Multiple sequence alignment - TraesCS7D01G175500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G175500 chr7D 100.000 2014 0 0 2015 4028 127643092 127645105 0.000000e+00 3720
1 TraesCS7D01G175500 chr7D 100.000 1557 0 0 1 1557 127641078 127642634 0.000000e+00 2876
2 TraesCS7D01G175500 chr7D 92.633 1724 77 32 2312 4022 127676933 127678619 0.000000e+00 2435
3 TraesCS7D01G175500 chr7D 89.983 1178 97 13 2646 3813 624917580 624916414 0.000000e+00 1502
4 TraesCS7D01G175500 chr7D 90.085 1170 96 10 2650 3814 627018179 627019333 0.000000e+00 1500
5 TraesCS7D01G175500 chr7D 94.342 707 39 1 834 1540 127676062 127676767 0.000000e+00 1083
6 TraesCS7D01G175500 chr7D 96.465 396 13 1 404 798 546779079 546778684 0.000000e+00 652
7 TraesCS7D01G175500 chr7D 96.173 392 14 1 412 802 554676000 554675609 1.220000e-179 640
8 TraesCS7D01G175500 chr7D 95.707 396 16 1 408 802 3378216 3378611 1.580000e-178 636
9 TraesCS7D01G175500 chr7D 95.262 401 16 3 402 801 363904011 363903613 2.040000e-177 632
10 TraesCS7D01G175500 chr7D 90.119 253 24 1 1 252 127675677 127675929 1.080000e-85 327
11 TraesCS7D01G175500 chr7D 94.578 166 8 1 2033 2198 127676769 127676933 5.170000e-64 255
12 TraesCS7D01G175500 chr7D 91.200 125 9 2 1 124 127506989 127507112 6.920000e-38 169
13 TraesCS7D01G175500 chr7D 81.618 136 24 1 3 137 497200817 497200952 1.180000e-20 111
14 TraesCS7D01G175500 chr4D 92.000 1150 71 18 2678 3814 274471300 274472441 0.000000e+00 1594
15 TraesCS7D01G175500 chr5D 91.171 1178 79 17 2650 3819 247754326 247755486 0.000000e+00 1576
16 TraesCS7D01G175500 chr5D 96.725 397 11 2 412 807 109044647 109044252 0.000000e+00 660
17 TraesCS7D01G175500 chr5D 96.465 396 12 2 406 800 7604137 7603743 0.000000e+00 652
18 TraesCS7D01G175500 chr3D 90.625 1184 83 18 2650 3818 600494731 600493561 0.000000e+00 1546
19 TraesCS7D01G175500 chr3D 96.429 392 13 1 410 800 597925776 597926167 0.000000e+00 645
20 TraesCS7D01G175500 chr3D 80.714 140 23 4 1 137 268532962 268533100 5.510000e-19 106
21 TraesCS7D01G175500 chr2D 90.396 1187 92 17 2646 3821 462257785 462258960 0.000000e+00 1541
22 TraesCS7D01G175500 chr4B 90.119 1174 98 16 2650 3814 498203818 498204982 0.000000e+00 1509
23 TraesCS7D01G175500 chr3B 89.550 1177 99 18 2656 3819 46035243 46036408 0.000000e+00 1471
24 TraesCS7D01G175500 chr3B 80.435 138 26 1 1 137 348122566 348122703 1.980000e-18 104
25 TraesCS7D01G175500 chr7A 91.930 855 35 16 3150 3998 128394277 128395103 0.000000e+00 1166
26 TraesCS7D01G175500 chr7A 93.370 724 47 1 834 1557 128392790 128393512 0.000000e+00 1070
27 TraesCS7D01G175500 chr7A 93.243 222 14 1 193 413 128392501 128392722 3.880000e-85 326
28 TraesCS7D01G175500 chr7A 88.372 129 14 1 1 128 128227858 128227986 1.940000e-33 154
29 TraesCS7D01G175500 chr7A 81.429 140 23 3 1 138 370102616 370102478 1.180000e-20 111
30 TraesCS7D01G175500 chr6D 96.641 387 12 1 413 798 104765606 104765992 3.390000e-180 641
31 TraesCS7D01G175500 chr1A 96.164 391 14 1 409 798 560264380 560264770 4.390000e-179 638
32 TraesCS7D01G175500 chr5B 87.591 137 17 0 1 137 111251147 111251283 4.170000e-35 159
33 TraesCS7D01G175500 chr2B 81.944 144 26 0 1 144 339827586 339827443 5.470000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G175500 chr7D 127641078 127645105 4027 False 3298 3720 100.000000 1 4028 2 chr7D.!!$F5 4027
1 TraesCS7D01G175500 chr7D 624916414 624917580 1166 True 1502 1502 89.983000 2646 3813 1 chr7D.!!$R4 1167
2 TraesCS7D01G175500 chr7D 627018179 627019333 1154 False 1500 1500 90.085000 2650 3814 1 chr7D.!!$F4 1164
3 TraesCS7D01G175500 chr7D 127675677 127678619 2942 False 1025 2435 92.918000 1 4022 4 chr7D.!!$F6 4021
4 TraesCS7D01G175500 chr4D 274471300 274472441 1141 False 1594 1594 92.000000 2678 3814 1 chr4D.!!$F1 1136
5 TraesCS7D01G175500 chr5D 247754326 247755486 1160 False 1576 1576 91.171000 2650 3819 1 chr5D.!!$F1 1169
6 TraesCS7D01G175500 chr3D 600493561 600494731 1170 True 1546 1546 90.625000 2650 3818 1 chr3D.!!$R1 1168
7 TraesCS7D01G175500 chr2D 462257785 462258960 1175 False 1541 1541 90.396000 2646 3821 1 chr2D.!!$F1 1175
8 TraesCS7D01G175500 chr4B 498203818 498204982 1164 False 1509 1509 90.119000 2650 3814 1 chr4B.!!$F1 1164
9 TraesCS7D01G175500 chr3B 46035243 46036408 1165 False 1471 1471 89.550000 2656 3819 1 chr3B.!!$F1 1163
10 TraesCS7D01G175500 chr7A 128392501 128395103 2602 False 854 1166 92.847667 193 3998 3 chr7A.!!$F2 3805

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
236 238 0.037975 AATCGTGTACGTGGGTGGTC 60.038 55.000 0.00 0.0 40.80 4.02 F
430 461 0.105709 AGGGGGTGTTTGTTTCCAGG 60.106 55.000 0.00 0.0 0.00 4.45 F
432 463 0.105913 GGGGTGTTTGTTTCCAGGGA 60.106 55.000 0.00 0.0 0.00 4.20 F
599 630 0.178953 ATAATGCCCCTCCATGCACC 60.179 55.000 0.00 0.0 40.88 5.01 F
803 834 0.179056 ACCAAACACCACCTCAGACG 60.179 55.000 0.00 0.0 0.00 4.18 F
936 1009 0.608130 TCACGCACATTAGCCTCTGT 59.392 50.000 0.00 0.0 0.00 3.41 F
1290 1363 1.153901 CTGGCGTACGACGGACAAT 60.154 57.895 26.16 0.0 42.82 2.71 F
2303 2376 0.305313 TGTTTTCGCAAGTACACGGC 59.695 50.000 0.00 0.0 39.48 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1431 1504 0.250081 TATGCTGCACGACACCACAA 60.250 50.000 3.57 0.0 0.0 3.33 R
2284 2357 0.305313 GCCGTGTACTTGCGAAAACA 59.695 50.000 0.00 0.0 0.0 2.83 R
2285 2358 0.385098 GGCCGTGTACTTGCGAAAAC 60.385 55.000 0.00 0.0 0.0 2.43 R
2287 2360 0.604243 ATGGCCGTGTACTTGCGAAA 60.604 50.000 0.00 0.0 0.0 3.46 R
2288 2361 1.004320 ATGGCCGTGTACTTGCGAA 60.004 52.632 0.00 0.0 0.0 4.70 R
2290 2363 1.089481 ATCATGGCCGTGTACTTGCG 61.089 55.000 24.24 0.0 0.0 4.85 R
2314 2387 1.131638 ACAACTGGACAGCAAGGAGA 58.868 50.000 0.00 0.0 0.0 3.71 R
3848 4004 0.036388 GTCAGTCAGCCCATTTCCGA 60.036 55.000 0.00 0.0 0.0 4.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.425312 TCTCCTTGATCTCACGAAGAGC 59.575 50.000 0.00 0.00 44.35 4.09
70 71 3.018856 TGGGTCATGTCTTGATGATTGC 58.981 45.455 0.00 0.00 36.54 3.56
72 73 4.080413 TGGGTCATGTCTTGATGATTGCTA 60.080 41.667 0.00 0.00 36.54 3.49
87 88 8.654230 GATGATTGCTATATAATCGTCACCAT 57.346 34.615 18.24 0.00 44.35 3.55
88 89 7.832503 TGATTGCTATATAATCGTCACCATG 57.167 36.000 0.00 0.00 37.36 3.66
90 91 5.146010 TGCTATATAATCGTCACCATGCA 57.854 39.130 0.00 0.00 0.00 3.96
91 92 4.929211 TGCTATATAATCGTCACCATGCAC 59.071 41.667 0.00 0.00 0.00 4.57
93 94 2.309528 ATAATCGTCACCATGCACGT 57.690 45.000 9.15 0.00 37.30 4.49
108 109 1.153529 ACGTGCACAAGTTCGGTCA 60.154 52.632 18.64 0.00 0.00 4.02
116 117 1.400494 ACAAGTTCGGTCAGCAAACAC 59.600 47.619 0.00 0.00 0.00 3.32
140 141 1.063327 TTTGTTGCACCGACAAGCG 59.937 52.632 2.91 0.00 38.72 4.68
160 161 1.110442 CCATTTTGAGCGGGCCAATA 58.890 50.000 4.39 0.00 0.00 1.90
182 183 0.388659 TGGCTTGTGTACGTACCGTT 59.611 50.000 22.43 0.00 41.54 4.44
230 232 0.742990 ATGGGCAATCGTGTACGTGG 60.743 55.000 0.00 0.00 40.80 4.94
231 233 2.104253 GGGCAATCGTGTACGTGGG 61.104 63.158 0.00 0.00 40.80 4.61
232 234 1.375013 GGCAATCGTGTACGTGGGT 60.375 57.895 0.00 0.00 40.80 4.51
233 235 1.632046 GGCAATCGTGTACGTGGGTG 61.632 60.000 0.00 0.77 40.80 4.61
234 236 1.632046 GCAATCGTGTACGTGGGTGG 61.632 60.000 0.00 0.00 40.80 4.61
235 237 0.320073 CAATCGTGTACGTGGGTGGT 60.320 55.000 0.00 0.00 40.80 4.16
236 238 0.037975 AATCGTGTACGTGGGTGGTC 60.038 55.000 0.00 0.00 40.80 4.02
237 239 1.180456 ATCGTGTACGTGGGTGGTCA 61.180 55.000 0.00 0.00 40.80 4.02
238 240 1.372499 CGTGTACGTGGGTGGTCAG 60.372 63.158 0.00 0.00 34.11 3.51
239 241 1.744014 GTGTACGTGGGTGGTCAGT 59.256 57.895 0.00 0.00 0.00 3.41
240 242 0.599204 GTGTACGTGGGTGGTCAGTG 60.599 60.000 0.00 0.00 0.00 3.66
241 243 1.666872 GTACGTGGGTGGTCAGTGC 60.667 63.158 0.00 0.00 0.00 4.40
242 244 3.215597 TACGTGGGTGGTCAGTGCG 62.216 63.158 0.00 0.00 0.00 5.34
246 248 4.947147 GGGTGGTCAGTGCGCCAA 62.947 66.667 4.18 0.00 36.41 4.52
247 249 2.672996 GGTGGTCAGTGCGCCAAT 60.673 61.111 4.18 0.00 36.41 3.16
248 250 2.690778 GGTGGTCAGTGCGCCAATC 61.691 63.158 4.18 0.00 36.41 2.67
249 251 2.741985 TGGTCAGTGCGCCAATCG 60.742 61.111 4.18 0.00 42.12 3.34
258 260 3.798380 CGCCAATCGCATCACTGA 58.202 55.556 0.00 0.00 37.30 3.41
297 328 3.224324 ACGCCTCACTGTGTCGGT 61.224 61.111 7.79 0.00 0.00 4.69
298 329 2.430921 CGCCTCACTGTGTCGGTC 60.431 66.667 7.79 5.72 0.00 4.79
395 426 4.717629 TGAGCGACGCAGGTTCGG 62.718 66.667 23.70 0.00 0.00 4.30
409 440 1.906824 TTCGGAAGCGACCTGGACT 60.907 57.895 0.00 0.00 0.00 3.85
410 441 1.874345 TTCGGAAGCGACCTGGACTC 61.874 60.000 0.00 0.00 0.00 3.36
411 442 2.636412 CGGAAGCGACCTGGACTCA 61.636 63.158 0.00 0.00 0.00 3.41
412 443 1.216710 GGAAGCGACCTGGACTCAG 59.783 63.158 0.00 0.00 40.59 3.35
420 451 3.906980 CTGGACTCAGGGGGTGTT 58.093 61.111 0.00 0.00 37.36 3.32
421 452 2.155065 CTGGACTCAGGGGGTGTTT 58.845 57.895 0.00 0.00 37.36 2.83
422 453 0.250901 CTGGACTCAGGGGGTGTTTG 60.251 60.000 0.00 0.00 37.36 2.93
423 454 0.991355 TGGACTCAGGGGGTGTTTGT 60.991 55.000 0.00 0.00 0.00 2.83
424 455 0.185175 GGACTCAGGGGGTGTTTGTT 59.815 55.000 0.00 0.00 0.00 2.83
