Multiple sequence alignment - TraesCS7D01G175600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G175600 chr7D 100.000 5030 0 0 1 5030 127653346 127648317 0.000000e+00 9289.0
1 TraesCS7D01G175600 chr7D 90.382 1310 110 12 2788 4087 127682706 127681403 0.000000e+00 1707.0
2 TraesCS7D01G175600 chr7D 96.599 882 30 0 1 882 387104493 387103612 0.000000e+00 1463.0
3 TraesCS7D01G175600 chr7D 96.595 881 29 1 1 881 316623827 316624706 0.000000e+00 1459.0
4 TraesCS7D01G175600 chr7D 93.031 904 43 7 910 1799 127683595 127682698 0.000000e+00 1303.0
5 TraesCS7D01G175600 chr7D 81.290 946 158 14 2898 3827 127737154 127736212 0.000000e+00 749.0
6 TraesCS7D01G175600 chr7D 80.534 899 163 10 2938 3827 127732908 127732013 0.000000e+00 680.0
7 TraesCS7D01G175600 chr7D 80.682 704 127 7 3132 3827 127730452 127729750 5.730000e-149 538.0
8 TraesCS7D01G175600 chr7D 88.923 325 34 2 1471 1794 127753609 127753286 2.820000e-107 399.0
9 TraesCS7D01G175600 chr7D 87.719 342 41 1 1453 1794 127700365 127700025 1.010000e-106 398.0
10 TraesCS7D01G175600 chr7D 83.765 425 62 3 4608 5030 162199813 162199394 3.650000e-106 396.0
11 TraesCS7D01G175600 chr7D 88.272 324 38 0 1471 1794 127766123 127765800 6.110000e-104 388.0
12 TraesCS7D01G175600 chr7D 96.000 50 1 1 1107 1156 127671514 127671466 4.170000e-11 80.5
13 TraesCS7D01G175600 chr7A 94.467 1735 87 5 2837 4563 128405647 128403914 0.000000e+00 2663.0
14 TraesCS7D01G175600 chr7A 91.447 760 42 6 1059 1799 128406523 128405768 0.000000e+00 1022.0
15 TraesCS7D01G175600 chr7A 81.148 923 162 8 2916 3827 128510818 128509897 0.000000e+00 730.0
16 TraesCS7D01G175600 chr7A 92.964 469 29 1 4562 5030 128403867 128403403 0.000000e+00 680.0
17 TraesCS7D01G175600 chr7A 85.176 425 50 10 4608 5027 215180679 215181095 1.670000e-114 424.0
18 TraesCS7D01G175600 chr7A 89.815 324 33 0 1471 1794 128511388 128511065 2.800000e-112 416.0
19 TraesCS7D01G175600 chr7B 91.072 1781 147 8 2788 4560 89542606 89540830 0.000000e+00 2398.0
20 TraesCS7D01G175600 chr7B 92.297 753 46 4 1059 1802 89543343 89542594 0.000000e+00 1059.0
21 TraesCS7D01G175600 chr7B 81.461 917 158 10 2921 3827 89656871 89655957 0.000000e+00 741.0
22 TraesCS7D01G175600 chr7B 81.393 919 155 14 2916 3824 89560582 89559670 0.000000e+00 736.0
23 TraesCS7D01G175600 chr7B 90.741 324 30 0 1471 1794 89657503 89657180 2.780000e-117 433.0
24 TraesCS7D01G175600 chr7B 88.889 324 35 1 1471 1794 89561025 89560703 1.010000e-106 398.0
25 TraesCS7D01G175600 chr4D 97.275 991 27 0 1797 2787 414337908 414338898 0.000000e+00 1681.0
26 TraesCS7D01G175600 chr2D 96.274 993 31 1 1800 2786 69348662 69347670 0.000000e+00 1624.0
27 TraesCS7D01G175600 chr2D 96.939 882 26 1 1 882 613186522 613187402 0.000000e+00 1478.0
28 TraesCS7D01G175600 chr2D 96.825 882 28 0 1 882 358066541 358067422 0.000000e+00 1474.0
29 TraesCS7D01G175600 chr5D 96.825 882 28 0 1 882 460666114 460665233 0.000000e+00 1474.0
30 TraesCS7D01G175600 chr5D 96.825 882 27 1 1 882 207232892 207232012 0.000000e+00 1472.0
31 TraesCS7D01G175600 chr5D 96.599 882 30 0 1 882 264511694 264510813 0.000000e+00 1463.0
32 TraesCS7D01G175600 chr5D 84.412 417 49 10 4612 5023 404474025 404474430 3.650000e-106 396.0
33 TraesCS7D01G175600 chr5D 79.270 603 88 23 2105 2699 43324116 43323543 2.200000e-103 387.0
34 TraesCS7D01G175600 chr5A 96.712 882 29 0 1 882 231250286 231251167 0.000000e+00 1469.0
35 TraesCS7D01G175600 chr6D 96.485 882 31 0 1 882 273862697 273863578 0.000000e+00 1458.0
36 TraesCS7D01G175600 chr6D 83.568 426 62 7 4608 5030 472959886 472960306 4.720000e-105 392.0
37 TraesCS7D01G175600 chr2B 88.435 735 67 8 2054 2787 744556978 744556261 0.000000e+00 870.0
38 TraesCS7D01G175600 chr2B 84.615 819 81 17 1972 2787 148866851 148867627 0.000000e+00 773.0
39 TraesCS7D01G175600 chr2B 84.390 410 59 4 4608 5015 148249177 148249583 1.010000e-106 398.0
40 TraesCS7D01G175600 chr2B 85.263 190 20 5 1874 2056 744680574 744680386 6.650000e-44 189.0
41 TraesCS7D01G175600 chr3B 84.000 425 58 5 4608 5030 228737605 228738021 2.820000e-107 399.0
42 TraesCS7D01G175600 chr4B 83.486 436 59 9 4600 5030 21578718 21578291 1.310000e-105 394.0
43 TraesCS7D01G175600 chr4B 82.955 88 13 2 4475 4560 87889701 87889614 1.500000e-10 78.7
44 TraesCS7D01G175600 chr3A 84.248 419 49 12 4608 5022 398888346 398887941 4.720000e-105 392.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G175600 chr7D 127648317 127653346 5029 True 9289.000000 9289 100.000000 1 5030 1 chr7D.!!$R1 5029
1 TraesCS7D01G175600 chr7D 127681403 127683595 2192 True 1505.000000 1707 91.706500 910 4087 2 chr7D.!!$R8 3177
2 TraesCS7D01G175600 chr7D 387103612 387104493 881 True 1463.000000 1463 96.599000 1 882 1 chr7D.!!$R7 881
3 TraesCS7D01G175600 chr7D 316623827 316624706 879 False 1459.000000 1459 96.595000 1 881 1 chr7D.!!$F1 880
4 TraesCS7D01G175600 chr7D 127729750 127737154 7404 True 655.666667 749 80.835333 2898 3827 3 chr7D.!!$R9 929
5 TraesCS7D01G175600 chr7A 128403403 128406523 3120 True 1455.000000 2663 92.959333 1059 5030 3 chr7A.!!$R1 3971
6 TraesCS7D01G175600 chr7A 128509897 128511388 1491 True 573.000000 730 85.481500 1471 3827 2 chr7A.!!$R2 2356
7 TraesCS7D01G175600 chr7B 89540830 89543343 2513 True 1728.500000 2398 91.684500 1059 4560 2 chr7B.!!$R1 3501
8 TraesCS7D01G175600 chr7B 89655957 89657503 1546 True 587.000000 741 86.101000 1471 3827 2 chr7B.!!$R3 2356
9 TraesCS7D01G175600 chr7B 89559670 89561025 1355 True 567.000000 736 85.141000 1471 3824 2 chr7B.!!$R2 2353
10 TraesCS7D01G175600 chr4D 414337908 414338898 990 False 1681.000000 1681 97.275000 1797 2787 1 chr4D.!!$F1 990
