Multiple sequence alignment - TraesCS7D01G175000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G175000 chr7D 100.000 4460 0 0 1 4460 127293297 127288838 0.000000e+00 8237.0
1 TraesCS7D01G175000 chr7D 85.388 438 38 13 3899 4318 311192998 311193427 8.860000e-117 431.0
2 TraesCS7D01G175000 chr7D 80.072 557 79 20 1108 1651 24521345 24520808 7.000000e-103 385.0
3 TraesCS7D01G175000 chr7D 75.260 578 108 23 1081 1651 24920235 24919686 4.460000e-60 243.0
4 TraesCS7D01G175000 chr7D 94.853 136 7 0 4319 4454 169458702 169458567 3.490000e-51 213.0
5 TraesCS7D01G175000 chr7D 88.776 98 7 3 2942 3037 24518112 24518017 2.820000e-22 117.0
6 TraesCS7D01G175000 chr7A 94.597 2906 126 10 894 3785 128051300 128048412 0.000000e+00 4468.0
7 TraesCS7D01G175000 chr7A 91.393 976 64 7 2277 3246 128024373 128023412 0.000000e+00 1319.0
8 TraesCS7D01G175000 chr7A 92.544 684 34 10 3780 4460 128048275 128047606 0.000000e+00 965.0
9 TraesCS7D01G175000 chr7A 86.041 437 46 8 3468 3897 127924290 127923862 5.260000e-124 455.0
10 TraesCS7D01G175000 chr7A 83.908 435 46 13 3899 4318 360345182 360345607 1.160000e-105 394.0
11 TraesCS7D01G175000 chr7A 79.928 558 78 23 1108 1651 25133716 25133179 3.260000e-101 379.0
12 TraesCS7D01G175000 chr7A 81.735 438 46 13 3901 4323 88983102 88982684 7.150000e-88 335.0
13 TraesCS7D01G175000 chr7A 76.440 573 126 6 1082 1651 25360452 25359886 7.250000e-78 302.0
14 TraesCS7D01G175000 chr7A 80.791 354 35 12 295 640 128051768 128051440 3.450000e-61 246.0
15 TraesCS7D01G175000 chr7A 96.748 123 4 0 2104 2226 128040264 128040142 5.850000e-49 206.0
16 TraesCS7D01G175000 chr7A 93.893 131 7 1 3339 3469 128022995 128022866 3.520000e-46 196.0
17 TraesCS7D01G175000 chr7A 73.019 530 132 10 2095 2617 25359481 25358956 4.590000e-40 176.0
18 TraesCS7D01G175000 chr7A 87.755 98 8 3 2942 3037 25131568 25131473 1.310000e-20 111.0
19 TraesCS7D01G175000 chr7A 78.519 135 27 2 3281 3414 25046988 25046855 2.210000e-13 87.9
20 TraesCS7D01G175000 chr7B 93.701 2937 140 21 717 3637 89203948 89206855 0.000000e+00 4357.0
21 TraesCS7D01G175000 chr7B 85.071 422 41 11 3899 4304 568424092 568424507 1.150000e-110 411.0
22 TraesCS7D01G175000 chr7B 80.381 367 42 15 3976 4323 36447428 36447073 7.410000e-63 252.0
23 TraesCS7D01G175000 chr7B 90.556 180 14 1 3674 3853 568422831 568423007 7.460000e-58 235.0
24 TraesCS7D01G175000 chr7B 94.737 133 5 1 4324 4454 88660943 88660811 5.850000e-49 206.0
25 TraesCS7D01G175000 chr7B 91.912 136 11 0 4319 4454 231335967 231336102 1.640000e-44 191.0
26 TraesCS7D01G175000 chr3A 85.882 425 38 10 3899 4307 746220624 746220206 2.460000e-117 433.0