425 456 1.411074 GGACTCAGGGGGTGTTTGTTT 60.411 52.381 0.00 0.00 0.00 2.83
426 457 1.954382 GACTCAGGGGGTGTTTGTTTC 59.046 52.381 0.00 0.00 0.00 2.78
427 458 1.328279 CTCAGGGGGTGTTTGTTTCC 58.672 55.000 0.00 0.00 0.00 3.13
428 459 0.631753 TCAGGGGGTGTTTGTTTCCA 59.368 50.000 0.00 0.00 0.00 3.53
429 460 1.039856 CAGGGGGTGTTTGTTTCCAG 58.960 55.000 0.00 0.00 0.00 3.86
430 461 0.105709 AGGGGGTGTTTGTTTCCAGG 60.106 55.000 0.00 0.00 0.00 4.45
431 462 1.118965 GGGGGTGTTTGTTTCCAGGG 61.119 60.000 0.00 0.00 0.00 4.45
432 463 0.105913 GGGGTGTTTGTTTCCAGGGA 60.106 55.000 0.00 0.00 0.00 4.20
433 464 1.037493 GGGTGTTTGTTTCCAGGGAC 58.963 55.000 0.00 0.00 0.00 4.46
434 465 1.411074 GGGTGTTTGTTTCCAGGGACT 60.411 52.381 0.00 0.00 43.88 3.85
435 466 2.384828 GGTGTTTGTTTCCAGGGACTT 58.615 47.619 0.00 0.00 34.60 3.01
436 467 2.764010 GGTGTTTGTTTCCAGGGACTTT 59.236 45.455 0.00 0.00 34.60 2.66
437 468 3.196901 GGTGTTTGTTTCCAGGGACTTTT 59.803 43.478 0.00 0.00 34.60 2.27
438 469 4.323180 GGTGTTTGTTTCCAGGGACTTTTT 60.323 41.667 0.00 0.00 34.60 1.94
459 490 7.614124 TTTTTGTGTACGGACTAGAAAAAGT 57.386 32.000 0.00 0.00 0.00 2.66
460 491 6.833342 TTTGTGTACGGACTAGAAAAAGTC 57.167 37.500 0.00 0.00 44.31 3.01
471 502 7.706100 GACTAGAAAAAGTCCCTCTTAGAGA 57.294 40.000 11.32 0.00 40.06 3.10
472 503 7.470935 ACTAGAAAAAGTCCCTCTTAGAGAC 57.529 40.000 11.32 2.08 35.02 3.36
473 504 7.243091 ACTAGAAAAAGTCCCTCTTAGAGACT 58.757 38.462 11.32 4.57 42.58 3.24
494 525 2.275134 TTTTACCAAACGGGAGGGAC 57.725 50.000 0.00 0.00 41.15 4.46
496 527 1.437397 TTACCAAACGGGAGGGACTT 58.563 50.000 0.00 0.00 41.55 3.01
497 528 1.437397 TACCAAACGGGAGGGACTTT 58.563 50.000 0.00 0.00 41.55 2.66
498 529 0.554305 ACCAAACGGGAGGGACTTTT 59.446 50.000 0.00 0.00 41.55 2.27
499 530 1.063492 ACCAAACGGGAGGGACTTTTT 60.063 47.619 0.00 0.00 41.55 1.94
500 531 2.175284 ACCAAACGGGAGGGACTTTTTA 59.825 45.455 0.00 0.00 41.55 1.52
501 532 2.817844 CCAAACGGGAGGGACTTTTTAG 59.182 50.000 0.00 0.00 41.55 1.85
502 533 2.817844 CAAACGGGAGGGACTTTTTAGG 59.182 50.000 0.00 0.00 41.55 2.69
503 534 0.989602 ACGGGAGGGACTTTTTAGGG 59.010 55.000 0.00 0.00 41.55 3.53
504 535 1.282382 CGGGAGGGACTTTTTAGGGA 58.718 55.000 0.00 0.00 41.55 4.20
505 536 1.631898 CGGGAGGGACTTTTTAGGGAA 59.368 52.381 0.00 0.00 41.55 3.97
506 537 2.241430 CGGGAGGGACTTTTTAGGGAAT 59.759 50.000 0.00 0.00 41.55 3.01
507 538 3.457012 CGGGAGGGACTTTTTAGGGAATA 59.543 47.826 0.00 0.00 41.55 1.75
508 539 4.080186 CGGGAGGGACTTTTTAGGGAATAA 60.080 45.833 0.00 0.00 41.55 1.40
509 540 5.574120 CGGGAGGGACTTTTTAGGGAATAAA 60.574 44.000 0.00 0.00 41.55 1.40
510 541 5.655532 GGGAGGGACTTTTTAGGGAATAAAC 59.344 44.000 0.00 0.00 41.55 2.01
511 542 6.491383 GGAGGGACTTTTTAGGGAATAAACT 58.509 40.000 0.00 0.00 41.55 2.66
512 543 7.312120 GGGAGGGACTTTTTAGGGAATAAACTA 60.312 40.741 0.00 0.00 41.55 2.24
513 544 7.774157 GGAGGGACTTTTTAGGGAATAAACTAG 59.226 40.741 0.00 0.00 41.55 2.57
514 545 7.640313 AGGGACTTTTTAGGGAATAAACTAGG 58.360 38.462 0.00 0.00 33.04 3.02
515 546 6.320672 GGGACTTTTTAGGGAATAAACTAGGC 59.679 42.308 0.00 0.00 33.04 3.93
516 547 6.888088 GGACTTTTTAGGGAATAAACTAGGCA 59.112 38.462 0.00 0.00 33.04 4.75
517 548 7.560262 GGACTTTTTAGGGAATAAACTAGGCAT 59.440 37.037 0.00 0.00 33.04 4.40
518 549 8.895141 ACTTTTTAGGGAATAAACTAGGCATT 57.105 30.769 0.00 0.00 33.04 3.56
519 550 9.321532 ACTTTTTAGGGAATAAACTAGGCATTT 57.678 29.630 0.00 0.00 33.04 2.32
520 551 9.586435 CTTTTTAGGGAATAAACTAGGCATTTG 57.414 33.333 0.00 0.00 33.04 2.32
521 552 7.654022 TTTAGGGAATAAACTAGGCATTTGG 57.346 36.000 0.00 0.00 0.00 3.28
522 553 4.546674 AGGGAATAAACTAGGCATTTGGG 58.453 43.478 0.00 0.00 0.00 4.12
523 554 4.231890 AGGGAATAAACTAGGCATTTGGGA 59.768 41.667 0.00 0.00 0.00 4.37
524 555 4.341235 GGGAATAAACTAGGCATTTGGGAC 59.659 45.833 0.00 0.00 0.00 4.46
525 556 5.201243 GGAATAAACTAGGCATTTGGGACT 58.799 41.667 0.00 0.00 0.00 3.85
526 557 6.362248 GGAATAAACTAGGCATTTGGGACTA 58.638 40.000 0.00 0.00 0.00 2.59
527 558 6.831868 GGAATAAACTAGGCATTTGGGACTAA 59.168 38.462 0.00 0.00 0.00 2.24
528 559 7.340999 GGAATAAACTAGGCATTTGGGACTAAA 59.659 37.037 0.00 0.00 0.00 1.85
529 560 8.838649 AATAAACTAGGCATTTGGGACTAAAT 57.161 30.769 0.00 0.00 0.00 1.40
530 561 6.530019 AAACTAGGCATTTGGGACTAAATG 57.470 37.500 14.45 14.45 46.03 2.32
531 562 5.450818 ACTAGGCATTTGGGACTAAATGA 57.549 39.130 20.68 3.88 46.13 2.57
532 563 5.826643 ACTAGGCATTTGGGACTAAATGAA 58.173 37.500 20.68 7.74 46.13 2.57
533 564 5.888161 ACTAGGCATTTGGGACTAAATGAAG 59.112 40.000 20.68 16.00 46.13 3.02
534 565 4.934356 AGGCATTTGGGACTAAATGAAGA 58.066 39.130 20.68 0.00 46.13 2.87
535 566 5.332743 AGGCATTTGGGACTAAATGAAGAA 58.667 37.500 20.68 0.00 46.13 2.52
536 567 5.420104 AGGCATTTGGGACTAAATGAAGAAG 59.580 40.000 20.68 0.00 46.13 2.85
537 568 5.418840 GGCATTTGGGACTAAATGAAGAAGA 59.581 40.000 20.68 0.00 46.13 2.87
538 569 6.325596 GCATTTGGGACTAAATGAAGAAGAC 58.674 40.000 20.68 2.40 46.13 3.01
539 570 6.151817 GCATTTGGGACTAAATGAAGAAGACT 59.848 38.462 20.68 0.00 46.13 3.24
540 571 7.627300 GCATTTGGGACTAAATGAAGAAGACTC 60.627 40.741 20.68 1.26 46.13 3.36
541 572 6.688073 TTGGGACTAAATGAAGAAGACTCT 57.312 37.500 0.00 0.00 0.00 3.24
542 573 6.287589 TGGGACTAAATGAAGAAGACTCTC 57.712 41.667 0.00 0.00 0.00 3.20
543 574 5.780282 TGGGACTAAATGAAGAAGACTCTCA 59.220 40.000 0.00 0.00 0.00 3.27
544 575 6.270000 TGGGACTAAATGAAGAAGACTCTCAA 59.730 38.462 0.00 0.00 0.00 3.02
545 576 6.816140 GGGACTAAATGAAGAAGACTCTCAAG 59.184 42.308 0.00 0.00 0.00 3.02
546 577 6.816140 GGACTAAATGAAGAAGACTCTCAAGG 59.184 42.308 0.00 0.00 0.00 3.61
547 578 7.310113 GGACTAAATGAAGAAGACTCTCAAGGA 60.310 40.741 0.00 0.00 0.00 3.36
548 579 7.610865 ACTAAATGAAGAAGACTCTCAAGGAG 58.389 38.462 0.00 0.00 46.87 3.69
549 580 6.678568 AAATGAAGAAGACTCTCAAGGAGA 57.321 37.500 0.00 0.00 44.45 3.71
560 591 4.357918 TCTCAAGGAGAGTCTTTTTGGG 57.642 45.455 14.13 12.10 44.98 4.12
561 592 3.973973 TCTCAAGGAGAGTCTTTTTGGGA 59.026 43.478 13.30 13.30 44.98 4.37
562 593 4.068599 CTCAAGGAGAGTCTTTTTGGGAC 58.931 47.826 10.42 0.00 39.62 4.46
563 594 3.716872 TCAAGGAGAGTCTTTTTGGGACT 59.283 43.478 14.13 0.00 45.37 3.85
564 595 4.166144 TCAAGGAGAGTCTTTTTGGGACTT 59.834 41.667 14.13 0.00 43.13 3.01
565 596 4.797912 AGGAGAGTCTTTTTGGGACTTT 57.202 40.909 0.00 0.00 43.13 2.66
566 597 5.130705 AGGAGAGTCTTTTTGGGACTTTT 57.869 39.130 0.00 0.00 43.13 2.27
567 598 5.519808 AGGAGAGTCTTTTTGGGACTTTTT 58.480 37.500 0.00 0.00 43.13 1.94
568 599 5.360999 AGGAGAGTCTTTTTGGGACTTTTTG 59.639 40.000 0.00 0.00 43.13 2.44
569 600 5.451937 GGAGAGTCTTTTTGGGACTTTTTGG 60.452 44.000 0.00 0.00 43.13 3.28
570 601 5.023452 AGAGTCTTTTTGGGACTTTTTGGT 58.977 37.500 0.00 0.00 43.13 3.67
571 602 6.192044 AGAGTCTTTTTGGGACTTTTTGGTA 58.808 36.000 0.00 0.00 43.13 3.25
572 603 6.096423 AGAGTCTTTTTGGGACTTTTTGGTAC 59.904 38.462 0.00 0.00 43.13 3.34
573 604 5.955959 AGTCTTTTTGGGACTTTTTGGTACT 59.044 36.000 0.00 0.00 40.65 2.73
574 605 6.439375 AGTCTTTTTGGGACTTTTTGGTACTT 59.561 34.615 0.00 0.00 40.65 2.24
575 606 7.038587 AGTCTTTTTGGGACTTTTTGGTACTTT 60.039 33.333 0.00 0.00 40.65 2.66
576 607 7.604927 GTCTTTTTGGGACTTTTTGGTACTTTT 59.395 33.333 0.00 0.00 0.00 2.27
577 608 7.820386 TCTTTTTGGGACTTTTTGGTACTTTTC 59.180 33.333 0.00 0.00 0.00 2.29
578 609 5.601583 TTGGGACTTTTTGGTACTTTTCC 57.398 39.130 0.00 0.00 0.00 3.13
579 610 4.611367 TGGGACTTTTTGGTACTTTTCCA 58.389 39.130 0.00 0.00 0.00 3.53
580 611 5.024118 TGGGACTTTTTGGTACTTTTCCAA 58.976 37.500 0.00 0.00 42.29 3.53
581 612 5.663556 TGGGACTTTTTGGTACTTTTCCAAT 59.336 36.000 0.00 0.00 43.25 3.16
582 613 6.839657 TGGGACTTTTTGGTACTTTTCCAATA 59.160 34.615 0.00 0.00 43.25 1.90
583 614 7.344871 TGGGACTTTTTGGTACTTTTCCAATAA 59.655 33.333 0.00 0.00 43.25 1.40
584 615 8.372459 GGGACTTTTTGGTACTTTTCCAATAAT 58.628 33.333 0.00 0.00 43.25 1.28
585 616 9.203421 GGACTTTTTGGTACTTTTCCAATAATG 57.797 33.333 0.00 0.00 43.25 1.90
586 617 8.601845 ACTTTTTGGTACTTTTCCAATAATGC 57.398 30.769 0.00 0.00 43.25 3.56
587 618 7.659799 ACTTTTTGGTACTTTTCCAATAATGCC 59.340 33.333 0.00 0.00 43.25 4.40
588 619 5.669164 TTGGTACTTTTCCAATAATGCCC 57.331 39.130 0.00 0.00 39.62 5.36
589 620 4.027437 TGGTACTTTTCCAATAATGCCCC 58.973 43.478 0.00 0.00 31.50 5.80
590 621 4.264623 TGGTACTTTTCCAATAATGCCCCT 60.265 41.667 0.00 0.00 31.50 4.79
591 622 4.341235 GGTACTTTTCCAATAATGCCCCTC 59.659 45.833 0.00 0.00 0.00 4.30
592 623 3.374764 ACTTTTCCAATAATGCCCCTCC 58.625 45.455 0.00 0.00 0.00 4.30
593 624 3.245948 ACTTTTCCAATAATGCCCCTCCA 60.246 43.478 0.00 0.00 0.00 3.86
594 625 3.704545 TTTCCAATAATGCCCCTCCAT 57.295 42.857 0.00 0.00 0.00 3.41
595 626 2.681319 TCCAATAATGCCCCTCCATG 57.319 50.000 0.00 0.00 0.00 3.66
596 627 0.971386 CCAATAATGCCCCTCCATGC 59.029 55.000 0.00 0.00 0.00 4.06
597 628 1.707106 CAATAATGCCCCTCCATGCA 58.293 50.000 0.00 0.00 42.52 3.96
598 629 1.342174 CAATAATGCCCCTCCATGCAC 59.658 52.381 0.00 0.00 40.88 4.57
599 630 0.178953 ATAATGCCCCTCCATGCACC 60.179 55.000 0.00 0.00 40.88 5.01