11 TraesCS7D01G175600 chr2D 69347670 69348662 992 True 1624.000000 1624 96.274000 1800 2786 1 chr2D.!!$R1 986
12 TraesCS7D01G175600 chr2D 613186522 613187402 880 False 1478.000000 1478 96.939000 1 882 1 chr2D.!!$F2 881
13 TraesCS7D01G175600 chr2D 358066541 358067422 881 False 1474.000000 1474 96.825000 1 882 1 chr2D.!!$F1 881
14 TraesCS7D01G175600 chr5D 460665233 460666114 881 True 1474.000000 1474 96.825000 1 882 1 chr5D.!!$R4 881
15 TraesCS7D01G175600 chr5D 207232012 207232892 880 True 1472.000000 1472 96.825000 1 882 1 chr5D.!!$R2 881
16 TraesCS7D01G175600 chr5D 264510813 264511694 881 True 1463.000000 1463 96.599000 1 882 1 chr5D.!!$R3 881
17 TraesCS7D01G175600 chr5D 43323543 43324116 573 True 387.000000 387 79.270000 2105 2699 1 chr5D.!!$R1 594
18 TraesCS7D01G175600 chr5A 231250286 231251167 881 False 1469.000000 1469 96.712000 1 882 1 chr5A.!!$F1 881
19 TraesCS7D01G175600 chr6D 273862697 273863578 881 False 1458.000000 1458 96.485000 1 882 1 chr6D.!!$F1 881
20 TraesCS7D01G175600 chr2B 744556261 744556978 717 True 870.000000 870 88.435000 2054 2787 1 chr2B.!!$R1 733
21 TraesCS7D01G175600 chr2B 148866851 148867627 776 False 773.000000 773 84.615000 1972 2787 1 chr2B.!!$F2 815

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
940 941 1.337817 CCGAGCGCGATATGTAGCAC 61.338 60.0 12.1 0.0 40.82 4.40 F
1728 1770 0.109781 CAACGCTTGGAAACCCATCG 60.110 55.0 0.0 0.0 36.65 3.84 F
2681 2736 0.254462 GAAGAGAGGGGGCTTGAAGG 59.746 60.0 0.0 0.0 0.00 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2918 4548 0.034896 TCCGGCTGGAACTCTGTTTC 59.965 55.0 13.31 0.0 42.85 2.78 R
3071 4701 0.394216 CCCGCCTCAATGACATTCCA 60.394 55.0 0.00 0.0 0.00 3.53 R
4109 8020 0.464452 GCCCTATTGGTGTCGCTACT 59.536 55.0 0.00 0.0 36.04 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
320 321 2.289565 CCGTTTCCTTCCTCTAATGGC 58.710 52.381 0.00 0.00 0.00 4.40
351 352 9.838975 CACATATTTTAGTTGCTGTTGATTACA 57.161 29.630 0.00 0.00 34.95 2.41
424 425 9.050601 CACCTCTATTAAGATGCTTAAAGAAGG 57.949 37.037 15.66 15.66 32.84 3.46
560 561 3.184382 TCTCCTTATCACCCACAGTCA 57.816 47.619 0.00 0.00 0.00 3.41
586 587 6.929606 AGTGGTCAAGTAGAATTGAGTAACAC 59.070 38.462 0.00 1.83 39.78 3.32
612 613 8.553696 CAGAGCTCAAATTAATTTTGCAAAAGT 58.446 29.630 27.08 26.48 43.68 2.66
746 747 4.762251 GGAAAAGCATGTCACTTACCTCTT 59.238 41.667 0.00 0.00 0.00 2.85
882 883 5.567423 GCCTATGAGAATGCCAAGTTGTTTT 60.567 40.000 1.45 0.00 0.00 2.43
883 884 5.865552 CCTATGAGAATGCCAAGTTGTTTTG 59.134 40.000 1.45 0.00 0.00 2.44
895 896 6.105657 CAAGTTGTTTTGGACCAAAATCAC 57.894 37.500 30.08 26.60 43.66 3.06
896 897 5.675684 AGTTGTTTTGGACCAAAATCACT 57.324 34.783 30.08 27.95 43.66 3.41
899 900 8.472007 AGTTGTTTTGGACCAAAATCACTATA 57.528 30.769 30.08 14.52 43.66 1.31
901 902 9.139174 GTTGTTTTGGACCAAAATCACTATATG 57.861 33.333 30.08 0.00 43.66 1.78
902 903 8.415950 TGTTTTGGACCAAAATCACTATATGT 57.584 30.769 30.08 0.00 43.66 2.29
907 908 6.765989 TGGACCAAAATCACTATATGTAGCAC 59.234 38.462 0.00 0.00 0.00 4.40
908 909 6.073765 GGACCAAAATCACTATATGTAGCACG 60.074 42.308 0.00 0.00 0.00 5.34
919 920 2.526304 TGTAGCACGATATGAAGGCC 57.474 50.000 0.00 0.00 0.00 5.19
940 941 1.337817 CCGAGCGCGATATGTAGCAC 61.338 60.000 12.10 0.00 40.82 4.40
976 977 9.944376 ATTATGCCGATCCATATGTATATAACC 57.056 33.333 1.24 0.00 0.00 2.85
981 982 7.387948 GCCGATCCATATGTATATAACCATTCC 59.612 40.741 1.24 0.00 0.00 3.01
1075 1090 4.202131 GGTTCGGCTAGAGTTGCTATAGTT 60.202 45.833 0.84 0.00 29.14 2.24
1077 1092 5.184340 TCGGCTAGAGTTGCTATAGTTTC 57.816 43.478 0.84 0.00 29.14 2.78
1098 1113 2.045340 GGTAATGCCTGCCACGGT 60.045 61.111 0.00 0.00 0.00 4.83
1184 1206 5.834742 TCTTTTCCTGCCATTATGCATATGT 59.165 36.000 7.36 0.00 41.16 2.29
1312 1338 2.489971 CACCTACCGTTGAAAGCAAGA 58.510 47.619 0.00 0.00 34.01 3.02
1331 1357 5.322310 CAAGAAACAGAGCATCATTCGAAG 58.678 41.667 3.35 0.00 37.82 3.79
1406 1442 1.063806 CGCATAGCTTCATACTCCGC 58.936 55.000 0.00 0.00 0.00 5.54
1416 1452 2.403259 TCATACTCCGCATATTGCACG 58.597 47.619 0.00 0.00 45.36 5.34
1575 1617 2.813179 CGCTCCTACGGCAATGTGC 61.813 63.158 0.00 0.00 44.08 4.57
1601 1643 4.424430 CACGCGGCGTTGCACTAC 62.424 66.667 27.24 0.00 38.32 2.73
1603 1645 3.838795 CGCGGCGTTGCACTACTC 61.839 66.667 15.36 0.00 34.15 2.59
1604 1646 3.838795 GCGGCGTTGCACTACTCG 61.839 66.667 9.37 0.00 34.15 4.18
1605 1647 3.838795 CGGCGTTGCACTACTCGC 61.839 66.667 0.00 9.70 46.42 5.03
1607 1649 2.772189 GCGTTGCACTACTCGCAG 59.228 61.111 12.18 0.00 46.40 5.18
1608 1650 2.772189 CGTTGCACTACTCGCAGC 59.228 61.111 0.00 0.00 41.18 5.25
1609 1651 2.772189 GTTGCACTACTCGCAGCG 59.228 61.111 9.06 9.06 41.18 5.18
1610 1652 2.432456 TTGCACTACTCGCAGCGG 60.432 61.111 16.42 8.40 41.18 5.52
1611 1653 3.932580 TTGCACTACTCGCAGCGGG 62.933 63.158 14.82 14.82 41.18 6.13
1621 1663 3.793144 GCAGCGGGCGACAAAGAG 61.793 66.667 0.00 0.00 0.00 2.85
1622 1664 3.793144 CAGCGGGCGACAAAGAGC 61.793 66.667 0.00 0.00 0.00 4.09
1628 1670 3.793144 GCGACAAAGAGCGGCCTG 61.793 66.667 0.00 0.00 0.00 4.85
1686 1728 2.482494 AGGGGTTTCCTGATACTCCTG 58.518 52.381 8.19 0.00 46.07 3.86
1687 1729 1.490910 GGGGTTTCCTGATACTCCTGG 59.509 57.143 0.00 0.00 31.24 4.45
1688 1730 1.134068 GGGTTTCCTGATACTCCTGGC 60.134 57.143 0.00 0.00 0.00 4.85
1689 1731 1.559682 GGTTTCCTGATACTCCTGGCA 59.440 52.381 0.00 0.00 0.00 4.92
1690 1732 2.173569 GGTTTCCTGATACTCCTGGCAT 59.826 50.000 0.00 0.00 0.00 4.40
1691 1733 3.471680 GTTTCCTGATACTCCTGGCATC 58.528 50.000 0.00 0.00 0.00 3.91
1692 1734 2.783379 TCCTGATACTCCTGGCATCT 57.217 50.000 0.00 0.00 0.00 2.90
1693 1735 2.323599 TCCTGATACTCCTGGCATCTG 58.676 52.381 0.00 0.00 0.00 2.90
1694 1736 1.347050 CCTGATACTCCTGGCATCTGG 59.653 57.143 11.44 11.44 33.30 3.86
