Multiple sequence alignment - TraesCS7D01G175700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G175700 chr7D 100.000 3542 0 0 1 3542 127684035 127680494 0.000000e+00 6541.0
1 TraesCS7D01G175700 chr7D 90.382 1310 110 12 1330 2633 127650559 127649260 0.000000e+00 1707.0
2 TraesCS7D01G175700 chr7D 93.031 904 43 7 441 1338 127652437 127651548 0.000000e+00 1303.0
3 TraesCS7D01G175700 chr7D 80.756 1403 228 32 1008 2384 127737587 127736201 0.000000e+00 1057.0
4 TraesCS7D01G175700 chr7D 82.108 911 152 10 1481 2384 127732908 127732002 0.000000e+00 769.0
5 TraesCS7D01G175700 chr7D 80.866 716 129 7 1675 2384 127730452 127729739 1.110000e-154 556.0
6 TraesCS7D01G175700 chr7D 82.965 634 65 25 2945 3542 136532035 136531409 1.870000e-147 532.0
7 TraesCS7D01G175700 chr7D 88.825 349 39 0 1010 1358 127766123 127765775 2.530000e-116 429.0
8 TraesCS7D01G175700 chr7D 88.539 349 40 0 1010 1358 127753609 127753261 1.180000e-114 424.0
9 TraesCS7D01G175700 chr7D 88.690 336 38 0 1008 1343 127700350 127700015 9.150000e-111 411.0
10 TraesCS7D01G175700 chr7D 86.890 328 28 6 2638 2957 127647535 127647215 1.560000e-93 353.0
11 TraesCS7D01G175700 chr7D 97.959 49 1 0 650 698 127671514 127671466 6.300000e-13 86.1
12 TraesCS7D01G175700 chr7B 91.614 2051 141 15 604 2633 89543343 89541303 0.000000e+00 2806.0
13 TraesCS7D01G175700 chr7B 82.857 910 145 9 1467 2370 89560574 89559670 0.000000e+00 806.0
14 TraesCS7D01G175700 chr7B 82.378 925 154 8 1467 2384 89656868 89655946 0.000000e+00 797.0
15 TraesCS7D01G175700 chr7B 90.756 357 26 5 3189 3542 918861 919213 1.490000e-128 470.0
16 TraesCS7D01G175700 chr7B 90.616 341 32 0 1010 1350 89657503 89657163 1.500000e-123 453.0
17 TraesCS7D01G175700 chr7B 88.623 334 37 1 1010 1343 89561025 89560693 4.260000e-109 405.0
18 TraesCS7D01G175700 chr7B 83.420 386 47 4 177 562 89543817 89543449 3.390000e-90 342.0
19 TraesCS7D01G175700 chr7B 89.151 212 16 4 2758 2968 89481896 89481691 1.260000e-64 257.0
20 TraesCS7D01G175700 chr7A 92.143 1260 89 8 1379 2633 128405647 128404393 0.000000e+00 1770.0
21 TraesCS7D01G175700 chr7A 90.898 802 50 5 604 1383 128406523 128405723 0.000000e+00 1055.0
22 TraesCS7D01G175700 chr7A 82.416 927 152 8 1467 2384 128510810 128509886 0.000000e+00 798.0
23 TraesCS7D01G175700 chr7A 86.167 600 61 9 2959 3542 731693767 731693174 2.320000e-176 628.0
24 TraesCS7D01G175700 chr7A 90.782 358 27 2 3188 3542 509816439 509816793 1.150000e-129 473.0
25 TraesCS7D01G175700 chr7A 89.766 342 34 1 1010 1351 128511388 128511048 1.510000e-118 436.0
26 TraesCS7D01G175700 chr7A 82.773 238 25 7 2638 2867 128402618 128402389 7.760000e-47 198.0
27 TraesCS7D01G175700 chr6A 85.880 602 49 17 2957 3542 400114632 400114051 3.020000e-170 608.0
28 TraesCS7D01G175700 chr1D 87.308 520 35 16 3051 3542 335999925 335999409 1.850000e-157 566.0
29 TraesCS7D01G175700 chr1D 84.656 567 67 14 2988 3542 292514657 292515215 6.690000e-152 547.0
30 TraesCS7D01G175700 chr4D 84.068 590 72 15 2961 3542 465072865 465073440 1.860000e-152 549.0
31 TraesCS7D01G175700 chr4D 82.383 596 68 19 2958 3542 213411984 213412553 5.320000e-133 484.0
32 TraesCS7D01G175700 chr2A 83.961 611 57 17 2958 3542 167395101 167394506 6.690000e-152 547.0
33 TraesCS7D01G175700 chr5D 86.296 467 41 15 3094 3542 557191150 557190689 1.480000e-133 486.0
34 TraesCS7D01G175700 chr3A 89.807 363 31 2 3186 3542 31549442 31549804 8.960000e-126 460.0
35 TraesCS7D01G175700 chr4A 80.565 566 60 30 2961 3496 610458767 610459312 1.190000e-104 390.0
36 TraesCS7D01G175700 chr5B 78.930 617 84 21 2958 3541 40995463 40996066 9.280000e-101 377.0
37 TraesCS7D01G175700 chr3D 85.774 239 26 4 2959 3196 10910300 10910069 2.730000e-61 246.0
38 TraesCS7D01G175700 chr3D 79.532 171 24 7 2720 2888 436671209 436671370 1.040000e-20 111.0
39 TraesCS7D01G175700 chr1A 84.583 240 27 6 2959 3196 57954901 57954670 2.750000e-56 230.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G175700 chr7D 127680494 127684035 3541 True 6541.000000 6541 100.000000 1 3542 1 chr7D.!!$R2 3541
1 TraesCS7D01G175700 chr7D 127647215 127652437 5222 True 1121.000000 1707 90.101000 441 2957 3 chr7D.!!$R7 2516
2 TraesCS7D01G175700 chr7D 127729739 127737587 7848 True 794.000000 1057 81.243333 1008 2384 3 chr7D.!!$R8 1376
3 TraesCS7D01G175700 chr7D 136531409 136532035 626 True 532.000000 532 82.965000 2945 3542 1 chr7D.!!$R6 597
4 TraesCS7D01G175700 chr7B 89541303 89543817 2514 True 1574.000000 2806 87.517000 177 2633 2 chr7B.!!$R2 2456
5 TraesCS7D01G175700 chr7B 89655946 89657503 1557 True 625.000000 797 86.497000 1010 2384 2 chr7B.!!$R4 1374
6 TraesCS7D01G175700 chr7B 89559670 89561025 1355 True 605.500000 806 85.740000 1010 2370 2 chr7B.!!$R3 1360
7 TraesCS7D01G175700 chr7A 128402389 128406523 4134 True 1007.666667 1770 88.604667 604 2867 3 chr7A.!!$R2 2263
8 TraesCS7D01G175700 chr7A 731693174 731693767 593 True 628.000000 628 86.167000 2959 3542 1 chr7A.!!$R1 583
9 TraesCS7D01G175700 chr7A 128509886 128511388 1502 True 617.000000 798 86.091000 1010 2384 2 chr7A.!!$R3 1374
10 TraesCS7D01G175700 chr6A 400114051 400114632 581 True 608.000000 608 85.880000 2957 3542 1 chr6A.!!$R1 585
11 TraesCS7D01G175700 chr1D 335999409 335999925 516 True 566.000000 566 87.308000 3051 3542 1 chr1D.!!$R1 491
12 TraesCS7D01G175700 chr1D 292514657 292515215 558 False 547.000000 547 84.656000 2988 3542 1 chr1D.!!$F1 554
13 TraesCS7D01G175700 chr4D 465072865 465073440 575 False 549.000000 549 84.068000 2961 3542 1 chr4D.!!$F2 581
14 TraesCS7D01G175700 chr4D 213411984 213412553 569 False 484.000000 484 82.383000 2958 3542 1 chr4D.!!$F1 584
15 TraesCS7D01G175700 chr2A 167394506 167395101 595 True 547.000000 547 83.961000 2958 3542 1 chr2A.!!$R1 584