600 631 2.296945 TAATGCCCCTCCATGCACCC 62.297 60.000 0.00 0.00 40.88 4.61
602 633 4.147587 GCCCCTCCATGCACCCAT 62.148 66.667 0.00 0.00 0.00 4.00
603 634 2.691732 CCCCTCCATGCACCCATT 59.308 61.111 0.00 0.00 0.00 3.16
604 635 1.759299 CCCCTCCATGCACCCATTG 60.759 63.158 0.00 0.00 0.00 2.82
605 636 1.759299 CCCTCCATGCACCCATTGG 60.759 63.158 0.00 0.00 37.80 3.16
606 637 2.428925 CCTCCATGCACCCATTGGC 61.429 63.158 0.00 0.00 33.59 4.52
607 638 2.364056 TCCATGCACCCATTGGCC 60.364 61.111 0.00 0.00 33.59 5.36
608 639 3.472726 CCATGCACCCATTGGCCC 61.473 66.667 0.00 0.00 33.59 5.80
609 640 3.840594 CATGCACCCATTGGCCCG 61.841 66.667 0.00 0.00 33.59 6.13
632 663 3.749665 ACCCATGGTGTTGTTTGATTG 57.250 42.857 11.73 0.00 32.98 2.67
633 664 3.037549 ACCCATGGTGTTGTTTGATTGT 58.962 40.909 11.73 0.00 32.98 2.71
634 665 3.454082 ACCCATGGTGTTGTTTGATTGTT 59.546 39.130 11.73 0.00 32.98 2.83
635 666 4.651503 ACCCATGGTGTTGTTTGATTGTTA 59.348 37.500 11.73 0.00 32.98 2.41
636 667 5.306678 ACCCATGGTGTTGTTTGATTGTTAT 59.693 36.000 11.73 0.00 32.98 1.89
637 668 6.183361 ACCCATGGTGTTGTTTGATTGTTATT 60.183 34.615 11.73 0.00 32.98 1.40
638 669 6.709846 CCCATGGTGTTGTTTGATTGTTATTT 59.290 34.615 11.73 0.00 0.00 1.40
639 670 7.228308 CCCATGGTGTTGTTTGATTGTTATTTT 59.772 33.333 11.73 0.00 0.00 1.82
640 671 8.619546 CCATGGTGTTGTTTGATTGTTATTTTT 58.380 29.630 2.57 0.00 0.00 1.94
641 672 9.649024 CATGGTGTTGTTTGATTGTTATTTTTC 57.351 29.630 0.00 0.00 0.00 2.29
642 673 9.612066 ATGGTGTTGTTTGATTGTTATTTTTCT 57.388 25.926 0.00 0.00 0.00 2.52
661 692 8.918202 TTTTTCTATATACTAGGGGCAACATG 57.082 34.615 0.00 0.00 39.74 3.21
662 693 6.620877 TTCTATATACTAGGGGCAACATGG 57.379 41.667 0.00 0.00 39.74 3.66
663 694 5.661565 TCTATATACTAGGGGCAACATGGT 58.338 41.667 0.00 0.00 39.74 3.55
664 695 4.910458 ATATACTAGGGGCAACATGGTC 57.090 45.455 0.00 0.00 39.74 4.02
665 696 1.959710 TACTAGGGGCAACATGGTCA 58.040 50.000 0.00 0.00 39.74 4.02
666 697 1.298953 ACTAGGGGCAACATGGTCAT 58.701 50.000 0.00 0.00 39.74 3.06
667 698 1.640670 ACTAGGGGCAACATGGTCATT 59.359 47.619 0.00 0.00 39.74 2.57
668 699 2.042979 ACTAGGGGCAACATGGTCATTT 59.957 45.455 0.00 0.00 39.74 2.32
669 700 2.917713 AGGGGCAACATGGTCATTTA 57.082 45.000 0.00 0.00 39.74 1.40
670 701 3.182887 AGGGGCAACATGGTCATTTAA 57.817 42.857 0.00 0.00 39.74 1.52
671 702 3.723325 AGGGGCAACATGGTCATTTAAT 58.277 40.909 0.00 0.00 39.74 1.40
672 703 4.877773 AGGGGCAACATGGTCATTTAATA 58.122 39.130 0.00 0.00 39.74 0.98
673 704 5.276440 AGGGGCAACATGGTCATTTAATAA 58.724 37.500 0.00 0.00 39.74 1.40
674 705 5.128663 AGGGGCAACATGGTCATTTAATAAC 59.871 40.000 0.00 0.00 39.74 1.89
675 706 5.356426 GGGCAACATGGTCATTTAATAACC 58.644 41.667 0.00 0.00 39.74 2.85
676 707 5.128663 GGGCAACATGGTCATTTAATAACCT 59.871 40.000 0.00 0.00 39.74 3.50
677 708 6.273071 GGCAACATGGTCATTTAATAACCTC 58.727 40.000 0.00 0.00 34.05 3.85
678 709 6.096846 GGCAACATGGTCATTTAATAACCTCT 59.903 38.462 0.00 0.00 34.05 3.69
679 710 7.284489 GGCAACATGGTCATTTAATAACCTCTA 59.716 37.037 0.00 0.00 34.05 2.43
680 711 8.345565 GCAACATGGTCATTTAATAACCTCTAG 58.654 37.037 0.00 0.00 34.05 2.43
681 712 8.840321 CAACATGGTCATTTAATAACCTCTAGG 58.160 37.037 0.00 0.00 42.17 3.02
682 713 8.331931 ACATGGTCATTTAATAACCTCTAGGA 57.668 34.615 2.23 0.00 38.94 2.94
683 714 8.778059 ACATGGTCATTTAATAACCTCTAGGAA 58.222 33.333 2.23 0.00 38.94 3.36
684 715 9.277783 CATGGTCATTTAATAACCTCTAGGAAG 57.722 37.037 2.23 0.00 38.94 3.46
685 716 7.802117 TGGTCATTTAATAACCTCTAGGAAGG 58.198 38.462 2.23 0.00 42.55 3.46
686 717 7.147373 TGGTCATTTAATAACCTCTAGGAAGGG 60.147 40.741 2.23 0.00 41.04 3.95
687 718 7.072076 GGTCATTTAATAACCTCTAGGAAGGGA 59.928 40.741 2.23 0.00 41.04 4.20
688 719 7.932491 GTCATTTAATAACCTCTAGGAAGGGAC 59.068 40.741 2.23 0.00 41.04 4.46
689 720 7.849904 TCATTTAATAACCTCTAGGAAGGGACT 59.150 37.037 2.23 0.00 41.04 3.85
690 721 9.155785 CATTTAATAACCTCTAGGAAGGGACTA 57.844 37.037 2.23 0.00 41.04 2.59
691 722 9.739737 ATTTAATAACCTCTAGGAAGGGACTAA 57.260 33.333 2.23 0.00 41.04 2.24
692 723 8.779096 TTAATAACCTCTAGGAAGGGACTAAG 57.221 38.462 2.23 0.00 41.04 2.18
693 724 3.691698 ACCTCTAGGAAGGGACTAAGG 57.308 52.381 2.23 0.00 41.04 2.69
694 725 3.208173 ACCTCTAGGAAGGGACTAAGGA 58.792 50.000 2.23 0.00 41.04 3.36
695 726 3.052717 ACCTCTAGGAAGGGACTAAGGAC 60.053 52.174 2.23 0.00 41.04 3.85
696 727 3.205733 CCTCTAGGAAGGGACTAAGGACT 59.794 52.174 0.00 0.00 38.49 3.85
697 728 4.326291 CCTCTAGGAAGGGACTAAGGACTT 60.326 50.000 0.00 0.00 38.49 3.01
698 729 5.274015 CTCTAGGAAGGGACTAAGGACTTT 58.726 45.833 0.00 0.00 38.49 2.66
699 730 5.662597 TCTAGGAAGGGACTAAGGACTTTT 58.337 41.667 0.00 0.00 38.49 2.27
700 731 6.089502 TCTAGGAAGGGACTAAGGACTTTTT 58.910 40.000 0.00 0.00 38.49 1.94
701 732 7.251195 TCTAGGAAGGGACTAAGGACTTTTTA 58.749 38.462 0.00 0.00 38.49 1.52
702 733 6.375830 AGGAAGGGACTAAGGACTTTTTAG 57.624 41.667 0.00 0.00 38.49 1.85
703 734 5.850583 AGGAAGGGACTAAGGACTTTTTAGT 59.149 40.000 0.00 0.00 42.43 2.24
712 743 9.543783 GACTAAGGACTTTTTAGTCTCTGAAAA 57.456 33.333 14.63 0.00 46.89 2.29
713 744 9.327628 ACTAAGGACTTTTTAGTCTCTGAAAAC 57.672 33.333 5.40 0.00 36.84 2.43
714 745 9.326413 CTAAGGACTTTTTAGTCTCTGAAAACA 57.674 33.333 5.40 0.00 38.74 2.83
715 746 8.575649 AAGGACTTTTTAGTCTCTGAAAACAA 57.424 30.769 5.40 0.00 38.74 2.83
716 747 8.575649 AGGACTTTTTAGTCTCTGAAAACAAA 57.424 30.769 5.40 0.00 38.74 2.83
717 748 8.459635 AGGACTTTTTAGTCTCTGAAAACAAAC 58.540 33.333 5.40 0.00 38.74 2.93
718 749 8.241367 GGACTTTTTAGTCTCTGAAAACAAACA 58.759 33.333 5.40 0.00 38.74 2.83
719 750 9.278734 GACTTTTTAGTCTCTGAAAACAAACAG 57.721 33.333 0.00 0.00 36.01 3.16
720 751 8.244113 ACTTTTTAGTCTCTGAAAACAAACAGG 58.756 33.333 0.00 0.00 35.20 4.00
721 752 6.693315 TTTAGTCTCTGAAAACAAACAGGG 57.307 37.500 0.00 0.00 36.11 4.45
722 753 4.503714 AGTCTCTGAAAACAAACAGGGA 57.496 40.909 0.00 0.00 40.68 4.20
723 754 4.455606 AGTCTCTGAAAACAAACAGGGAG 58.544 43.478 0.00 0.00 43.05 4.30
724 755 3.565902 GTCTCTGAAAACAAACAGGGAGG 59.434 47.826 0.00 0.00 43.05 4.30
725 756 2.887152 CTCTGAAAACAAACAGGGAGGG 59.113 50.000 0.00 0.00 36.82 4.30
726 757 2.512056 TCTGAAAACAAACAGGGAGGGA 59.488 45.455 0.00 0.00 35.20 4.20
727 758 2.623416 CTGAAAACAAACAGGGAGGGAC 59.377 50.000 0.00 0.00 0.00 4.46
728 759 5.924740 TCTGAAAACAAACAGGGAGGGACT 61.925 45.833 0.00 0.00 36.61 3.85
729 760 3.296854 GAAAACAAACAGGGAGGGACTT 58.703 45.455 0.00 0.00 41.55 3.01
730 761 3.398318 AAACAAACAGGGAGGGACTTT 57.602 42.857 0.00 0.00 41.55 2.66
731 762 3.398318 AACAAACAGGGAGGGACTTTT 57.602 42.857 0.00 0.00 41.55 2.27
732 763 3.398318 ACAAACAGGGAGGGACTTTTT 57.602 42.857 0.00 0.00 41.55 1.94
733 764 4.529716 ACAAACAGGGAGGGACTTTTTA 57.470 40.909 0.00 0.00 41.55 1.52
734 765 4.470602 ACAAACAGGGAGGGACTTTTTAG 58.529 43.478 0.00 0.00 41.55 1.85
735 766 3.808834 AACAGGGAGGGACTTTTTAGG 57.191 47.619 0.00 0.00 41.55 2.69
736 767 1.993301 ACAGGGAGGGACTTTTTAGGG 59.007 52.381 0.00 0.00 41.55 3.53
737 768 2.275466 CAGGGAGGGACTTTTTAGGGA 58.725 52.381 0.00 0.00 41.55 4.20
738 769 2.026169 CAGGGAGGGACTTTTTAGGGAC 60.026 54.545 0.00 0.00 41.55 4.46
739 770 2.157833 AGGGAGGGACTTTTTAGGGACT 60.158 50.000 0.00 0.00 41.55 3.85
740 771 3.080153 AGGGAGGGACTTTTTAGGGACTA 59.920 47.826 0.00 0.00 41.55 2.59
741 772 3.455177 GGGAGGGACTTTTTAGGGACTAG 59.545 52.174 0.00 0.00 40.88 2.57
742 773 3.455177 GGAGGGACTTTTTAGGGACTAGG 59.545 52.174 0.00 0.00 40.88 3.02
743 774 3.455177 GAGGGACTTTTTAGGGACTAGGG 59.545 52.174 0.00 0.00 40.88 3.53
744 775 3.080153 AGGGACTTTTTAGGGACTAGGGA 59.920 47.826 0.00 0.00 37.71 4.20
745 776 3.199508 GGGACTTTTTAGGGACTAGGGAC 59.800 52.174 0.00 0.00 44.25 4.46
746 777 4.102598 GGACTTTTTAGGGACTAGGGACT 58.897 47.826 0.00 0.00 44.25 3.85
747 778 4.535294 GGACTTTTTAGGGACTAGGGACTT 59.465 45.833 0.00 0.00 44.25 3.01
748 779 5.013913 GGACTTTTTAGGGACTAGGGACTTT 59.986 44.000 0.00 0.00 44.25 2.66
749 780 6.466904 GGACTTTTTAGGGACTAGGGACTTTT 60.467 42.308 0.00 0.00 44.25 2.27
750 781 6.919158 ACTTTTTAGGGACTAGGGACTTTTT 58.081 36.000 0.00 0.00 44.25 1.94
751 782 8.049165 ACTTTTTAGGGACTAGGGACTTTTTA 57.951 34.615 0.00 0.00 44.25 1.52
752 783 8.162085 ACTTTTTAGGGACTAGGGACTTTTTAG 58.838 37.037 0.00 0.00 44.25 1.85
753 784 7.876978 TTTTAGGGACTAGGGACTTTTTAGA 57.123 36.000 0.00 0.00 44.25 2.10
754 785 8.458951 TTTTAGGGACTAGGGACTTTTTAGAT 57.541 34.615 0.00 0.00 44.25 1.98
755 786 5.959583 AGGGACTAGGGACTTTTTAGATG 57.040 43.478 0.00 0.00 41.75 2.90
756 787 4.722279 AGGGACTAGGGACTTTTTAGATGG 59.278 45.833 0.00 0.00 41.75 3.51
757 788 4.141459 GGGACTAGGGACTTTTTAGATGGG 60.141 50.000 0.00 0.00 41.75 4.00
758 789 4.720273 GGACTAGGGACTTTTTAGATGGGA 59.280 45.833 0.00 0.00 41.75 4.37
759 790 5.396548 GGACTAGGGACTTTTTAGATGGGAC 60.397 48.000 0.00 0.00 41.75 4.46
760 791 5.351405 ACTAGGGACTTTTTAGATGGGACT 58.649 41.667 0.00 0.00 41.75 3.85
761 792 6.509386 ACTAGGGACTTTTTAGATGGGACTA 58.491 40.000 0.00 0.00 41.75 2.59