1695 1737 2.323599 CTGATACTCCTGGCATCTGGA 58.676 52.381 0.00 0.00 38.46 3.86
1696 1738 2.036992 CTGATACTCCTGGCATCTGGAC 59.963 54.545 0.00 0.00 36.30 4.02
1697 1739 1.000283 GATACTCCTGGCATCTGGACG 60.000 57.143 0.00 0.00 36.30 4.79
1698 1740 1.676678 TACTCCTGGCATCTGGACGC 61.677 60.000 0.00 0.00 36.30 5.19
1699 1741 3.002583 TCCTGGCATCTGGACGCA 61.003 61.111 0.00 0.00 36.30 5.24
1700 1742 2.513204 CCTGGCATCTGGACGCAG 60.513 66.667 0.00 0.00 34.32 5.18
1704 1746 3.873883 GCATCTGGACGCAGCAGC 61.874 66.667 0.00 0.00 37.42 5.25
1705 1747 2.435410 CATCTGGACGCAGCAGCA 60.435 61.111 0.82 0.00 42.27 4.41
1707 1749 3.677284 ATCTGGACGCAGCAGCAGG 62.677 63.158 0.82 0.00 42.27 4.85
1708 1750 4.694233 CTGGACGCAGCAGCAGGT 62.694 66.667 0.82 0.00 42.27 4.00
1709 1751 4.687215 TGGACGCAGCAGCAGGTC 62.687 66.667 0.82 1.11 42.27 3.85
1711 1753 2.666190 GACGCAGCAGCAGGTCAA 60.666 61.111 0.82 0.00 42.27 3.18
1712 1754 2.959357 GACGCAGCAGCAGGTCAAC 61.959 63.158 0.82 0.00 42.27 3.18
1713 1755 4.081030 CGCAGCAGCAGGTCAACG 62.081 66.667 0.82 0.00 42.27 4.10
1715 1757 2.667536 CAGCAGCAGGTCAACGCT 60.668 61.111 0.00 0.00 39.66 5.07
1718 1760 2.949106 CAGCAGGTCAACGCTTGG 59.051 61.111 0.00 0.00 35.96 3.61
1720 1762 1.148273 AGCAGGTCAACGCTTGGAA 59.852 52.632 0.00 0.00 33.81 3.53
1721 1763 0.465460 AGCAGGTCAACGCTTGGAAA 60.465 50.000 0.00 0.00 33.81 3.13
1722 1764 0.317854 GCAGGTCAACGCTTGGAAAC 60.318 55.000 0.00 0.00 0.00 2.78
1723 1765 0.310854 CAGGTCAACGCTTGGAAACC 59.689 55.000 0.00 0.00 0.00 3.27
1725 1767 1.104577 GGTCAACGCTTGGAAACCCA 61.105 55.000 0.00 0.00 0.00 4.51
1726 1768 0.958822 GTCAACGCTTGGAAACCCAT 59.041 50.000 0.00 0.00 32.92 4.00
1728 1770 0.109781 CAACGCTTGGAAACCCATCG 60.110 55.000 0.00 0.00 36.65 3.84
1729 1771 0.536460 AACGCTTGGAAACCCATCGT 60.536 50.000 0.00 0.00 41.59 3.73
1730 1772 0.536460 ACGCTTGGAAACCCATCGTT 60.536 50.000 0.00 0.00 38.92 3.85
1732 1774 1.807742 CGCTTGGAAACCCATCGTTTA 59.192 47.619 0.00 0.00 44.88 2.01
1737 1779 1.064952 GGAAACCCATCGTTTATGCCG 59.935 52.381 0.00 0.00 44.88 5.69
1738 1780 1.741145 GAAACCCATCGTTTATGCCGT 59.259 47.619 0.00 0.00 44.88 5.68
1739 1781 1.375551 AACCCATCGTTTATGCCGTC 58.624 50.000 0.00 0.00 33.92 4.79
1740 1782 0.463116 ACCCATCGTTTATGCCGTCC 60.463 55.000 0.00 0.00 33.92 4.79
1741 1783 0.462937 CCCATCGTTTATGCCGTCCA 60.463 55.000 0.00 0.00 33.92 4.02
1742 1784 0.655733 CCATCGTTTATGCCGTCCAC 59.344 55.000 0.00 0.00 33.92 4.02
1743 1785 1.364721 CATCGTTTATGCCGTCCACA 58.635 50.000 0.00 0.00 0.00 4.17
1745 1787 1.017177 TCGTTTATGCCGTCCACAGC 61.017 55.000 0.00 0.00 0.00 4.40
1746 1788 1.295357 CGTTTATGCCGTCCACAGCA 61.295 55.000 0.00 0.00 44.45 4.41
1747 1789 0.878416 GTTTATGCCGTCCACAGCAA 59.122 50.000 0.00 0.00 43.36 3.91
1748 1790 1.135689 GTTTATGCCGTCCACAGCAAG 60.136 52.381 0.00 0.00 43.36 4.01
1749 1791 0.676466 TTATGCCGTCCACAGCAAGG 60.676 55.000 0.00 0.00 43.36 3.61
1761 1803 3.042560 GCAAGGGCGCTCTGTTTT 58.957 55.556 12.52 0.00 0.00 2.43
1763 1805 0.664466 GCAAGGGCGCTCTGTTTTTC 60.664 55.000 12.52 0.00 0.00 2.29
1764 1806 0.954452 CAAGGGCGCTCTGTTTTTCT 59.046 50.000 12.52 0.00 0.00 2.52
1765 1807 0.954452 AAGGGCGCTCTGTTTTTCTG 59.046 50.000 12.52 0.00 0.00 3.02
1767 1809 1.081175 GGCGCTCTGTTTTTCTGCC 60.081 57.895 7.64 0.00 0.00 4.85
1768 1810 1.654220 GCGCTCTGTTTTTCTGCCA 59.346 52.632 0.00 0.00 0.00 4.92
1770 1812 1.229428 CGCTCTGTTTTTCTGCCAGA 58.771 50.000 0.00 0.00 34.28 3.86
1771 1813 1.808945 CGCTCTGTTTTTCTGCCAGAT 59.191 47.619 0.00 0.00 34.90 2.90
1772 1814 2.227388 CGCTCTGTTTTTCTGCCAGATT 59.773 45.455 0.00 0.00 34.90 2.40
1773 1815 3.304928 CGCTCTGTTTTTCTGCCAGATTT 60.305 43.478 0.00 0.00 34.90 2.17
1774 1816 3.985925 GCTCTGTTTTTCTGCCAGATTTG 59.014 43.478 0.00 0.00 34.90 2.32
1783 1825 3.814268 CCAGATTTGGCACGCCGG 61.814 66.667 0.00 0.00 37.73 6.13
1786 1828 2.040544 AGATTTGGCACGCCGGAAG 61.041 57.895 5.05 0.00 39.42 3.46
2074 2116 1.162181 CGCTCCAATGCATCACCGAT 61.162 55.000 0.00 0.00 0.00 4.18
2273 2318 2.961768 CCCCGTCACAACAATGGC 59.038 61.111 0.00 0.00 0.00 4.40
2566 2618 1.381327 CCCTCCCGGTTCTCAGCTA 60.381 63.158 0.00 0.00 0.00 3.32
2655 2709 4.168088 AGGAAAAGGGGAAAAGAGAAGACA 59.832 41.667 0.00 0.00 0.00 3.41
2681 2736 0.254462 GAAGAGAGGGGGCTTGAAGG 59.746 60.000 0.00 0.00 0.00 3.46
2787 2843 4.213482 CCGGATGAAATAGATCGTTTTCCC 59.787 45.833 16.10 11.72 32.14 3.97
2788 2844 5.057149 CGGATGAAATAGATCGTTTTCCCT 58.943 41.667 16.10 7.61 32.14 4.20
2789 2845 5.177696 CGGATGAAATAGATCGTTTTCCCTC 59.822 44.000 16.10 13.26 32.14 4.30
2790 2846 5.470437 GGATGAAATAGATCGTTTTCCCTCC 59.530 44.000 16.10 16.54 32.14 4.30
2791 2847 5.693769 TGAAATAGATCGTTTTCCCTCCT 57.306 39.130 16.10 0.00 32.14 3.69
2792 2848 5.671493 TGAAATAGATCGTTTTCCCTCCTC 58.329 41.667 16.10 0.00 32.14 3.71
2793 2849 5.188948 TGAAATAGATCGTTTTCCCTCCTCA 59.811 40.000 16.10 1.01 32.14 3.86
2794 2850 5.693769 AATAGATCGTTTTCCCTCCTCAA 57.306 39.130 0.00 0.00 0.00 3.02
2796 2852 3.676093 AGATCGTTTTCCCTCCTCAAAC 58.324 45.455 0.00 0.00 0.00 2.93
2798 2854 0.872388 CGTTTTCCCTCCTCAAACGG 59.128 55.000 8.21 0.00 45.72 4.44
2799 2855 1.812708 CGTTTTCCCTCCTCAAACGGT 60.813 52.381 8.21 0.00 45.72 4.83
2800 2856 2.548493 CGTTTTCCCTCCTCAAACGGTA 60.548 50.000 8.21 0.00 45.72 4.02
2801 2857 3.479489 GTTTTCCCTCCTCAAACGGTAA 58.521 45.455 0.00 0.00 0.00 2.85
2803 2859 2.019807 TCCCTCCTCAAACGGTAAGT 57.980 50.000 0.00 0.00 0.00 2.24
2804 2860 2.332117 TCCCTCCTCAAACGGTAAGTT 58.668 47.619 0.00 0.00 46.76 2.66
2808 2864 3.512724 CCTCCTCAAACGGTAAGTTAGGA 59.487 47.826 0.00 0.00 42.38 2.94
2809 2865 4.020839 CCTCCTCAAACGGTAAGTTAGGAA 60.021 45.833 4.66 0.00 43.36 3.36