27 TraesCS7D01G175000 chr3A 89.444 180 16 1 3674 3853 746221882 746221706 1.610000e-54 224.0
28 TraesCS7D01G175000 chr1A 85.142 424 38 13 3899 4304 544931488 544931904 1.150000e-110 411.0
29 TraesCS7D01G175000 chr6A 76.417 547 102 18 1108 1651 1831055 1831577 2.040000e-68 270.0
30 TraesCS7D01G175000 chr6A 89.583 48 5 0 1360 1407 1921981 1922028 1.340000e-05 62.1
31 TraesCS7D01G175000 chr6A 87.273 55 6 1 568 622 126715890 126715943 1.340000e-05 62.1
32 TraesCS7D01G175000 chr4A 75.606 578 100 26 1081 1651 708626391 708625848 9.580000e-62 248.0
33 TraesCS7D01G175000 chr5A 82.273 220 39 0 1082 1301 692704350 692704569 1.640000e-44 191.0
34 TraesCS7D01G175000 chr1D 79.130 115 23 1 340 453 414778521 414778407 1.330000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G175000 chr7D 127288838 127293297 4459 True 8237.0 8237 100.000000 1 4460 1 chr7D.!!$R2 4459
1 TraesCS7D01G175000 chr7D 24518017 24521345 3328 True 251.0 385 84.424000 1108 3037 2 chr7D.!!$R4 1929
2 TraesCS7D01G175000 chr7D 24919686 24920235 549 True 243.0 243 75.260000 1081 1651 1 chr7D.!!$R1 570
3 TraesCS7D01G175000 chr7A 128047606 128051768 4162 True 1893.0 4468 89.310667 295 4460 3 chr7A.!!$R8 4165
4 TraesCS7D01G175000 chr7A 128022866 128024373 1507 True 757.5 1319 92.643000 2277 3469 2 chr7A.!!$R7 1192
5 TraesCS7D01G175000 chr7A 25131473 25133716 2243 True 245.0 379 83.841500 1108 3037 2 chr7A.!!$R5 1929
6 TraesCS7D01G175000 chr7A 25358956 25360452 1496 True 239.0 302 74.729500 1082 2617 2 chr7A.!!$R6 1535
7 TraesCS7D01G175000 chr7B 89203948 89206855 2907 False 4357.0 4357 93.701000 717 3637 1 chr7B.!!$F1 2920
8 TraesCS7D01G175000 chr7B 568422831 568424507 1676 False 323.0 411 87.813500 3674 4304 2 chr7B.!!$F3 630
9 TraesCS7D01G175000 chr3A 746220206 746221882 1676 True 328.5 433 87.663000 3674 4307 2 chr3A.!!$R1 633
10 TraesCS7D01G175000 chr6A 1831055 1831577 522 False 270.0 270 76.417000 1108 1651 1 chr6A.!!$F1 543
11 TraesCS7D01G175000 chr4A 708625848 708626391 543 True 248.0 248 75.606000 1081 1651 1 chr4A.!!$R1 570

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
815 840 0.032615 TGGGCCCTTTCAGTTGTTGT 60.033 50.0 25.7 0.0 0.0 3.32 F
961 986 0.038709 CTAGATAGCCAGCCGAGCAC 60.039 60.0 0.0 0.0 0.0 4.40 F
2008 3611 0.105778 CCGGAGCCTCATCTTCTTCC 59.894 60.0 0.0 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1704 3286 0.179111 CCTTCAATAGCTCGTCGCCA 60.179 55.000 0.0 0.0 40.39 5.69 R
2775 4390 1.006102 ACCGTTGCTGAGAAGACCG 60.006 57.895 0.0 0.0 0.00 4.79 R
3638 5593 0.325272 TGCCCCTGTAACAACGCATA 59.675 50.000 0.0 0.0 0.00 3.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.685017 TCCCAGCGATGGTCAGCT 60.685 61.111 20.04 0.00 45.74 4.24