762 793 5.959583 AGGGACTTTTTAGATGGGACTAG 57.040 43.478 0.00 0.00 27.25 2.57
763 794 5.600749 AGGGACTTTTTAGATGGGACTAGA 58.399 41.667 0.00 0.00 27.25 2.43
764 795 6.030082 AGGGACTTTTTAGATGGGACTAGAA 58.970 40.000 0.00 0.00 27.25 2.10
765 796 6.504279 AGGGACTTTTTAGATGGGACTAGAAA 59.496 38.462 0.00 0.00 27.25 2.52
766 797 7.018249 AGGGACTTTTTAGATGGGACTAGAAAA 59.982 37.037 0.00 0.00 27.25 2.29
767 798 7.668469 GGGACTTTTTAGATGGGACTAGAAAAA 59.332 37.037 0.00 0.00 30.19 1.94
793 824 9.628500 AATCCTAAGATTATAGAACCAAACACC 57.372 33.333 0.00 0.00 41.05 4.16
794 825 8.153221 TCCTAAGATTATAGAACCAAACACCA 57.847 34.615 0.00 0.00 0.00 4.17
795 826 8.044908 TCCTAAGATTATAGAACCAAACACCAC 58.955 37.037 0.00 0.00 0.00 4.16
796 827 7.282450 CCTAAGATTATAGAACCAAACACCACC 59.718 40.741 0.00 0.00 0.00 4.61
797 828 6.388619 AGATTATAGAACCAAACACCACCT 57.611 37.500 0.00 0.00 0.00 4.00
798 829 6.415573 AGATTATAGAACCAAACACCACCTC 58.584 40.000 0.00 0.00 0.00 3.85
799 830 5.570205 TTATAGAACCAAACACCACCTCA 57.430 39.130 0.00 0.00 0.00 3.86
800 831 2.348411 AGAACCAAACACCACCTCAG 57.652 50.000 0.00 0.00 0.00 3.35
801 832 1.843851 AGAACCAAACACCACCTCAGA 59.156 47.619 0.00 0.00 0.00 3.27
802 833 1.947456 GAACCAAACACCACCTCAGAC 59.053 52.381 0.00 0.00 0.00 3.51
803 834 0.179056 ACCAAACACCACCTCAGACG 60.179 55.000 0.00 0.00 0.00 4.18
936 1009 0.608130 TCACGCACATTAGCCTCTGT 59.392 50.000 0.00 0.00 0.00 3.41
997 1070 4.363990 CGCCACTCTGCTCACCGT 62.364 66.667 0.00 0.00 0.00 4.83
1048 1121 3.385384 CAGAGGAGCTCGCCCACA 61.385 66.667 7.83 0.00 35.36 4.17
1164 1237 4.722855 GGCTTTGTGCGCGCCATT 62.723 61.111 30.77 0.00 43.25 3.16
1211 1284 1.377366 GAGATGCTCGACGACCCTCA 61.377 60.000 0.00 0.00 0.00 3.86
1290 1363 1.153901 CTGGCGTACGACGGACAAT 60.154 57.895 26.16 0.00 42.82 2.71
1335 1408 4.148825 GCTGGCACGACCTCGGAT 62.149 66.667 0.00 0.00 44.95 4.18
1431 1504 1.244019 GCGGTTTCCCTGCATTCAGT 61.244 55.000 0.00 0.00 38.66 3.41
1453 1526 1.741401 GGTGTCGTGCAGCATAGCA 60.741 57.895 0.00 0.00 44.44 3.49
1514 1587 2.047655 GGATGGTGAACGCGGTGA 60.048 61.111 12.47 0.00 0.00 4.02
1529 1602 4.228567 TGAACCACGGCACTGCGA 62.229 61.111 0.00 0.00 0.00 5.10
2031 2104 2.279120 CACGATCGAGCAGGAGCC 60.279 66.667 24.34 0.00 43.56 4.70
2176 2249 4.875536 TGATATGACTTCCACCAAATGACG 59.124 41.667 0.00 0.00 0.00 4.35
2189 2262 3.550030 CCAAATGACGTTCCTTGGTCAAC 60.550 47.826 12.78 0.00 45.37 3.18
2198 2271 2.930950 TCCTTGGTCAACTTCAACCTG 58.069 47.619 0.00 0.00 36.47 4.00
2199 2272 1.338020 CCTTGGTCAACTTCAACCTGC 59.662 52.381 0.00 0.00 36.47 4.85
2200 2273 2.023673 CTTGGTCAACTTCAACCTGCA 58.976 47.619 0.00 0.00 36.47 4.41
2201 2274 2.363306 TGGTCAACTTCAACCTGCAT 57.637 45.000 0.00 0.00 36.47 3.96
2202 2275 3.500448 TGGTCAACTTCAACCTGCATA 57.500 42.857 0.00 0.00 36.47 3.14
2203 2276 3.826524 TGGTCAACTTCAACCTGCATAA 58.173 40.909 0.00 0.00 36.47 1.90
2204 2277 4.211125 TGGTCAACTTCAACCTGCATAAA 58.789 39.130 0.00 0.00 36.47 1.40
2205 2278 4.646945 TGGTCAACTTCAACCTGCATAAAA 59.353 37.500 0.00 0.00 36.47 1.52
2206 2279 5.127845 TGGTCAACTTCAACCTGCATAAAAA 59.872 36.000 0.00 0.00 36.47 1.94
2207 2280 5.691754 GGTCAACTTCAACCTGCATAAAAAG 59.308 40.000 0.00 0.00 32.54 2.27
2208 2281 6.273071 GTCAACTTCAACCTGCATAAAAAGT 58.727 36.000 0.00 0.00 0.00 2.66
2209 2282 6.756542 GTCAACTTCAACCTGCATAAAAAGTT 59.243 34.615 7.95 7.95 36.27 2.66
2210 2283 6.756074 TCAACTTCAACCTGCATAAAAAGTTG 59.244 34.615 22.68 22.68 46.71 3.16
2211 2284 5.600696 ACTTCAACCTGCATAAAAAGTTGG 58.399 37.500 0.00 0.00 38.63 3.77
2212 2285 5.362430 ACTTCAACCTGCATAAAAAGTTGGA 59.638 36.000 0.00 0.00 38.63 3.53
2213 2286 5.860941 TCAACCTGCATAAAAAGTTGGAA 57.139 34.783 0.00 0.00 38.63 3.53
2214 2287 5.596845 TCAACCTGCATAAAAAGTTGGAAC 58.403 37.500 0.00 0.00 38.63 3.62
2215 2288 5.127845 TCAACCTGCATAAAAAGTTGGAACA 59.872 36.000 0.00 0.00 38.63 3.18
2216 2289 5.200368 ACCTGCATAAAAAGTTGGAACAG 57.800 39.130 0.00 0.00 42.39 3.16
2217 2290 4.892934 ACCTGCATAAAAAGTTGGAACAGA 59.107 37.500 0.00 0.00 42.39 3.41
2218 2291 5.539955 ACCTGCATAAAAAGTTGGAACAGAT 59.460 36.000 0.00 0.00 42.39 2.90
2219 2292 6.719370 ACCTGCATAAAAAGTTGGAACAGATA 59.281 34.615 0.00 0.00 42.39 1.98
2220 2293 7.397192 ACCTGCATAAAAAGTTGGAACAGATAT 59.603 33.333 0.00 0.00 42.39 1.63
2221 2294 7.703621 CCTGCATAAAAAGTTGGAACAGATATG 59.296 37.037 0.00 0.00 42.39 1.78
2222 2295 7.035004 TGCATAAAAAGTTGGAACAGATATGC 58.965 34.615 15.38 15.38 42.39 3.14
2223 2296 7.093814 TGCATAAAAAGTTGGAACAGATATGCT 60.094 33.333 19.16 0.00 42.39 3.79
2224 2297 7.761249 GCATAAAAAGTTGGAACAGATATGCTT 59.239 33.333 15.17 0.00 42.39 3.91
2227 2300 8.635765 AAAAAGTTGGAACAGATATGCTTAGA 57.364 30.769 0.00 0.00 42.39 2.10
2228 2301 8.635765 AAAAGTTGGAACAGATATGCTTAGAA 57.364 30.769 0.00 0.00 42.39 2.10
2229 2302 8.635765 AAAGTTGGAACAGATATGCTTAGAAA 57.364 30.769 0.00 0.00 42.39 2.52
2230 2303 7.617041 AGTTGGAACAGATATGCTTAGAAAC 57.383 36.000 0.00 0.00 42.39 2.78
2231 2304 7.168219 AGTTGGAACAGATATGCTTAGAAACA 58.832 34.615 0.00 0.00 42.39 2.83
2232 2305 7.831193 AGTTGGAACAGATATGCTTAGAAACAT 59.169 33.333 0.00 0.00 42.39 2.71
2233 2306 7.558161 TGGAACAGATATGCTTAGAAACATG 57.442 36.000 0.00 0.00 0.00 3.21
2234 2307 7.337938 TGGAACAGATATGCTTAGAAACATGA 58.662 34.615 0.00 0.00 0.00 3.07
2235 2308 7.280876 TGGAACAGATATGCTTAGAAACATGAC 59.719 37.037 0.00 0.00 0.00 3.06
2236 2309 7.497249 GGAACAGATATGCTTAGAAACATGACT 59.503 37.037 0.00 0.00 0.00 3.41
2237 2310 9.534565 GAACAGATATGCTTAGAAACATGACTA 57.465 33.333 0.00 0.00 0.00 2.59
2245 2318 7.974675 TGCTTAGAAACATGACTATTGTTAGC 58.025 34.615 0.00 6.41 36.32 3.09
2246 2319 7.824289 TGCTTAGAAACATGACTATTGTTAGCT 59.176 33.333 0.00 0.00 36.55 3.32
2247 2320 9.314321 GCTTAGAAACATGACTATTGTTAGCTA 57.686 33.333 0.00 0.00 36.32 3.32
2249 2322 7.778470 AGAAACATGACTATTGTTAGCTAGC 57.222 36.000 6.62 6.62 36.32 3.42
2250 2323 7.560368 AGAAACATGACTATTGTTAGCTAGCT 58.440 34.615 23.12 23.12 36.32 3.32
2251 2324 8.043710 AGAAACATGACTATTGTTAGCTAGCTT 58.956 33.333 24.88 6.85 36.32 3.74
2252 2325 9.314321 GAAACATGACTATTGTTAGCTAGCTTA 57.686 33.333 24.88 11.73 36.32 3.09
2253 2326 9.838339 AAACATGACTATTGTTAGCTAGCTTAT 57.162 29.630 24.88 13.52 36.32 1.73
2254 2327 9.838339 AACATGACTATTGTTAGCTAGCTTATT 57.162 29.630 24.88 2.55 35.61 1.40
2255 2328 9.265901 ACATGACTATTGTTAGCTAGCTTATTG 57.734 33.333 24.88 13.87 0.00 1.90
2256 2329 9.265901 CATGACTATTGTTAGCTAGCTTATTGT 57.734 33.333 24.88 16.62 0.00 2.71
2257 2330 9.838339 ATGACTATTGTTAGCTAGCTTATTGTT 57.162 29.630 24.88 6.77 0.00 2.83
2258 2331 9.667107 TGACTATTGTTAGCTAGCTTATTGTTT 57.333 29.630 24.88 5.13 0.00 2.83
2291 2364 9.463443 AAATAAGAATCAGGTTTCTTGTTTTCG 57.537 29.630 15.71 0.00 46.18 3.46
2292 2365 4.860072 AGAATCAGGTTTCTTGTTTTCGC 58.140 39.130 0.00 0.00 31.94 4.70
2293 2366 4.338118 AGAATCAGGTTTCTTGTTTTCGCA 59.662 37.500 0.00 0.00 31.94 5.10
2294 2367 4.647424 ATCAGGTTTCTTGTTTTCGCAA 57.353 36.364 0.00 0.00 0.00 4.85
2295 2368 4.027572 TCAGGTTTCTTGTTTTCGCAAG 57.972 40.909 0.00 0.00 45.18 4.01
2296 2369 3.442273 TCAGGTTTCTTGTTTTCGCAAGT 59.558 39.130 5.84 0.00 44.41 3.16
2297 2370 4.636648 TCAGGTTTCTTGTTTTCGCAAGTA 59.363 37.500 5.84 0.00 44.41 2.24
2298 2371 4.733405 CAGGTTTCTTGTTTTCGCAAGTAC 59.267 41.667 5.84 5.81 44.41 2.73
2299 2372 4.396790 AGGTTTCTTGTTTTCGCAAGTACA 59.603 37.500 0.00 0.00 44.41 2.90
2300 2373 4.497966 GGTTTCTTGTTTTCGCAAGTACAC 59.502 41.667 0.00 2.48 44.41 2.90
2301 2374 3.579147 TCTTGTTTTCGCAAGTACACG 57.421 42.857 0.00 0.00 44.41 4.49
2302 2375 2.285756 TCTTGTTTTCGCAAGTACACGG 59.714 45.455 0.00 0.00 44.41 4.94
2303 2376 0.305313 TGTTTTCGCAAGTACACGGC 59.695 50.000 0.00 0.00 39.48 5.68
2304 2377 0.385098 GTTTTCGCAAGTACACGGCC 60.385 55.000 0.00 0.00 39.48 6.13
2305 2378 0.814410 TTTTCGCAAGTACACGGCCA 60.814 50.000 2.24 0.00 39.48 5.36
2306 2379 0.604243 TTTCGCAAGTACACGGCCAT 60.604 50.000 2.24 0.00 39.48 4.40
2307 2380 1.295357 TTCGCAAGTACACGGCCATG 61.295 55.000 2.24 0.00 39.48 3.66
2308 2381 1.739929 CGCAAGTACACGGCCATGA 60.740 57.895 5.45 0.00 0.00 3.07
2309 2382 1.089481 CGCAAGTACACGGCCATGAT 61.089 55.000 5.45 0.00 0.00 2.45
2310 2383 1.804746 CGCAAGTACACGGCCATGATA 60.805 52.381 5.45 0.00 0.00 2.15
2311 2384 2.494059 GCAAGTACACGGCCATGATAT 58.506 47.619 5.45 0.00 0.00 1.63
2312 2385 3.659786 GCAAGTACACGGCCATGATATA 58.340 45.455 5.45 0.00 0.00 0.86
2313 2386 4.062293 GCAAGTACACGGCCATGATATAA 58.938 43.478 5.45 0.00 0.00 0.98
2314 2387 4.695455 GCAAGTACACGGCCATGATATAAT 59.305 41.667 5.45 0.00 0.00 1.28
2328 2401 6.470278 CATGATATAATCTCCTTGCTGTCCA 58.530 40.000 0.00 0.00 0.00 4.02
2439 2512 5.047590 TCGACTGATCCTAAAGCACAAGTTA 60.048 40.000 0.00 0.00 0.00 2.24
2441 2514 6.115448 ACTGATCCTAAAGCACAAGTTAGT 57.885 37.500 0.00 0.00 0.00 2.24
2463 2536 6.159988 AGTAACTATCAGTGTTGCTCTGAAC 58.840 40.000 5.23 0.31 43.65 3.18
3566 3712 2.745821 GTCGTTTTCCTTTATCGGCCTT 59.254 45.455 0.00 0.00 0.00 4.35
3583 3729 7.090953 TCGGCCTTTAACAATACCTTATTTG 57.909 36.000 0.00 0.00 0.00 2.32