16 TraesCS7D01G175700 chr4A 610458767 610459312 545 False 390.000000 390 80.565000 2961 3496 1 chr4A.!!$F1 535
17 TraesCS7D01G175700 chr5B 40995463 40996066 603 False 377.000000 377 78.930000 2958 3541 1 chr5B.!!$F1 583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
57 58 0.035820 GGGCGTTGAGGGTGATTGTA 60.036 55.0 0.0 0.0 0.00 2.41 F
147 148 0.036732 AGTGTGGTGGCGACAATGAT 59.963 50.0 0.0 0.0 46.06 2.45 F
148 149 0.168788 GTGTGGTGGCGACAATGATG 59.831 55.0 0.0 0.0 46.06 3.07 F
164 165 0.183731 GATGGGGGCGAAGGAGATTT 59.816 55.0 0.0 0.0 0.00 2.17 F
578 579 0.245813 AGTAAGAGAAACGGGTCGGC 59.754 55.0 0.0 0.0 0.00 5.54 F
579 580 0.245813 GTAAGAGAAACGGGTCGGCT 59.754 55.0 0.0 0.0 0.00 5.52 F
581 582 0.531200 AAGAGAAACGGGTCGGCTAG 59.469 55.0 0.0 0.0 0.00 3.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1792 7375 0.541392 CCTGATTCCCACACGATCCA 59.459 55.000 0.00 0.00 0.00 3.41 R
1834 7417 3.053455 GGATTAGAGTCGAAGCAATCCG 58.947 50.000 11.39 0.00 36.38 4.18 R
1923 7506 3.457380 ACAATGGTCATGTGAGGCTCTAT 59.543 43.478 16.72 7.50 0.00 1.98 R
2211 10056 5.945784 ACTACTCTGCATTTGAGCCATTAAA 59.054 36.000 1.55 0.00 35.12 1.52 R
2348 10206 1.885887 TGGCATTACAGTGGAAAGCAC 59.114 47.619 16.67 7.14 0.00 4.40 R
2349 10207 2.284754 TGGCATTACAGTGGAAAGCA 57.715 45.000 16.67 1.07 0.00 3.91 R
2624 10487 2.658679 TACTCCCAATGCGATGGCCG 62.659 60.000 0.00 0.00 39.26 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.284405 GAGGAAGGTCCGTGGGGA 60.284 66.667 0.00 0.00 42.75 4.81
18 19 2.284699 AGGAAGGTCCGTGGGGAG 60.285 66.667 0.00 0.00 44.97 4.30
19 20 2.606826 GGAAGGTCCGTGGGGAGT 60.607 66.667 0.00 0.00 44.97 3.85
20 21 2.663196 GAAGGTCCGTGGGGAGTG 59.337 66.667 0.00 0.00 44.97 3.51
21 22 3.607370 GAAGGTCCGTGGGGAGTGC 62.607 68.421 0.00 0.00 44.97 4.40
22 23 4.640690 AGGTCCGTGGGGAGTGCT 62.641 66.667 0.00 0.00 44.97 4.40
23 24 4.083862 GGTCCGTGGGGAGTGCTC 62.084 72.222 0.00 0.00 44.97 4.26
24 25 3.311110 GTCCGTGGGGAGTGCTCA 61.311 66.667 1.41 0.00 44.97 4.26
25 26 2.525629 TCCGTGGGGAGTGCTCAA 60.526 61.111 1.41 0.00 37.43 3.02
26 27 2.358737 CCGTGGGGAGTGCTCAAC 60.359 66.667 1.41 0.00 34.06 3.18
27 28 2.743718 CGTGGGGAGTGCTCAACT 59.256 61.111 1.41 0.00 43.85 3.16
28 29 1.669115 CGTGGGGAGTGCTCAACTG 60.669 63.158 1.41 0.00 40.07 3.16
29 30 1.968540 GTGGGGAGTGCTCAACTGC 60.969 63.158 1.41 0.00 46.06 4.40
34 35 2.680312 GGAGTGCTCAACTGCATAGA 57.320 50.000 1.41 0.00 46.06 1.98
35 36 2.548875 GGAGTGCTCAACTGCATAGAG 58.451 52.381 1.41 5.98 46.06 2.43
36 37 2.167281 GGAGTGCTCAACTGCATAGAGA 59.833 50.000 12.69 0.00 46.06 3.10
37 38 3.181467 GGAGTGCTCAACTGCATAGAGAT 60.181 47.826 12.69 0.46 46.06 2.75
38 39 3.794717 AGTGCTCAACTGCATAGAGATG 58.205 45.455 12.69 0.00 45.23 2.90
39 40 2.871022 GTGCTCAACTGCATAGAGATGG 59.129 50.000 12.69 0.00 45.23 3.51
40 41 2.158856 TGCTCAACTGCATAGAGATGGG 60.159 50.000 12.69 0.00 38.12 4.00
41 42 2.492012 CTCAACTGCATAGAGATGGGC 58.508 52.381 4.66 0.00 33.26 5.36
42 43 1.202568 TCAACTGCATAGAGATGGGCG 60.203 52.381 0.00 0.00 33.26 6.13
43 44 0.833287 AACTGCATAGAGATGGGCGT 59.167 50.000 0.00 0.00 33.26 5.68
44 45 0.833287 ACTGCATAGAGATGGGCGTT 59.167 50.000 0.00 0.00 33.26 4.84
45 46 1.224075 CTGCATAGAGATGGGCGTTG 58.776 55.000 0.00 0.00 33.26 4.10
46 47 0.829990 TGCATAGAGATGGGCGTTGA 59.170 50.000 0.00 0.00 33.26 3.18
47 48 1.202568 TGCATAGAGATGGGCGTTGAG 60.203 52.381 0.00 0.00 33.26 3.02
48 49 1.875576 GCATAGAGATGGGCGTTGAGG 60.876 57.143 0.00 0.00 33.26 3.86
49 50 1.051812 ATAGAGATGGGCGTTGAGGG 58.948 55.000 0.00 0.00 0.00 4.30
50 51 0.325296 TAGAGATGGGCGTTGAGGGT 60.325 55.000 0.00 0.00 0.00 4.34
51 52 1.450312 GAGATGGGCGTTGAGGGTG 60.450 63.158 0.00 0.00 0.00 4.61
52 53 1.899437 GAGATGGGCGTTGAGGGTGA 61.899 60.000 0.00 0.00 0.00 4.02
53 54 1.224592 GATGGGCGTTGAGGGTGAT 59.775 57.895 0.00 0.00 0.00 3.06
54 55 0.394352 GATGGGCGTTGAGGGTGATT 60.394 55.000 0.00 0.00 0.00 2.57
55 56 0.680921 ATGGGCGTTGAGGGTGATTG 60.681 55.000 0.00 0.00 0.00 2.67
56 57 1.303317 GGGCGTTGAGGGTGATTGT 60.303 57.895 0.00 0.00 0.00 2.71
57 58 0.035820 GGGCGTTGAGGGTGATTGTA 60.036 55.000 0.00 0.00 0.00 2.41
58 59 1.369625 GGCGTTGAGGGTGATTGTAG 58.630 55.000 0.00 0.00 0.00 2.74
59 60 0.727398 GCGTTGAGGGTGATTGTAGC 59.273 55.000 0.00 0.00 0.00 3.58
60 61 0.999406 CGTTGAGGGTGATTGTAGCG 59.001 55.000 0.00 0.00 0.00 4.26
61 62 1.403647 CGTTGAGGGTGATTGTAGCGA 60.404 52.381 0.00 0.00 0.00 4.93
62 63 2.738643 CGTTGAGGGTGATTGTAGCGAT 60.739 50.000 0.00 0.00 0.00 4.58
63 64 2.602257 TGAGGGTGATTGTAGCGATG 57.398 50.000 0.00 0.00 0.00 3.84
64 65 2.107366 TGAGGGTGATTGTAGCGATGA 58.893 47.619 0.00 0.00 0.00 2.92
65 66 2.700371 TGAGGGTGATTGTAGCGATGAT 59.300 45.455 0.00 0.00 0.00 2.45
66 67 3.062763 GAGGGTGATTGTAGCGATGATG 58.937 50.000 0.00 0.00 0.00 3.07
67 68 2.146342 GGGTGATTGTAGCGATGATGG 58.854 52.381 0.00 0.00 0.00 3.51
68 69 2.146342 GGTGATTGTAGCGATGATGGG 58.854 52.381 0.00 0.00 0.00 4.00
69 70 2.146342 GTGATTGTAGCGATGATGGGG 58.854 52.381 0.00 0.00 0.00 4.96
70 71 2.046292 TGATTGTAGCGATGATGGGGA 58.954 47.619 0.00 0.00 0.00 4.81
71 72 2.437651 TGATTGTAGCGATGATGGGGAA 59.562 45.455 0.00 0.00 0.00 3.97
72 73 2.620251 TTGTAGCGATGATGGGGAAG 57.380 50.000 0.00 0.00 0.00 3.46
73 74 1.496060 TGTAGCGATGATGGGGAAGT 58.504 50.000 0.00 0.00 0.00 3.01
74 75 1.138859 TGTAGCGATGATGGGGAAGTG 59.861 52.381 0.00 0.00 0.00 3.16
75 76 0.106708 TAGCGATGATGGGGAAGTGC 59.893 55.000 0.00 0.00 0.00 4.40
76 77 2.537560 GCGATGATGGGGAAGTGCG 61.538 63.158 0.00 0.00 0.00 5.34
77 78 1.143838 CGATGATGGGGAAGTGCGA 59.856 57.895 0.00 0.00 0.00 5.10
78 79 0.250038 CGATGATGGGGAAGTGCGAT 60.250 55.000 0.00 0.00 0.00 4.58