21 22 3.639445 AGCGATGGTCAGCTGGAT 58.361 55.556 15.13 3.58 42.82 3.41
22 23 2.826337 AGCGATGGTCAGCTGGATA 58.174 52.632 15.13 0.11 42.82 2.59
23 24 1.123077 AGCGATGGTCAGCTGGATAA 58.877 50.000 15.13 0.00 42.82 1.75
24 25 1.696336 AGCGATGGTCAGCTGGATAAT 59.304 47.619 15.13 2.79 42.82 1.28
25 26 2.105477 AGCGATGGTCAGCTGGATAATT 59.895 45.455 15.13 0.00 42.82 1.40
26 27 3.324846 AGCGATGGTCAGCTGGATAATTA 59.675 43.478 15.13 0.00 42.82 1.40
27 28 4.065088 GCGATGGTCAGCTGGATAATTAA 58.935 43.478 15.13 0.00 0.00 1.40
28 29 4.083802 GCGATGGTCAGCTGGATAATTAAC 60.084 45.833 15.13 1.25 0.00 2.01
29 30 5.056480 CGATGGTCAGCTGGATAATTAACA 58.944 41.667 15.13 1.05 0.00 2.41
30 31 5.702670 CGATGGTCAGCTGGATAATTAACAT 59.297 40.000 15.13 6.72 0.00 2.71
31 32 6.128445 CGATGGTCAGCTGGATAATTAACATC 60.128 42.308 15.13 14.63 0.00 3.06
32 33 5.376625 TGGTCAGCTGGATAATTAACATCC 58.623 41.667 15.13 9.94 42.08 3.51
33 34 4.762251 GGTCAGCTGGATAATTAACATCCC 59.238 45.833 15.13 2.35 41.20 3.85
34 35 4.762251 GTCAGCTGGATAATTAACATCCCC 59.238 45.833 15.13 6.55 41.20 4.81
35 36 4.415179 TCAGCTGGATAATTAACATCCCCA 59.585 41.667 15.13 0.00 41.20 4.96
36 37 5.074929 TCAGCTGGATAATTAACATCCCCAT 59.925 40.000 15.13 0.18 41.20 4.00
37 38 5.776716 CAGCTGGATAATTAACATCCCCATT 59.223 40.000 5.57 0.00 41.20 3.16
38 39 6.268387 CAGCTGGATAATTAACATCCCCATTT 59.732 38.462 5.57 0.00 41.20 2.32
39 40 6.845975 AGCTGGATAATTAACATCCCCATTTT 59.154 34.615 13.06 0.00 41.20 1.82
40 41 7.015584 AGCTGGATAATTAACATCCCCATTTTC 59.984 37.037 13.06 0.00 41.20 2.29
41 42 7.015584 GCTGGATAATTAACATCCCCATTTTCT 59.984 37.037 13.06 0.00 41.20 2.52
42 43 8.852671 TGGATAATTAACATCCCCATTTTCTT 57.147 30.769 13.06 0.00 41.20 2.52
43 44 9.278011 TGGATAATTAACATCCCCATTTTCTTT 57.722 29.630 13.06 0.00 41.20 2.52
47 48 7.686438 ATTAACATCCCCATTTTCTTTTTGC 57.314 32.000 0.00 0.00 0.00 3.68
48 49 4.980339 ACATCCCCATTTTCTTTTTGCT 57.020 36.364 0.00 0.00 0.00 3.91
49 50 5.308976 ACATCCCCATTTTCTTTTTGCTT 57.691 34.783 0.00 0.00 0.00 3.91
50 51 5.065235 ACATCCCCATTTTCTTTTTGCTTG 58.935 37.500 0.00 0.00 0.00 4.01
51 52 4.769345 TCCCCATTTTCTTTTTGCTTGT 57.231 36.364 0.00 0.00 0.00 3.16
52 53 4.702831 TCCCCATTTTCTTTTTGCTTGTC 58.297 39.130 0.00 0.00 0.00 3.18
53 54 3.494251 CCCCATTTTCTTTTTGCTTGTCG 59.506 43.478 0.00 0.00 0.00 4.35
54 55 3.059665 CCCATTTTCTTTTTGCTTGTCGC 60.060 43.478 0.00 0.00 39.77 5.19
55 56 3.803778 CCATTTTCTTTTTGCTTGTCGCT 59.196 39.130 0.00 0.00 40.11 4.93
56 57 4.981674 CCATTTTCTTTTTGCTTGTCGCTA 59.018 37.500 0.00 0.00 40.11 4.26