3721 3870 1.247567 AGACCATCTTTGTTTGGGCG 58.752 50.000 0.00 0.00 46.31 6.13
3814 3970 2.356194 GCACGGGCCTTTTTGCTG 60.356 61.111 0.00 0.00 32.00 4.41
3834 3990 6.633668 GCTGGTATAAGCATAAGTGTATCG 57.366 41.667 0.00 0.00 43.01 2.92
3835 3991 5.577164 GCTGGTATAAGCATAAGTGTATCGG 59.423 44.000 0.00 0.00 43.01 4.18
3836 3992 6.571731 GCTGGTATAAGCATAAGTGTATCGGA 60.572 42.308 0.00 0.00 43.01 4.55
3837 3993 7.292713 TGGTATAAGCATAAGTGTATCGGAA 57.707 36.000 0.00 0.00 0.00 4.30
3838 3994 7.728148 TGGTATAAGCATAAGTGTATCGGAAA 58.272 34.615 0.00 0.00 0.00 3.13
3839 3995 8.372459 TGGTATAAGCATAAGTGTATCGGAAAT 58.628 33.333 0.00 0.00 0.00 2.17
3840 3996 8.656849 GGTATAAGCATAAGTGTATCGGAAATG 58.343 37.037 0.00 0.00 0.00 2.32
3841 3997 7.672983 ATAAGCATAAGTGTATCGGAAATGG 57.327 36.000 0.00 0.00 0.00 3.16
3842 3998 4.389374 AGCATAAGTGTATCGGAAATGGG 58.611 43.478 0.00 0.00 0.00 4.00
3843 3999 3.058224 GCATAAGTGTATCGGAAATGGGC 60.058 47.826 0.00 0.00 0.00 5.36
3844 4000 2.799126 AAGTGTATCGGAAATGGGCA 57.201 45.000 0.00 0.00 0.00 5.36
3845 4001 2.799126 AGTGTATCGGAAATGGGCAA 57.201 45.000 0.00 0.00 0.00 4.52
3846 4002 3.297134 AGTGTATCGGAAATGGGCAAT 57.703 42.857 0.00 0.00 0.00 3.56
3847 4003 4.431416 AGTGTATCGGAAATGGGCAATA 57.569 40.909 0.00 0.00 0.00 1.90
3848 4004 4.985538 AGTGTATCGGAAATGGGCAATAT 58.014 39.130 0.00 0.00 0.00 1.28
3849 4005 5.003804 AGTGTATCGGAAATGGGCAATATC 58.996 41.667 0.00 0.00 0.00 1.63
3850 4006 4.000325 TGTATCGGAAATGGGCAATATCG 59.000 43.478 0.00 0.00 0.00 2.92
3851 4007 1.890876 TCGGAAATGGGCAATATCGG 58.109 50.000 0.00 0.00 0.00 4.18
3852 4008 1.418264 TCGGAAATGGGCAATATCGGA 59.582 47.619 0.00 0.00 0.00 4.55
3853 4009 2.158740 TCGGAAATGGGCAATATCGGAA 60.159 45.455 0.00 0.00 0.00 4.30
3854 4010 2.621055 CGGAAATGGGCAATATCGGAAA 59.379 45.455 0.00 0.00 0.00 3.13
3855 4011 3.255642 CGGAAATGGGCAATATCGGAAAT 59.744 43.478 0.00 0.00 0.00 2.17
3856 4012 4.559153 GGAAATGGGCAATATCGGAAATG 58.441 43.478 0.00 0.00 0.00 2.32
3857 4013 4.559153 GAAATGGGCAATATCGGAAATGG 58.441 43.478 0.00 0.00 0.00 3.16
3858 4014 1.993956 TGGGCAATATCGGAAATGGG 58.006 50.000 0.00 0.00 0.00 4.00
3859 4015 0.603065 GGGCAATATCGGAAATGGGC 59.397 55.000 0.00 0.00 0.00 5.36
3860 4016 1.620822 GGCAATATCGGAAATGGGCT 58.379 50.000 0.00 0.00 0.00 5.19
3861 4017 1.270550 GGCAATATCGGAAATGGGCTG 59.729 52.381 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.554392 CGCTCTTCGTGAGATCAAGG 58.446 55.000 11.23 0.00 45.39 3.61
19 20 2.062779 CGAAACCGCTCTTCGTGAG 58.937 57.895 4.32 4.32 45.33 3.51
30 31 0.661020 AAGACAAGCCAACGAAACCG 59.339 50.000 0.00 0.00 0.00 4.44
70 71 5.060940 CACGTGCATGGTGACGATTATATAG 59.939 44.000 11.36 0.00 38.94 1.31
72 73 3.740832 CACGTGCATGGTGACGATTATAT 59.259 43.478 11.36 0.00 38.94 0.86
88 89 2.052237 CCGAACTTGTGCACGTGC 60.052 61.111 33.11 33.11 42.50 5.34
90 91 1.151777 CTGACCGAACTTGTGCACGT 61.152 55.000 13.13 1.39 0.00 4.49
91 92 1.564622 CTGACCGAACTTGTGCACG 59.435 57.895 13.13 0.65 0.00 5.34
93 94 0.746204 TTGCTGACCGAACTTGTGCA 60.746 50.000 0.00 0.00 0.00 4.57
116 117 2.534298 TGTCGGTGCAACAAACATTTG 58.466 42.857 0.98 2.77 43.62 2.32
140 141 2.242797 ATTGGCCCGCTCAAAATGGC 62.243 55.000 0.00 0.00 43.26 4.40
160 161 2.088950 GGTACGTACACAAGCCACAT 57.911 50.000 26.02 0.00 0.00 3.21
182 183 2.264461 TACGTCGGGCCGTGTACAA 61.264 57.895 27.32 8.28 41.92 2.41
230 232 2.672996 ATTGGCGCACTGACCACC 60.673 61.111 10.83 0.00 35.10 4.61
231 233 2.870372 GATTGGCGCACTGACCAC 59.130 61.111 10.83 0.00 35.10 4.16
232 234 2.741985 CGATTGGCGCACTGACCA 60.742 61.111 10.83 0.00 0.00 4.02
242 244 2.020131 CCTCAGTGATGCGATTGGC 58.980 57.895 0.00 0.00 43.96 4.52
243 245 1.769098 CGCCTCAGTGATGCGATTGG 61.769 60.000 31.27 11.87 46.36 3.16
244 246 1.640069 CGCCTCAGTGATGCGATTG 59.360 57.895 31.27 7.64 46.36 2.67
245 247 1.522355 CCGCCTCAGTGATGCGATT 60.522 57.895 34.85 0.00 46.36 3.34
246 248 2.107750 CCGCCTCAGTGATGCGAT 59.892 61.111 34.85 0.00 46.36 4.58
247 249 3.381983 ACCGCCTCAGTGATGCGA 61.382 61.111 34.85 0.00 46.36 5.10
248 250 3.190849 CACCGCCTCAGTGATGCG 61.191 66.667 29.01 29.01 43.95 4.73
249 251 1.812922 CTCACCGCCTCAGTGATGC 60.813 63.158 10.11 10.11 43.04 3.91
250 252 1.812922 GCTCACCGCCTCAGTGATG 60.813 63.158 0.00 0.00 43.04 3.07
251 253 2.581354 GCTCACCGCCTCAGTGAT 59.419 61.111 0.00 0.00 43.04 3.06
252 254 4.056125 CGCTCACCGCCTCAGTGA 62.056 66.667 0.00 0.00 41.84 3.41
297 328 1.593209 GTCGGATTAATGGCGGCGA 60.593 57.895 12.98 0.00 0.00 5.54
298 329 2.935955 GTCGGATTAATGGCGGCG 59.064 61.111 0.51 0.51 0.00 6.46
395 426 4.900154 CTGAGTCCAGGTCGCTTC 57.100 61.111 0.00 0.00 36.77 3.86
409 440 0.631753 TGGAAACAAACACCCCCTGA 59.368 50.000 0.00 0.00 37.44 3.86
410 441 1.039856 CTGGAAACAAACACCCCCTG 58.960 55.000 0.00 0.00 42.06 4.45
411 442 0.105709 CCTGGAAACAAACACCCCCT 60.106 55.000 0.00 0.00 42.06 4.79
412 443 1.118965 CCCTGGAAACAAACACCCCC 61.119 60.000 0.00 0.00 42.06 5.40
413 444 0.105913 TCCCTGGAAACAAACACCCC 60.106 55.000 0.00 0.00 42.06 4.95
414 445 1.037493 GTCCCTGGAAACAAACACCC 58.963 55.000 0.00 0.00 42.06 4.61
415 446 2.067365 AGTCCCTGGAAACAAACACC 57.933 50.000 0.00 0.00 42.06 4.16
416 447 4.465632 AAAAGTCCCTGGAAACAAACAC 57.534 40.909 0.00 0.00 42.06 3.32
435 466 7.614124 ACTTTTTCTAGTCCGTACACAAAAA 57.386 32.000 0.00 0.00 0.00 1.94
436 467 7.237920 GACTTTTTCTAGTCCGTACACAAAA 57.762 36.000 0.00 0.00 38.88 2.44
437 468 6.833342 GACTTTTTCTAGTCCGTACACAAA 57.167 37.500 0.00 0.00 38.88 2.83
447 478 7.395206 AGTCTCTAAGAGGGACTTTTTCTAGTC 59.605 40.741 3.06 0.00 41.55 2.59
448 479 7.243091 AGTCTCTAAGAGGGACTTTTTCTAGT 58.757 38.462 3.06 0.00 41.55 2.57
449 480 7.712204 AGTCTCTAAGAGGGACTTTTTCTAG 57.288 40.000 3.06 0.00 41.55 2.43
474 505 2.175284 AGTCCCTCCCGTTTGGTAAAAA 59.825 45.455 0.00 0.00 34.77 1.94
475 506 1.776063 AGTCCCTCCCGTTTGGTAAAA 59.224 47.619 0.00 0.00 34.77 1.52
476 507 1.437397 AGTCCCTCCCGTTTGGTAAA 58.563 50.000 0.00 0.00 34.77 2.01
477 508 1.437397 AAGTCCCTCCCGTTTGGTAA 58.563 50.000 0.00 0.00 34.77 2.85
478 509 1.437397 AAAGTCCCTCCCGTTTGGTA 58.563 50.000 0.00 0.00 34.77 3.25
479 510 0.554305 AAAAGTCCCTCCCGTTTGGT 59.446 50.000 0.00 0.00 34.77 3.67
480 511 1.699730 AAAAAGTCCCTCCCGTTTGG 58.300 50.000 0.00 0.00 0.00 3.28
481 512 2.817844 CCTAAAAAGTCCCTCCCGTTTG 59.182 50.000 0.00 0.00 0.00 2.93
482 513 2.224942 CCCTAAAAAGTCCCTCCCGTTT 60.225 50.000 0.00 0.00 0.00 3.60
483 514 1.353358 CCCTAAAAAGTCCCTCCCGTT 59.647 52.381 0.00 0.00 0.00 4.44
484 515 0.989602 CCCTAAAAAGTCCCTCCCGT 59.010 55.000 0.00 0.00 0.00 5.28
485 516 1.282382 TCCCTAAAAAGTCCCTCCCG 58.718 55.000 0.00 0.00 0.00 5.14
486 517 5.461516 TTATTCCCTAAAAAGTCCCTCCC 57.538 43.478 0.00 0.00 0.00 4.30
487 518 6.491383 AGTTTATTCCCTAAAAAGTCCCTCC 58.509 40.000 0.00 0.00 31.22 4.30
488 519 7.774157 CCTAGTTTATTCCCTAAAAAGTCCCTC 59.226 40.741 0.00 0.00 31.22 4.30
489 520 7.640313 CCTAGTTTATTCCCTAAAAAGTCCCT 58.360 38.462 0.00 0.00 31.22 4.20
490 521 6.320672 GCCTAGTTTATTCCCTAAAAAGTCCC 59.679 42.308 0.00 0.00 31.22 4.46
491 522 6.888088 TGCCTAGTTTATTCCCTAAAAAGTCC 59.112 38.462 0.00 0.00 31.22 3.85
492 523 7.933215 TGCCTAGTTTATTCCCTAAAAAGTC 57.067 36.000 0.00 0.00 31.22 3.01
493 524 8.895141 AATGCCTAGTTTATTCCCTAAAAAGT 57.105 30.769 0.00 0.00 31.22 2.66
494 525 9.586435 CAAATGCCTAGTTTATTCCCTAAAAAG 57.414 33.333 0.00 0.00 31.22 2.27
495 526 8.536175 CCAAATGCCTAGTTTATTCCCTAAAAA 58.464 33.333 0.00 0.00 31.22 1.94
496 527 7.125053 CCCAAATGCCTAGTTTATTCCCTAAAA 59.875 37.037 0.00 0.00 31.22 1.52
497 528 6.609616 CCCAAATGCCTAGTTTATTCCCTAAA 59.390 38.462 0.00 0.00 0.00 1.85
498 529 6.068735 TCCCAAATGCCTAGTTTATTCCCTAA 60.069 38.462 0.00 0.00 0.00 2.69
499 530 5.433712 TCCCAAATGCCTAGTTTATTCCCTA 59.566 40.000 0.00 0.00 0.00 3.53
500 531 4.231890 TCCCAAATGCCTAGTTTATTCCCT 59.768 41.667 0.00 0.00 0.00 4.20
501 532 4.341235 GTCCCAAATGCCTAGTTTATTCCC 59.659 45.833 0.00 0.00 0.00 3.97
502 533 5.201243 AGTCCCAAATGCCTAGTTTATTCC 58.799 41.667 0.00 0.00 0.00 3.01
503 534 7.875327 TTAGTCCCAAATGCCTAGTTTATTC 57.125 36.000 0.00 0.00 0.00 1.75
504 535 8.695456 CATTTAGTCCCAAATGCCTAGTTTATT 58.305 33.333 0.00 0.00 38.63 1.40
505 536 8.058847 TCATTTAGTCCCAAATGCCTAGTTTAT 58.941 33.333 4.14 0.00 42.89 1.40
506 537 7.406916 TCATTTAGTCCCAAATGCCTAGTTTA 58.593 34.615 4.14 0.00 42.89 2.01
507 538 6.252995 TCATTTAGTCCCAAATGCCTAGTTT 58.747 36.000 4.14 0.00 42.89 2.66
508 539 5.826643 TCATTTAGTCCCAAATGCCTAGTT 58.173 37.500 4.14 0.00 42.89 2.24
509 540 5.450818 TCATTTAGTCCCAAATGCCTAGT 57.549 39.130 4.14 0.00 42.89 2.57
510 541 6.122277 TCTTCATTTAGTCCCAAATGCCTAG 58.878 40.000 4.14 0.00 42.89 3.02
511 542 6.073447 TCTTCATTTAGTCCCAAATGCCTA 57.927 37.500 4.14 0.00 42.89 3.93
512 543 4.934356 TCTTCATTTAGTCCCAAATGCCT 58.066 39.130 4.14 0.00 42.89 4.75
513 544 5.418840 TCTTCTTCATTTAGTCCCAAATGCC 59.581 40.000 4.14 0.00 42.89 4.40
514 545 6.151817 AGTCTTCTTCATTTAGTCCCAAATGC 59.848 38.462 4.14 0.00 42.89 3.56
515 546 7.609532 AGAGTCTTCTTCATTTAGTCCCAAATG 59.390 37.037 2.83 2.83 44.00 2.32