79 80 1.233019 GATGATGGGGAAGTGCGATG 58.767 55.000 0.00 0.00 0.00 3.84
80 81 0.839277 ATGATGGGGAAGTGCGATGA 59.161 50.000 0.00 0.00 0.00 2.92
81 82 0.178767 TGATGGGGAAGTGCGATGAG 59.821 55.000 0.00 0.00 0.00 2.90
82 83 0.465705 GATGGGGAAGTGCGATGAGA 59.534 55.000 0.00 0.00 0.00 3.27
83 84 0.467384 ATGGGGAAGTGCGATGAGAG 59.533 55.000 0.00 0.00 0.00 3.20
84 85 1.144936 GGGGAAGTGCGATGAGAGG 59.855 63.158 0.00 0.00 0.00 3.69
85 86 1.144936 GGGAAGTGCGATGAGAGGG 59.855 63.158 0.00 0.00 0.00 4.30
86 87 1.144936 GGAAGTGCGATGAGAGGGG 59.855 63.158 0.00 0.00 0.00 4.79
87 88 1.330655 GGAAGTGCGATGAGAGGGGA 61.331 60.000 0.00 0.00 0.00 4.81
88 89 0.179097 GAAGTGCGATGAGAGGGGAC 60.179 60.000 0.00 0.00 0.00 4.46
89 90 1.949847 AAGTGCGATGAGAGGGGACG 61.950 60.000 0.00 0.00 0.00 4.79
90 91 3.147595 TGCGATGAGAGGGGACGG 61.148 66.667 0.00 0.00 0.00 4.79
91 92 3.917760 GCGATGAGAGGGGACGGG 61.918 72.222 0.00 0.00 0.00 5.28
92 93 2.442272 CGATGAGAGGGGACGGGT 60.442 66.667 0.00 0.00 0.00 5.28
93 94 2.058595 CGATGAGAGGGGACGGGTT 61.059 63.158 0.00 0.00 0.00 4.11
94 95 1.823976 GATGAGAGGGGACGGGTTC 59.176 63.158 0.00 0.00 0.00 3.62
95 96 0.976073 GATGAGAGGGGACGGGTTCA 60.976 60.000 0.00 0.00 0.00 3.18
96 97 1.265454 ATGAGAGGGGACGGGTTCAC 61.265 60.000 0.00 0.00 0.00 3.18
97 98 1.911766 GAGAGGGGACGGGTTCACA 60.912 63.158 0.00 0.00 0.00 3.58
98 99 1.460689 AGAGGGGACGGGTTCACAA 60.461 57.895 0.00 0.00 0.00 3.33
99 100 1.302271 GAGGGGACGGGTTCACAAC 60.302 63.158 0.00 0.00 0.00 3.32
100 101 1.765597 GAGGGGACGGGTTCACAACT 61.766 60.000 0.00 0.00 0.00 3.16
101 102 1.599797 GGGGACGGGTTCACAACTG 60.600 63.158 0.00 0.00 0.00 3.16
102 103 2.258726 GGGACGGGTTCACAACTGC 61.259 63.158 0.00 0.00 0.00 4.40
103 104 2.258726 GGACGGGTTCACAACTGCC 61.259 63.158 0.00 0.00 0.00 4.85
104 105 1.227853 GACGGGTTCACAACTGCCT 60.228 57.895 0.00 0.00 0.00 4.75
105 106 0.818040 GACGGGTTCACAACTGCCTT 60.818 55.000 0.00 0.00 0.00 4.35
106 107 0.470766 ACGGGTTCACAACTGCCTTA 59.529 50.000 0.00 0.00 0.00 2.69
107 108 1.156736 CGGGTTCACAACTGCCTTAG 58.843 55.000 0.00 0.00 0.00 2.18
108 109 1.542547 CGGGTTCACAACTGCCTTAGT 60.543 52.381 0.00 0.00 42.89 2.24
109 110 1.880027 GGGTTCACAACTGCCTTAGTG 59.120 52.381 0.00 0.00 40.26 2.74
110 111 1.266989 GGTTCACAACTGCCTTAGTGC 59.733 52.381 0.00 0.00 40.26 4.40
111 112 1.069906 GTTCACAACTGCCTTAGTGCG 60.070 52.381 0.00 0.00 40.26 5.34
112 113 0.391228 TCACAACTGCCTTAGTGCGA 59.609 50.000 0.00 0.00 40.26 5.10
113 114 0.792640 CACAACTGCCTTAGTGCGAG 59.207 55.000 0.00 0.00 40.26 5.03
114 115 0.320771 ACAACTGCCTTAGTGCGAGG 60.321 55.000 0.00 0.00 40.26 4.63
115 116 1.021390 CAACTGCCTTAGTGCGAGGG 61.021 60.000 0.00 0.00 40.26 4.30
116 117 2.185310 AACTGCCTTAGTGCGAGGGG 62.185 60.000 0.00 0.00 40.26 4.79
117 118 3.391665 CTGCCTTAGTGCGAGGGGG 62.392 68.421 0.00 0.00 34.75 5.40
118 119 4.858680 GCCTTAGTGCGAGGGGGC 62.859 72.222 0.00 0.00 34.75 5.80
119 120 4.530857 CCTTAGTGCGAGGGGGCG 62.531 72.222 0.00 0.00 35.06 6.13
120 121 3.458163 CTTAGTGCGAGGGGGCGA 61.458 66.667 0.00 0.00 35.06 5.54
121 122 2.762459 TTAGTGCGAGGGGGCGAT 60.762 61.111 0.00 0.00 35.06 4.58
122 123 2.978452 CTTAGTGCGAGGGGGCGATG 62.978 65.000 0.00 0.00 35.06 3.84
131 132 4.489771 GGGGCGATGGGGTGAGTG 62.490 72.222 0.00 0.00 0.00 3.51
132 133 3.717294 GGGCGATGGGGTGAGTGT 61.717 66.667 0.00 0.00 0.00 3.55
133 134 2.436646 GGCGATGGGGTGAGTGTG 60.437 66.667 0.00 0.00 0.00 3.82
134 135 2.436646 GCGATGGGGTGAGTGTGG 60.437 66.667 0.00 0.00 0.00 4.17
135 136 3.068881 CGATGGGGTGAGTGTGGT 58.931 61.111 0.00 0.00 0.00 4.16
136 137 1.375908 CGATGGGGTGAGTGTGGTG 60.376 63.158 0.00 0.00 0.00 4.17
137 138 1.002134 GATGGGGTGAGTGTGGTGG 60.002 63.158 0.00 0.00 0.00 4.61
138 139 3.210012 ATGGGGTGAGTGTGGTGGC 62.210 63.158 0.00 0.00 0.00 5.01
140 141 3.936203 GGGTGAGTGTGGTGGCGA 61.936 66.667 0.00 0.00 0.00 5.54
141 142 2.665185 GGTGAGTGTGGTGGCGAC 60.665 66.667 0.00 0.00 0.00 5.19
142 143 2.108157 GTGAGTGTGGTGGCGACA 59.892 61.111 0.00 0.00 38.70 4.35
143 144 1.522806 GTGAGTGTGGTGGCGACAA 60.523 57.895 0.00 0.00 46.06 3.18
144 145 0.884704 GTGAGTGTGGTGGCGACAAT 60.885 55.000 0.00 0.00 46.06 2.71
145 146 0.884259 TGAGTGTGGTGGCGACAATG 60.884 55.000 0.00 0.00 46.06 2.82
146 147 0.602638 GAGTGTGGTGGCGACAATGA 60.603 55.000 0.00 0.00 46.06 2.57
147 148 0.036732 AGTGTGGTGGCGACAATGAT 59.963 50.000 0.00 0.00 46.06 2.45
148 149 0.168788 GTGTGGTGGCGACAATGATG 59.831 55.000 0.00 0.00 46.06 3.07
149 150 0.959867 TGTGGTGGCGACAATGATGG 60.960 55.000 0.00 0.00 46.06 3.51
150 151 1.378382 TGGTGGCGACAATGATGGG 60.378 57.895 0.00 0.00 46.06 4.00
151 152 2.120909 GGTGGCGACAATGATGGGG 61.121 63.158 0.00 0.00 46.06 4.96
152 153 2.120909 GTGGCGACAATGATGGGGG 61.121 63.158 0.00 0.00 46.06 5.40
153 154 3.219198 GGCGACAATGATGGGGGC 61.219 66.667 0.00 0.00 0.00 5.80
154 155 3.585990 GCGACAATGATGGGGGCG 61.586 66.667 0.00 0.00 0.00 6.13
155 156 2.189257 CGACAATGATGGGGGCGA 59.811 61.111 0.00 0.00 0.00 5.54
156 157 1.451207 CGACAATGATGGGGGCGAA 60.451 57.895 0.00 0.00 0.00 4.70
157 158 1.439353 CGACAATGATGGGGGCGAAG 61.439 60.000 0.00 0.00 0.00 3.79
158 159 1.076777 ACAATGATGGGGGCGAAGG 60.077 57.895 0.00 0.00 0.00 3.46
159 160 1.227102 CAATGATGGGGGCGAAGGA 59.773 57.895 0.00 0.00 0.00 3.36
160 161 0.820891 CAATGATGGGGGCGAAGGAG 60.821 60.000 0.00 0.00 0.00 3.69
161 162 0.988145 AATGATGGGGGCGAAGGAGA 60.988 55.000 0.00 0.00 0.00 3.71
162 163 0.769776 ATGATGGGGGCGAAGGAGAT 60.770 55.000 0.00 0.00 0.00 2.75
163 164 0.988145 TGATGGGGGCGAAGGAGATT 60.988 55.000 0.00 0.00 0.00 2.40
164 165 0.183731 GATGGGGGCGAAGGAGATTT 59.816 55.000 0.00 0.00 0.00 2.17
165 166 0.631212 ATGGGGGCGAAGGAGATTTT 59.369 50.000 0.00 0.00 0.00 1.82
166 167 1.291109 TGGGGGCGAAGGAGATTTTA 58.709 50.000 0.00 0.00 0.00 1.52
