642 50.000 0.00 0.00 0.00 3.67
2943 4236 1.948104 TCCTGTTCCAGTTTGTCACG 58.052 50.000 0.00 0.00 0.00 4.35
2944 4237 1.483004 TCCTGTTCCAGTTTGTCACGA 59.517 47.619 0.00 0.00 0.00 4.35
2945 4238 1.597663 CCTGTTCCAGTTTGTCACGAC 59.402 52.381 0.00 0.00 0.00 4.34
2946 4239 1.597663 CTGTTCCAGTTTGTCACGACC 59.402 52.381 0.00 0.00 0.00 4.79
2947 4240 0.580104 GTTCCAGTTTGTCACGACCG 59.420 55.000 0.00 0.00 0.00 4.79
2948 4241 0.531090 TTCCAGTTTGTCACGACCGG 60.531 55.000 0.00 0.00 0.00 5.28
2949 4242 1.227438 CCAGTTTGTCACGACCGGT 60.227 57.895 6.92 6.92 0.00 5.28
2950 4243 0.812412 CCAGTTTGTCACGACCGGTT 60.812 55.000 9.42 0.00 0.00 4.44
2951 4244 1.011333 CAGTTTGTCACGACCGGTTT 58.989 50.000 9.42 0.00 0.00 3.27
2952 4245 1.399089 CAGTTTGTCACGACCGGTTTT 59.601 47.619 9.42 0.00 0.00 2.43
2953 4246 2.086094 AGTTTGTCACGACCGGTTTTT 58.914 42.857 9.42 0.00 0.00 1.94
2954 4247 2.096335 AGTTTGTCACGACCGGTTTTTC 59.904 45.455 9.42 0.00 0.00 2.29
2955 4248 1.735386 TTGTCACGACCGGTTTTTCA 58.265 45.000 9.42 2.23 0.00 2.69
2956 4249 1.735386 TGTCACGACCGGTTTTTCAA 58.265 45.000 9.42 0.00 0.00 2.69
2957 4250 2.290464 TGTCACGACCGGTTTTTCAAT 58.710 42.857 9.42 0.00 0.00 2.57
2958 4251 3.464907 TGTCACGACCGGTTTTTCAATA 58.535 40.909 9.42 0.00 0.00 1.90
2959 4252 3.875727 TGTCACGACCGGTTTTTCAATAA 59.124 39.130 9.42 0.00 0.00 1.40
2960 4253 4.334759 TGTCACGACCGGTTTTTCAATAAA 59.665 37.500 9.42 0.00 0.00 1.40
2961 4254 5.163683 TGTCACGACCGGTTTTTCAATAAAA 60.164 36.000 9.42 0.00 32.75 1.52
2962 4255 5.916320 GTCACGACCGGTTTTTCAATAAAAT 59.084 36.000 9.42 0.00 34.62 1.82
2963 4256 7.076983 GTCACGACCGGTTTTTCAATAAAATA 58.923 34.615 9.42 0.00 34.62 1.40
2964 4257 7.590689 GTCACGACCGGTTTTTCAATAAAATAA 59.409 33.333 9.42 0.00 34.62 1.40
2965 4258 8.298140 TCACGACCGGTTTTTCAATAAAATAAT 58.702 29.630 9.42 0.00 34.62 1.28
2966 4259 8.917655 CACGACCGGTTTTTCAATAAAATAATT 58.082 29.630 9.42 0.00 34.62 1.40
2984 4277 9.942526 AAAATAATTATTGAGAGACCAATCCCT 57.057 29.630 11.42 0.00 37.81 4.20
2985 4278 9.942526 AAATAATTATTGAGAGACCAATCCCTT 57.057 29.630 11.42 0.00 37.81 3.95
2986 4279 9.942526 AATAATTATTGAGAGACCAATCCCTTT 57.057 29.630 9.93 0.00 37.81 3.11
2987 4280 9.942526 ATAATTATTGAGAGACCAATCCCTTTT 57.057 29.630 0.00 0.00 37.81 2.27
2989 4282 8.753497 ATTATTGAGAGACCAATCCCTTTTAC 57.247 34.615 0.00 0.00 37.81 2.01
2990 4283 4.202245 TGAGAGACCAATCCCTTTTACG 57.798 45.455 0.00 0.00 0.00 3.18
2991 4284 3.055385 TGAGAGACCAATCCCTTTTACGG 60.055 47.826 0.00 0.00 0.00 4.02
2992 4285 3.178865 AGAGACCAATCCCTTTTACGGA 58.821 45.455 0.00 0.00 0.00 4.69
2993 4286 3.055312 AGAGACCAATCCCTTTTACGGAC 60.055 47.826 0.00 0.00 30.39 4.79
2994 4287 2.026542 AGACCAATCCCTTTTACGGACC 60.027 50.000 0.00 0.00 30.39 4.46
2995 4288 1.706305 ACCAATCCCTTTTACGGACCA 59.294 47.619 0.00 0.00 30.39 4.02
2996 4289 2.290705 ACCAATCCCTTTTACGGACCAG 60.291 50.000 0.00 0.00 30.39 4.00
2997 4290 1.743394 CAATCCCTTTTACGGACCAGC 59.257 52.381 0.00 0.00 30.39 4.85
2998 4291 0.107848 ATCCCTTTTACGGACCAGCG 60.108 55.000 0.00 0.00 30.39 5.18
2999 4292 1.186917 TCCCTTTTACGGACCAGCGA 61.187 55.000 0.00 0.00 0.00 4.93
3000 4293 0.320946 CCCTTTTACGGACCAGCGAA 60.321 55.000 0.00 0.00 0.00 4.70
3001 4294 1.076332 CCTTTTACGGACCAGCGAAG 58.924 55.000 0.00 0.00 0.00 3.79
3002 4295 1.337447 CCTTTTACGGACCAGCGAAGA 60.337 52.381 0.00 0.00 0.00 2.87
3003 4296 2.409975 CTTTTACGGACCAGCGAAGAA 58.590 47.619 0.00 0.00 0.00 2.52
3004 4297 2.074547 TTTACGGACCAGCGAAGAAG 57.925 50.000 0.00 0.00 0.00 2.85
3005 4298 1.250328 TTACGGACCAGCGAAGAAGA 58.750 50.000 0.00 0.00 0.00 2.87
3006 4299 1.250328 TACGGACCAGCGAAGAAGAA 58.750 50.000 0.00 0.00 0.00 2.52
3007 4300 0.608640 ACGGACCAGCGAAGAAGAAT 59.391 50.000 0.00 0.00 0.00 2.40
3008 4301 1.002087 ACGGACCAGCGAAGAAGAATT 59.998 47.619 0.00 0.00 0.00 2.17
3027 4320 7.554959 AGAATTCCTTCTTACTGGTAGACAA 57.445 36.000 0.65 0.00 38.63 3.18
3028 4321 8.152023 AGAATTCCTTCTTACTGGTAGACAAT 57.848 34.615 0.65 0.00 38.63 2.71
3029 4322 9.268282 AGAATTCCTTCTTACTGGTAGACAATA 57.732 33.333 0.65 0.00 38.63 1.90
3030 4323 9.886132 GAATTCCTTCTTACTGGTAGACAATAA 57.114 33.333 0.00 0.00 0.00 1.40
3033 4326 8.840200 TCCTTCTTACTGGTAGACAATAATCT 57.160 34.615 0.00 0.00 0.00 2.40
3034 4327 9.268282 TCCTTCTTACTGGTAGACAATAATCTT 57.732 33.333 0.00 0.00 0.00 2.40
3035 4328 9.319143 CCTTCTTACTGGTAGACAATAATCTTG 57.681 37.037 0.00 0.00 0.00 3.02
3036 4329 9.319143 CTTCTTACTGGTAGACAATAATCTTGG 57.681 37.037 0.00 0.00 0.00 3.61
3037 4330 8.375493 TCTTACTGGTAGACAATAATCTTGGT 57.625 34.615 0.00 0.00 0.00 3.67
3038 4331 8.475639 TCTTACTGGTAGACAATAATCTTGGTC 58.524 37.037 0.00 0.00 0.00 4.02