516 547 7.694093 AGAGTCTTCTTCATTTAGTCCCAAAT 58.306 34.615 0.00 0.00 0.00 2.32
517 548 7.079451 AGAGTCTTCTTCATTTAGTCCCAAA 57.921 36.000 0.00 0.00 0.00 3.28
518 549 6.270000 TGAGAGTCTTCTTCATTTAGTCCCAA 59.730 38.462 0.00 0.00 32.53 4.12
519 550 5.780282 TGAGAGTCTTCTTCATTTAGTCCCA 59.220 40.000 0.00 0.00 32.53 4.37
520 551 6.287589 TGAGAGTCTTCTTCATTTAGTCCC 57.712 41.667 0.00 0.00 32.53 4.46
521 552 6.816140 CCTTGAGAGTCTTCTTCATTTAGTCC 59.184 42.308 0.00 0.00 32.53 3.85
522 553 7.607250 TCCTTGAGAGTCTTCTTCATTTAGTC 58.393 38.462 0.00 0.00 32.53 2.59
523 554 7.453126 TCTCCTTGAGAGTCTTCTTCATTTAGT 59.547 37.037 0.00 0.00 43.71 2.24
524 555 7.835822 TCTCCTTGAGAGTCTTCTTCATTTAG 58.164 38.462 0.00 0.00 43.71 1.85
525 556 7.782897 TCTCCTTGAGAGTCTTCTTCATTTA 57.217 36.000 0.00 0.00 43.71 1.40
526 557 6.678568 TCTCCTTGAGAGTCTTCTTCATTT 57.321 37.500 0.00 0.00 43.71 2.32
539 570 3.973973 TCCCAAAAAGACTCTCCTTGAGA 59.026 43.478 0.00 0.00 45.39 3.27
540 571 4.202409 AGTCCCAAAAAGACTCTCCTTGAG 60.202 45.833 0.00 0.00 40.61 3.02
541 572 3.716872 AGTCCCAAAAAGACTCTCCTTGA 59.283 43.478 0.00 0.00 40.61 3.02
542 573 4.092116 AGTCCCAAAAAGACTCTCCTTG 57.908 45.455 0.00 0.00 40.61 3.61
543 574 4.797912 AAGTCCCAAAAAGACTCTCCTT 57.202 40.909 0.00 0.00 43.77 3.36
544 575 4.797912 AAAGTCCCAAAAAGACTCTCCT 57.202 40.909 0.00 0.00 43.77 3.69
545 576 5.451937 CCAAAAAGTCCCAAAAAGACTCTCC 60.452 44.000 0.00 0.00 43.77 3.71
546 577 5.127194 ACCAAAAAGTCCCAAAAAGACTCTC 59.873 40.000 0.00 0.00 43.77 3.20
547 578 5.023452 ACCAAAAAGTCCCAAAAAGACTCT 58.977 37.500 0.00 0.00 43.77 3.24
548 579 5.339008 ACCAAAAAGTCCCAAAAAGACTC 57.661 39.130 0.00 0.00 43.77 3.36
549 580 5.955959 AGTACCAAAAAGTCCCAAAAAGACT 59.044 36.000 0.00 0.00 46.50 3.24
550 581 6.216801 AGTACCAAAAAGTCCCAAAAAGAC 57.783 37.500 0.00 0.00 34.31 3.01
551 582 6.860790 AAGTACCAAAAAGTCCCAAAAAGA 57.139 33.333 0.00 0.00 0.00 2.52
552 583 7.065324 GGAAAAGTACCAAAAAGTCCCAAAAAG 59.935 37.037 0.00 0.00 0.00 2.27
553 584 6.879993 GGAAAAGTACCAAAAAGTCCCAAAAA 59.120 34.615 0.00 0.00 0.00 1.94
554 585 6.013639 TGGAAAAGTACCAAAAAGTCCCAAAA 60.014 34.615 0.00 0.00 34.25 2.44
555 586 5.484290 TGGAAAAGTACCAAAAAGTCCCAAA 59.516 36.000 0.00 0.00 34.25 3.28
556 587 5.024118 TGGAAAAGTACCAAAAAGTCCCAA 58.976 37.500 0.00 0.00 34.25 4.12
557 588 4.611367 TGGAAAAGTACCAAAAAGTCCCA 58.389 39.130 0.00 0.00 34.25 4.37
558 589 5.601583 TTGGAAAAGTACCAAAAAGTCCC 57.398 39.130 0.00 0.00 43.22 4.46
567 598 4.027437 GGGGCATTATTGGAAAAGTACCA 58.973 43.478 0.00 0.00 35.47 3.25
568 599 4.286707 AGGGGCATTATTGGAAAAGTACC 58.713 43.478 0.00 0.00 0.00 3.34
569 600 4.341235 GGAGGGGCATTATTGGAAAAGTAC 59.659 45.833 0.00 0.00 0.00 2.73
570 601 4.017037 TGGAGGGGCATTATTGGAAAAGTA 60.017 41.667 0.00 0.00 0.00 2.24
571 602 3.245948 TGGAGGGGCATTATTGGAAAAGT 60.246 43.478 0.00 0.00 0.00 2.66
572 603 3.373830 TGGAGGGGCATTATTGGAAAAG 58.626 45.455 0.00 0.00 0.00 2.27
573 604 3.481559 TGGAGGGGCATTATTGGAAAA 57.518 42.857 0.00 0.00 0.00 2.29
574 605 3.307506 CATGGAGGGGCATTATTGGAAA 58.692 45.455 0.00 0.00 0.00 3.13
575 606 2.961510 CATGGAGGGGCATTATTGGAA 58.038 47.619 0.00 0.00 0.00 3.53
576 607 1.481055 GCATGGAGGGGCATTATTGGA 60.481 52.381 0.00 0.00 0.00 3.53
577 608 0.971386 GCATGGAGGGGCATTATTGG 59.029 55.000 0.00 0.00 0.00 3.16
578 609 1.342174 GTGCATGGAGGGGCATTATTG 59.658 52.381 0.00 0.00 42.75 1.90
579 610 1.708341 GTGCATGGAGGGGCATTATT 58.292 50.000 0.00 0.00 42.75 1.40
580 611 0.178953 GGTGCATGGAGGGGCATTAT 60.179 55.000 0.00 0.00 42.75 1.28
581 612 1.229927 GGTGCATGGAGGGGCATTA 59.770 57.895 0.00 0.00 42.75 1.90
582 613 2.042639 GGTGCATGGAGGGGCATT 60.043 61.111 0.00 0.00 42.75 3.56
583 614 4.147587 GGGTGCATGGAGGGGCAT 62.148 66.667 0.00 0.00 42.75 4.40
585 616 3.684369 AATGGGTGCATGGAGGGGC 62.684 63.158 0.00 0.00 0.00 5.80
586 617 1.759299 CAATGGGTGCATGGAGGGG 60.759 63.158 0.00 0.00 0.00 4.79
587 618 1.759299 CCAATGGGTGCATGGAGGG 60.759 63.158 0.00 0.00 36.27 4.30
588 619 2.428925 GCCAATGGGTGCATGGAGG 61.429 63.158 7.48 0.00 36.27 4.30
589 620 2.428925 GGCCAATGGGTGCATGGAG 61.429 63.158 7.48 0.00 36.27 3.86
590 621 2.364056 GGCCAATGGGTGCATGGA 60.364 61.111 7.48 0.00 36.27 3.41
591 622 3.472726 GGGCCAATGGGTGCATGG 61.473 66.667 4.39 0.00 37.29 3.66
592 623 3.840594 CGGGCCAATGGGTGCATG 61.841 66.667 4.39 0.00 36.17 4.06
612 643 3.037549 ACAATCAAACAACACCATGGGT 58.962 40.909 18.09 8.43 35.62 4.51
613 644 3.749665 ACAATCAAACAACACCATGGG 57.250 42.857 18.09 7.72 0.00 4.00
614 645 7.727331 AAATAACAATCAAACAACACCATGG 57.273 32.000 11.19 11.19 0.00 3.66
615 646 9.649024 GAAAAATAACAATCAAACAACACCATG 57.351 29.630 0.00 0.00 0.00 3.66
616 647 9.612066 AGAAAAATAACAATCAAACAACACCAT 57.388 25.926 0.00 0.00 0.00 3.55
635 666 9.520515 CATGTTGCCCCTAGTATATAGAAAAAT 57.479 33.333 0.00 0.00 0.00 1.82
636 667 7.942341 CCATGTTGCCCCTAGTATATAGAAAAA 59.058 37.037 0.00 0.00 0.00 1.94
637 668 7.073215 ACCATGTTGCCCCTAGTATATAGAAAA 59.927 37.037 0.00 0.00 0.00 2.29
638 669 6.561070 ACCATGTTGCCCCTAGTATATAGAAA 59.439 38.462 0.00 0.00 0.00 2.52
639 670 6.088819 ACCATGTTGCCCCTAGTATATAGAA 58.911 40.000 0.00 0.00 0.00 2.10
640 671 5.661565 ACCATGTTGCCCCTAGTATATAGA 58.338 41.667 0.00 0.00 0.00 1.98
641 672 5.483937 TGACCATGTTGCCCCTAGTATATAG 59.516 44.000 0.00 0.00 0.00 1.31
642 673 5.407936 TGACCATGTTGCCCCTAGTATATA 58.592 41.667 0.00 0.00 0.00 0.86
643 674 4.239495 TGACCATGTTGCCCCTAGTATAT 58.761 43.478 0.00 0.00 0.00 0.86
644 675 3.659841 TGACCATGTTGCCCCTAGTATA 58.340 45.455 0.00 0.00 0.00 1.47
645 676 2.487775 TGACCATGTTGCCCCTAGTAT 58.512 47.619 0.00 0.00 0.00 2.12
646 677 1.959710 TGACCATGTTGCCCCTAGTA 58.040 50.000 0.00 0.00 0.00 1.82
647 678 1.298953 ATGACCATGTTGCCCCTAGT 58.701 50.000 0.00 0.00 0.00 2.57
648 679 2.442236 AATGACCATGTTGCCCCTAG 57.558 50.000 0.00 0.00 0.00 3.02
649 680 2.917713 AAATGACCATGTTGCCCCTA 57.082 45.000 0.00 0.00 0.00 3.53
650 681 2.917713 TAAATGACCATGTTGCCCCT 57.082 45.000 0.00 0.00 0.00 4.79
651 682 5.356426 GTTATTAAATGACCATGTTGCCCC 58.644 41.667 0.00 0.00 0.00 5.80
652 683 5.128663 AGGTTATTAAATGACCATGTTGCCC 59.871 40.000 6.26 0.00 41.10 5.36
653 684 6.096846 AGAGGTTATTAAATGACCATGTTGCC 59.903 38.462 6.26 0.00 41.10 4.52
654 685 7.100458 AGAGGTTATTAAATGACCATGTTGC 57.900 36.000 6.26 0.00 41.10 4.17
655 686 8.840321 CCTAGAGGTTATTAAATGACCATGTTG 58.160 37.037 6.26 0.00 41.10 3.33
656 687 8.778059 TCCTAGAGGTTATTAAATGACCATGTT 58.222 33.333 6.26 0.00 41.10 2.71
657 688 8.331931 TCCTAGAGGTTATTAAATGACCATGT 57.668 34.615 6.26 0.00 41.10 3.21
658 689 9.277783 CTTCCTAGAGGTTATTAAATGACCATG 57.722 37.037 6.26 0.00 41.10 3.66
659 690 8.440771 CCTTCCTAGAGGTTATTAAATGACCAT 58.559 37.037 6.26 0.00 41.10 3.55
660 691 7.147373 CCCTTCCTAGAGGTTATTAAATGACCA 60.147 40.741 6.26 0.00 41.10 4.02
661 692 7.072076 TCCCTTCCTAGAGGTTATTAAATGACC 59.928 40.741 0.00 0.00 39.09 4.02
662 693 7.932491 GTCCCTTCCTAGAGGTTATTAAATGAC 59.068 40.741 0.00 0.00 34.88 3.06
663 694 7.849904 AGTCCCTTCCTAGAGGTTATTAAATGA 59.150 37.037 0.00 0.00 34.88 2.57
664 695 8.035448 AGTCCCTTCCTAGAGGTTATTAAATG 57.965 38.462 0.00 0.00 34.88 2.32
665 696 9.739737 TTAGTCCCTTCCTAGAGGTTATTAAAT 57.260 33.333 0.00 0.00 34.88 1.40
666 697 9.210228 CTTAGTCCCTTCCTAGAGGTTATTAAA 57.790 37.037 0.00 0.00 34.88 1.52
667 698 7.788385 CCTTAGTCCCTTCCTAGAGGTTATTAA 59.212 40.741 0.00 0.00 34.88 1.40
668 699 7.131542 TCCTTAGTCCCTTCCTAGAGGTTATTA 59.868 40.741 0.00 0.00 34.88 0.98
669 700 6.067781 TCCTTAGTCCCTTCCTAGAGGTTATT 60.068 42.308 0.00 0.00 34.88 1.40
670 701 5.439059 TCCTTAGTCCCTTCCTAGAGGTTAT 59.561 44.000 0.00 0.00 34.88 1.89
671 702 4.797919 TCCTTAGTCCCTTCCTAGAGGTTA 59.202 45.833 0.00 0.00 34.88 2.85
672 703 3.601537 TCCTTAGTCCCTTCCTAGAGGTT 59.398 47.826 0.00 0.00 34.88 3.50
673 704 3.052717 GTCCTTAGTCCCTTCCTAGAGGT 60.053 52.174 0.00 0.00 34.88 3.85
674 705 3.205733 AGTCCTTAGTCCCTTCCTAGAGG 59.794 52.174 0.00 0.00 36.52 3.69
675 706 4.529716 AGTCCTTAGTCCCTTCCTAGAG 57.470 50.000 0.00 0.00 0.00 2.43
676 707 4.969136 AAGTCCTTAGTCCCTTCCTAGA 57.031 45.455 0.00 0.00 0.00 2.43
677 708 6.375830 AAAAAGTCCTTAGTCCCTTCCTAG 57.624 41.667 0.00 0.00 0.00 3.02
678 709 7.021251 ACTAAAAAGTCCTTAGTCCCTTCCTA 58.979 38.462 0.00 0.00 35.16 2.94
679 710 5.850583 ACTAAAAAGTCCTTAGTCCCTTCCT 59.149 40.000 0.00 0.00 35.16 3.36
680 711 6.124316 ACTAAAAAGTCCTTAGTCCCTTCC 57.876 41.667 0.00 0.00 35.16 3.46
687 718 9.327628 GTTTTCAGAGACTAAAAAGTCCTTAGT 57.672 33.333 2.00 0.00 41.28 2.24
688 719 9.326413 TGTTTTCAGAGACTAAAAAGTCCTTAG 57.674 33.333 2.00 0.00 39.50 2.18
689 720 9.675464 TTGTTTTCAGAGACTAAAAAGTCCTTA 57.325 29.630 2.00 0.00 39.50 2.69
690 721 8.575649 TTGTTTTCAGAGACTAAAAAGTCCTT 57.424 30.769 2.00 0.00 39.50 3.36
691 722 8.459635 GTTTGTTTTCAGAGACTAAAAAGTCCT 58.540 33.333 2.00 0.00 39.50 3.85
692 723 8.241367 TGTTTGTTTTCAGAGACTAAAAAGTCC 58.759 33.333 2.00 0.00 39.50 3.85
693 724 9.278734 CTGTTTGTTTTCAGAGACTAAAAAGTC 57.721 33.333 0.00 0.00 39.00 3.01