2810 2866 5.338137 CCTCCTCAAACGGTAAGTTAGGAAT 60.338 44.000 4.66 0.00 43.36 3.01
2811 2867 5.727434 TCCTCAAACGGTAAGTTAGGAATC 58.273 41.667 1.31 0.00 41.94 2.52
2812 2868 4.874396 CCTCAAACGGTAAGTTAGGAATCC 59.126 45.833 0.00 0.00 43.37 3.01
2814 2870 6.057321 TCAAACGGTAAGTTAGGAATCCAT 57.943 37.500 0.61 0.00 43.37 3.41
2815 2871 5.878116 TCAAACGGTAAGTTAGGAATCCATG 59.122 40.000 0.61 0.00 43.37 3.66
2816 2872 5.687166 AACGGTAAGTTAGGAATCCATGA 57.313 39.130 0.61 0.00 42.14 3.07
2817 2873 5.019785 ACGGTAAGTTAGGAATCCATGAC 57.980 43.478 0.61 0.00 0.00 3.06
2818 2874 4.468510 ACGGTAAGTTAGGAATCCATGACA 59.531 41.667 0.61 0.00 0.00 3.58
2819 2875 5.130477 ACGGTAAGTTAGGAATCCATGACAT 59.870 40.000 0.61 0.00 0.00 3.06
2821 2877 6.542370 CGGTAAGTTAGGAATCCATGACATTT 59.458 38.462 0.61 0.00 0.00 2.32
2822 2878 7.067008 CGGTAAGTTAGGAATCCATGACATTTT 59.933 37.037 0.61 0.00 0.00 1.82
2823 2879 8.190784 GGTAAGTTAGGAATCCATGACATTTTG 58.809 37.037 0.61 0.00 0.00 2.44
2824 2880 7.781324 AAGTTAGGAATCCATGACATTTTGT 57.219 32.000 0.61 0.00 0.00 2.83
2826 2882 6.721208 AGTTAGGAATCCATGACATTTTGTGT 59.279 34.615 0.61 0.00 45.83 3.72
2828 2884 5.786311 AGGAATCCATGACATTTTGTGTTG 58.214 37.500 0.61 0.00 42.36 3.33
2829 2885 5.539574 AGGAATCCATGACATTTTGTGTTGA 59.460 36.000 0.61 0.00 42.36 3.18
2831 2887 7.396907 AGGAATCCATGACATTTTGTGTTGATA 59.603 33.333 0.61 0.00 42.36 2.15
2832 2888 8.034215 GGAATCCATGACATTTTGTGTTGATAA 58.966 33.333 0.00 0.00 42.36 1.75
2833 2889 9.421806 GAATCCATGACATTTTGTGTTGATAAA 57.578 29.630 0.00 0.00 42.36 1.40
2835 2891 7.950512 TCCATGACATTTTGTGTTGATAAACT 58.049 30.769 0.00 0.00 42.36 2.66
2836 2892 7.866898 TCCATGACATTTTGTGTTGATAAACTG 59.133 33.333 0.00 0.00 42.36 3.16
2837 2893 7.652909 CCATGACATTTTGTGTTGATAAACTGT 59.347 33.333 0.00 0.00 42.36 3.55
2838 2894 9.676195 CATGACATTTTGTGTTGATAAACTGTA 57.324 29.630 0.00 0.00 42.36 2.74
2840 2896 8.898761 TGACATTTTGTGTTGATAAACTGTACT 58.101 29.630 0.00 0.00 42.36 2.73
2842 2898 8.898761 ACATTTTGTGTTGATAAACTGTACTGA 58.101 29.630 6.77 0.00 38.01 3.41
2843 2899 9.385902 CATTTTGTGTTGATAAACTGTACTGAG 57.614 33.333 6.77 0.00 0.00 3.35
2844 2900 8.500753 TTTTGTGTTGATAAACTGTACTGAGT 57.499 30.769 6.77 0.00 0.00 3.41
2845 2901 8.500753 TTTGTGTTGATAAACTGTACTGAGTT 57.499 30.769 6.77 0.00 37.81 3.01
2847 2903 6.704493 TGTGTTGATAAACTGTACTGAGTTCC 59.296 38.462 6.77 0.00 35.01 3.62
2848 2904 5.924254 TGTTGATAAACTGTACTGAGTTCCG 59.076 40.000 6.77 0.00 35.01 4.30
2849 2905 5.717078 TGATAAACTGTACTGAGTTCCGT 57.283 39.130 6.77 0.00 35.01 4.69
2850 2906 5.466819 TGATAAACTGTACTGAGTTCCGTG 58.533 41.667 6.77 0.00 35.01 4.94
2851 2907 2.814280 AACTGTACTGAGTTCCGTGG 57.186 50.000 6.77 0.00 29.85 4.94
2853 2909 0.317160 CTGTACTGAGTTCCGTGGCA 59.683 55.000 0.00 0.00 0.00 4.92
2854 2910 0.753867 TGTACTGAGTTCCGTGGCAA 59.246 50.000 0.00 0.00 0.00 4.52
2855 2911 1.139256 TGTACTGAGTTCCGTGGCAAA 59.861 47.619 0.00 0.00 0.00 3.68
2856 2912 2.224426 TGTACTGAGTTCCGTGGCAAAT 60.224 45.455 0.00 0.00 0.00 2.32
2857 2913 1.981256 ACTGAGTTCCGTGGCAAATT 58.019 45.000 0.00 0.00 0.00 1.82
2858 2914 2.306847 ACTGAGTTCCGTGGCAAATTT 58.693 42.857 0.00 0.00 0.00 1.82
2860 2916 3.252458 ACTGAGTTCCGTGGCAAATTTAC 59.748 43.478 0.00 0.00 0.00 2.01
2862 2918 2.817844 GAGTTCCGTGGCAAATTTACCT 59.182 45.455 8.90 0.00 0.00 3.08
2864 2920 2.554893 GTTCCGTGGCAAATTTACCTGA 59.445 45.455 8.90 0.79 0.00 3.86
2865 2921 3.080300 TCCGTGGCAAATTTACCTGAT 57.920 42.857 8.90 0.00 0.00 2.90
2866 2922 3.013921 TCCGTGGCAAATTTACCTGATC 58.986 45.455 8.90 0.00 0.00 2.92
2867 2923 2.099098 CCGTGGCAAATTTACCTGATCC 59.901 50.000 8.90 0.00 0.00 3.36
2868 2924 3.016736 CGTGGCAAATTTACCTGATCCT 58.983 45.455 8.90 0.00 0.00 3.24
2869 2925 4.196193 CGTGGCAAATTTACCTGATCCTA 58.804 43.478 8.90 0.00 0.00 2.94
2871 2927 5.277974 CGTGGCAAATTTACCTGATCCTATG 60.278 44.000 8.90 0.00 0.00 2.23
2872 2928 5.827797 GTGGCAAATTTACCTGATCCTATGA 59.172 40.000 8.90 0.00 0.00 2.15
2873 2929 6.491403 GTGGCAAATTTACCTGATCCTATGAT 59.509 38.462 8.90 0.00 0.00 2.45
2874 2930 7.014615 GTGGCAAATTTACCTGATCCTATGATT 59.985 37.037 8.90 0.00 0.00 2.57
2875 2931 7.564660 TGGCAAATTTACCTGATCCTATGATTT 59.435 33.333 8.90 0.00 0.00 2.17
2876 2932 9.077885 GGCAAATTTACCTGATCCTATGATTTA 57.922 33.333 0.00 0.00 0.00 1.40
2885 2941 8.647796 ACCTGATCCTATGATTTATTTGACGTA 58.352 33.333 0.00 0.00 0.00 3.57
2886 2942 9.489084 CCTGATCCTATGATTTATTTGACGTAA 57.511 33.333 0.00 0.00 0.00 3.18
2898 2954 8.745464 TTTATTTGACGTAACTAATTTTGGGC 57.255 30.769 0.00 0.00 0.00 5.36
2899 2955 6.584185 ATTTGACGTAACTAATTTTGGGCT 57.416 33.333 0.00 0.00 0.00 5.19
2901 2957 4.004982 TGACGTAACTAATTTTGGGCTCC 58.995 43.478 0.00 0.00 0.00 4.70
2918 4548 1.593006 CTCCTGCTTATACCGCAAACG 59.407 52.381 0.00 0.00 36.88 3.60
2963 4593 4.147449 CGCCGATCTCCAGCACCA 62.147 66.667 0.00 0.00 0.00 4.17
2968 4598 1.679944 CCGATCTCCAGCACCAACAAT 60.680 52.381 0.00 0.00 0.00 2.71
2971 4601 2.885135 TCTCCAGCACCAACAATCAT 57.115 45.000 0.00 0.00 0.00 2.45
3044 4674 5.551305 TCATACAGATGAGGTACCATTGG 57.449 43.478 15.94 0.00 37.15 3.16
3046 4676 6.140377 TCATACAGATGAGGTACCATTGGTA 58.860 40.000 15.94 11.62 37.15 3.25
3052 4682 6.323996 CAGATGAGGTACCATTGGTAGTAGAA 59.676 42.308 15.94 2.23 39.02 2.10
3071 4701 2.740714 GATTTCAGACGCGCCGCTT 61.741 57.895 5.73 0.00 0.00 4.68
3113 4743 4.074970 GTTTGATGGTGTTGAGATCCACT 58.925 43.478 0.00 0.00 33.91 4.00
3167 4797 4.562789 TGAAAGATAGCTCAAACGATCGTG 59.437 41.667 23.51 10.66 0.00 4.35
3324 4954 3.885724 TTCTAATCCACATGTGCTCGA 57.114 42.857 20.81 12.69 0.00 4.04
3429 5059 0.535780 CGCATGCAGATACCCCATGT 60.536 55.000 19.57 0.00 38.79 3.21
3459 5089 4.157105 GCCCTTTAGGAAAGCATTTAACGA 59.843 41.667 0.00 0.00 39.27 3.85