3039 4332 6.620877 ACTGGTAGACAATAATCTTGGTCA 57.379 37.500 0.00 0.00 32.79 4.02
3040 4333 6.407202 ACTGGTAGACAATAATCTTGGTCAC 58.593 40.000 0.00 0.00 32.79 3.67
3041 4334 6.013725 ACTGGTAGACAATAATCTTGGTCACA 60.014 38.462 0.00 0.00 32.79 3.58
3042 4335 6.406370 TGGTAGACAATAATCTTGGTCACAG 58.594 40.000 0.00 0.00 32.79 3.66
3043 4336 6.212589 TGGTAGACAATAATCTTGGTCACAGA 59.787 38.462 0.00 0.00 32.79 3.41
3044 4337 7.103641 GGTAGACAATAATCTTGGTCACAGAA 58.896 38.462 0.00 0.00 32.79 3.02
3045 4338 7.606456 GGTAGACAATAATCTTGGTCACAGAAA 59.394 37.037 0.00 0.00 32.79 2.52
3046 4339 8.999431 GTAGACAATAATCTTGGTCACAGAAAA 58.001 33.333 0.00 0.00 32.79 2.29
3047 4340 8.463930 AGACAATAATCTTGGTCACAGAAAAA 57.536 30.769 0.00 0.00 32.79 1.94
3076 4369 7.983166 ACCAGGAGTACTAAATATAACACCA 57.017 36.000 0.00 0.00 0.00 4.17
3077 4370 8.019656 ACCAGGAGTACTAAATATAACACCAG 57.980 38.462 0.00 0.00 0.00 4.00
3078 4371 7.070821 ACCAGGAGTACTAAATATAACACCAGG 59.929 40.741 0.00 0.00 36.03 4.45
3079 4372 7.070821 CCAGGAGTACTAAATATAACACCAGGT 59.929 40.741 0.00 0.00 28.92 4.00
3080 4373 8.483758 CAGGAGTACTAAATATAACACCAGGTT 58.516 37.037 0.00 0.00 43.62 3.50
3081 4374 8.483758 AGGAGTACTAAATATAACACCAGGTTG 58.516 37.037 0.00 0.00 40.73 3.77
3082 4375 8.480501 GGAGTACTAAATATAACACCAGGTTGA 58.519 37.037 0.00 0.00 40.73 3.18
3083 4376 9.530633 GAGTACTAAATATAACACCAGGTTGAG 57.469 37.037 0.00 0.00 40.73 3.02
3084 4377 7.985752 AGTACTAAATATAACACCAGGTTGAGC 59.014 37.037 0.00 0.00 40.73 4.26
3085 4378 6.717289 ACTAAATATAACACCAGGTTGAGCA 58.283 36.000 0.00 0.00 40.73 4.26
3086 4379 6.823689 ACTAAATATAACACCAGGTTGAGCAG 59.176 38.462 0.00 0.00 40.73 4.24
3087 4380 5.435686 AATATAACACCAGGTTGAGCAGA 57.564 39.130 0.00 0.00 40.73 4.26
3088 4381 2.839486 TAACACCAGGTTGAGCAGAG 57.161 50.000 0.00 0.00 40.73 3.35
3089 4382 1.131638 AACACCAGGTTGAGCAGAGA 58.868 50.000 0.00 0.00 38.60 3.10
3090 4383 0.394565 ACACCAGGTTGAGCAGAGAC 59.605 55.000 0.00 0.00 0.00 3.36
3091 4384 0.683973 CACCAGGTTGAGCAGAGACT 59.316 55.000 0.00 0.00 0.00 3.24
3092 4385 0.683973 ACCAGGTTGAGCAGAGACTG 59.316 55.000 0.00 0.00 34.12 3.51
3093 4386 0.683973 CCAGGTTGAGCAGAGACTGT 59.316 55.000 0.00 0.00 33.43 3.55
3094 4387 1.337635 CCAGGTTGAGCAGAGACTGTC 60.338 57.143 0.00 0.00 33.43 3.51
3095 4388 0.972883 AGGTTGAGCAGAGACTGTCC 59.027 55.000 3.76 0.00 33.43 4.02
3096 4389 0.681733 GGTTGAGCAGAGACTGTCCA 59.318 55.000 3.76 0.00 33.43 4.02
3097 4390 1.070758 GGTTGAGCAGAGACTGTCCAA 59.929 52.381 3.76 0.00 33.43 3.53
3098 4391 2.289945 GGTTGAGCAGAGACTGTCCAAT 60.290 50.000 3.76 0.00 33.43 3.16
3099 4392 3.055819 GGTTGAGCAGAGACTGTCCAATA 60.056 47.826 3.76 0.00 33.43 1.90
3100 4393 4.563580 GGTTGAGCAGAGACTGTCCAATAA 60.564 45.833 3.76 0.00 33.43 1.40
3101 4394 5.181748 GTTGAGCAGAGACTGTCCAATAAT 58.818 41.667 3.76 0.00 33.43 1.28
3102 4395 5.426689 TGAGCAGAGACTGTCCAATAATT 57.573 39.130 3.76 0.00 33.43 1.40
3103 4396 5.809001 TGAGCAGAGACTGTCCAATAATTT 58.191 37.500 3.76 0.00 33.43 1.82
3104 4397 6.946340 TGAGCAGAGACTGTCCAATAATTTA 58.054 36.000 3.76 0.00 33.43 1.40
3105 4398 7.568349 TGAGCAGAGACTGTCCAATAATTTAT 58.432 34.615 3.76 0.00 33.43 1.40
3106 4399 8.049117 TGAGCAGAGACTGTCCAATAATTTATT 58.951 33.333 3.76 0.00 33.43 1.40
3107 4400 9.547753 GAGCAGAGACTGTCCAATAATTTATTA 57.452 33.333 3.76 0.00 33.43 0.98
3108 4401 9.331282 AGCAGAGACTGTCCAATAATTTATTAC 57.669 33.333 3.76 0.00 33.43 1.89
3109 4402 9.109393 GCAGAGACTGTCCAATAATTTATTACA 57.891 33.333 3.76 3.63 33.43 2.41
3111 4404 9.838339 AGAGACTGTCCAATAATTTATTACAGG 57.162 33.333 23.42 13.46 38.30 4.00
3112 4405 8.451908 AGACTGTCCAATAATTTATTACAGGC 57.548 34.615 23.42 22.15 40.58 4.85
3113 4406 8.052748 AGACTGTCCAATAATTTATTACAGGCA 58.947 33.333 25.75 14.98 41.79 4.75
3114 4407 7.996385 ACTGTCCAATAATTTATTACAGGCAC 58.004 34.615 23.42 13.02 38.30 5.01
3115 4408 7.022055 TGTCCAATAATTTATTACAGGCACG 57.978 36.000 1.41 0.00 0.00 5.34
3116 4409 5.912955 GTCCAATAATTTATTACAGGCACGC 59.087 40.000 1.41 0.00 0.00 5.34
3117 4410 5.009210 TCCAATAATTTATTACAGGCACGCC 59.991 40.000 0.00 0.00 0.00 5.68
3118 4411 4.742438 ATAATTTATTACAGGCACGCCG 57.258 40.909 1.61 0.37 41.95 6.46
3119 4412 2.319136 ATTTATTACAGGCACGCCGA 57.681 45.000 1.61 0.00 41.95 5.54
3120 4413 2.319136 TTTATTACAGGCACGCCGAT 57.681 45.000 1.61 0.00 41.95 4.18
3121 4414 3.455990 TTTATTACAGGCACGCCGATA 57.544 42.857 1.61 0.00 41.95 2.92
3122 4415 3.455990 TTATTACAGGCACGCCGATAA 57.544 42.857 1.61 6.02 41.95 1.75
3123 4416 2.319136 ATTACAGGCACGCCGATAAA 57.681 45.000 1.61 0.00 41.95 1.40
3124 4417 2.096220 TTACAGGCACGCCGATAAAA 57.904 45.000 1.61 0.00 41.95 1.52