694 725 8.244113 CCTGTTTGTTTTCAGAGACTAAAAAGT 58.756 33.333 0.00 0.00 34.02 2.66
695 726 7.702348 CCCTGTTTGTTTTCAGAGACTAAAAAG 59.298 37.037 0.00 0.00 34.02 2.27
696 727 7.394923 TCCCTGTTTGTTTTCAGAGACTAAAAA 59.605 33.333 0.00 0.00 34.02 1.94
697 728 6.887545 TCCCTGTTTGTTTTCAGAGACTAAAA 59.112 34.615 0.00 0.00 34.02 1.52
698 729 6.419791 TCCCTGTTTGTTTTCAGAGACTAAA 58.580 36.000 0.00 0.00 34.02 1.85
699 730 5.996644 TCCCTGTTTGTTTTCAGAGACTAA 58.003 37.500 0.00 0.00 34.02 2.24
700 731 5.454755 CCTCCCTGTTTGTTTTCAGAGACTA 60.455 44.000 0.00 0.00 34.02 2.59
701 732 4.455606 CTCCCTGTTTGTTTTCAGAGACT 58.544 43.478 0.00 0.00 34.02 3.24
702 733 3.565902 CCTCCCTGTTTGTTTTCAGAGAC 59.434 47.826 0.00 0.00 34.02 3.36
703 734 3.435026 CCCTCCCTGTTTGTTTTCAGAGA 60.435 47.826 0.00 0.00 34.02 3.10
704 735 2.887152 CCCTCCCTGTTTGTTTTCAGAG 59.113 50.000 0.00 0.00 34.02 3.35
705 736 2.512056 TCCCTCCCTGTTTGTTTTCAGA 59.488 45.455 0.00 0.00 34.02 3.27
706 737 2.623416 GTCCCTCCCTGTTTGTTTTCAG 59.377 50.000 0.00 0.00 0.00 3.02
707 738 2.243736 AGTCCCTCCCTGTTTGTTTTCA 59.756 45.455 0.00 0.00 0.00 2.69
708 739 2.945456 AGTCCCTCCCTGTTTGTTTTC 58.055 47.619 0.00 0.00 0.00 2.29
709 740 3.398318 AAGTCCCTCCCTGTTTGTTTT 57.602 42.857 0.00 0.00 0.00 2.43
710 741 3.398318 AAAGTCCCTCCCTGTTTGTTT 57.602 42.857 0.00 0.00 0.00 2.83
711 742 3.398318 AAAAGTCCCTCCCTGTTTGTT 57.602 42.857 0.00 0.00 0.00 2.83
712 743 3.398318 AAAAAGTCCCTCCCTGTTTGT 57.602 42.857 0.00 0.00 0.00 2.83
713 744 3.826729 CCTAAAAAGTCCCTCCCTGTTTG 59.173 47.826 0.00 0.00 0.00 2.93
714 745 3.181422 CCCTAAAAAGTCCCTCCCTGTTT 60.181 47.826 0.00 0.00 0.00 2.83
715 746 2.378886 CCCTAAAAAGTCCCTCCCTGTT 59.621 50.000 0.00 0.00 0.00 3.16
716 747 1.993301 CCCTAAAAAGTCCCTCCCTGT 59.007 52.381 0.00 0.00 0.00 4.00
717 748 2.026169 GTCCCTAAAAAGTCCCTCCCTG 60.026 54.545 0.00 0.00 0.00 4.45
718 749 2.157833 AGTCCCTAAAAAGTCCCTCCCT 60.158 50.000 0.00 0.00 0.00 4.20
719 750 2.276391 AGTCCCTAAAAAGTCCCTCCC 58.724 52.381 0.00 0.00 0.00 4.30
720 751 3.455177 CCTAGTCCCTAAAAAGTCCCTCC 59.545 52.174 0.00 0.00 0.00 4.30
721 752 3.455177 CCCTAGTCCCTAAAAAGTCCCTC 59.545 52.174 0.00 0.00 0.00 4.30
722 753 3.080153 TCCCTAGTCCCTAAAAAGTCCCT 59.920 47.826 0.00 0.00 0.00 4.20
723 754 3.199508 GTCCCTAGTCCCTAAAAAGTCCC 59.800 52.174 0.00 0.00 0.00 4.46
724 755 4.102598 AGTCCCTAGTCCCTAAAAAGTCC 58.897 47.826 0.00 0.00 0.00 3.85
725 756 5.758790 AAGTCCCTAGTCCCTAAAAAGTC 57.241 43.478 0.00 0.00 0.00 3.01
726 757 6.526056 AAAAGTCCCTAGTCCCTAAAAAGT 57.474 37.500 0.00 0.00 0.00 2.66
727 758 8.380867 TCTAAAAAGTCCCTAGTCCCTAAAAAG 58.619 37.037 0.00 0.00 0.00 2.27
728 759 8.278988 TCTAAAAAGTCCCTAGTCCCTAAAAA 57.721 34.615 0.00 0.00 0.00 1.94
729 760 7.876978 TCTAAAAAGTCCCTAGTCCCTAAAA 57.123 36.000 0.00 0.00 0.00 1.52
730 761 7.092578 CCATCTAAAAAGTCCCTAGTCCCTAAA 60.093 40.741 0.00 0.00 0.00 1.85
731 762 6.386050 CCATCTAAAAAGTCCCTAGTCCCTAA 59.614 42.308 0.00 0.00 0.00 2.69
732 763 5.903589 CCATCTAAAAAGTCCCTAGTCCCTA 59.096 44.000 0.00 0.00 0.00 3.53
733 764 4.722279 CCATCTAAAAAGTCCCTAGTCCCT 59.278 45.833 0.00 0.00 0.00 4.20
734 765 4.141459 CCCATCTAAAAAGTCCCTAGTCCC 60.141 50.000 0.00 0.00 0.00 4.46
735 766 4.720273 TCCCATCTAAAAAGTCCCTAGTCC 59.280 45.833 0.00 0.00 0.00 3.85
736 767 5.425862 AGTCCCATCTAAAAAGTCCCTAGTC 59.574 44.000 0.00 0.00 0.00 2.59
737 768 5.351405 AGTCCCATCTAAAAAGTCCCTAGT 58.649 41.667 0.00 0.00 0.00 2.57
738 769 5.959583 AGTCCCATCTAAAAAGTCCCTAG 57.040 43.478 0.00 0.00 0.00 3.02
739 770 6.748969 TCTAGTCCCATCTAAAAAGTCCCTA 58.251 40.000 0.00 0.00 0.00 3.53
740 771 5.600749 TCTAGTCCCATCTAAAAAGTCCCT 58.399 41.667 0.00 0.00 0.00 4.20
741 772 5.952347 TCTAGTCCCATCTAAAAAGTCCC 57.048 43.478 0.00 0.00 0.00 4.46
742 773 8.631480 TTTTTCTAGTCCCATCTAAAAAGTCC 57.369 34.615 0.00 0.00 0.00 3.85
767 798 9.628500 GGTGTTTGGTTCTATAATCTTAGGATT 57.372 33.333 5.33 5.33 43.67 3.01
768 799 8.778059 TGGTGTTTGGTTCTATAATCTTAGGAT 58.222 33.333 0.00 0.00 0.00 3.24
769 800 8.044908 GTGGTGTTTGGTTCTATAATCTTAGGA 58.955 37.037 0.00 0.00 0.00 2.94
770 801 7.282450 GGTGGTGTTTGGTTCTATAATCTTAGG 59.718 40.741 0.00 0.00 0.00 2.69
771 802 8.047310 AGGTGGTGTTTGGTTCTATAATCTTAG 58.953 37.037 0.00 0.00 0.00 2.18
772 803 7.924541 AGGTGGTGTTTGGTTCTATAATCTTA 58.075 34.615 0.00 0.00 0.00 2.10
773 804 6.790319 AGGTGGTGTTTGGTTCTATAATCTT 58.210 36.000 0.00 0.00 0.00 2.40
774 805 6.012858 TGAGGTGGTGTTTGGTTCTATAATCT 60.013 38.462 0.00 0.00 0.00 2.40
775 806 6.177610 TGAGGTGGTGTTTGGTTCTATAATC 58.822 40.000 0.00 0.00 0.00 1.75
776 807 6.012858 TCTGAGGTGGTGTTTGGTTCTATAAT 60.013 38.462 0.00 0.00 0.00 1.28
777 808 5.308497 TCTGAGGTGGTGTTTGGTTCTATAA 59.692 40.000 0.00 0.00 0.00 0.98
778 809 4.841813 TCTGAGGTGGTGTTTGGTTCTATA 59.158 41.667 0.00 0.00 0.00 1.31
779 810 3.650942 TCTGAGGTGGTGTTTGGTTCTAT 59.349 43.478 0.00 0.00 0.00 1.98
780 811 3.042682 TCTGAGGTGGTGTTTGGTTCTA 58.957 45.455 0.00 0.00 0.00 2.10
781 812 1.843851 TCTGAGGTGGTGTTTGGTTCT 59.156 47.619 0.00 0.00 0.00 3.01
782 813 1.947456 GTCTGAGGTGGTGTTTGGTTC 59.053 52.381 0.00 0.00 0.00 3.62
783 814 1.745827 CGTCTGAGGTGGTGTTTGGTT 60.746 52.381 0.00 0.00 0.00 3.67
784 815 0.179056 CGTCTGAGGTGGTGTTTGGT 60.179 55.000 0.00 0.00 0.00 3.67
785 816 0.179056 ACGTCTGAGGTGGTGTTTGG 60.179 55.000 1.67 0.00 0.00 3.28
786 817 1.217882 GACGTCTGAGGTGGTGTTTG 58.782 55.000 8.70 0.00 0.00 2.93
787 818 0.828022 TGACGTCTGAGGTGGTGTTT 59.172 50.000 17.92 0.00 0.00 2.83
788 819 0.389391 CTGACGTCTGAGGTGGTGTT 59.611 55.000 17.92 0.00 0.00 3.32
789 820 0.467474 TCTGACGTCTGAGGTGGTGT 60.467 55.000 19.81 0.00 0.00 4.16
790 821 0.039074 GTCTGACGTCTGAGGTGGTG 60.039 60.000 23.51 0.00 0.00 4.17
791 822 1.516365 CGTCTGACGTCTGAGGTGGT 61.516 60.000 27.15 0.00 36.74 4.16
792 823 1.210413 CGTCTGACGTCTGAGGTGG 59.790 63.158 27.15 14.31 36.74 4.61
793 824 1.210413 CCGTCTGACGTCTGAGGTG 59.790 63.158 30.44 22.18 40.58 4.00
794 825 1.228184 ACCGTCTGACGTCTGAGGT 60.228 57.895 30.44 28.14 40.58 3.85
795 826 1.210413 CACCGTCTGACGTCTGAGG 59.790 63.158 28.01 28.01 40.58 3.86
796 827 1.210413 CCACCGTCTGACGTCTGAG 59.790 63.158 26.35 15.78 40.58 3.35
797 828 2.916052 GCCACCGTCTGACGTCTGA 61.916 63.158 26.35 19.81 40.58 3.27
798 829 2.430921 GCCACCGTCTGACGTCTG 60.431 66.667 26.35 19.97 40.58 3.51
799 830 3.681835 GGCCACCGTCTGACGTCT 61.682 66.667 26.35 10.25 40.58 4.18
800 831 4.736896 GGGCCACCGTCTGACGTC 62.737 72.222 26.35 9.11 40.58 4.34
802 833 4.003788 AAGGGCCACCGTCTGACG 62.004 66.667 22.49 22.49 43.47 4.35
803 834 2.358737 CAAGGGCCACCGTCTGAC 60.359 66.667 6.18 0.00 43.47 3.51
817 848 0.109132 GCGGAAATTGGGCAGTCAAG 60.109 55.000 0.00 0.00 0.00 3.02
936 1009 1.533033 TGCGTGTGGAGAGAAGGGA 60.533 57.895 0.00 0.00 0.00 4.20
1019 1092 1.999071 CTCCTCTGCCTTCTCCGTCG 61.999 65.000 0.00 0.00 0.00 5.12
1048 1121 2.505982 CTCGACGGGGATGCCAAT 59.494 61.111 5.30 0.00 0.00 3.16
1164 1237 1.982395 CCGTGCCCAGTAGAGACCA 60.982 63.158 0.00 0.00 0.00 4.02
1211 1284 0.320771 CGCACTGTTGGGAGCTTACT 60.321 55.000 0.00 0.00 37.91 2.24
1273 1346 1.444724 CATTGTCCGTCGTACGCCA 60.445 57.895 11.24 0.00 40.91 5.69
1335 1408 3.589654 CTCTTCGAAGGTGCGCCCA 62.590 63.158 24.37 2.10 34.66 5.36
1431 1504 0.250081 TATGCTGCACGACACCACAA 60.250 50.000 3.57 0.00 0.00 3.33
1529 1602 4.008933 GCTCCTGACACCCTGCGT 62.009 66.667 0.00 0.00 0.00 5.24
2014 2087 2.279120 GGCTCCTGCTCGATCGTG 60.279 66.667 15.94 14.19 39.59 4.35
2015 2088 3.893763 CGGCTCCTGCTCGATCGT 61.894 66.667 15.94 0.00 39.59 3.73
2016 2089 3.586961 TCGGCTCCTGCTCGATCG 61.587 66.667 9.36 9.36 37.12 3.69
2017 2090 2.026879 GTCGGCTCCTGCTCGATC 59.973 66.667 0.00 0.00 41.29 3.69
2018 2091 1.680522 AATGTCGGCTCCTGCTCGAT 61.681 55.000 0.00 0.00 41.29 3.59
2019 2092 2.351244 AATGTCGGCTCCTGCTCGA 61.351 57.895 0.00 0.00 38.71 4.04
2020 2093 2.169789 CAATGTCGGCTCCTGCTCG 61.170 63.158 0.00 0.00 39.59 5.03
2021 2094 1.817099 CCAATGTCGGCTCCTGCTC 60.817 63.158 0.00 0.00 39.59 4.26
2022 2095 2.270205 CCAATGTCGGCTCCTGCT 59.730 61.111 0.00 0.00 39.59 4.24
2023 2096 2.045926 ACCAATGTCGGCTCCTGC 60.046 61.111 0.00 0.00 38.76 4.85
2024 2097 1.746615 CCACCAATGTCGGCTCCTG 60.747 63.158 0.00 0.00 0.00 3.86
2025 2098 2.671070 CCACCAATGTCGGCTCCT 59.329 61.111 0.00 0.00 0.00 3.69
2026 2099 3.134127 GCCACCAATGTCGGCTCC 61.134 66.667 3.24 0.00 42.78 4.70
2027 2100 3.499737 CGCCACCAATGTCGGCTC 61.500 66.667 8.27 0.00 43.95 4.70
2030 2103 2.233605 TACTCCGCCACCAATGTCGG 62.234 60.000 0.00 0.00 42.96 4.79
2031 2104 1.082117 GTACTCCGCCACCAATGTCG 61.082 60.000 0.00 0.00 0.00 4.35
2069 2142 4.353437 GTCCTTCGTGTCGCCCGT 62.353 66.667 0.00 0.00 0.00 5.28
2075 2148 2.100631 CCGGCATGTCCTTCGTGTC 61.101 63.158 0.00 0.00 35.64 3.67
2114 2187 3.501349 TGTTCTGAGCACTCTCCTACTT 58.499 45.455 0.00 0.00 38.58 2.24
2118 2191 2.703007 ACTTTGTTCTGAGCACTCTCCT 59.297 45.455 0.00 0.00 38.58 3.69
2176 2249 3.066760 CAGGTTGAAGTTGACCAAGGAAC 59.933 47.826 7.54 0.00 38.42 3.62