3564 7456 4.413520 TGGGAGGCTATTTCTTGCTAATCT 59.586 41.667 0.00 0.00 0.00 2.40
3571 7463 7.562821 AGGCTATTTCTTGCTAATCTGGATTTT 59.437 33.333 1.01 0.00 32.50 1.82
3621 7513 2.569853 TGAACAAGTATGACCGGTCCAT 59.430 45.455 31.19 24.12 0.00 3.41
3622 7514 2.691409 ACAAGTATGACCGGTCCATG 57.309 50.000 31.19 22.24 0.00 3.66
3630 7522 2.184533 TGACCGGTCCATGTTCTACAT 58.815 47.619 31.19 0.00 39.91 2.29
3743 7644 6.370442 TGTGGTTCACTTATGTAGTATGCAAC 59.630 38.462 0.00 0.00 34.56 4.17
3794 7699 8.924691 ACATGTGCATTGTATAATTTTCACAAC 58.075 29.630 0.00 0.00 35.17 3.32
3927 7835 9.638239 TTCTTCATTTTGAAAATAAATCCGAGG 57.362 29.630 2.42 0.00 35.73 4.63
3930 7838 7.543756 TCATTTTGAAAATAAATCCGAGGGAC 58.456 34.615 2.42 0.00 32.98 4.46
4010 7919 2.687935 GTTCTTGAAGTGGTGGCTTTGA 59.312 45.455 0.00 0.00 0.00 2.69
4109 8020 3.411808 CGTAAGCACTTCCGTAGCA 57.588 52.632 0.00 0.00 0.00 3.49
4153 8064 5.611374 TCTCGATTCCCATATTTCTTCCAC 58.389 41.667 0.00 0.00 0.00 4.02
4209 8122 7.554118 TGCATTGCTTAGCTAGAAATCTAGTTT 59.446 33.333 16.61 9.52 45.85 2.66
4241 8154 6.526325 CGTAGCTATACATCTTCTCATCTTGC 59.474 42.308 0.00 0.00 31.76 4.01
4251 8164 0.530211 CTCATCTTGCGAGGAGGCAG 60.530 60.000 0.00 0.00 44.94 4.85
4323 8237 5.064558 GTCACGAATCATCTAGTCTAGGGA 58.935 45.833 7.05 5.94 0.00 4.20
4487 8402 6.689177 GCCTAACAATTGCTACTCCCTCTATT 60.689 42.308 5.05 0.00 0.00 1.73
4499 8414 5.731924 ACTCCCTCTATTCCAGTGGATAAT 58.268 41.667 14.00 7.17 39.86 1.28
4557 8472 6.909076 AGCATATTGAAGGAGAAGGAGAAAT 58.091 36.000 0.00 0.00 0.00 2.17
4567 8530 5.014544 AGGAGAAGGAGAAATTGGACATCAA 59.985 40.000 0.00 0.00 40.01 2.57
4573 8536 6.192773 AGGAGAAATTGGACATCAATCACAT 58.807 36.000 0.00 0.00 44.68 3.21
4576 8539 6.860080 AGAAATTGGACATCAATCACATCAC 58.140 36.000 0.00 0.00 44.68 3.06
4634 8597 2.480555 CGGACATTCGCAACCAGC 59.519 61.111 0.00 0.00 40.87 4.85
4638 8601 1.438651 GACATTCGCAACCAGCACTA 58.561 50.000 0.00 0.00 46.13 2.74
4642 8605 1.837538 TTCGCAACCAGCACTAACGC 61.838 55.000 0.00 0.00 46.13 4.84
4643 8606 2.603247 CGCAACCAGCACTAACGCA 61.603 57.895 0.00 0.00 46.13 5.24
4675 8638 0.101759 TTACGATAGCGCAGTCCACC 59.898 55.000 11.47 0.00 42.48 4.61
4725 8688 1.972223 CACCCTGTCGACGACCTCT 60.972 63.158 24.33 2.37 0.00 3.69
4734 8697 3.412879 GACGACCTCTACAGCGGCC 62.413 68.421 0.00 0.00 0.00 6.13
4740 8703 2.920384 TCTACAGCGGCCACCACA 60.920 61.111 2.24 0.00 0.00 4.17
4796 8759 4.577834 ATTTTCGGACCATGTCGTTTTT 57.422 36.364 0.00 0.00 32.65 1.94
4810 8773 4.632251 TGTCGTTTTTGCAGAGTACAAAGA 59.368 37.500 0.00 0.00 38.20 2.52
4816 8779 3.138884 TGCAGAGTACAAAGAATGGCA 57.861 42.857 0.00 0.00 0.00 4.92
4849 8812 3.428452 CCATGGATGATGAGTTGTTGTGC 60.428 47.826 5.56 0.00 33.31 4.57
4861 8824 1.725625 GTTGTGCGATGCGTGGTTG 60.726 57.895 0.00 0.00 0.00 3.77
4870 8833 2.125269 GCGTGGTTGGCCGTATCT 60.125 61.111 0.00 0.00 37.67 1.98
4880 8843 1.557371 TGGCCGTATCTGTGGATTTCA 59.443 47.619 0.00 0.00 33.71 2.69
4898 8861 1.461075 ATAGGCAGGAGCAGAGGGG 60.461 63.158 0.00 0.00 44.61 4.79
4938 8901 2.158143 GCACGAATCATTTCACGAACG 58.842 47.619 0.00 0.00 0.00 3.95
4950 8913 1.937223 TCACGAACGAAAGCACATTGT 59.063 42.857 0.14 0.00 0.00 2.71
4994 8957 3.490933 CCATGATCGTAATGTGAGGTCGT 60.491 47.826 0.00 0.00 0.00 4.34
4995 8958 3.861276 TGATCGTAATGTGAGGTCGTT 57.139 42.857 0.00 0.00 0.00 3.85
4996 8959 4.968812 TGATCGTAATGTGAGGTCGTTA 57.031 40.909 0.00 0.00 0.00 3.18
4997 8960 5.313520 TGATCGTAATGTGAGGTCGTTAA 57.686 39.130 0.00 0.00 0.00 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 0.601558 AGTGACACGTGCGTAGGATT 59.398 50.000 17.22 0.00 0.00 3.01
73 74 1.920574 CATAAGCTTCGGAGTGACACG 59.079 52.381 0.00 0.00 0.00 4.49
351 352 9.275572 TGGAATAGTTTCTACCCACTTACTAAT 57.724 33.333 0.00 0.00 32.16 1.73
355 356 7.392418 AGTTGGAATAGTTTCTACCCACTTAC 58.608 38.462 0.00 0.00 32.16 2.34
560 561 7.441458 GTGTTACTCAATTCTACTTGACCACTT 59.559 37.037 0.00 0.00 31.98 3.16
746 747 6.998074 CCCAATATGCCTTATGTTCTAGTTCA 59.002 38.462 0.00 0.00 0.00 3.18
882 883 6.765989 GTGCTACATATAGTGATTTTGGTCCA 59.234 38.462 0.00 0.00 0.00 4.02
883 884 6.073765 CGTGCTACATATAGTGATTTTGGTCC 60.074 42.308 0.00 0.00 0.00 4.46
884 885 6.700081 TCGTGCTACATATAGTGATTTTGGTC 59.300 38.462 0.00 0.00 0.00 4.02
885 886 6.578944 TCGTGCTACATATAGTGATTTTGGT 58.421 36.000 0.00 0.00 0.00 3.67
890 891 9.794685 CTTCATATCGTGCTACATATAGTGATT 57.205 33.333 0.00 0.00 0.00 2.57
891 892 8.409371 CCTTCATATCGTGCTACATATAGTGAT 58.591 37.037 0.00 0.00 0.00 3.06
892 893 7.628580 GCCTTCATATCGTGCTACATATAGTGA 60.629 40.741 0.00 0.00 0.00 3.41
893 894 6.473778 GCCTTCATATCGTGCTACATATAGTG 59.526 42.308 0.00 0.00 0.00 2.74
895 896 5.980116 GGCCTTCATATCGTGCTACATATAG 59.020 44.000 0.00 0.00 0.00 1.31
896 897 5.420739 TGGCCTTCATATCGTGCTACATATA 59.579 40.000 3.32 0.00 0.00 0.86
899 900 2.368548 TGGCCTTCATATCGTGCTACAT 59.631 45.455 3.32 0.00 0.00 2.29
901 902 2.135933 GTGGCCTTCATATCGTGCTAC 58.864 52.381 3.32 0.00 0.00 3.58
902 903 1.070134 GGTGGCCTTCATATCGTGCTA 59.930 52.381 3.32 0.00 0.00 3.49
904 905 1.498865 CGGTGGCCTTCATATCGTGC 61.499 60.000 3.32 0.00 0.00 5.34
907 908 0.946221 GCTCGGTGGCCTTCATATCG 60.946 60.000 3.32 0.00 0.00 2.92
908 909 0.946221 CGCTCGGTGGCCTTCATATC 60.946 60.000 3.32 0.00 0.00 1.63
919 920 1.337817 GCTACATATCGCGCTCGGTG 61.338 60.000 5.56 1.74 36.13 4.94
940 941 3.063997 GGATCGGCATAATTTATGGAGCG 59.936 47.826 16.22 2.26 36.68 5.03
976 977 2.279582 AACGACACTCTAGCGGAATG 57.720 50.000 0.00 0.00 0.00 2.67
981 982 1.719780 GTCCAAAACGACACTCTAGCG 59.280 52.381 0.00 0.00 32.74 4.26
1054 1069 5.589192 GAAACTATAGCAACTCTAGCCGAA 58.411 41.667 0.00 0.00 0.00 4.30
1113 1128 6.404708 TCTTCTGTCCATTCATTCTTGAGAG 58.595 40.000 0.00 0.00 32.27 3.20