167 168 1.064979 TGGGGGCGAAGGAGATTTTAC 60.065 52.381 0.00 0.00 0.00 2.01
168 169 1.064979 GGGGGCGAAGGAGATTTTACA 60.065 52.381 0.00 0.00 0.00 2.41
169 170 2.422945 GGGGGCGAAGGAGATTTTACAT 60.423 50.000 0.00 0.00 0.00 2.29
170 171 3.181448 GGGGGCGAAGGAGATTTTACATA 60.181 47.826 0.00 0.00 0.00 2.29
171 172 3.813724 GGGGCGAAGGAGATTTTACATAC 59.186 47.826 0.00 0.00 0.00 2.39
172 173 3.813724 GGGCGAAGGAGATTTTACATACC 59.186 47.826 0.00 0.00 0.00 2.73
173 174 4.444449 GGGCGAAGGAGATTTTACATACCT 60.444 45.833 0.00 0.00 0.00 3.08
174 175 4.511826 GGCGAAGGAGATTTTACATACCTG 59.488 45.833 0.00 0.00 0.00 4.00
175 176 5.357257 GCGAAGGAGATTTTACATACCTGA 58.643 41.667 0.00 0.00 0.00 3.86
190 191 1.227380 CTGAGTATGGGCACGCTCC 60.227 63.158 3.14 0.00 0.00 4.70
191 192 2.279517 GAGTATGGGCACGCTCCG 60.280 66.667 0.00 0.00 0.00 4.63
192 193 3.792053 GAGTATGGGCACGCTCCGG 62.792 68.421 0.00 0.00 0.00 5.14
235 236 1.202770 GCGTGCATATAGGGAAAGGGT 60.203 52.381 0.00 0.00 0.00 4.34
243 244 1.128809 TAGGGAAAGGGTGCGGAACA 61.129 55.000 0.00 0.00 0.00 3.18
244 245 1.304134 GGGAAAGGGTGCGGAACAT 60.304 57.895 0.00 0.00 0.00 2.71
274 275 2.914214 CCATTAATTGGCGTTGTTCGTG 59.086 45.455 0.00 0.00 39.09 4.35
284 285 1.399089 CGTTGTTCGTGGTGAAAAGGT 59.601 47.619 0.00 0.00 38.60 3.50
291 292 1.134175 CGTGGTGAAAAGGTGTTTGCT 59.866 47.619 0.00 0.00 0.00 3.91
303 304 1.854126 GTGTTTGCTGCATTGACACAC 59.146 47.619 25.87 18.97 40.12 3.82
306 307 2.500369 GCTGCATTGACACACGCG 60.500 61.111 3.53 3.53 0.00 6.01
348 349 0.865111 CAACGCTGTTGACCGATCAA 59.135 50.000 13.79 0.00 42.73 2.57
368 369 2.786495 GCGCGGGAGGAAGAGATCA 61.786 63.158 8.83 0.00 0.00 2.92
369 370 1.816537 CGCGGGAGGAAGAGATCAA 59.183 57.895 0.00 0.00 0.00 2.57
388 389 1.222115 ACCTGAAACGTCGCTTCTGC 61.222 55.000 9.58 0.00 0.00 4.26
407 408 2.819595 CGAGCGGTTGTGGATGGG 60.820 66.667 0.00 0.00 0.00 4.00
408 409 2.438434 GAGCGGTTGTGGATGGGG 60.438 66.667 0.00 0.00 0.00 4.96
410 411 2.438434 GCGGTTGTGGATGGGGAG 60.438 66.667 0.00 0.00 0.00 4.30
420 421 4.047166 TGTGGATGGGGAGAACTTCATAT 58.953 43.478 0.00 0.00 0.00 1.78
424 425 5.066593 GGATGGGGAGAACTTCATATCAAC 58.933 45.833 0.00 0.00 0.00 3.18
457 458 5.453339 CCTTGAAATATGAAGGCTACCGAGA 60.453 44.000 0.00 0.00 32.63 4.04
471 472 2.163509 ACCGAGAGCGATATGTAGCAT 58.836 47.619 0.00 0.00 40.82 3.79
571 572 8.231304 TCAACGGTTATTAAGTAAGAGAAACG 57.769 34.615 0.00 0.00 0.00 3.60
573 574 6.101997 ACGGTTATTAAGTAAGAGAAACGGG 58.898 40.000 0.00 0.00 0.00 5.28
575 576 6.254373 CGGTTATTAAGTAAGAGAAACGGGTC 59.746 42.308 0.00 0.00 0.00 4.46
576 577 6.254373 GGTTATTAAGTAAGAGAAACGGGTCG 59.746 42.308 0.00 0.00 0.00 4.79
577 578 2.738013 AAGTAAGAGAAACGGGTCGG 57.262 50.000 0.00 0.00 0.00 4.79
578 579 0.245813 AGTAAGAGAAACGGGTCGGC 59.754 55.000 0.00 0.00 0.00 5.54
579 580 0.245813 GTAAGAGAAACGGGTCGGCT 59.754 55.000 0.00 0.00 0.00 5.52
580 581 1.474077 GTAAGAGAAACGGGTCGGCTA 59.526 52.381 0.00 0.00 0.00 3.93
581 582 0.531200 AAGAGAAACGGGTCGGCTAG 59.469 55.000 0.00 0.00 0.00 3.42
583 584 1.304713 AGAAACGGGTCGGCTAGGA 60.305 57.895 0.00 0.00 0.00 2.94
612 677 3.723245 GGGGGTCGGCTAGAGTTT 58.277 61.111 0.00 0.00 0.00 2.66
873 952 2.968574 AGGACCATAGCATCATTCGAGT 59.031 45.455 0.00 0.00 0.00 4.18
927 1016 6.088085 GCAAACAAAGTTTGTCATAGATTCCG 59.912 38.462 21.10 2.48 44.59 4.30
946 1035 2.287608 CCGTCGCATAGCTTCATACTCA 60.288 50.000 0.00 0.00 0.00 3.41
952 1041 6.743627 GTCGCATAGCTTCATACTCAGTATAC 59.256 42.308 0.00 0.00 0.00 1.47
978 1076 2.839438 CGCTGTCGATCGAAGCACG 61.839 63.158 32.02 24.33 39.81 5.34
1148 1246 2.021584 CGTTGCACTACTCGCAGCA 61.022 57.895 0.00 0.00 40.23 4.41
1170 1268 4.603535 ACAAAGGGCGGCCTGCTT 62.604 61.111 33.52 20.58 45.43 3.91
1278 1376 0.608035 AACCCATCGTTGATGCCGTT 60.608 50.000 1.24 3.63 38.59 4.44
1350 2445 3.512724 TCTCCTCAAACGGTAAGTTAGGG 59.487 47.826 0.00 0.00 43.37 3.53
1392 2604 5.647589 TGATGAATTGTACTGAGTACCGTC 58.352 41.667 19.17 14.01 38.14 4.79
1447 2660 3.513515 TGGCTACTATTTTTGGGCTTTGG 59.486 43.478 0.00 0.00 0.00 3.28
1450 2663 5.512404 GGCTACTATTTTTGGGCTTTGGTTT 60.512 40.000 0.00 0.00 0.00 3.27
1464 2841 7.098477 GGGCTTTGGTTTTACCGTAAATAAAT 58.902 34.615 4.57 0.00 42.58 1.40
1465 2842 7.603404 GGGCTTTGGTTTTACCGTAAATAAATT 59.397 33.333 4.57 0.00 42.58 1.82
1551 2928 1.043673 GTCCGGCATGGTCTACTCCT 61.044 60.000 0.00 0.00 39.52 3.69
1557 2934 2.491086 GGCATGGTCTACTCCTAGCCTA 60.491 54.545 0.00 0.00 41.38 3.93
1671 7254 1.178534 CCACGGAGCACATGGGTTTT 61.179 55.000 0.00 0.00 0.00 2.43
1708 7291 4.265904 TGAAAGATAGCTCAAACGACCA 57.734 40.909 0.00 0.00 0.00 4.02
1776 7359 3.493176 CGTGGAGGTGATTGATGCTATCA 60.493 47.826 0.00 0.00 37.55 2.15
1792 7375 1.403814 ATCATCCACGAGATCGGTGT 58.596 50.000 15.70 1.29 44.95 4.16
1834 7417 2.287188 TGTCTCCGTTCGTTGACTACAC 60.287 50.000 12.75 0.00 0.00 2.90
1866 7449 3.429410 CGACTCTAATCCACATGTGCTCA 60.429 47.826 20.81 6.58 0.00 4.26
1923 7506 3.153919 GGGTTTCTTTACTGCCACATGA 58.846 45.455 0.00 0.00 0.00 3.07
2211 10056 6.540438 TCGGTTACACAGATTATCCTTTCT 57.460 37.500 0.00 0.00 0.00 2.52
2237 10085 3.754965 TGGCTCAAATGCAGAGTAGTTT 58.245 40.909 3.67 0.00 35.55 2.66
2238 10086 4.144297 TGGCTCAAATGCAGAGTAGTTTT 58.856 39.130 3.67 0.00 35.55 2.43
2242 10090 6.749118 GGCTCAAATGCAGAGTAGTTTTATTG 59.251 38.462 3.67 0.00 35.55 1.90
2256 10104 8.793592 AGTAGTTTTATTGACCCAACTTCAATC 58.206 33.333 0.94 0.00 41.73 2.67
2277 10126 5.079689 TCACTGATGTGGTTCGCTTATAA 57.920 39.130 0.00 0.00 43.94 0.98
2432 10293 9.384682 CGTATTTGTTTTTATTTCGGTACAAGT 57.615 29.630 0.00 0.00 0.00 3.16
2442 10303 3.034721 TCGGTACAAGTGTGGATTCAC 57.965 47.619 0.00 0.00 43.87 3.18
2491 10353 9.601810 ATCCAAGAGATATGTGGTTGTAGTATA 57.398 33.333 0.00 0.00 31.60 1.47