3125 4418 1.361793 TACAGGCACGCCGATAAAAC 58.638 50.000 1.61 0.00 41.95 2.43
3126 4419 0.604243 ACAGGCACGCCGATAAAACA 60.604 50.000 1.61 0.00 41.95 2.83
3127 4420 0.519519 CAGGCACGCCGATAAAACAA 59.480 50.000 1.61 0.00 41.95 2.83
3128 4421 1.132262 CAGGCACGCCGATAAAACAAT 59.868 47.619 1.61 0.00 41.95 2.71
3129 4422 2.353269 CAGGCACGCCGATAAAACAATA 59.647 45.455 1.61 0.00 41.95 1.90
3130 4423 3.011119 AGGCACGCCGATAAAACAATAA 58.989 40.909 1.61 0.00 41.95 1.40
3131 4424 3.064820 AGGCACGCCGATAAAACAATAAG 59.935 43.478 1.61 0.00 41.95 1.73
3132 4425 3.359654 GCACGCCGATAAAACAATAAGG 58.640 45.455 0.00 0.00 0.00 2.69
3133 4426 3.359654 CACGCCGATAAAACAATAAGGC 58.640 45.455 0.00 0.00 39.68 4.35
3135 4428 2.994849 GCCGATAAAACAATAAGGCGG 58.005 47.619 0.00 0.00 40.38 6.13
3136 4429 2.614983 GCCGATAAAACAATAAGGCGGA 59.385 45.455 0.00 0.00 39.85 5.54
3137 4430 3.252458 GCCGATAAAACAATAAGGCGGAT 59.748 43.478 0.00 0.00 39.85 4.18
3138 4431 4.453136 GCCGATAAAACAATAAGGCGGATA 59.547 41.667 0.00 0.00 39.85 2.59
3139 4432 5.390567 GCCGATAAAACAATAAGGCGGATAG 60.391 44.000 0.00 0.00 39.85 2.08
3140 4433 5.121768 CCGATAAAACAATAAGGCGGATAGG 59.878 44.000 0.00 0.00 39.85 2.57
3141 4434 5.121768 CGATAAAACAATAAGGCGGATAGGG 59.878 44.000 0.00 0.00 0.00 3.53
3142 4435 3.945640 AAACAATAAGGCGGATAGGGT 57.054 42.857 0.00 0.00 0.00 4.34
3143 4436 2.930826 ACAATAAGGCGGATAGGGTG 57.069 50.000 0.00 0.00 0.00 4.61
3144 4437 1.420138 ACAATAAGGCGGATAGGGTGG 59.580 52.381 0.00 0.00 0.00 4.61
3145 4438 0.400594 AATAAGGCGGATAGGGTGGC 59.599 55.000 0.00 0.00 0.00 5.01
3146 4439 0.766674 ATAAGGCGGATAGGGTGGCA 60.767 55.000 0.00 0.00 0.00 4.92
3147 4440 0.983905 TAAGGCGGATAGGGTGGCAA 60.984 55.000 0.00 0.00 0.00 4.52
3148 4441 1.858739 AAGGCGGATAGGGTGGCAAA 61.859 55.000 0.00 0.00 0.00 3.68
3149 4442 2.119029 GGCGGATAGGGTGGCAAAC 61.119 63.158 0.00 0.00 0.00 2.93
3150 4443 1.077716 GCGGATAGGGTGGCAAACT 60.078 57.895 0.00 0.00 0.00 2.66
3151 4444 0.679960 GCGGATAGGGTGGCAAACTT 60.680 55.000 0.00 0.00 0.00 2.66
3152 4445 1.379527 CGGATAGGGTGGCAAACTTC 58.620 55.000 0.00 0.00 0.00 3.01
3153 4446 1.065418 CGGATAGGGTGGCAAACTTCT 60.065 52.381 0.00 0.00 0.00 2.85
3154 4447 2.169769 CGGATAGGGTGGCAAACTTCTA 59.830 50.000 0.00 0.00 0.00 2.10
3155 4448 3.370103 CGGATAGGGTGGCAAACTTCTAA 60.370 47.826 0.00 0.00 0.00 2.10
3156 4449 3.945921 GGATAGGGTGGCAAACTTCTAAC 59.054 47.826 0.00 0.00 0.00 2.34
3157 4450 4.324331 GGATAGGGTGGCAAACTTCTAACT 60.324 45.833 0.00 0.00 0.00 2.24
3158 4451 3.141767 AGGGTGGCAAACTTCTAACTC 57.858 47.619 0.00 0.00 0.00 3.01
3159 4452 2.441750 AGGGTGGCAAACTTCTAACTCA 59.558 45.455 0.00 0.00 0.00 3.41
3160 4453 2.552743 GGGTGGCAAACTTCTAACTCAC 59.447 50.000 0.00 0.00 0.00 3.51
3161 4454 2.223377 GGTGGCAAACTTCTAACTCACG 59.777 50.000 0.00 0.00 0.00 4.35
3162 4455 3.128349 GTGGCAAACTTCTAACTCACGA 58.872 45.455 0.00 0.00 0.00 4.35
3163 4456 3.746492 GTGGCAAACTTCTAACTCACGAT 59.254 43.478 0.00 0.00 0.00 3.73
3164 4457 4.927425 GTGGCAAACTTCTAACTCACGATA 59.073 41.667 0.00 0.00 0.00 2.92
3165 4458 5.407387 GTGGCAAACTTCTAACTCACGATAA 59.593 40.000 0.00 0.00 0.00 1.75
3166 4459 6.092259 GTGGCAAACTTCTAACTCACGATAAT 59.908 38.462 0.00 0.00 0.00 1.28
3167 4460 7.277098 GTGGCAAACTTCTAACTCACGATAATA 59.723 37.037 0.00 0.00 0.00 0.98
3168 4461 7.820386 TGGCAAACTTCTAACTCACGATAATAA 59.180 33.333 0.00 0.00 0.00 1.40
3169 4462 8.114905 GGCAAACTTCTAACTCACGATAATAAC 58.885 37.037 0.00 0.00 0.00 1.89
3170 4463 7.839837 GCAAACTTCTAACTCACGATAATAACG 59.160 37.037 0.00 0.00 0.00 3.18
3171 4464 7.982371 AACTTCTAACTCACGATAATAACGG 57.018 36.000 0.00 0.00 34.93 4.44
3172 4465 7.093322 ACTTCTAACTCACGATAATAACGGT 57.907 36.000 0.00 0.00 34.93 4.83
3173 4466 6.971184 ACTTCTAACTCACGATAATAACGGTG 59.029 38.462 0.00 0.00 34.93 4.94
3174 4467 5.824429 TCTAACTCACGATAATAACGGTGG 58.176 41.667 0.00 0.00 34.93 4.61
3175 4468 4.460948 AACTCACGATAATAACGGTGGT 57.539 40.909 0.00 0.00 34.93 4.16
3176 4469 3.777478 ACTCACGATAATAACGGTGGTG 58.223 45.455 0.00 0.00 34.93 4.17
3177 4470 2.538449 CTCACGATAATAACGGTGGTGC 59.462 50.000 0.00 0.00 34.93 5.01
3178 4471 2.094130 TCACGATAATAACGGTGGTGCA 60.094 45.455 0.00 0.00 34.93 4.57
3179 4472 2.673862 CACGATAATAACGGTGGTGCAA 59.326 45.455 0.00 0.00 34.93 4.08
3180 4473 3.125487 CACGATAATAACGGTGGTGCAAA 59.875 43.478 0.00 0.00 34.93 3.68
3181 4474 3.942748 ACGATAATAACGGTGGTGCAAAT 59.057 39.130 0.00 0.00 34.93 2.32
3182 4475 5.006844 CACGATAATAACGGTGGTGCAAATA 59.993 40.000 0.00 0.00 34.93 1.40
3183 4476 5.761234 ACGATAATAACGGTGGTGCAAATAT 59.239 36.000 0.00 0.00 34.93 1.28