1184 1206 8.693625 GTGTATTCTAGAGGCTAGAACCTAAAA 58.306 37.037 16.57 0.00 41.32 1.52
1265 1290 9.673454 GCGGGGTCTTAATAAAACAAAATATAG 57.327 33.333 0.00 0.00 0.00 1.31
1312 1338 4.825422 TCTCTTCGAATGATGCTCTGTTT 58.175 39.130 0.00 0.00 0.00 2.83
1331 1357 2.090400 TGCTTGTGATGTGAGCTCTC 57.910 50.000 16.19 12.36 37.32 3.20
1406 1442 2.076100 ACAGTGTGGTCGTGCAATATG 58.924 47.619 0.00 0.00 0.00 1.78
1416 1452 1.618861 CTTCGATCGACAGTGTGGTC 58.381 55.000 19.26 0.00 34.42 4.02
1585 1627 4.657824 AGTAGTGCAACGCCGCGT 62.658 61.111 13.85 13.85 45.86 6.01
1586 1628 3.838795 GAGTAGTGCAACGCCGCG 61.839 66.667 12.14 12.14 45.86 6.46
1587 1629 3.838795 CGAGTAGTGCAACGCCGC 61.839 66.667 0.00 0.00 45.86 6.53
1588 1630 3.838795 GCGAGTAGTGCAACGCCG 61.839 66.667 10.47 6.98 45.86 6.46
1592 1634 2.730672 CCGCTGCGAGTAGTGCAAC 61.731 63.158 25.45 0.00 42.70 4.17
1593 1635 2.432456 CCGCTGCGAGTAGTGCAA 60.432 61.111 25.45 0.00 42.70 4.08
1594 1636 4.435436 CCCGCTGCGAGTAGTGCA 62.435 66.667 25.45 0.00 40.70 4.57
1604 1646 3.793144 CTCTTTGTCGCCCGCTGC 61.793 66.667 0.00 0.00 0.00 5.25
1605 1647 3.793144 GCTCTTTGTCGCCCGCTG 61.793 66.667 0.00 0.00 0.00 5.18
1611 1653 3.793144 CAGGCCGCTCTTTGTCGC 61.793 66.667 0.00 0.00 0.00 5.19
1612 1654 3.793144 GCAGGCCGCTCTTTGTCG 61.793 66.667 11.61 0.00 37.77 4.35
1637 1679 4.803426 GAGACGCTGGTGGCCTCG 62.803 72.222 3.32 2.25 37.74 4.63
1638 1680 4.459089 GGAGACGCTGGTGGCCTC 62.459 72.222 3.32 0.00 37.74 4.70
1667 1709 1.490910 CCAGGAGTATCAGGAAACCCC 59.509 57.143 0.00 0.00 36.25 4.95
1668 1710 1.134068 GCCAGGAGTATCAGGAAACCC 60.134 57.143 0.00 0.00 36.25 4.11
1670 1712 3.135530 AGATGCCAGGAGTATCAGGAAAC 59.864 47.826 0.00 0.00 39.87 2.78
1671 1713 3.135348 CAGATGCCAGGAGTATCAGGAAA 59.865 47.826 0.00 0.00 39.87 3.13
1673 1715 2.323599 CAGATGCCAGGAGTATCAGGA 58.676 52.381 0.00 0.00 39.87 3.86
1674 1716 1.347050 CCAGATGCCAGGAGTATCAGG 59.653 57.143 0.00 0.00 39.87 3.86
1675 1717 2.036992 GTCCAGATGCCAGGAGTATCAG 59.963 54.545 0.00 0.00 39.87 2.90
1676 1718 2.042464 GTCCAGATGCCAGGAGTATCA 58.958 52.381 0.00 0.00 39.87 2.15
1678 1720 1.043816 CGTCCAGATGCCAGGAGTAT 58.956 55.000 0.00 0.00 33.85 2.12
1680 1722 3.023949 GCGTCCAGATGCCAGGAGT 62.024 63.158 0.09 0.00 37.37 3.85
1681 1723 2.202987 GCGTCCAGATGCCAGGAG 60.203 66.667 0.09 0.00 37.37 3.69
1683 1725 2.513204 CTGCGTCCAGATGCCAGG 60.513 66.667 9.28 0.00 41.77 4.45
1684 1726 3.200593 GCTGCGTCCAGATGCCAG 61.201 66.667 9.28 7.85 41.77 4.85
1686 1728 3.200593 CTGCTGCGTCCAGATGCC 61.201 66.667 9.28 0.00 41.77 4.40
1687 1729 3.873883 GCTGCTGCGTCCAGATGC 61.874 66.667 4.87 4.87 41.77 3.91
1688 1730 2.435410 TGCTGCTGCGTCCAGATG 60.435 61.111 11.21 0.00 41.77 2.90
1689 1731 2.125229 CTGCTGCTGCGTCCAGAT 60.125 61.111 11.21 0.00 41.77 2.90
1690 1732 4.383861 CCTGCTGCTGCGTCCAGA 62.384 66.667 11.21 0.00 41.77 3.86
1691 1733 4.694233 ACCTGCTGCTGCGTCCAG 62.694 66.667 11.21 2.52 43.34 3.86
1692 1734 4.687215 GACCTGCTGCTGCGTCCA 62.687 66.667 11.21 0.00 43.34 4.02
1693 1735 4.687215 TGACCTGCTGCTGCGTCC 62.687 66.667 16.83 5.87 43.34 4.79
1694 1736 2.666190 TTGACCTGCTGCTGCGTC 60.666 61.111 11.21 12.84 43.34 5.19
1695 1737 2.974698 GTTGACCTGCTGCTGCGT 60.975 61.111 11.21 3.42 43.34 5.24
1696 1738 4.081030 CGTTGACCTGCTGCTGCG 62.081 66.667 11.21 5.84 43.34 5.18
1697 1739 4.395583 GCGTTGACCTGCTGCTGC 62.396 66.667 8.89 8.89 40.20 5.25
1698 1740 2.256591 AAGCGTTGACCTGCTGCTG 61.257 57.895 0.00 0.00 41.46 4.41
1699 1741 2.111878 AAGCGTTGACCTGCTGCT 59.888 55.556 0.00 0.00 41.46 4.24
1700 1742 2.253452 CAAGCGTTGACCTGCTGC 59.747 61.111 0.00 0.00 41.46 5.25
1704 1746 0.310854 GGTTTCCAAGCGTTGACCTG 59.689 55.000 0.15 0.00 0.00 4.00
1705 1747 0.822121 GGGTTTCCAAGCGTTGACCT 60.822 55.000 0.00 0.00 0.00 3.85
1707 1749 2.410466 TGGGTTTCCAAGCGTTGAC 58.590 52.632 0.15 0.00 40.73 3.18
1708 1750 4.988744 TGGGTTTCCAAGCGTTGA 57.011 50.000 0.15 0.00 40.73 3.18
1712 1754 0.596082 AAACGATGGGTTTCCAAGCG 59.404 50.000 0.00 0.00 45.60 4.68
1713 1755 3.769536 CATAAACGATGGGTTTCCAAGC 58.230 45.455 0.00 0.00 45.60 4.01
1715 1757 2.494073 GGCATAAACGATGGGTTTCCAA 59.506 45.455 0.00 0.00 45.60 3.53
1718 1760 1.741145 ACGGCATAAACGATGGGTTTC 59.259 47.619 0.00 0.00 45.60 2.78
1720 1762 1.375551 GACGGCATAAACGATGGGTT 58.624 50.000 0.00 0.00 41.76 4.11
1721 1763 0.463116 GGACGGCATAAACGATGGGT 60.463 55.000 0.00 0.00 35.91 4.51
1722 1764 0.462937 TGGACGGCATAAACGATGGG 60.463 55.000 0.00 0.00 35.91 4.00
1723 1765 0.655733 GTGGACGGCATAAACGATGG 59.344 55.000 0.00 0.00 35.91 3.51
1725 1767 1.651987 CTGTGGACGGCATAAACGAT 58.348 50.000 0.00 0.00 34.93 3.73
1726 1768 3.131326 CTGTGGACGGCATAAACGA 57.869 52.632 0.00 0.00 34.93 3.85
1745 1787 0.954452 AGAAAAACAGAGCGCCCTTG 59.046 50.000 2.29 2.28 0.00 3.61
1746 1788 0.954452 CAGAAAAACAGAGCGCCCTT 59.046 50.000 2.29 0.00 0.00 3.95
1747 1789 1.518903 GCAGAAAAACAGAGCGCCCT 61.519 55.000 2.29 0.00 0.00 5.19
1748 1790 1.081175 GCAGAAAAACAGAGCGCCC 60.081 57.895 2.29 0.00 0.00 6.13
1749 1791 1.081175 GGCAGAAAAACAGAGCGCC 60.081 57.895 2.29 0.00 0.00 6.53
1751 1793 1.229428 TCTGGCAGAAAAACAGAGCG 58.771 50.000 16.28 0.00 36.41 5.03
1752 1794 3.930634 AATCTGGCAGAAAAACAGAGC 57.069 42.857 22.84 0.00 43.67 4.09
1754 1796 4.589216 CCAAATCTGGCAGAAAAACAGA 57.411 40.909 22.84 0.00 44.44 3.41
1767 1809 2.257286 CTTCCGGCGTGCCAAATCTG 62.257 60.000 12.06 0.00 35.37 2.90
1768 1810 2.033448 TTCCGGCGTGCCAAATCT 59.967 55.556 12.06 0.00 35.37 2.40
1770 1812 3.061848 CCTTCCGGCGTGCCAAAT 61.062 61.111 12.06 0.00 35.37 2.32
1776 1818 4.452733 GGAGACCCTTCCGGCGTG 62.453 72.222 6.01 0.00 33.26 5.34
1777 1819 4.698625 AGGAGACCCTTCCGGCGT 62.699 66.667 6.01 0.00 40.78 5.68