2189 2262 5.841810 TCCAACTTTTTATGCAGGTTGAAG 58.158 37.500 13.16 7.26 39.39 3.02
2198 2271 7.260603 AGCATATCTGTTCCAACTTTTTATGC 58.739 34.615 13.46 13.46 36.60 3.14
2201 2274 9.733556 TCTAAGCATATCTGTTCCAACTTTTTA 57.266 29.630 0.00 0.00 0.00 1.52
2202 2275 8.635765 TCTAAGCATATCTGTTCCAACTTTTT 57.364 30.769 0.00 0.00 0.00 1.94
2203 2276 8.635765 TTCTAAGCATATCTGTTCCAACTTTT 57.364 30.769 0.00 0.00 0.00 2.27
2204 2277 8.515414 GTTTCTAAGCATATCTGTTCCAACTTT 58.485 33.333 0.00 0.00 0.00 2.66
2205 2278 7.665559 TGTTTCTAAGCATATCTGTTCCAACTT 59.334 33.333 0.00 0.00 0.00 2.66
2206 2279 7.168219 TGTTTCTAAGCATATCTGTTCCAACT 58.832 34.615 0.00 0.00 0.00 3.16
2207 2280 7.377766 TGTTTCTAAGCATATCTGTTCCAAC 57.622 36.000 0.00 0.00 0.00 3.77
2208 2281 7.828717 TCATGTTTCTAAGCATATCTGTTCCAA 59.171 33.333 0.00 0.00 0.00 3.53
2209 2282 7.280876 GTCATGTTTCTAAGCATATCTGTTCCA 59.719 37.037 0.00 0.00 0.00 3.53
2210 2283 7.497249 AGTCATGTTTCTAAGCATATCTGTTCC 59.503 37.037 0.00 0.00 0.00 3.62
2211 2284 8.430801 AGTCATGTTTCTAAGCATATCTGTTC 57.569 34.615 0.00 0.00 0.00 3.18
2219 2292 8.616076 GCTAACAATAGTCATGTTTCTAAGCAT 58.384 33.333 6.90 0.00 41.11 3.79
2220 2293 7.824289 AGCTAACAATAGTCATGTTTCTAAGCA 59.176 33.333 11.96 0.00 39.43 3.91
2221 2294 8.202745 AGCTAACAATAGTCATGTTTCTAAGC 57.797 34.615 0.00 1.28 41.11 3.09
2223 2296 9.314321 GCTAGCTAACAATAGTCATGTTTCTAA 57.686 33.333 7.70 0.00 41.11 2.10
2224 2297 8.696374 AGCTAGCTAACAATAGTCATGTTTCTA 58.304 33.333 17.69 0.00 41.11 2.10
2225 2298 7.560368 AGCTAGCTAACAATAGTCATGTTTCT 58.440 34.615 17.69 0.00 41.11 2.52
2226 2299 7.778470 AGCTAGCTAACAATAGTCATGTTTC 57.222 36.000 17.69 0.00 41.11 2.78
2227 2300 9.838339 ATAAGCTAGCTAACAATAGTCATGTTT 57.162 29.630 19.70 0.00 41.11 2.83
2228 2301 9.838339 AATAAGCTAGCTAACAATAGTCATGTT 57.162 29.630 19.70 0.00 43.14 2.71
2229 2302 9.265901 CAATAAGCTAGCTAACAATAGTCATGT 57.734 33.333 19.70 0.00 0.00 3.21
2230 2303 9.265901 ACAATAAGCTAGCTAACAATAGTCATG 57.734 33.333 19.70 6.95 0.00 3.07
2231 2304 9.838339 AACAATAAGCTAGCTAACAATAGTCAT 57.162 29.630 19.70 0.00 0.00 3.06
2232 2305 9.667107 AAACAATAAGCTAGCTAACAATAGTCA 57.333 29.630 19.70 0.00 0.00 3.41
2265 2338 9.463443 CGAAAACAAGAAACCTGATTCTTATTT 57.537 29.630 2.60 2.12 43.94 1.40
2266 2339 7.595130 GCGAAAACAAGAAACCTGATTCTTATT 59.405 33.333 2.60 0.00 45.45 1.40
2267 2340 7.084486 GCGAAAACAAGAAACCTGATTCTTAT 58.916 34.615 2.60 0.00 45.45 1.73
2268 2341 6.038825 TGCGAAAACAAGAAACCTGATTCTTA 59.961 34.615 2.60 0.00 45.45 2.10
2270 2343 4.338118 TGCGAAAACAAGAAACCTGATTCT 59.662 37.500 0.00 0.00 41.34 2.40
2271 2344 4.606961 TGCGAAAACAAGAAACCTGATTC 58.393 39.130 0.00 0.00 0.00 2.52
2272 2345 4.647424 TGCGAAAACAAGAAACCTGATT 57.353 36.364 0.00 0.00 0.00 2.57
2273 2346 4.647424 TTGCGAAAACAAGAAACCTGAT 57.353 36.364 0.00 0.00 0.00 2.90
2283 2356 1.268133 GCCGTGTACTTGCGAAAACAA 60.268 47.619 0.00 0.00 0.00 2.83
2284 2357 0.305313 GCCGTGTACTTGCGAAAACA 59.695 50.000 0.00 0.00 0.00 2.83
2285 2358 0.385098 GGCCGTGTACTTGCGAAAAC 60.385 55.000 0.00 0.00 0.00 2.43
2286 2359 0.814410 TGGCCGTGTACTTGCGAAAA 60.814 50.000 0.00 0.00 0.00 2.29
2287 2360 0.604243 ATGGCCGTGTACTTGCGAAA 60.604 50.000 0.00 0.00 0.00 3.46
2288 2361 1.004320 ATGGCCGTGTACTTGCGAA 60.004 52.632 0.00 0.00 0.00 4.70
2289 2362 1.739929 CATGGCCGTGTACTTGCGA 60.740 57.895 17.42 0.00 0.00 5.10
2290 2363 1.089481 ATCATGGCCGTGTACTTGCG 61.089 55.000 24.24 0.00 0.00 4.85
2291 2364 1.948104 TATCATGGCCGTGTACTTGC 58.052 50.000 24.24 0.00 0.00 4.01
2292 2365 6.166279 AGATTATATCATGGCCGTGTACTTG 58.834 40.000 24.24 0.00 0.00 3.16
2293 2366 6.360370 AGATTATATCATGGCCGTGTACTT 57.640 37.500 24.24 10.58 0.00 2.24
2294 2367 5.105310 GGAGATTATATCATGGCCGTGTACT 60.105 44.000 24.24 12.75 0.00 2.73
2295 2368 5.105310 AGGAGATTATATCATGGCCGTGTAC 60.105 44.000 24.24 3.41 0.00 2.90
2296 2369 5.023452 AGGAGATTATATCATGGCCGTGTA 58.977 41.667 24.24 15.65 0.00 2.90
2297 2370 3.840666 AGGAGATTATATCATGGCCGTGT 59.159 43.478 24.24 14.02 0.00 4.49
2298 2371 4.478206 AGGAGATTATATCATGGCCGTG 57.522 45.455 19.62 19.62 0.00 4.94
2299 2372 4.836825 CAAGGAGATTATATCATGGCCGT 58.163 43.478 0.00 0.00 0.00 5.68
2300 2373 3.624861 GCAAGGAGATTATATCATGGCCG 59.375 47.826 0.00 0.00 0.00 6.13
2301 2374 4.639310 CAGCAAGGAGATTATATCATGGCC 59.361 45.833 0.00 0.00 0.00 5.36
2302 2375 5.251764 ACAGCAAGGAGATTATATCATGGC 58.748 41.667 0.00 0.00 0.00 4.40
2303 2376 5.879223 GGACAGCAAGGAGATTATATCATGG 59.121 44.000 0.00 0.00 0.00 3.66
2304 2377 6.470278 TGGACAGCAAGGAGATTATATCATG 58.530 40.000 0.00 0.00 0.00 3.07
2305 2378 6.271857 ACTGGACAGCAAGGAGATTATATCAT 59.728 38.462 0.00 0.00 0.00 2.45
2306 2379 5.604231 ACTGGACAGCAAGGAGATTATATCA 59.396 40.000 0.00 0.00 0.00 2.15
2307 2380 6.107901 ACTGGACAGCAAGGAGATTATATC 57.892 41.667 0.00 0.00 0.00 1.63
2308 2381 6.126652 ACAACTGGACAGCAAGGAGATTATAT 60.127 38.462 0.00 0.00 0.00 0.86
2309 2382 5.189736 ACAACTGGACAGCAAGGAGATTATA 59.810 40.000 0.00 0.00 0.00 0.98
2310 2383 4.018960 ACAACTGGACAGCAAGGAGATTAT 60.019 41.667 0.00 0.00 0.00 1.28
2311 2384 3.327757 ACAACTGGACAGCAAGGAGATTA 59.672 43.478 0.00 0.00 0.00 1.75
2312 2385 2.107204 ACAACTGGACAGCAAGGAGATT 59.893 45.455 0.00 0.00 0.00 2.40
2313 2386 1.701847 ACAACTGGACAGCAAGGAGAT 59.298 47.619 0.00 0.00 0.00 2.75
2314 2387 1.131638 ACAACTGGACAGCAAGGAGA 58.868 50.000 0.00 0.00 0.00 3.71
2328 2401 7.972832 TTTCTCCGTACATTGAAATACAACT 57.027 32.000 0.00 0.00 41.52 3.16
2439 2512 5.984695 TCAGAGCAACACTGATAGTTACT 57.015 39.130 0.00 0.00 39.10 2.24
2441 2514 6.346477 AGTTCAGAGCAACACTGATAGTTA 57.654 37.500 0.00 0.00 42.68 2.24
2538 2612 5.365619 ACCCTGTTTGTACACTTACTTCAG 58.634 41.667 0.00 0.00 0.00 3.02
2545 2619 4.141233 ACGTAACCCTGTTTGTACACTT 57.859 40.909 0.00 0.00 0.00 3.16
2546 2620 3.825143 ACGTAACCCTGTTTGTACACT 57.175 42.857 0.00 0.00 0.00 3.55
2547 2621 3.248363 GGAACGTAACCCTGTTTGTACAC 59.752 47.826 0.00 0.00 0.00 2.90
2548 2622 3.118482 TGGAACGTAACCCTGTTTGTACA 60.118 43.478 8.82 0.00 0.00 2.90
2879 2957 9.593134 GATTAAGATTGCACCCTAGATAGTATG 57.407 37.037 0.00 0.00 0.00 2.39
3246 3382 5.467035 TTGGTCCCTGTTTCATCATTTTC 57.533 39.130 0.00 0.00 0.00 2.29
3324 3460 4.365514 TTTTGTATGGTCTCCTGCAGAA 57.634 40.909 17.39 0.00 30.72 3.02
3391 3531 8.621532 TGAAGAGTTGTTAAAAGATACATGCT 57.378 30.769 0.00 0.00 0.00 3.79
3392 3532 9.282247 CATGAAGAGTTGTTAAAAGATACATGC 57.718 33.333 0.00 0.00 0.00 4.06
3583 3729 7.197703 TCATGCATTTATTCATGTCATGTGTC 58.802 34.615 12.54 1.02 40.54 3.67
3779 3931 4.283678 CGTGCATTGTAACGGAAGAAAAA 58.716 39.130 0.00 0.00 36.17 1.94
3814 3970 8.656849 CATTTCCGATACACTTATGCTTATACC 58.343 37.037 0.00 0.00 0.00 2.73
3829 3985 3.374058 CCGATATTGCCCATTTCCGATAC 59.626 47.826 0.00 0.00 0.00 2.24
3833 3989 1.890876 TCCGATATTGCCCATTTCCG 58.109 50.000 0.00 0.00 0.00 4.30
3834 3990 4.559153 CATTTCCGATATTGCCCATTTCC 58.441 43.478 0.00 0.00 0.00 3.13
3835 3991 4.559153 CCATTTCCGATATTGCCCATTTC 58.441 43.478 0.00 0.00 0.00 2.17
3836 3992 3.324556 CCCATTTCCGATATTGCCCATTT 59.675 43.478 0.00 0.00 0.00 2.32
3837 3993 2.899256 CCCATTTCCGATATTGCCCATT 59.101 45.455 0.00 0.00 0.00 3.16
3838 3994 2.528564 CCCATTTCCGATATTGCCCAT 58.471 47.619 0.00 0.00 0.00 4.00
3839 3995 1.993956 CCCATTTCCGATATTGCCCA 58.006 50.000 0.00 0.00 0.00 5.36
3840 3996 0.603065 GCCCATTTCCGATATTGCCC 59.397 55.000 0.00 0.00 0.00 5.36
3841 3997 1.270550 CAGCCCATTTCCGATATTGCC 59.729 52.381 0.00 0.00 0.00 4.52
3842 3998 2.030805 GTCAGCCCATTTCCGATATTGC 60.031 50.000 0.00 0.00 0.00 3.56
3843 3999 3.251729 CAGTCAGCCCATTTCCGATATTG 59.748 47.826 0.00 0.00 0.00 1.90
3844 4000 3.136443 TCAGTCAGCCCATTTCCGATATT 59.864 43.478 0.00 0.00 0.00 1.28
3845 4001 2.705658 TCAGTCAGCCCATTTCCGATAT 59.294 45.455 0.00 0.00 0.00 1.63
3846 4002 2.115427 TCAGTCAGCCCATTTCCGATA 58.885 47.619 0.00 0.00 0.00 2.92
3847 4003 0.911769 TCAGTCAGCCCATTTCCGAT 59.088 50.000 0.00 0.00 0.00 4.18
3848 4004 0.036388 GTCAGTCAGCCCATTTCCGA 60.036 55.000 0.00 0.00 0.00 4.55
3849 4005 1.361668 CGTCAGTCAGCCCATTTCCG 61.362 60.000 0.00 0.00 0.00 4.30
3850 4006 0.036388 TCGTCAGTCAGCCCATTTCC 60.036 55.000 0.00 0.00 0.00 3.13
3851 4007 1.808411 TTCGTCAGTCAGCCCATTTC 58.192 50.000 0.00 0.00 0.00 2.17
3852 4008 2.489329 CAATTCGTCAGTCAGCCCATTT 59.511 45.455 0.00 0.00 0.00 2.32
3853 4009 2.086869 CAATTCGTCAGTCAGCCCATT 58.913 47.619 0.00 0.00 0.00 3.16
3854 4010 1.003580 ACAATTCGTCAGTCAGCCCAT 59.996 47.619 0.00 0.00 0.00 4.00
3855 4011 0.396435 ACAATTCGTCAGTCAGCCCA 59.604 50.000 0.00 0.00 0.00 5.36
3856 4012 0.798776 CACAATTCGTCAGTCAGCCC 59.201 55.000 0.00 0.00 0.00 5.19
3857 4013 1.795768 TCACAATTCGTCAGTCAGCC 58.204 50.000 0.00 0.00 0.00 4.85
3858 4014 3.740590 CATTCACAATTCGTCAGTCAGC 58.259 45.455 0.00 0.00 0.00 4.26
3859 4015 3.425359 GGCATTCACAATTCGTCAGTCAG 60.425 47.826 0.00 0.00 0.00 3.51
3860 4016 2.483877 GGCATTCACAATTCGTCAGTCA 59.516 45.455 0.00 0.00 0.00 3.41
3861 4017 2.483877 TGGCATTCACAATTCGTCAGTC 59.516 45.455 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.