3184 4477 6.073440 ACGATAATAACGGTGGTGCAAATATC 60.073 38.462 0.00 0.00 34.93 1.63
3185 4478 6.073494 CGATAATAACGGTGGTGCAAATATCA 60.073 38.462 0.00 0.00 0.00 2.15
3186 4479 7.360861 CGATAATAACGGTGGTGCAAATATCAT 60.361 37.037 0.00 0.00 0.00 2.45
3187 4480 5.689383 ATAACGGTGGTGCAAATATCATC 57.311 39.130 0.00 0.00 0.00 2.92
3188 4481 1.939934 ACGGTGGTGCAAATATCATCG 59.060 47.619 0.00 0.00 39.35 3.84
3189 4482 1.334059 CGGTGGTGCAAATATCATCGC 60.334 52.381 0.00 0.00 0.00 4.58
3190 4483 1.334059 GGTGGTGCAAATATCATCGCG 60.334 52.381 0.00 0.00 0.00 5.87
3191 4484 1.597195 GTGGTGCAAATATCATCGCGA 59.403 47.619 13.09 13.09 0.00 5.87
3192 4485 2.031560 GTGGTGCAAATATCATCGCGAA 59.968 45.455 15.24 0.00 0.00 4.70
3193 4486 2.287644 TGGTGCAAATATCATCGCGAAG 59.712 45.455 15.24 9.61 0.00 3.79
3210 4503 3.642705 CGAAGCGAGTGATATGATTCCA 58.357 45.455 0.00 0.00 0.00 3.53
3211 4504 3.672397 CGAAGCGAGTGATATGATTCCAG 59.328 47.826 0.00 0.00 0.00 3.86
3212 4505 4.557496 CGAAGCGAGTGATATGATTCCAGA 60.557 45.833 0.00 0.00 0.00 3.86
3213 4506 4.944619 AGCGAGTGATATGATTCCAGAA 57.055 40.909 0.00 0.00 0.00 3.02
3214 4507 4.880759 AGCGAGTGATATGATTCCAGAAG 58.119 43.478 0.00 0.00 0.00 2.85
3215 4508 4.586421 AGCGAGTGATATGATTCCAGAAGA 59.414 41.667 0.00 0.00 0.00 2.87
3216 4509 4.683781 GCGAGTGATATGATTCCAGAAGAC 59.316 45.833 0.00 0.00 0.00 3.01
3217 4510 5.508825 GCGAGTGATATGATTCCAGAAGACT 60.509 44.000 0.00 0.00 0.00 3.24
3218 4511 6.294231 GCGAGTGATATGATTCCAGAAGACTA 60.294 42.308 0.00 0.00 0.00 2.59
3219 4512 7.081349 CGAGTGATATGATTCCAGAAGACTAC 58.919 42.308 0.00 0.00 0.00 2.73
3220 4513 7.255277 CGAGTGATATGATTCCAGAAGACTACA 60.255 40.741 0.00 0.00 0.00 2.74
3221 4514 8.311395 AGTGATATGATTCCAGAAGACTACAA 57.689 34.615 0.00 0.00 0.00 2.41
3222 4515 8.200792 AGTGATATGATTCCAGAAGACTACAAC 58.799 37.037 0.00 0.00 0.00 3.32
3223 4516 8.200792 GTGATATGATTCCAGAAGACTACAACT 58.799 37.037 0.00 0.00 0.00 3.16
3224 4517 8.417106 TGATATGATTCCAGAAGACTACAACTC 58.583 37.037 0.00 0.00 0.00 3.01
3225 4518 6.611613 ATGATTCCAGAAGACTACAACTCA 57.388 37.500 0.00 0.00 0.00 3.41
3226 4519 6.611613 TGATTCCAGAAGACTACAACTCAT 57.388 37.500 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.676216 GGATGCCGTCCGGTTTTT 58.324 55.556 7.66 0.00 37.23 1.94
13 14 1.464997 GAAAAGTGAGTGGATGCCGTC 59.535 52.381 0.00 0.00 0.00 4.79
14 15 1.202758 TGAAAAGTGAGTGGATGCCGT 60.203 47.619 0.00 0.00 0.00 5.68
15 16 1.466167 CTGAAAAGTGAGTGGATGCCG 59.534 52.381 0.00 0.00 0.00 5.69
16 17 1.200948 GCTGAAAAGTGAGTGGATGCC 59.799 52.381 0.00 0.00 0.00 4.40
17 18 2.095364 CAGCTGAAAAGTGAGTGGATGC 60.095 50.000 8.42 0.00 0.00 3.91
18 19 3.058432 CACAGCTGAAAAGTGAGTGGATG 60.058 47.826 23.35 0.00 35.33 3.51
19 20 3.144506 CACAGCTGAAAAGTGAGTGGAT 58.855 45.455 23.35 0.00 35.33 3.41
20 21 2.092968 ACACAGCTGAAAAGTGAGTGGA 60.093 45.455 23.35 0.00 37.05 4.02
21 22 2.292267 ACACAGCTGAAAAGTGAGTGG 58.708 47.619 23.35 0.00 37.05 4.00
22 23 5.065218 ACTTAACACAGCTGAAAAGTGAGTG 59.935 40.000 23.35 7.20 37.05 3.51
23 24 5.186198 ACTTAACACAGCTGAAAAGTGAGT 58.814 37.500 23.35 15.69 37.05 3.41
24 25 5.741388 ACTTAACACAGCTGAAAAGTGAG 57.259 39.130 23.35 15.16 37.05 3.51
25 26 5.065988 GGAACTTAACACAGCTGAAAAGTGA 59.934 40.000 23.35 3.52 37.05 3.41
48 49 2.292828 ACCCTGTTGAATTGGAGTGG 57.707 50.000 0.00 0.00 0.00 4.00
77 78 3.307059 GCAGTCCTGAACTTCATGGTAGT 60.307 47.826 0.00 0.00 35.45 2.73
81 82 2.082231 CAGCAGTCCTGAACTTCATGG 58.918 52.381 0.00 0.00 44.64 3.66
84 85 0.250467 GCCAGCAGTCCTGAACTTCA 60.250 55.000 0.00 0.00 44.64 3.02
87 88 0.035630 GATGCCAGCAGTCCTGAACT 60.036 55.000 0.00 0.00 44.64 3.01
88 89 0.035630 AGATGCCAGCAGTCCTGAAC 60.036 55.000 0.00 0.00 44.64 3.18
90 91 1.600638 CAGATGCCAGCAGTCCTGA 59.399 57.895 11.65 0.00 44.64 3.86
91 92 2.113433 GCAGATGCCAGCAGTCCTG 61.113 63.158 12.36 12.36 41.41 3.86
110 143 0.468029 ACAACTTGCCAGGGACCAAG 60.468 55.000 4.23 4.23 43.05 3.61
111 144 0.467290 GACAACTTGCCAGGGACCAA 60.467 55.000 0.00 0.00 0.00 3.67
113 146 1.966451 CGACAACTTGCCAGGGACC 60.966 63.158 0.00 0.00 0.00 4.46
131 164 2.846371 GTGTGCCACCATCTCTGAC 58.154 57.895 0.00 0.00 0.00 3.51
416 458 4.394712 GGACCTGGTCTGGCCGTG 62.395 72.222 25.01 0.00 41.21 4.94
481 523 2.262292 CAACCATTTGCAGCCCCG 59.738 61.111 0.00 0.00 0.00 5.73
489 531 1.374505 CAAGGGCGGCAACCATTTG 60.375 57.895 12.47 1.47 29.48 2.32
512 554 8.085296 AGATCAATCTAGGTCGATTCACAATAC 58.915 37.037 0.00 0.00 34.85 1.89
513 555 8.084684 CAGATCAATCTAGGTCGATTCACAATA 58.915 37.037 0.00 0.00 34.85 1.90
514 556 6.927936 CAGATCAATCTAGGTCGATTCACAAT 59.072 38.462 0.00 0.00 34.85 2.71
515 557 6.096846 TCAGATCAATCTAGGTCGATTCACAA 59.903 38.462 0.00 0.00 34.85 3.33