1778 1820 3.839432 GAGGAGACCCTTCCGGCG 61.839 72.222 0.00 0.00 44.53 6.46
1779 1821 1.838073 TTTGAGGAGACCCTTCCGGC 61.838 60.000 0.00 0.00 44.53 6.13
1780 1822 0.250513 CTTTGAGGAGACCCTTCCGG 59.749 60.000 0.00 0.00 44.53 5.14
1781 1823 0.250513 CCTTTGAGGAGACCCTTCCG 59.749 60.000 0.00 0.00 44.53 4.30
1782 1824 0.034960 GCCTTTGAGGAGACCCTTCC 60.035 60.000 0.00 0.00 44.53 3.46
1783 1825 0.391793 CGCCTTTGAGGAGACCCTTC 60.392 60.000 0.00 0.00 44.53 3.46
1786 1828 2.269241 CCGCCTTTGAGGAGACCC 59.731 66.667 0.00 0.00 37.36 4.46
1787 1829 1.614241 TAGCCGCCTTTGAGGAGACC 61.614 60.000 0.00 0.00 37.36 3.85
1788 1830 0.460459 GTAGCCGCCTTTGAGGAGAC 60.460 60.000 0.00 0.00 37.36 3.36
1789 1831 0.614979 AGTAGCCGCCTTTGAGGAGA 60.615 55.000 0.00 0.00 37.36 3.71
1790 1832 1.112113 TAGTAGCCGCCTTTGAGGAG 58.888 55.000 0.00 0.00 37.67 3.69
1791 1833 0.822164 GTAGTAGCCGCCTTTGAGGA 59.178 55.000 0.00 0.00 37.67 3.71
1792 1834 0.527817 CGTAGTAGCCGCCTTTGAGG 60.528 60.000 0.00 0.00 38.80 3.86
1793 1835 0.527817 CCGTAGTAGCCGCCTTTGAG 60.528 60.000 0.00 0.00 0.00 3.02
1794 1836 0.966875 TCCGTAGTAGCCGCCTTTGA 60.967 55.000 0.00 0.00 0.00 2.69
1795 1837 0.104304 ATCCGTAGTAGCCGCCTTTG 59.896 55.000 0.00 0.00 0.00 2.77
2050 2092 0.804364 TGATGCATTGGAGCGTTGTC 59.196 50.000 0.00 0.00 37.31 3.18
2273 2318 2.654724 TGCGTTTTTGCAGCAGCG 60.655 55.556 0.00 0.82 46.23 5.18
2598 2650 4.099881 CAGTAGTACTAGAGGAGAGGACGT 59.900 50.000 1.87 0.00 0.00 4.34
2655 2709 0.985490 GCCCCCTCTCTTCTCCACAT 60.985 60.000 0.00 0.00 0.00 3.21
2681 2736 1.405661 CCGCTTCTCCTCCAACCTTAC 60.406 57.143 0.00 0.00 0.00 2.34
2787 2843 4.796038 TCCTAACTTACCGTTTGAGGAG 57.204 45.455 0.00 0.00 36.10 3.69
2788 2844 5.337813 GGATTCCTAACTTACCGTTTGAGGA 60.338 44.000 0.00 0.00 38.17 3.71
2789 2845 4.874396 GGATTCCTAACTTACCGTTTGAGG 59.126 45.833 0.00 0.00 37.05 3.86
2790 2846 5.484715 TGGATTCCTAACTTACCGTTTGAG 58.515 41.667 3.95 0.00 37.05 3.02
2791 2847 5.486735 TGGATTCCTAACTTACCGTTTGA 57.513 39.130 3.95 0.00 37.05 2.69
2792 2848 5.878116 TCATGGATTCCTAACTTACCGTTTG 59.122 40.000 3.95 0.00 37.05 2.93
2793 2849 5.878669 GTCATGGATTCCTAACTTACCGTTT 59.121 40.000 3.95 0.00 37.05 3.60
2794 2850 5.046159 TGTCATGGATTCCTAACTTACCGTT 60.046 40.000 3.95 0.00 39.64 4.44
2796 2852 5.018539 TGTCATGGATTCCTAACTTACCG 57.981 43.478 3.95 0.00 0.00 4.02
2797 2853 7.881775 AAATGTCATGGATTCCTAACTTACC 57.118 36.000 3.95 0.00 0.00 2.85
2798 2854 8.739972 ACAAAATGTCATGGATTCCTAACTTAC 58.260 33.333 3.95 0.00 0.00 2.34
2799 2855 8.739039 CACAAAATGTCATGGATTCCTAACTTA 58.261 33.333 3.95 0.00 0.00 2.24
2800 2856 7.233348 ACACAAAATGTCATGGATTCCTAACTT 59.767 33.333 3.95 0.00 36.54 2.66
2801 2857 6.721208 ACACAAAATGTCATGGATTCCTAACT 59.279 34.615 3.95 0.00 36.54 2.24
2803 2859 7.232330 TCAACACAAAATGTCATGGATTCCTAA 59.768 33.333 3.95 0.00 42.31 2.69
2804 2860 6.718912 TCAACACAAAATGTCATGGATTCCTA 59.281 34.615 3.95 0.00 42.31 2.94
2808 2864 9.206870 GTTTATCAACACAAAATGTCATGGATT 57.793 29.630 0.00 0.00 42.31 3.01
2809 2865 8.587608 AGTTTATCAACACAAAATGTCATGGAT 58.412 29.630 0.00 0.00 42.31 3.41
2810 2866 7.866898 CAGTTTATCAACACAAAATGTCATGGA 59.133 33.333 0.00 0.00 42.31 3.41
2811 2867 7.652909 ACAGTTTATCAACACAAAATGTCATGG 59.347 33.333 0.00 0.00 42.31 3.66
2812 2868 8.578308 ACAGTTTATCAACACAAAATGTCATG 57.422 30.769 0.00 0.00 42.31 3.07
2814 2870 8.898761 AGTACAGTTTATCAACACAAAATGTCA 58.101 29.630 3.75 0.00 42.31 3.58
2815 2871 9.169468 CAGTACAGTTTATCAACACAAAATGTC 57.831 33.333 3.75 0.00 42.31 3.06
2816 2872 8.898761 TCAGTACAGTTTATCAACACAAAATGT 58.101 29.630 0.00 5.62 46.42 2.71
2817 2873 9.385902 CTCAGTACAGTTTATCAACACAAAATG 57.614 33.333 0.00 0.00 36.19 2.32
2818 2874 9.120538 ACTCAGTACAGTTTATCAACACAAAAT 57.879 29.630 0.00 0.00 35.05 1.82
2819 2875 8.500753 ACTCAGTACAGTTTATCAACACAAAA 57.499 30.769 0.00 0.00 35.05 2.44
2821 2877 7.225931 GGAACTCAGTACAGTTTATCAACACAA 59.774 37.037 0.00 0.00 36.71 3.33
2822 2878 6.704493 GGAACTCAGTACAGTTTATCAACACA 59.296 38.462 0.00 0.00 36.71 3.72
2823 2879 6.128902 CGGAACTCAGTACAGTTTATCAACAC 60.129 42.308 0.00 0.00 36.71 3.32
2824 2880 5.924254 CGGAACTCAGTACAGTTTATCAACA 59.076 40.000 0.00 0.00 36.71 3.33
2826 2882 5.924254 CACGGAACTCAGTACAGTTTATCAA 59.076 40.000 0.00 0.00 36.71 2.57
2828 2884 4.863131 CCACGGAACTCAGTACAGTTTATC 59.137 45.833 0.00 0.00 36.71 1.75
2829 2885 4.817517 CCACGGAACTCAGTACAGTTTAT 58.182 43.478 0.00 0.00 36.71 1.40
2831 2887 2.805657 GCCACGGAACTCAGTACAGTTT 60.806 50.000 0.00 0.00 36.71 2.66
2832 2888 1.270147 GCCACGGAACTCAGTACAGTT 60.270 52.381 0.00 0.00 39.43 3.16
2833 2889 0.317479 GCCACGGAACTCAGTACAGT 59.683 55.000 0.00 0.00 0.00 3.55
2835 2891 0.753867 TTGCCACGGAACTCAGTACA 59.246 50.000 0.00 0.00 0.00 2.90
2836 2892 1.873698 TTTGCCACGGAACTCAGTAC 58.126 50.000 0.00 0.00 0.00 2.73
2837 2893 2.851263 ATTTGCCACGGAACTCAGTA 57.149 45.000 0.00 0.00 0.00 2.74
2838 2894 1.981256 AATTTGCCACGGAACTCAGT 58.019 45.000 0.00 0.00 0.00 3.41
2840 2896 2.554893 GGTAAATTTGCCACGGAACTCA 59.445 45.455 19.26 0.00 32.69 3.41
2842 2898 2.556622 CAGGTAAATTTGCCACGGAACT 59.443 45.455 24.85 1.90 35.15 3.01
2843 2899 2.554893 TCAGGTAAATTTGCCACGGAAC 59.445 45.455 24.85 1.77 35.15 3.62
2844 2900 2.865079 TCAGGTAAATTTGCCACGGAA 58.135 42.857 24.85 4.87 35.15 4.30
2845 2901 2.570415 TCAGGTAAATTTGCCACGGA 57.430 45.000 24.85 16.43 35.15 4.69
2847 2903 3.016736 AGGATCAGGTAAATTTGCCACG 58.983 45.455 24.85 16.06 35.15 4.94
2848 2904 5.827797 TCATAGGATCAGGTAAATTTGCCAC 59.172 40.000 24.85 13.47 35.15 5.01
2849 2905 6.012337 TCATAGGATCAGGTAAATTTGCCA 57.988 37.500 24.85 7.84 35.15 4.92
2850 2906 7.530426 AATCATAGGATCAGGTAAATTTGCC 57.470 36.000 16.82 16.82 31.88 4.52