2516 10378 3.411446 TGGTTTCGCTCACTCATTCAAT 58.589 40.909 0.00 0.00 0.00 2.57
2567 10430 3.365472 GTGGCTTTGGATAAACCCATCT 58.635 45.455 0.00 0.00 34.82 2.90
2608 10471 1.063417 CCGAGGGTAGGGTAGAGGAAA 60.063 57.143 0.00 0.00 0.00 3.13
2624 10487 1.000866 AAAGAGGGGCATTGGGCTC 59.999 57.895 0.00 0.00 44.66 4.70
2639 10502 3.282157 CTCGGCCATCGCATTGGG 61.282 66.667 2.24 0.00 37.24 4.12
2641 10504 3.282157 CGGCCATCGCATTGGGAG 61.282 66.667 2.24 0.00 37.24 4.30
2642 10505 2.124151 GGCCATCGCATTGGGAGT 60.124 61.111 9.43 0.00 37.24 3.85
2643 10506 1.148273 GGCCATCGCATTGGGAGTA 59.852 57.895 9.43 0.00 37.24 2.59
2644 10507 0.250901 GGCCATCGCATTGGGAGTAT 60.251 55.000 9.43 0.00 37.24 2.12
2645 10508 1.003118 GGCCATCGCATTGGGAGTATA 59.997 52.381 9.43 0.00 37.24 1.47
2647 10510 2.679837 GCCATCGCATTGGGAGTATATG 59.320 50.000 9.43 2.47 37.24 1.78
2653 12289 4.814234 TCGCATTGGGAGTATATGTTTCAC 59.186 41.667 0.00 0.00 0.00 3.18
2657 12293 6.017605 GCATTGGGAGTATATGTTTCACTGAG 60.018 42.308 0.00 0.00 0.00 3.35
2676 12312 3.987868 TGAGTTTGTAGAAGTGTGATCGC 59.012 43.478 0.00 0.00 0.00 4.58
2678 12314 4.632153 AGTTTGTAGAAGTGTGATCGCTT 58.368 39.130 7.94 2.35 45.52 4.68
2684 12320 4.720649 AGAAGTGTGATCGCTTAGCTAA 57.279 40.909 5.94 5.94 43.32 3.09
2689 12325 4.865365 AGTGTGATCGCTTAGCTAACTTTC 59.135 41.667 7.94 0.00 0.00 2.62
2701 12337 7.960195 GCTTAGCTAACTTTCTGTCTCATTTTC 59.040 37.037 0.86 0.00 0.00 2.29
2716 12352 5.813157 TCTCATTTTCTGTTTGACACACGTA 59.187 36.000 0.00 0.00 0.00 3.57
2717 12353 5.802064 TCATTTTCTGTTTGACACACGTAC 58.198 37.500 0.00 0.00 0.00 3.67
2722 12358 5.441709 TCTGTTTGACACACGTACATCTA 57.558 39.130 0.00 0.00 0.00 1.98
2731 12367 6.364976 TGACACACGTACATCTATTGTTTGAG 59.635 38.462 0.00 0.00 39.87 3.02
2742 12378 5.255687 TCTATTGTTTGAGGTGCACATGAT 58.744 37.500 20.43 0.41 0.00 2.45
2769 12405 7.306866 GGACATTATCGTGCTTCTTATTCTGAC 60.307 40.741 0.00 0.00 0.00 3.51
2774 12410 3.604582 GTGCTTCTTATTCTGACCTGCT 58.395 45.455 0.00 0.00 0.00 4.24
2783 12419 2.543777 TCTGACCTGCTGTTTACCAC 57.456 50.000 0.00 0.00 0.00 4.16
2790 12426 3.380320 ACCTGCTGTTTACCACAACTTTC 59.620 43.478 0.00 0.00 33.87 2.62
2791 12427 3.632145 CCTGCTGTTTACCACAACTTTCT 59.368 43.478 0.00 0.00 33.87 2.52
2792 12428 4.498009 CCTGCTGTTTACCACAACTTTCTG 60.498 45.833 0.00 0.00 33.87 3.02
2793 12429 4.265893 TGCTGTTTACCACAACTTTCTGA 58.734 39.130 0.00 0.00 33.87 3.27
2801 12437 3.005554 CCACAACTTTCTGATCGCATCT 58.994 45.455 0.00 0.00 0.00 2.90
2804 12440 2.215907 ACTTTCTGATCGCATCTCCG 57.784 50.000 0.00 0.00 0.00 4.63
2807 12443 3.319405 ACTTTCTGATCGCATCTCCGTAT 59.681 43.478 0.00 0.00 0.00 3.06
2815 12452 2.165641 TCGCATCTCCGTATTGTGTCTT 59.834 45.455 0.00 0.00 0.00 3.01
2873 12517 4.451900 ACCTTGTGGTCTGTAGAAACTTG 58.548 43.478 0.00 0.00 44.78 3.16
2920 12564 1.068055 CACGTTTAGGAGTACAGCGGT 60.068 52.381 0.00 0.00 0.00 5.68
2951 12595 5.067023 GGTTTGGAGCAGATCTTTAATCCAG 59.933 44.000 12.36 0.00 38.05 3.86
2986 12630 3.017581 CCAGCTGTTAGGCCCCCT 61.018 66.667 13.81 0.00 37.71 4.79
3078 12722 3.680786 CAGTCGTCGGCCCACAGA 61.681 66.667 0.16 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.284405 TCCCCACGGACCTTCCTC 60.284 66.667 0.00 0.00 33.30 3.71
2 3 2.606826 ACTCCCCACGGACCTTCC 60.607 66.667 0.00 0.00 33.32 3.46
3 4 2.663196 CACTCCCCACGGACCTTC 59.337 66.667 0.00 0.00 33.32 3.46
4 5 3.637273 GCACTCCCCACGGACCTT 61.637 66.667 0.00 0.00 33.32 3.50
5 6 4.640690 AGCACTCCCCACGGACCT 62.641 66.667 0.00 0.00 33.32 3.85
6 7 4.083862 GAGCACTCCCCACGGACC 62.084 72.222 0.00 0.00 33.32 4.46
7 8 2.879233 TTGAGCACTCCCCACGGAC 61.879 63.158 0.00 0.00 33.32 4.79
8 9 2.525629 TTGAGCACTCCCCACGGA 60.526 61.111 0.00 0.00 36.45 4.69
9 10 2.358737 GTTGAGCACTCCCCACGG 60.359 66.667 0.00 0.00 0.00 4.94
11 12 1.968540 GCAGTTGAGCACTCCCCAC 60.969 63.158 0.00 0.00 30.92 4.61
12 13 2.431683 GCAGTTGAGCACTCCCCA 59.568 61.111 0.00 0.00 30.92 4.96
13 14 2.431683 TGCAGTTGAGCACTCCCC 59.568 61.111 0.00 0.00 40.11 4.81
20 21 2.492012 CCCATCTCTATGCAGTTGAGC 58.508 52.381 8.09 0.00 30.90 4.26
21 22 2.492012 GCCCATCTCTATGCAGTTGAG 58.508 52.381 0.00 0.00 0.00 3.02
22 23 1.202568 CGCCCATCTCTATGCAGTTGA 60.203 52.381 0.00 0.00 0.00 3.18
23 24 1.224075 CGCCCATCTCTATGCAGTTG 58.776 55.000 0.00 0.00 0.00 3.16
24 25 0.833287 ACGCCCATCTCTATGCAGTT 59.167 50.000 0.00 0.00 0.00 3.16
25 26 0.833287 AACGCCCATCTCTATGCAGT 59.167 50.000 0.00 0.00 0.00 4.40
26 27 1.202568 TCAACGCCCATCTCTATGCAG 60.203 52.381 0.00 0.00 0.00 4.41
27 28 0.829990 TCAACGCCCATCTCTATGCA 59.170 50.000 0.00 0.00 0.00 3.96
28 29 1.506493 CTCAACGCCCATCTCTATGC 58.494 55.000 0.00 0.00 0.00 3.14
29 30 1.270518 CCCTCAACGCCCATCTCTATG 60.271 57.143 0.00 0.00 0.00 2.23
30 31 1.051812 CCCTCAACGCCCATCTCTAT 58.948 55.000 0.00 0.00 0.00 1.98
31 32 0.325296 ACCCTCAACGCCCATCTCTA 60.325 55.000 0.00 0.00 0.00 2.43
32 33 1.613630 ACCCTCAACGCCCATCTCT 60.614 57.895 0.00 0.00 0.00 3.10
33 34 1.450312 CACCCTCAACGCCCATCTC 60.450 63.158 0.00 0.00 0.00 2.75
34 35 1.274703 ATCACCCTCAACGCCCATCT 61.275 55.000 0.00 0.00 0.00 2.90
35 36 0.394352 AATCACCCTCAACGCCCATC 60.394 55.000 0.00 0.00 0.00 3.51
36 37 0.680921 CAATCACCCTCAACGCCCAT 60.681 55.000 0.00 0.00 0.00 4.00
37 38 1.303236 CAATCACCCTCAACGCCCA 60.303 57.895 0.00 0.00 0.00 5.36
38 39 0.035820 TACAATCACCCTCAACGCCC 60.036 55.000 0.00 0.00 0.00 6.13
39 40 1.369625 CTACAATCACCCTCAACGCC 58.630 55.000 0.00 0.00 0.00 5.68
40 41 0.727398 GCTACAATCACCCTCAACGC 59.273 55.000 0.00 0.00 0.00 4.84
41 42 0.999406 CGCTACAATCACCCTCAACG 59.001 55.000 0.00 0.00 0.00 4.10
42 43 2.380084 TCGCTACAATCACCCTCAAC 57.620 50.000 0.00 0.00 0.00 3.18
43 44 2.499693 TCATCGCTACAATCACCCTCAA 59.500 45.455 0.00 0.00 0.00 3.02