525 603 8.954834 ACTATCAGATTCAGATCAATCTAGGT 57.045 34.615 7.72 3.47 40.52 3.08
527 605 7.697710 GCGACTATCAGATTCAGATCAATCTAG 59.302 40.741 7.72 5.62 40.52 2.43
610 698 0.387239 GTCGGTGATGCAAAACTGGC 60.387 55.000 10.20 5.63 0.00 4.85
653 1637 2.183679 CTTACTTGACTCCTGGAGGCT 58.816 52.381 28.95 12.79 38.75 4.58
654 1638 1.406205 GCTTACTTGACTCCTGGAGGC 60.406 57.143 26.56 24.95 38.37 4.70
655 1639 1.902508 TGCTTACTTGACTCCTGGAGG 59.097 52.381 26.56 11.85 33.35 4.30
656 1640 2.354203 GGTGCTTACTTGACTCCTGGAG 60.354 54.545 22.00 22.00 35.52 3.86
672 1656 0.617820 ATAGACCGACAAGGGGTGCT 60.618 55.000 0.00 0.00 46.96 4.40
681 1665 1.663379 CGGCACCAGATAGACCGACA 61.663 60.000 0.00 0.00 46.71 4.35
686 1670 1.878522 CGCACGGCACCAGATAGAC 60.879 63.158 0.00 0.00 0.00 2.59
899 2097 1.693083 GGCGTGCGTGGCTAGTTTAG 61.693 60.000 0.00 0.00 0.00 1.85
924 2126 1.078143 GAGGGAAGCAAGGCGATGT 60.078 57.895 0.00 0.00 0.00 3.06
1123 2349 1.378250 CGTACACGACCCCTCTCCT 60.378 63.158 0.00 0.00 43.02 3.69
1676 2938 2.865598 ATCCTCTCCTCATGCGCCG 61.866 63.158 4.18 0.00 0.00 6.46
1683 2945 0.560193 CCTCCCTCATCCTCTCCTCA 59.440 60.000 0.00 0.00 0.00 3.86
1707 2969 3.222855 CCGATCCGCTCCAGCTCT 61.223 66.667 0.00 0.00 39.32 4.09
1950 3212 3.849953 GCGATGAACGACGGCCAC 61.850 66.667 2.24 0.00 45.77 5.01
2297 3564 2.353030 GCGTTGACGTTTGGTGGC 60.353 61.111 5.36 0.00 42.22 5.01
2669 3959 0.108138 CCACACCGGGATCTCTGAAC 60.108 60.000 6.32 0.00 0.00 3.18
2674 3964 2.584608 CCACCACACCGGGATCTC 59.415 66.667 6.32 0.00 40.22 2.75
2725 4015 1.734465 GAGGAAAGAACGCATCAGGTG 59.266 52.381 0.00 0.00 0.00 4.00
2785 4075 1.180029 GTCATGCATTCTGCCTTGGT 58.820 50.000 0.00 0.00 44.23 3.67
2786 4076 0.458669 GGTCATGCATTCTGCCTTGG 59.541 55.000 0.00 0.00 44.23 3.61
2787 4077 0.099968 CGGTCATGCATTCTGCCTTG 59.900 55.000 0.00 0.00 44.23 3.61
2795 4086 2.257286 GAAGCGCACGGTCATGCATT 62.257 55.000 11.47 0.00 46.47 3.56
2799 4090 2.108514 ATGGAAGCGCACGGTCATG 61.109 57.895 11.47 0.00 0.00 3.07
2807 4098 0.039256 GCAGAAAACATGGAAGCGCA 60.039 50.000 11.47 0.00 0.00 6.09
2828 4119 0.871057 GGCTTGTGAACTGAGACAGC 59.129 55.000 0.00 0.00 34.37 4.40
2862 4153 4.440802 CGTCTAGGATTCCAGGTTCTTCAG 60.441 50.000 5.29 0.00 0.00 3.02
2873 4165 1.249407 AGGATCGCGTCTAGGATTCC 58.751 55.000 5.77 0.00 0.00 3.01
2883 4175 3.320673 AAAGAGAGAAAAGGATCGCGT 57.679 42.857 5.77 0.00 0.00 6.01
2891 4183 8.484641 AAAAAGGCAAGAAAAAGAGAGAAAAG 57.515 30.769 0.00 0.00 0.00 2.27
2892 4184 7.549134 GGAAAAAGGCAAGAAAAAGAGAGAAAA 59.451 33.333 0.00 0.00 0.00 2.29
2909 4202 1.970640 ACAGGAACCATGGAAAAAGGC 59.029 47.619 21.47 0.00 0.00 4.35
2932 4225 1.011333 AAACCGGTCGTGACAAACTG 58.989 50.000 8.04 0.00 0.00 3.16
2937 4230 1.735386 TTGAAAAACCGGTCGTGACA 58.265 45.000 8.04 2.16 0.00 3.58
2938 4231 4.471157 TTATTGAAAAACCGGTCGTGAC 57.529 40.909 8.04 0.00 0.00 3.67
2939 4232 5.496133 TTTTATTGAAAAACCGGTCGTGA 57.504 34.783 8.04 0.00 31.51 4.35
2940 4233 7.854934 TTATTTTATTGAAAAACCGGTCGTG 57.145 32.000 8.04 0.00 38.04 4.35
2958 4251 9.942526 AGGGATTGGTCTCTCAATAATTATTTT 57.057 29.630 8.01 0.00 37.47 1.82
2959 4252 9.942526 AAGGGATTGGTCTCTCAATAATTATTT 57.057 29.630 8.01 0.00 37.47 1.40
2960 4253 9.942526 AAAGGGATTGGTCTCTCAATAATTATT 57.057 29.630 4.81 4.81 37.47 1.40
2961 4254 9.942526 AAAAGGGATTGGTCTCTCAATAATTAT 57.057 29.630 0.00 0.00 37.47 1.28
2963 4256 9.190317 GTAAAAGGGATTGGTCTCTCAATAATT 57.810 33.333 0.00 0.00 37.47 1.40
2964 4257 7.499232 CGTAAAAGGGATTGGTCTCTCAATAAT 59.501 37.037 0.00 0.00 37.47 1.28
2965 4258 6.821665 CGTAAAAGGGATTGGTCTCTCAATAA 59.178 38.462 0.00 0.00 37.47 1.40
2966 4259 6.346096 CGTAAAAGGGATTGGTCTCTCAATA 58.654 40.000 0.00 0.00 37.47 1.90
2967 4260 5.186198 CGTAAAAGGGATTGGTCTCTCAAT 58.814 41.667 0.00 0.00 39.76 2.57
2968 4261 4.564821 CCGTAAAAGGGATTGGTCTCTCAA 60.565 45.833 0.00 0.00 32.69 3.02
2969 4262 3.055385 CCGTAAAAGGGATTGGTCTCTCA 60.055 47.826 0.00 0.00 32.69 3.27
2970 4263 3.197116 TCCGTAAAAGGGATTGGTCTCTC 59.803 47.826 0.00 0.00 32.69 3.20
2971 4264 3.055312 GTCCGTAAAAGGGATTGGTCTCT 60.055 47.826 0.00 0.00 36.49 3.10
2972 4265 3.268330 GTCCGTAAAAGGGATTGGTCTC 58.732 50.000 0.00 0.00 34.33 3.36
2973 4266 2.026542 GGTCCGTAAAAGGGATTGGTCT 60.027 50.000 0.00 0.00 34.33 3.85
2974 4267 2.290450 TGGTCCGTAAAAGGGATTGGTC 60.290 50.000 0.00 0.00 34.33 4.02
2975 4268 1.706305 TGGTCCGTAAAAGGGATTGGT 59.294 47.619 0.00 0.00 34.33 3.67
2976 4269 2.365582 CTGGTCCGTAAAAGGGATTGG 58.634 52.381 0.00 0.00 34.33 3.16
2977 4270 1.743394 GCTGGTCCGTAAAAGGGATTG 59.257 52.381 0.00 0.00 34.33 2.67
2978 4271 1.677820 CGCTGGTCCGTAAAAGGGATT 60.678 52.381 0.00 0.00 34.33 3.01