2857 2913 9.489084 CGTCAAATAAATCATAGGATCAGGTAA 57.511 33.333 0.00 0.00 31.88 2.85
2858 2914 8.647796 ACGTCAAATAAATCATAGGATCAGGTA 58.352 33.333 0.00 0.00 31.88 3.08
2860 2916 7.969536 ACGTCAAATAAATCATAGGATCAGG 57.030 36.000 0.00 0.00 31.88 3.86
2872 2928 9.361315 GCCCAAAATTAGTTACGTCAAATAAAT 57.639 29.630 0.00 0.00 31.04 1.40
2873 2929 8.578151 AGCCCAAAATTAGTTACGTCAAATAAA 58.422 29.630 0.00 0.00 31.04 1.40
2874 2930 8.113173 AGCCCAAAATTAGTTACGTCAAATAA 57.887 30.769 0.00 0.00 31.75 1.40
2875 2931 7.148205 GGAGCCCAAAATTAGTTACGTCAAATA 60.148 37.037 0.00 0.00 0.00 1.40
2876 2932 6.349860 GGAGCCCAAAATTAGTTACGTCAAAT 60.350 38.462 0.00 0.00 0.00 2.32
2877 2933 5.048573 GGAGCCCAAAATTAGTTACGTCAAA 60.049 40.000 0.00 0.00 0.00 2.69
2878 2934 4.456566 GGAGCCCAAAATTAGTTACGTCAA 59.543 41.667 0.00 0.00 0.00 3.18
2879 2935 4.004982 GGAGCCCAAAATTAGTTACGTCA 58.995 43.478 0.00 0.00 0.00 4.35
2885 2941 3.175438 AGCAGGAGCCCAAAATTAGTT 57.825 42.857 0.00 0.00 43.56 2.24
2886 2942 2.907458 AGCAGGAGCCCAAAATTAGT 57.093 45.000 0.00 0.00 43.56 2.24
2887 2943 5.241728 GGTATAAGCAGGAGCCCAAAATTAG 59.758 44.000 0.00 0.00 43.56 1.73
2888 2944 5.137551 GGTATAAGCAGGAGCCCAAAATTA 58.862 41.667 0.00 0.00 43.56 1.40
2889 2945 3.960755 GGTATAAGCAGGAGCCCAAAATT 59.039 43.478 0.00 0.00 43.56 1.82
2890 2946 3.566351 GGTATAAGCAGGAGCCCAAAAT 58.434 45.455 0.00 0.00 43.56 1.82
2891 2947 2.682563 CGGTATAAGCAGGAGCCCAAAA 60.683 50.000 0.00 0.00 43.56 2.44
2892 2948 1.134220 CGGTATAAGCAGGAGCCCAAA 60.134 52.381 0.00 0.00 43.56 3.28
2895 2951 1.301795 GCGGTATAAGCAGGAGCCC 60.302 63.158 0.00 0.00 43.56 5.19
2896 2952 0.179056 TTGCGGTATAAGCAGGAGCC 60.179 55.000 4.62 0.00 46.01 4.70
2897 2953 1.330829 GTTTGCGGTATAAGCAGGAGC 59.669 52.381 4.62 0.00 46.01 4.70
2898 2954 1.593006 CGTTTGCGGTATAAGCAGGAG 59.407 52.381 4.62 0.00 46.01 3.69
2899 2955 1.205179 TCGTTTGCGGTATAAGCAGGA 59.795 47.619 4.62 2.53 46.01 3.86
2901 2957 3.120477 TGTTTCGTTTGCGGTATAAGCAG 60.120 43.478 4.62 0.00 46.01 4.24
2918 4548 0.034896 TCCGGCTGGAACTCTGTTTC 59.965 55.000 13.31 0.00 42.85 2.78
2963 4593 3.753272 GCATCAGGCGGTATATGATTGTT 59.247 43.478 0.00 0.00 31.38 2.83
3044 4674 3.482833 GCGCGTCTGAAATCTTCTACTAC 59.517 47.826 8.43 0.00 0.00 2.73
3046 4676 2.531206 GCGCGTCTGAAATCTTCTACT 58.469 47.619 8.43 0.00 0.00 2.57
3052 4682 3.188786 GCGGCGCGTCTGAAATCT 61.189 61.111 19.09 0.00 0.00 2.40
3071 4701 0.394216 CCCGCCTCAATGACATTCCA 60.394 55.000 0.00 0.00 0.00 3.53
3113 4743 2.507484 CAAGAGAAACCCATGTGCTCA 58.493 47.619 0.00 0.00 32.18 4.26
3167 4797 0.745845 CTGCCACCATACCTGTCAGC 60.746 60.000 0.00 0.00 0.00 4.26
3429 5059 3.023832 GCTTTCCTAAAGGGCAATAGCA 58.976 45.455 0.00 0.00 39.75 3.49
3459 5089 0.606944 TCCCGCGGCAATAAAAGTGT 60.607 50.000 22.85 0.00 0.00 3.55
3564 7456 5.129485 AGCTCGAATCTCTTAGGAAAATCCA 59.871 40.000 0.00 0.00 39.61 3.41
3571 7463 5.626142 ACATCTAGCTCGAATCTCTTAGGA 58.374 41.667 0.00 0.00 0.00 2.94
3621 7513 4.901250 TGATAGGATCCTGCATGTAGAACA 59.099 41.667 25.28 3.62 0.00 3.18
3622 7514 5.474578 TGATAGGATCCTGCATGTAGAAC 57.525 43.478 25.28 0.77 0.00 3.01
3630 7522 4.411869 TGTAACCAATGATAGGATCCTGCA 59.588 41.667 25.28 21.13 0.00 4.41
3641 7533 9.125026 GAAAGGATAATCTGTGTAACCAATGAT 57.875 33.333 0.00 0.00 34.36 2.45
3927 7835 6.260050 CCATTACATACTACAACCACATGTCC 59.740 42.308 0.00 0.00 34.75 4.02
3930 7838 7.624360 AACCATTACATACTACAACCACATG 57.376 36.000 0.00 0.00 0.00 3.21
4010 7919 9.833179 ATCCCAATGAATATGGATGAGTTTATT 57.167 29.630 0.00 0.00 40.56 1.40
4109 8020 0.464452 GCCCTATTGGTGTCGCTACT 59.536 55.000 0.00 0.00 36.04 2.57
4153 8064 3.557185 TCAAGAAATGATTGATCGAGCGG 59.443 43.478 0.00 0.00 31.86 5.52
4241 8154 3.376935 AATGGTCGCTGCCTCCTCG 62.377 63.158 8.74 0.00 0.00 4.63
4269 8182 3.939592 GTGGTACTTAAGTCCAATGAGCC 59.060 47.826 21.14 9.72 32.82 4.70
4323 8237 5.699458 CGTGAACTATCTGGTGGTTTAACTT 59.301 40.000 0.00 0.00 30.92 2.66
4487 8402 6.183361 CCTCCTAATGTGAATTATCCACTGGA 60.183 42.308 0.00 0.00 35.66 3.86
4499 8414 3.146066 GTGTTGCACCTCCTAATGTGAA 58.854 45.455 0.00 0.00 34.37 3.18
4557 8472 7.167535 TCTTAAGTGATGTGATTGATGTCCAA 58.832 34.615 1.63 0.00 39.41 3.53
4576 8539 8.778358 GGGTAGCTAAAATGACATCATCTTAAG 58.222 37.037 0.00 0.00 35.10 1.85
4621 8584 1.464023 CGTTAGTGCTGGTTGCGAATG 60.464 52.381 0.00 0.00 46.63 2.67
4622 8585 0.796312 CGTTAGTGCTGGTTGCGAAT 59.204 50.000 0.00 0.00 46.63 3.34
4642 8605 1.083489 TCGTAAAAGGCAAGCGGATG 58.917 50.000 0.00 0.00 0.00 3.51
4643 8606 2.038387 ATCGTAAAAGGCAAGCGGAT 57.962 45.000 0.00 0.00 0.00 4.18
4675 8638 1.376812 GGGTACAAACGGCTCCAGG 60.377 63.158 0.00 0.00 0.00 4.45
4725 8688 4.323477 GGTGTGGTGGCCGCTGTA 62.323 66.667 17.49 0.00 34.70 2.74
4755 8718 5.927281 AATAAGCTCAATGGCATTTGACT 57.073 34.783 10.65 4.94 32.39 3.41
4796 8759 3.076621 CTGCCATTCTTTGTACTCTGCA 58.923 45.455 0.00 0.00 0.00 4.41
4810 8773 2.036256 GTCCAGTGCCCTGCCATT 59.964 61.111 0.00 0.00 37.38 3.16
4816 8779 1.620589 ATCCATGGTCCAGTGCCCT 60.621 57.895 12.58 0.00 0.00 5.19
4824 8787 3.287867 ACAACTCATCATCCATGGTCC 57.712 47.619 12.58 0.00 32.64 4.46
4831 8794 2.076100 TCGCACAACAACTCATCATCC 58.924 47.619 0.00 0.00 0.00 3.51
4861 8824 2.325583 TGAAATCCACAGATACGGCC 57.674 50.000 0.00 0.00 30.42 6.13
4870 8833 2.421952 GCTCCTGCCTATGAAATCCACA 60.422 50.000 0.00 0.00 0.00 4.17
4880 8843 1.461075 CCCCTCTGCTCCTGCCTAT 60.461 63.158 0.00 0.00 38.71 2.57
4898 8861 1.338020 CACTTGTTGCCAGAAAGTCCC 59.662 52.381 0.00 0.00 31.88 4.46
4912 8875 3.606846 CGTGAAATGATTCGTGCACTTGT 60.607 43.478 16.19 0.00 38.46 3.16
4950 8913 1.212441 TGATGTGCATGTCATAGGGCA 59.788 47.619 0.00 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.