44 45 2.107366 TCATCGCTACAATCACCCTCA 58.893 47.619 0.00 0.00 0.00 3.86
45 46 2.890808 TCATCGCTACAATCACCCTC 57.109 50.000 0.00 0.00 0.00 4.30
46 47 2.224378 CCATCATCGCTACAATCACCCT 60.224 50.000 0.00 0.00 0.00 4.34
47 48 2.146342 CCATCATCGCTACAATCACCC 58.854 52.381 0.00 0.00 0.00 4.61
48 49 2.146342 CCCATCATCGCTACAATCACC 58.854 52.381 0.00 0.00 0.00 4.02
49 50 2.146342 CCCCATCATCGCTACAATCAC 58.854 52.381 0.00 0.00 0.00 3.06
50 51 2.046292 TCCCCATCATCGCTACAATCA 58.954 47.619 0.00 0.00 0.00 2.57
51 52 2.839486 TCCCCATCATCGCTACAATC 57.161 50.000 0.00 0.00 0.00 2.67
52 53 2.439507 ACTTCCCCATCATCGCTACAAT 59.560 45.455 0.00 0.00 0.00 2.71
53 54 1.837439 ACTTCCCCATCATCGCTACAA 59.163 47.619 0.00 0.00 0.00 2.41
54 55 1.138859 CACTTCCCCATCATCGCTACA 59.861 52.381 0.00 0.00 0.00 2.74
55 56 1.871080 CACTTCCCCATCATCGCTAC 58.129 55.000 0.00 0.00 0.00 3.58
56 57 0.106708 GCACTTCCCCATCATCGCTA 59.893 55.000 0.00 0.00 0.00 4.26
57 58 1.153086 GCACTTCCCCATCATCGCT 60.153 57.895 0.00 0.00 0.00 4.93
58 59 2.537560 CGCACTTCCCCATCATCGC 61.538 63.158 0.00 0.00 0.00 4.58
59 60 0.250038 ATCGCACTTCCCCATCATCG 60.250 55.000 0.00 0.00 0.00 3.84
60 61 1.202687 TCATCGCACTTCCCCATCATC 60.203 52.381 0.00 0.00 0.00 2.92
61 62 0.839277 TCATCGCACTTCCCCATCAT 59.161 50.000 0.00 0.00 0.00 2.45
62 63 0.178767 CTCATCGCACTTCCCCATCA 59.821 55.000 0.00 0.00 0.00 3.07
63 64 0.465705 TCTCATCGCACTTCCCCATC 59.534 55.000 0.00 0.00 0.00 3.51
64 65 0.467384 CTCTCATCGCACTTCCCCAT 59.533 55.000 0.00 0.00 0.00 4.00
65 66 1.617018 CCTCTCATCGCACTTCCCCA 61.617 60.000 0.00 0.00 0.00 4.96
66 67 1.144936 CCTCTCATCGCACTTCCCC 59.855 63.158 0.00 0.00 0.00 4.81
67 68 1.144936 CCCTCTCATCGCACTTCCC 59.855 63.158 0.00 0.00 0.00 3.97
68 69 1.144936 CCCCTCTCATCGCACTTCC 59.855 63.158 0.00 0.00 0.00 3.46
69 70 0.179097 GTCCCCTCTCATCGCACTTC 60.179 60.000 0.00 0.00 0.00 3.01
70 71 1.901085 GTCCCCTCTCATCGCACTT 59.099 57.895 0.00 0.00 0.00 3.16
71 72 2.418910 CGTCCCCTCTCATCGCACT 61.419 63.158 0.00 0.00 0.00 4.40
72 73 2.105128 CGTCCCCTCTCATCGCAC 59.895 66.667 0.00 0.00 0.00 5.34
73 74 3.147595 CCGTCCCCTCTCATCGCA 61.148 66.667 0.00 0.00 0.00 5.10
74 75 3.917760 CCCGTCCCCTCTCATCGC 61.918 72.222 0.00 0.00 0.00 4.58
75 76 2.017559 GAACCCGTCCCCTCTCATCG 62.018 65.000 0.00 0.00 0.00 3.84
76 77 0.976073 TGAACCCGTCCCCTCTCATC 60.976 60.000 0.00 0.00 0.00 2.92
77 78 1.080354 TGAACCCGTCCCCTCTCAT 59.920 57.895 0.00 0.00 0.00 2.90
78 79 1.911766 GTGAACCCGTCCCCTCTCA 60.912 63.158 0.00 0.00 0.00 3.27
79 80 1.477685 TTGTGAACCCGTCCCCTCTC 61.478 60.000 0.00 0.00 0.00 3.20
80 81 1.460689 TTGTGAACCCGTCCCCTCT 60.461 57.895 0.00 0.00 0.00 3.69
81 82 1.302271 GTTGTGAACCCGTCCCCTC 60.302 63.158 0.00 0.00 0.00 4.30
82 83 1.768888 AGTTGTGAACCCGTCCCCT 60.769 57.895 0.00 0.00 0.00 4.79
83 84 1.599797 CAGTTGTGAACCCGTCCCC 60.600 63.158 0.00 0.00 0.00 4.81
84 85 2.258726 GCAGTTGTGAACCCGTCCC 61.259 63.158 0.00 0.00 0.00 4.46
85 86 2.258726 GGCAGTTGTGAACCCGTCC 61.259 63.158 0.00 0.00 0.00 4.79
86 87 0.818040 AAGGCAGTTGTGAACCCGTC 60.818 55.000 0.00 0.00 0.00 4.79
87 88 0.470766 TAAGGCAGTTGTGAACCCGT 59.529 50.000 0.00 0.00 0.00 5.28
88 89 1.156736 CTAAGGCAGTTGTGAACCCG 58.843 55.000 0.00 0.00 0.00 5.28
89 90 1.880027 CACTAAGGCAGTTGTGAACCC 59.120 52.381 0.00 0.00 34.26 4.11
90 91 1.266989 GCACTAAGGCAGTTGTGAACC 59.733 52.381 6.90 0.00 34.26 3.62
91 92 1.069906 CGCACTAAGGCAGTTGTGAAC 60.070 52.381 6.90 0.00 34.26 3.18
92 93 1.202592 TCGCACTAAGGCAGTTGTGAA 60.203 47.619 6.90 0.00 34.26 3.18
93 94 0.391228 TCGCACTAAGGCAGTTGTGA 59.609 50.000 6.90 0.00 34.26 3.58
94 95 0.792640 CTCGCACTAAGGCAGTTGTG 59.207 55.000 0.00 0.00 34.26 3.33
95 96 0.320771 CCTCGCACTAAGGCAGTTGT 60.321 55.000 0.00 0.00 34.26 3.32
96 97 1.021390 CCCTCGCACTAAGGCAGTTG 61.021 60.000 0.00 0.00 34.26 3.16
97 98 1.296715 CCCTCGCACTAAGGCAGTT 59.703 57.895 0.00 0.00 34.26 3.16
98 99 2.660064 CCCCTCGCACTAAGGCAGT 61.660 63.158 0.00 0.00 38.32 4.40
99 100 2.187946 CCCCTCGCACTAAGGCAG 59.812 66.667 0.00 0.00 32.15 4.85
100 101 3.399181 CCCCCTCGCACTAAGGCA 61.399 66.667 0.00 0.00 32.15 4.75
101 102 4.858680 GCCCCCTCGCACTAAGGC 62.859 72.222 0.00 0.00 32.15 4.35
102 103 4.530857 CGCCCCCTCGCACTAAGG 62.531 72.222 0.00 0.00 0.00 2.69
103 104 2.797278 ATCGCCCCCTCGCACTAAG 61.797 63.158 0.00 0.00 0.00 2.18
104 105 2.762459 ATCGCCCCCTCGCACTAA 60.762 61.111 0.00 0.00 0.00 2.24
105 106 3.536917 CATCGCCCCCTCGCACTA 61.537 66.667 0.00 0.00 0.00 2.74
114 115 4.489771 CACTCACCCCATCGCCCC 62.490 72.222 0.00 0.00 0.00 5.80
115 116 3.717294 ACACTCACCCCATCGCCC 61.717 66.667 0.00 0.00 0.00 6.13
116 117 2.436646 CACACTCACCCCATCGCC 60.437 66.667 0.00 0.00 0.00 5.54
117 118 2.436646 CCACACTCACCCCATCGC 60.437 66.667 0.00 0.00 0.00 4.58
118 119 1.375908 CACCACACTCACCCCATCG 60.376 63.158 0.00 0.00 0.00 3.84
119 120 1.002134 CCACCACACTCACCCCATC 60.002 63.158 0.00 0.00 0.00 3.51
120 121 3.170362 CCACCACACTCACCCCAT 58.830 61.111 0.00 0.00 0.00 4.00
121 122 3.884774 GCCACCACACTCACCCCA 61.885 66.667 0.00 0.00 0.00 4.96
123 124 3.936203 TCGCCACCACACTCACCC 61.936 66.667 0.00 0.00 0.00 4.61
124 125 2.665185 GTCGCCACCACACTCACC 60.665 66.667 0.00 0.00 0.00 4.02
125 126 0.884704 ATTGTCGCCACCACACTCAC 60.885 55.000 0.00 0.00 0.00 3.51
126 127 0.884259 CATTGTCGCCACCACACTCA 60.884 55.000 0.00 0.00 0.00 3.41
127 128 0.602638 TCATTGTCGCCACCACACTC 60.603 55.000 0.00 0.00 0.00 3.51
128 129 0.036732 ATCATTGTCGCCACCACACT 59.963 50.000 0.00 0.00 0.00 3.55
129 130 0.168788 CATCATTGTCGCCACCACAC 59.831 55.000 0.00 0.00 0.00 3.82
130 131 0.959867 CCATCATTGTCGCCACCACA 60.960 55.000 0.00 0.00 0.00 4.17
131 132 1.656818 CCCATCATTGTCGCCACCAC 61.657 60.000 0.00 0.00 0.00 4.16