2979 4272 0.107848 CGCTGGTCCGTAAAAGGGAT 60.108 55.000 0.00 0.00 34.33 3.85
2980 4273 1.186917 TCGCTGGTCCGTAAAAGGGA 61.187 55.000 0.00 0.00 0.00 4.20
2981 4274 0.320946 TTCGCTGGTCCGTAAAAGGG 60.321 55.000 0.00 0.00 0.00 3.95
2982 4275 1.076332 CTTCGCTGGTCCGTAAAAGG 58.924 55.000 0.00 0.00 0.00 3.11
2983 4276 2.074547 TCTTCGCTGGTCCGTAAAAG 57.925 50.000 0.00 0.00 0.00 2.27
2984 4277 2.036217 TCTTCTTCGCTGGTCCGTAAAA 59.964 45.455 0.00 0.00 0.00 1.52
2985 4278 1.614903 TCTTCTTCGCTGGTCCGTAAA 59.385 47.619 0.00 0.00 0.00 2.01
2986 4279 1.250328 TCTTCTTCGCTGGTCCGTAA 58.750 50.000 0.00 0.00 0.00 3.18
2987 4280 1.250328 TTCTTCTTCGCTGGTCCGTA 58.750 50.000 0.00 0.00 0.00 4.02
2988 4281 0.608640 ATTCTTCTTCGCTGGTCCGT 59.391 50.000 0.00 0.00 0.00 4.69
2989 4282 1.661112 GAATTCTTCTTCGCTGGTCCG 59.339 52.381 0.00 0.00 0.00 4.79
2990 4283 2.010497 GGAATTCTTCTTCGCTGGTCC 58.990 52.381 5.23 0.00 0.00 4.46
2991 4284 2.979240 AGGAATTCTTCTTCGCTGGTC 58.021 47.619 5.23 0.00 0.00 4.02
2992 4285 3.339141 GAAGGAATTCTTCTTCGCTGGT 58.661 45.455 5.23 0.00 46.30 4.00
3002 4295 7.554959 TGTCTACCAGTAAGAAGGAATTCTT 57.445 36.000 5.23 8.20 43.17 2.52
3003 4296 7.554959 TTGTCTACCAGTAAGAAGGAATTCT 57.445 36.000 5.23 0.00 0.00 2.40
3004 4297 9.886132 TTATTGTCTACCAGTAAGAAGGAATTC 57.114 33.333 0.00 0.00 0.00 2.17
3007 4300 9.268282 AGATTATTGTCTACCAGTAAGAAGGAA 57.732 33.333 0.00 0.00 29.94 3.36
3008 4301 8.840200 AGATTATTGTCTACCAGTAAGAAGGA 57.160 34.615 0.00 0.00 29.94 3.36
3009 4302 9.319143 CAAGATTATTGTCTACCAGTAAGAAGG 57.681 37.037 0.00 0.00 29.94 3.46
3010 4303 9.319143 CCAAGATTATTGTCTACCAGTAAGAAG 57.681 37.037 0.00 0.00 29.94 2.85
3011 4304 8.822805 ACCAAGATTATTGTCTACCAGTAAGAA 58.177 33.333 0.00 0.00 29.94 2.52
3012 4305 8.375493 ACCAAGATTATTGTCTACCAGTAAGA 57.625 34.615 0.00 0.00 29.94 2.10
3013 4306 8.258007 TGACCAAGATTATTGTCTACCAGTAAG 58.742 37.037 0.00 0.00 29.94 2.34
3014 4307 8.038944 GTGACCAAGATTATTGTCTACCAGTAA 58.961 37.037 0.00 0.00 30.85 2.24
3015 4308 7.179516 TGTGACCAAGATTATTGTCTACCAGTA 59.820 37.037 0.00 0.00 0.00 2.74
3016 4309 6.013725 TGTGACCAAGATTATTGTCTACCAGT 60.014 38.462 0.00 0.00 0.00 4.00
3017 4310 6.406370 TGTGACCAAGATTATTGTCTACCAG 58.594 40.000 0.00 0.00 0.00 4.00
3018 4311 6.212589 TCTGTGACCAAGATTATTGTCTACCA 59.787 38.462 0.00 0.00 0.00 3.25
3019 4312 6.640518 TCTGTGACCAAGATTATTGTCTACC 58.359 40.000 0.00 0.00 0.00 3.18
3020 4313 8.547967 TTTCTGTGACCAAGATTATTGTCTAC 57.452 34.615 0.00 0.00 0.00 2.59
3021 4314 9.567776 TTTTTCTGTGACCAAGATTATTGTCTA 57.432 29.630 0.00 0.00 0.00 2.59
3022 4315 8.463930 TTTTTCTGTGACCAAGATTATTGTCT 57.536 30.769 0.00 0.00 0.00 3.41
3050 4343 9.664777 TGGTGTTATATTTAGTACTCCTGGTAT 57.335 33.333 0.00 0.00 32.56 2.73
3051 4344 9.139734 CTGGTGTTATATTTAGTACTCCTGGTA 57.860 37.037 0.00 0.00 0.00 3.25
3052 4345 7.070821 CCTGGTGTTATATTTAGTACTCCTGGT 59.929 40.741 0.00 0.00 37.93 4.00
3053 4346 7.070821 ACCTGGTGTTATATTTAGTACTCCTGG 59.929 40.741 0.00 6.48 43.27 4.45
3054 4347 8.019656 ACCTGGTGTTATATTTAGTACTCCTG 57.980 38.462 0.00 0.00 0.00 3.86
3055 4348 8.483758 CAACCTGGTGTTATATTTAGTACTCCT 58.516 37.037 0.00 0.00 34.69 3.69
3056 4349 8.480501 TCAACCTGGTGTTATATTTAGTACTCC 58.519 37.037 0.00 0.00 34.69 3.85
3057 4350 9.530633 CTCAACCTGGTGTTATATTTAGTACTC 57.469 37.037 0.00 0.00 34.69 2.59
3058 4351 7.985752 GCTCAACCTGGTGTTATATTTAGTACT 59.014 37.037 0.00 0.00 34.69 2.73
3059 4352 7.767198 TGCTCAACCTGGTGTTATATTTAGTAC 59.233 37.037 0.00 0.00 34.69 2.73
3060 4353 7.853299 TGCTCAACCTGGTGTTATATTTAGTA 58.147 34.615 0.00 0.00 34.69 1.82
3061 4354 6.717289 TGCTCAACCTGGTGTTATATTTAGT 58.283 36.000 0.00 0.00 34.69 2.24
3062 4355 7.047891 TCTGCTCAACCTGGTGTTATATTTAG 58.952 38.462 0.00 0.00 34.69 1.85
3063 4356 6.953101 TCTGCTCAACCTGGTGTTATATTTA 58.047 36.000 0.00 0.00 34.69 1.40
3064 4357 5.815581 TCTGCTCAACCTGGTGTTATATTT 58.184 37.500 0.00 0.00 34.69 1.40
3065 4358 5.189736 TCTCTGCTCAACCTGGTGTTATATT 59.810 40.000 0.00 0.00 34.69 1.28
3066 4359 4.716784 TCTCTGCTCAACCTGGTGTTATAT 59.283 41.667 0.00 0.00 34.69 0.86
3067 4360 4.081642 GTCTCTGCTCAACCTGGTGTTATA 60.082 45.833 0.00 0.00 34.69 0.98
3068 4361 2.906389 TCTCTGCTCAACCTGGTGTTAT 59.094 45.455 0.00 0.00 34.69 1.89
3069 4362 2.037251 GTCTCTGCTCAACCTGGTGTTA 59.963 50.000 0.00 0.00 34.69 2.41
3070 4363 1.131638 TCTCTGCTCAACCTGGTGTT 58.868 50.000 0.00 0.00 37.80 3.32
3071 4364 0.394565 GTCTCTGCTCAACCTGGTGT 59.605 55.000 0.00 0.00 0.00 4.16
3072 4365 0.683973 AGTCTCTGCTCAACCTGGTG 59.316 55.000 0.00 0.00 0.00 4.17
3073 4366 0.683973 CAGTCTCTGCTCAACCTGGT 59.316 55.000 0.00 0.00 0.00 4.00
3074 4367 0.683973 ACAGTCTCTGCTCAACCTGG 59.316 55.000 0.00 0.00 34.37 4.45
3075 4368 1.337635 GGACAGTCTCTGCTCAACCTG 60.338 57.143 0.00 0.00 34.37 4.00
3076 4369 0.972883 GGACAGTCTCTGCTCAACCT 59.027 55.000 0.00 0.00 34.37 3.50
3077 4370 0.681733 TGGACAGTCTCTGCTCAACC 59.318 55.000 0.00 0.00 34.37 3.77
3078 4371 2.533266 TTGGACAGTCTCTGCTCAAC 57.467 50.000 0.00 0.00 34.37 3.18
3079 4372 4.890158 TTATTGGACAGTCTCTGCTCAA 57.110 40.909 0.00 0.00 34.37 3.02
3080 4373 5.426689 AATTATTGGACAGTCTCTGCTCA 57.573 39.130 0.00 0.00 34.37 4.26
3081 4374 8.443953 AATAAATTATTGGACAGTCTCTGCTC 57.556 34.615 0.00 0.00 34.37 4.26
3082 4375 9.331282 GTAATAAATTATTGGACAGTCTCTGCT 57.669 33.333 8.39 0.00 34.37 4.24
3083 4376 9.109393 TGTAATAAATTATTGGACAGTCTCTGC 57.891 33.333 8.39 0.00 34.37 4.26
3085 4378 9.838339 CCTGTAATAAATTATTGGACAGTCTCT 57.162 33.333 19.28 0.00 34.90 3.10
3086 4379 8.560374 GCCTGTAATAAATTATTGGACAGTCTC 58.440 37.037 19.28 10.01 34.90 3.36
3087 4380 8.052748 TGCCTGTAATAAATTATTGGACAGTCT 58.947 33.333 19.28 0.00 34.90 3.24
3088 4381 8.129211 GTGCCTGTAATAAATTATTGGACAGTC 58.871 37.037 19.28 12.22 34.90 3.51
3089 4382 7.201696 CGTGCCTGTAATAAATTATTGGACAGT 60.202 37.037 19.28 0.00 34.90 3.55
3090 4383 7.132213 CGTGCCTGTAATAAATTATTGGACAG 58.868 38.462 16.21 16.21 35.78 3.51
3091 4384 6.459024 GCGTGCCTGTAATAAATTATTGGACA 60.459 38.462 8.39 5.12 0.00 4.02
3092 4385 5.912955 GCGTGCCTGTAATAAATTATTGGAC 59.087 40.000 8.39 2.74 0.00 4.02
3093 4386 5.009210 GGCGTGCCTGTAATAAATTATTGGA 59.991 40.000 8.39 0.00 0.00 3.53
3094 4387 5.219633 GGCGTGCCTGTAATAAATTATTGG 58.780 41.667 8.39 2.92 0.00 3.16
3095 4388 4.909305 CGGCGTGCCTGTAATAAATTATTG 59.091 41.667 9.55 0.00 0.00 1.90
3096 4389 4.817464 TCGGCGTGCCTGTAATAAATTATT 59.183 37.500 6.85 3.56 0.00 1.40
3097 4390 4.382291 TCGGCGTGCCTGTAATAAATTAT 58.618 39.130 6.85 0.00 0.00 1.28
3098 4391 3.794717 TCGGCGTGCCTGTAATAAATTA 58.205 40.909 6.85 0.00 0.00 1.40
3099 4392 2.634600 TCGGCGTGCCTGTAATAAATT 58.365 42.857 6.85 0.00 0.00 1.82
3100 4393 2.319136 TCGGCGTGCCTGTAATAAAT 57.681 45.000 6.85 0.00 0.00 1.40
3101 4394 2.319136 ATCGGCGTGCCTGTAATAAA 57.681 45.000 6.85 0.00 0.00 1.40
3102 4395 3.455990 TTATCGGCGTGCCTGTAATAA 57.544 42.857 6.85 5.31 0.00 1.40
3103 4396 3.455990 TTTATCGGCGTGCCTGTAATA 57.544 42.857 6.85 0.00 0.00 0.98
3104 4397 2.319136 TTTATCGGCGTGCCTGTAAT 57.681 45.000 6.85 0.34 0.00 1.89
3105 4398 1.733360 GTTTTATCGGCGTGCCTGTAA 59.267 47.619 6.85 5.17 0.00 2.41
3106 4399 1.337917 TGTTTTATCGGCGTGCCTGTA 60.338 47.619 6.85 0.00 0.00 2.74
3107 4400 0.604243 TGTTTTATCGGCGTGCCTGT 60.604 50.000 6.85 0.00 0.00 4.00
3108 4401 0.519519 TTGTTTTATCGGCGTGCCTG 59.480 50.000 6.85 2.94 0.00 4.85
3109 4402 1.459450 ATTGTTTTATCGGCGTGCCT 58.541 45.000 6.85 0.00 0.00 4.75
3110 4403 3.359654 CTTATTGTTTTATCGGCGTGCC 58.640 45.455 6.85 0.00 0.00 5.01
3111 4404 3.359654 CCTTATTGTTTTATCGGCGTGC 58.640 45.455 6.85 0.00 0.00 5.34
3112 4405 3.359654 GCCTTATTGTTTTATCGGCGTG 58.640 45.455 6.85 0.00 0.00 5.34
3113 4406 3.685836 GCCTTATTGTTTTATCGGCGT 57.314 42.857 6.85 0.00 0.00 5.68
3115 4408 2.614983 TCCGCCTTATTGTTTTATCGGC 59.385 45.455 0.00 0.00 35.98 5.54
3116 4409 5.121768 CCTATCCGCCTTATTGTTTTATCGG 59.878 44.000 0.00 0.00 37.21 4.18
3117 4410 5.121768 CCCTATCCGCCTTATTGTTTTATCG 59.878 44.000 0.00 0.00 0.00 2.92
3118 4411 6.002082 ACCCTATCCGCCTTATTGTTTTATC 58.998 40.000 0.00 0.00 0.00 1.75
3119 4412 5.768164 CACCCTATCCGCCTTATTGTTTTAT 59.232 40.000 0.00 0.00 0.00 1.40
3120 4413 5.127491 CACCCTATCCGCCTTATTGTTTTA 58.873 41.667 0.00 0.00 0.00 1.52
3121 4414 3.951680 CACCCTATCCGCCTTATTGTTTT 59.048 43.478 0.00 0.00 0.00 2.43
3122 4415 3.551846 CACCCTATCCGCCTTATTGTTT 58.448 45.455 0.00 0.00 0.00 2.83
3123 4416 2.158667 CCACCCTATCCGCCTTATTGTT 60.159 50.000 0.00 0.00 0.00 2.83
3124 4417 1.420138 CCACCCTATCCGCCTTATTGT 59.580 52.381 0.00 0.00 0.00 2.71
3125 4418 1.882352 GCCACCCTATCCGCCTTATTG 60.882 57.143 0.00 0.00 0.00 1.90
3126 4419 0.400594 GCCACCCTATCCGCCTTATT 59.599 55.000 0.00 0.00 0.00 1.40
3127 4420 0.766674 TGCCACCCTATCCGCCTTAT 60.767 55.000 0.00 0.00 0.00 1.73
3128 4421 0.983905 TTGCCACCCTATCCGCCTTA 60.984 55.000 0.00 0.00 0.00 2.69
3129 4422 1.858739 TTTGCCACCCTATCCGCCTT 61.859 55.000 0.00 0.00 0.00 4.35
3130 4423 2.305607 TTTGCCACCCTATCCGCCT 61.306 57.895 0.00 0.00 0.00 5.52
3131 4424 2.119029 GTTTGCCACCCTATCCGCC 61.119 63.158 0.00 0.00 0.00 6.13
3132 4425 0.679960 AAGTTTGCCACCCTATCCGC 60.680 55.000 0.00 0.00 0.00 5.54
3133 4426 1.065418 AGAAGTTTGCCACCCTATCCG 60.065 52.381 0.00 0.00 0.00 4.18