132 133 1.378382 CCCATCATTGTCGCCACCA 60.378 57.895 0.00 0.00 0.00 4.17
133 134 2.120909 CCCCATCATTGTCGCCACC 61.121 63.158 0.00 0.00 0.00 4.61
134 135 2.120909 CCCCCATCATTGTCGCCAC 61.121 63.158 0.00 0.00 0.00 5.01
135 136 2.275089 CCCCCATCATTGTCGCCA 59.725 61.111 0.00 0.00 0.00 5.69
136 137 3.219198 GCCCCCATCATTGTCGCC 61.219 66.667 0.00 0.00 0.00 5.54
137 138 3.585990 CGCCCCCATCATTGTCGC 61.586 66.667 0.00 0.00 0.00 5.19
138 139 1.439353 CTTCGCCCCCATCATTGTCG 61.439 60.000 0.00 0.00 0.00 4.35
139 140 1.103398 CCTTCGCCCCCATCATTGTC 61.103 60.000 0.00 0.00 0.00 3.18
140 141 1.076777 CCTTCGCCCCCATCATTGT 60.077 57.895 0.00 0.00 0.00 2.71
141 142 0.820891 CTCCTTCGCCCCCATCATTG 60.821 60.000 0.00 0.00 0.00 2.82
142 143 0.988145 TCTCCTTCGCCCCCATCATT 60.988 55.000 0.00 0.00 0.00 2.57
143 144 0.769776 ATCTCCTTCGCCCCCATCAT 60.770 55.000 0.00 0.00 0.00 2.45
144 145 0.988145 AATCTCCTTCGCCCCCATCA 60.988 55.000 0.00 0.00 0.00 3.07
145 146 0.183731 AAATCTCCTTCGCCCCCATC 59.816 55.000 0.00 0.00 0.00 3.51
146 147 0.631212 AAAATCTCCTTCGCCCCCAT 59.369 50.000 0.00 0.00 0.00 4.00
147 148 1.064979 GTAAAATCTCCTTCGCCCCCA 60.065 52.381 0.00 0.00 0.00 4.96
148 149 1.064979 TGTAAAATCTCCTTCGCCCCC 60.065 52.381 0.00 0.00 0.00 5.40
149 150 2.413310 TGTAAAATCTCCTTCGCCCC 57.587 50.000 0.00 0.00 0.00 5.80
150 151 3.813724 GGTATGTAAAATCTCCTTCGCCC 59.186 47.826 0.00 0.00 0.00 6.13
151 152 4.511826 CAGGTATGTAAAATCTCCTTCGCC 59.488 45.833 0.00 0.00 0.00 5.54
152 153 5.357257 TCAGGTATGTAAAATCTCCTTCGC 58.643 41.667 0.00 0.00 0.00 4.70
153 154 6.574350 ACTCAGGTATGTAAAATCTCCTTCG 58.426 40.000 0.00 0.00 0.00 3.79
154 155 9.482627 CATACTCAGGTATGTAAAATCTCCTTC 57.517 37.037 7.69 0.00 45.99 3.46
168 169 0.393077 GCGTGCCCATACTCAGGTAT 59.607 55.000 0.00 0.00 39.02 2.73
169 170 0.686441 AGCGTGCCCATACTCAGGTA 60.686 55.000 0.00 0.00 0.00 3.08
170 171 1.961180 GAGCGTGCCCATACTCAGGT 61.961 60.000 0.00 0.00 0.00 4.00
171 172 1.227380 GAGCGTGCCCATACTCAGG 60.227 63.158 0.00 0.00 0.00 3.86
172 173 1.227380 GGAGCGTGCCCATACTCAG 60.227 63.158 0.00 0.00 0.00 3.35
173 174 2.900273 GGAGCGTGCCCATACTCA 59.100 61.111 0.00 0.00 0.00 3.41
174 175 2.279517 CGGAGCGTGCCCATACTC 60.280 66.667 0.00 0.00 0.00 2.59
175 176 3.849951 CCGGAGCGTGCCCATACT 61.850 66.667 0.00 0.00 0.00 2.12
184 185 1.101049 CCCATTTTATGCCGGAGCGT 61.101 55.000 5.05 0.00 44.31 5.07
190 191 1.178534 ATCCGCCCCATTTTATGCCG 61.179 55.000 0.00 0.00 0.00 5.69
191 192 1.047801 AATCCGCCCCATTTTATGCC 58.952 50.000 0.00 0.00 0.00 4.40
192 193 2.908688 AAATCCGCCCCATTTTATGC 57.091 45.000 0.00 0.00 0.00 3.14
235 236 2.431771 CCGTCGTCATGTTCCGCA 60.432 61.111 0.00 0.00 0.00 5.69
243 244 1.946768 CCAATTAATGGCCGTCGTCAT 59.053 47.619 0.00 0.00 43.80 3.06
244 245 1.374560 CCAATTAATGGCCGTCGTCA 58.625 50.000 0.00 0.00 43.80 4.35
266 267 2.438411 ACACCTTTTCACCACGAACAA 58.562 42.857 0.00 0.00 31.73 2.83
274 275 1.134848 TGCAGCAAACACCTTTTCACC 60.135 47.619 0.00 0.00 0.00 4.02
284 285 1.533547 CGTGTGTCAATGCAGCAAACA 60.534 47.619 0.00 1.47 0.00 2.83
291 292 1.840630 CTTCCGCGTGTGTCAATGCA 61.841 55.000 4.92 0.00 0.00 3.96
316 317 2.476051 CGTTGTCATCCGCACTGC 59.524 61.111 0.00 0.00 0.00 4.40
324 325 0.163788 CGGTCAACAGCGTTGTCATC 59.836 55.000 5.04 0.00 38.76 2.92
328 329 0.249699 TGATCGGTCAACAGCGTTGT 60.250 50.000 16.97 0.00 44.16 3.32
351 352 0.528684 GTTGATCTCTTCCTCCCGCG 60.529 60.000 0.00 0.00 0.00 6.46
357 358 3.325135 ACGTTTCAGGTTGATCTCTTCCT 59.675 43.478 0.00 0.00 0.00 3.36
365 366 1.798813 GAAGCGACGTTTCAGGTTGAT 59.201 47.619 18.08 0.00 0.00 2.57
368 369 1.217882 CAGAAGCGACGTTTCAGGTT 58.782 50.000 23.58 2.98 0.00 3.50
369 370 1.222115 GCAGAAGCGACGTTTCAGGT 61.222 55.000 23.58 3.32 0.00 4.00
388 389 3.853330 CATCCACAACCGCTCGCG 61.853 66.667 0.00 0.00 39.44 5.87
389 390 3.499737 CCATCCACAACCGCTCGC 61.500 66.667 0.00 0.00 0.00 5.03
391 392 2.438434 CCCCATCCACAACCGCTC 60.438 66.667 0.00 0.00 0.00 5.03
392 393 2.933287 TCCCCATCCACAACCGCT 60.933 61.111 0.00 0.00 0.00 5.52
407 408 4.567159 GTGGACGTTGATATGAAGTTCTCC 59.433 45.833 4.17 0.02 0.00 3.71
408 409 5.168569 TGTGGACGTTGATATGAAGTTCTC 58.831 41.667 4.17 0.00 0.00 2.87
410 411 5.390567 GGTTGTGGACGTTGATATGAAGTTC 60.391 44.000 0.00 0.00 0.00 3.01
424 425 5.391950 CCTTCATATTTCAAGGTTGTGGACG 60.392 44.000 0.00 0.00 35.34 4.79
457 458 1.620323 TGGAGCATGCTACATATCGCT 59.380 47.619 29.14 0.00 30.77 4.93
471 472 4.009675 GGATCGGCATAATTTATGGAGCA 58.990 43.478 16.22 0.00 36.68 4.26
571 572 2.838693 GACCCTCCTAGCCGACCC 60.839 72.222 0.00 0.00 0.00 4.46
573 574 3.217743 CCGACCCTCCTAGCCGAC 61.218 72.222 0.00 0.00 0.00 4.79
575 576 3.786884 TAGCCGACCCTCCTAGCCG 62.787 68.421 0.00 0.00 0.00 5.52
576 577 1.904378 CTAGCCGACCCTCCTAGCC 60.904 68.421 0.00 0.00 0.00 3.93
577 578 1.904378 CCTAGCCGACCCTCCTAGC 60.904 68.421 0.00 0.00 0.00 3.42
578 579 1.228613 CCCTAGCCGACCCTCCTAG 60.229 68.421 0.00 0.00 0.00 3.02
579 580 2.775741 CCCCTAGCCGACCCTCCTA 61.776 68.421 0.00 0.00 0.00 2.94
580 581 4.159108 CCCCTAGCCGACCCTCCT 62.159 72.222 0.00 0.00 0.00 3.69
599 600 5.754543 ACACTATAGAAACTCTAGCCGAC 57.245 43.478 6.78 0.00 31.67 4.79
709 784 7.687941 ACCTAAAGCATATGCATAATGGTAC 57.312 36.000 28.62 0.00 45.16 3.34
711 786 7.006509 AGAACCTAAAGCATATGCATAATGGT 58.993 34.615 28.62 23.24 45.16 3.55
816 895 3.265995 AGGTGTCGGGGTCTTGATAAAAT 59.734 43.478 0.00 0.00 0.00 1.82
823 902 1.595357 GGTAGGTGTCGGGGTCTTG 59.405 63.158 0.00 0.00 0.00 3.02
833 912 2.218603 CTTGCTTTCAACGGTAGGTGT 58.781 47.619 0.00 0.00 36.22 4.16
873 952 3.259123 TCTTGCTTGTGATGTGAGCTCTA 59.741 43.478 16.19 4.39 37.32 2.43
927 1016 3.971150 ACTGAGTATGAAGCTATGCGAC 58.029 45.455 0.00 0.00 0.00 5.19
978 1076 2.975799 TCTTTGCCGGTTGCGGAC 60.976 61.111 1.90 0.00 45.60 4.79