3134 4427 2.808906 AGAAGTTTGCCACCCTATCC 57.191 50.000 0.00 0.00 0.00 2.59
3135 4428 4.844884 AGTTAGAAGTTTGCCACCCTATC 58.155 43.478 0.00 0.00 0.00 2.08
3136 4429 4.288626 TGAGTTAGAAGTTTGCCACCCTAT 59.711 41.667 0.00 0.00 0.00 2.57
3137 4430 3.649023 TGAGTTAGAAGTTTGCCACCCTA 59.351 43.478 0.00 0.00 0.00 3.53
3138 4431 2.441750 TGAGTTAGAAGTTTGCCACCCT 59.558 45.455 0.00 0.00 0.00 4.34
3139 4432 2.552743 GTGAGTTAGAAGTTTGCCACCC 59.447 50.000 0.00 0.00 0.00 4.61
3140 4433 2.223377 CGTGAGTTAGAAGTTTGCCACC 59.777 50.000 0.00 0.00 0.00 4.61
3141 4434 3.128349 TCGTGAGTTAGAAGTTTGCCAC 58.872 45.455 0.00 0.00 0.00 5.01
3142 4435 3.462483 TCGTGAGTTAGAAGTTTGCCA 57.538 42.857 0.00 0.00 0.00 4.92
3143 4436 6.663944 ATTATCGTGAGTTAGAAGTTTGCC 57.336 37.500 0.00 0.00 0.00 4.52
3144 4437 7.839837 CGTTATTATCGTGAGTTAGAAGTTTGC 59.160 37.037 0.00 0.00 0.00 3.68
3145 4438 8.318876 CCGTTATTATCGTGAGTTAGAAGTTTG 58.681 37.037 0.00 0.00 0.00 2.93
3146 4439 8.031277 ACCGTTATTATCGTGAGTTAGAAGTTT 58.969 33.333 0.00 0.00 0.00 2.66
3147 4440 7.487189 CACCGTTATTATCGTGAGTTAGAAGTT 59.513 37.037 0.00 0.00 0.00 2.66
3148 4441 6.971184 CACCGTTATTATCGTGAGTTAGAAGT 59.029 38.462 0.00 0.00 0.00 3.01
3149 4442 6.417044 CCACCGTTATTATCGTGAGTTAGAAG 59.583 42.308 0.00 0.00 0.00 2.85
3150 4443 6.127647 ACCACCGTTATTATCGTGAGTTAGAA 60.128 38.462 0.00 0.00 0.00 2.10
3151 4444 5.357878 ACCACCGTTATTATCGTGAGTTAGA 59.642 40.000 0.00 0.00 0.00 2.10
3152 4445 5.457799 CACCACCGTTATTATCGTGAGTTAG 59.542 44.000 0.00 0.00 0.00 2.34
3153 4446 5.342433 CACCACCGTTATTATCGTGAGTTA 58.658 41.667 0.00 0.00 0.00 2.24
3154 4447 4.178540 CACCACCGTTATTATCGTGAGTT 58.821 43.478 0.00 0.00 0.00 3.01
3155 4448 3.777478 CACCACCGTTATTATCGTGAGT 58.223 45.455 0.00 0.00 0.00 3.41
3156 4449 2.538449 GCACCACCGTTATTATCGTGAG 59.462 50.000 0.00 0.00 0.00 3.51
3157 4450 2.094130 TGCACCACCGTTATTATCGTGA 60.094 45.455 0.00 0.00 0.00 4.35
3158 4451 2.272678 TGCACCACCGTTATTATCGTG 58.727 47.619 0.00 0.00 0.00 4.35
3159 4452 2.676632 TGCACCACCGTTATTATCGT 57.323 45.000 0.00 0.00 0.00 3.73
3160 4453 4.545823 ATTTGCACCACCGTTATTATCG 57.454 40.909 0.00 0.00 0.00 2.92
3161 4454 7.197071 TGATATTTGCACCACCGTTATTATC 57.803 36.000 0.00 0.00 0.00 1.75
3162 4455 7.360861 CGATGATATTTGCACCACCGTTATTAT 60.361 37.037 0.00 0.00 0.00 1.28
3163 4456 6.073494 CGATGATATTTGCACCACCGTTATTA 60.073 38.462 0.00 0.00 0.00 0.98
3164 4457 5.277779 CGATGATATTTGCACCACCGTTATT 60.278 40.000 0.00 0.00 0.00 1.40
3165 4458 4.213270 CGATGATATTTGCACCACCGTTAT 59.787 41.667 0.00 0.00 0.00 1.89
3166 4459 3.558006 CGATGATATTTGCACCACCGTTA 59.442 43.478 0.00 0.00 0.00 3.18
3167 4460 2.354510 CGATGATATTTGCACCACCGTT 59.645 45.455 0.00 0.00 0.00 4.44
3168 4461 1.939934 CGATGATATTTGCACCACCGT 59.060 47.619 0.00 0.00 0.00 4.83
3169 4462 1.334059 GCGATGATATTTGCACCACCG 60.334 52.381 0.00 0.00 0.00 4.94
3170 4463 1.334059 CGCGATGATATTTGCACCACC 60.334 52.381 0.00 0.00 0.00 4.61
3171 4464 1.597195 TCGCGATGATATTTGCACCAC 59.403 47.619 3.71 0.00 0.00 4.16
3172 4465 1.946745 TCGCGATGATATTTGCACCA 58.053 45.000 3.71 0.00 0.00 4.17
3173 4466 2.908634 CTTCGCGATGATATTTGCACC 58.091 47.619 16.38 0.00 0.00 5.01
3174 4467 2.301787 GCTTCGCGATGATATTTGCAC 58.698 47.619 24.47 0.90 0.00 4.57
3175 4468 2.668617 GCTTCGCGATGATATTTGCA 57.331 45.000 24.47 0.00 0.00 4.08
3188 4481 2.410053 GGAATCATATCACTCGCTTCGC 59.590 50.000 0.00 0.00 0.00 4.70
3189 4482 3.642705 TGGAATCATATCACTCGCTTCG 58.357 45.455 0.00 0.00 0.00 3.79
3190 4483 4.876125 TCTGGAATCATATCACTCGCTTC 58.124 43.478 0.00 0.00 0.00 3.86
3191 4484 4.944619 TCTGGAATCATATCACTCGCTT 57.055 40.909 0.00 0.00 0.00 4.68
3192 4485 4.586421 TCTTCTGGAATCATATCACTCGCT 59.414 41.667 0.00 0.00 0.00 4.93
3193 4486 4.683781 GTCTTCTGGAATCATATCACTCGC 59.316 45.833 0.00 0.00 0.00 5.03
3194 4487 6.083098 AGTCTTCTGGAATCATATCACTCG 57.917 41.667 0.00 0.00 0.00 4.18
3195 4488 7.946207 TGTAGTCTTCTGGAATCATATCACTC 58.054 38.462 0.00 0.00 0.00 3.51
3196 4489 7.904558 TGTAGTCTTCTGGAATCATATCACT 57.095 36.000 0.00 0.00 0.00 3.41
3197 4490 8.200792 AGTTGTAGTCTTCTGGAATCATATCAC 58.799 37.037 0.00 0.00 0.00 3.06
3198 4491 8.311395 AGTTGTAGTCTTCTGGAATCATATCA 57.689 34.615 0.00 0.00 0.00 2.15
3199 4492 8.417106 TGAGTTGTAGTCTTCTGGAATCATATC 58.583 37.037 0.00 0.00 0.00 1.63
3200 4493 8.311395 TGAGTTGTAGTCTTCTGGAATCATAT 57.689 34.615 0.00 0.00 0.00 1.78
3201 4494 7.718334 TGAGTTGTAGTCTTCTGGAATCATA 57.282 36.000 0.00 0.00 0.00 2.15
3202 4495 6.611613 TGAGTTGTAGTCTTCTGGAATCAT 57.388 37.500 0.00 0.00 0.00 2.45
3203 4496 6.611613 ATGAGTTGTAGTCTTCTGGAATCA 57.388 37.500 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.