990 1088 3.187227 CCTTCGTGGTCATCTTGTCTTTG 59.813 47.826 0.00 0.00 0.00 2.77
991 1089 3.071023 TCCTTCGTGGTCATCTTGTCTTT 59.929 43.478 0.00 0.00 37.07 2.52
992 1090 2.632996 TCCTTCGTGGTCATCTTGTCTT 59.367 45.455 0.00 0.00 37.07 3.01
1350 2445 4.582701 TCAACACAAAATGTCATGGACC 57.417 40.909 0.00 0.00 42.31 4.46
1557 2934 1.220206 CATCTGCCTGAAGCCGTCT 59.780 57.895 0.00 0.00 42.71 4.18
1568 7151 2.890808 TCAACGGTATCTCATCTGCC 57.109 50.000 0.00 0.00 0.00 4.85
1569 7152 2.983136 CGATCAACGGTATCTCATCTGC 59.017 50.000 0.00 0.00 38.46 4.26
1671 7254 4.717877 TCTTTCATGAACTGCTCCAAGAA 58.282 39.130 7.89 0.00 0.00 2.52
1708 7291 3.682718 GCTGCCACCATACTTGTCAGTAT 60.683 47.826 0.00 0.00 45.72 2.12
1792 7375 0.541392 CCTGATTCCCACACGATCCA 59.459 55.000 0.00 0.00 0.00 3.41
1834 7417 3.053455 GGATTAGAGTCGAAGCAATCCG 58.947 50.000 11.39 0.00 36.38 4.18
1923 7506 3.457380 ACAATGGTCATGTGAGGCTCTAT 59.543 43.478 16.72 7.50 0.00 1.98
2211 10056 5.945784 ACTACTCTGCATTTGAGCCATTAAA 59.054 36.000 1.55 0.00 35.12 1.52
2237 10085 6.303054 TCAGTGATTGAAGTTGGGTCAATAA 58.697 36.000 0.00 0.00 43.96 1.40
2238 10086 5.875224 TCAGTGATTGAAGTTGGGTCAATA 58.125 37.500 0.00 0.00 43.96 1.90
2242 10090 4.074970 ACATCAGTGATTGAAGTTGGGTC 58.925 43.478 1.86 0.00 39.77 4.46
2256 10104 5.794687 TTTATAAGCGAACCACATCAGTG 57.205 39.130 0.00 0.00 45.47 3.66
2348 10206 1.885887 TGGCATTACAGTGGAAAGCAC 59.114 47.619 16.67 7.14 0.00 4.40
2349 10207 2.284754 TGGCATTACAGTGGAAAGCA 57.715 45.000 16.67 1.07 0.00 3.91
2350 10208 3.658757 TTTGGCATTACAGTGGAAAGC 57.341 42.857 6.76 6.76 0.00 3.51
2351 10209 8.902806 TCTATATTTTGGCATTACAGTGGAAAG 58.097 33.333 0.00 0.00 0.00 2.62
2491 10353 5.185454 TGAATGAGTGAGCGAAACCATTAT 58.815 37.500 0.00 0.00 0.00 1.28
2608 10471 3.801997 CGAGCCCAATGCCCCTCT 61.802 66.667 0.00 0.00 42.71 3.69
2624 10487 2.658679 TACTCCCAATGCGATGGCCG 62.659 60.000 0.00 0.00 39.26 6.13
2630 10493 4.814234 GTGAAACATATACTCCCAATGCGA 59.186 41.667 0.00 0.00 36.32 5.10
2633 10496 7.050377 ACTCAGTGAAACATATACTCCCAATG 58.950 38.462 0.00 0.00 41.43 2.82
2634 10497 7.200434 ACTCAGTGAAACATATACTCCCAAT 57.800 36.000 0.00 0.00 41.43 3.16
2635 10498 6.620877 ACTCAGTGAAACATATACTCCCAA 57.379 37.500 0.00 0.00 41.43 4.12
2636 10499 6.620877 AACTCAGTGAAACATATACTCCCA 57.379 37.500 0.00 0.00 41.43 4.37
2637 10500 6.879458 ACAAACTCAGTGAAACATATACTCCC 59.121 38.462 0.00 0.00 41.43 4.30
2639 10502 9.856488 TCTACAAACTCAGTGAAACATATACTC 57.144 33.333 0.00 0.00 41.43 2.59
2643 10506 8.993121 CACTTCTACAAACTCAGTGAAACATAT 58.007 33.333 0.00 0.00 41.43 1.78
2644 10507 7.985184 ACACTTCTACAAACTCAGTGAAACATA 59.015 33.333 4.67 0.00 41.43 2.29
2645 10508 6.823689 ACACTTCTACAAACTCAGTGAAACAT 59.176 34.615 4.67 0.00 41.43 2.71
2647 10510 6.312918 TCACACTTCTACAAACTCAGTGAAAC 59.687 38.462 4.67 0.00 38.59 2.78
2653 12289 4.090642 GCGATCACACTTCTACAAACTCAG 59.909 45.833 0.00 0.00 0.00 3.35
2657 12293 4.992381 AAGCGATCACACTTCTACAAAC 57.008 40.909 0.00 0.00 0.00 2.93
2676 12312 9.213799 AGAAAATGAGACAGAAAGTTAGCTAAG 57.786 33.333 6.38 0.00 0.00 2.18
2678 12314 8.150945 ACAGAAAATGAGACAGAAAGTTAGCTA 58.849 33.333 0.00 0.00 0.00 3.32
2684 12320 7.121168 TGTCAAACAGAAAATGAGACAGAAAGT 59.879 33.333 0.00 0.00 35.46 2.66
2689 12325 5.967674 GTGTGTCAAACAGAAAATGAGACAG 59.032 40.000 5.38 0.00 44.68 3.51
2701 12337 6.145534 ACAATAGATGTACGTGTGTCAAACAG 59.854 38.462 0.00 0.00 41.63 3.16
2716 12352 4.397420 TGTGCACCTCAAACAATAGATGT 58.603 39.130 15.69 0.00 46.82 3.06
2717 12353 5.124297 TCATGTGCACCTCAAACAATAGATG 59.876 40.000 15.69 6.50 0.00 2.90
2722 12358 3.056393 CCATCATGTGCACCTCAAACAAT 60.056 43.478 15.69 0.00 0.00 2.71
2731 12367 3.058708 CGATAATGTCCATCATGTGCACC 60.059 47.826 15.69 0.00 36.81 5.01
2742 12378 6.479990 CAGAATAAGAAGCACGATAATGTCCA 59.520 38.462 0.00 0.00 0.00 4.02
2746 12382 6.703607 AGGTCAGAATAAGAAGCACGATAATG 59.296 38.462 0.00 0.00 0.00 1.90
2752 12388 2.349886 GCAGGTCAGAATAAGAAGCACG 59.650 50.000 0.00 0.00 0.00 5.34
2769 12405 3.632145 AGAAAGTTGTGGTAAACAGCAGG 59.368 43.478 0.00 0.00 42.13 4.85
2774 12410 4.024387 GCGATCAGAAAGTTGTGGTAAACA 60.024 41.667 0.00 0.00 36.85 2.83
2783 12419 2.283617 CGGAGATGCGATCAGAAAGTTG 59.716 50.000 0.00 0.00 0.00 3.16
2790 12426 2.728318 CACAATACGGAGATGCGATCAG 59.272 50.000 0.00 0.00 0.00 2.90
2791 12427 2.100749 ACACAATACGGAGATGCGATCA 59.899 45.455 0.00 0.00 0.00 2.92
2792 12428 2.726760 GACACAATACGGAGATGCGATC 59.273 50.000 0.00 0.00 0.00 3.69
2793 12429 2.362397 AGACACAATACGGAGATGCGAT 59.638 45.455 0.00 0.00 0.00 4.58
2801 12437 5.733620 ACCTTTCTAAGACACAATACGGA 57.266 39.130 0.00 0.00 0.00 4.69
2807 12443 9.669887 TTACAAAGTTACCTTTCTAAGACACAA 57.330 29.630 0.00 0.00 38.87 3.33
2834 12471 7.742151 CCACAAGGTTAACGTTAGTTTATACC 58.258 38.462 12.85 14.16 41.49 2.73
2873 12517 6.398095 CCCTGGTAAATGGATTGAAACTTTC 58.602 40.000 0.00 0.00 0.00 2.62
2884 12528 0.322098 CGTGTGCCCTGGTAAATGGA 60.322 55.000 0.00 0.00 0.00 3.41
2920 12564 2.045561 TCTGCTCCAAACCGACAAAA 57.954 45.000 0.00 0.00 0.00 2.44
2951 12595 1.759445 TGGAGATGCTCTTAGTGCTCC 59.241 52.381 7.78 6.91 41.69 4.70
2974 12618 4.771745 GGGGGAGGGGGCCTAACA 62.772 72.222 0.84 0.00 31.76 2.41
2992 12636 3.119096 GCTCTGTTTCGGCGTCCC 61.119 66.667 6.85 0.00 0.00 4.46
3004 12648 4.559063 CATCCCCAGGCGGCTCTG 62.559 72.222 9.32 2.80 34.70 3.35
3019 12663 1.069765 CAATCTAGCGCCGGTCCAT 59.930 57.895 2.29 0.00 0.00 3.41
3022 12666 2.967615 GCCAATCTAGCGCCGGTC 60.968 66.667 2.29 0.00 0.00 4.79
3123 12767 1.329292 CCAAGTTCGTGAAAGTTCGCA 59.671 47.619 5.52 0.00 37.55 5.10
3178 12826 0.725117 CGGGCGTAGTTCCATGTTTC 59.275 55.000 0.00 0.00 0.00 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.