57 58 5.461737 CCATTTTCTTTTTGCTTGTCGCTAA 59.538 36.000 0.00 0.00 40.11 3.09
58 59 6.019156 CCATTTTCTTTTTGCTTGTCGCTAAA 60.019 34.615 0.00 0.00 40.63 1.85
59 60 6.952935 TTTTCTTTTTGCTTGTCGCTAAAA 57.047 29.167 6.24 6.24 46.08 1.52
66 67 7.661127 TTTTGCTTGTCGCTAAAAGTATAGA 57.339 32.000 0.00 0.00 39.70 1.98
67 68 6.887376 TTGCTTGTCGCTAAAAGTATAGAG 57.113 37.500 0.00 0.00 40.11 2.43
68 69 4.804139 TGCTTGTCGCTAAAAGTATAGAGC 59.196 41.667 0.00 0.00 40.11 4.09
73 74 2.059541 GCTAAAAGTATAGAGCGGCGG 58.940 52.381 9.78 0.00 0.00 6.13
74 75 2.288030 GCTAAAAGTATAGAGCGGCGGA 60.288 50.000 9.78 0.00 0.00 5.54
75 76 2.510768 AAAAGTATAGAGCGGCGGAG 57.489 50.000 9.78 0.00 0.00 4.63
104 105 3.545481 GACGTGGCGTCGCTGATG 61.545 66.667 18.11 11.75 46.56 3.07
105 106 3.964221 GACGTGGCGTCGCTGATGA 62.964 63.158 18.11 0.00 46.56 2.92
106 107 3.250323 CGTGGCGTCGCTGATGAG 61.250 66.667 18.11 0.00 0.00 2.90
107 108 2.887568 GTGGCGTCGCTGATGAGG 60.888 66.667 18.11 0.00 0.00 3.86
108 109 4.147449 TGGCGTCGCTGATGAGGG 62.147 66.667 18.11 0.00 0.00 4.30
110 111 4.521062 GCGTCGCTGATGAGGGCT 62.521 66.667 10.68 0.00 32.12 5.19
111 112 2.185350 CGTCGCTGATGAGGGCTT 59.815 61.111 0.00 0.00 32.12 4.35
112 113 1.448540 CGTCGCTGATGAGGGCTTT 60.449 57.895 0.00 0.00 32.12 3.51
113 114 1.021390 CGTCGCTGATGAGGGCTTTT 61.021 55.000 0.00 0.00 32.12 2.27
114 115 1.168714 GTCGCTGATGAGGGCTTTTT 58.831 50.000 0.00 0.00 32.12 1.94
115 116 2.356135 GTCGCTGATGAGGGCTTTTTA 58.644 47.619 0.00 0.00 32.12 1.52
116 117 2.747446 GTCGCTGATGAGGGCTTTTTAA 59.253 45.455 0.00 0.00 32.12 1.52
117 118 3.190535 GTCGCTGATGAGGGCTTTTTAAA 59.809 43.478 0.00 0.00 32.12 1.52
118 119 4.016444 TCGCTGATGAGGGCTTTTTAAAT 58.984 39.130 0.00 0.00 32.12 1.40
119 120 4.462483 TCGCTGATGAGGGCTTTTTAAATT 59.538 37.500 0.00 0.00 32.12 1.82
120 121 4.563976 CGCTGATGAGGGCTTTTTAAATTG 59.436 41.667 0.00 0.00 0.00 2.32
121 122 5.482006 GCTGATGAGGGCTTTTTAAATTGT 58.518 37.500 0.00 0.00 0.00 2.71
122 123 5.934043 GCTGATGAGGGCTTTTTAAATTGTT 59.066 36.000 0.00 0.00 0.00 2.83
123 124 6.091305 GCTGATGAGGGCTTTTTAAATTGTTC 59.909 38.462 0.00 0.00 0.00 3.18
124 125 7.060383 TGATGAGGGCTTTTTAAATTGTTCA 57.940 32.000 0.00 0.00 0.00 3.18
125 126 7.504403 TGATGAGGGCTTTTTAAATTGTTCAA 58.496 30.769 0.00 0.00 0.00 2.69
126 127 8.156165 TGATGAGGGCTTTTTAAATTGTTCAAT 58.844 29.630 0.00 0.00 0.00 2.57
127 128 9.651913 GATGAGGGCTTTTTAAATTGTTCAATA 57.348 29.630 0.00 0.00 0.00 1.90
128 129 8.825667 TGAGGGCTTTTTAAATTGTTCAATAC 57.174 30.769 0.00 0.00 0.00 1.89
129 130 7.875554 TGAGGGCTTTTTAAATTGTTCAATACC 59.124 33.333 0.00 0.00 0.00 2.73
130 131 7.973402 AGGGCTTTTTAAATTGTTCAATACCT 58.027 30.769 0.00 0.00 0.00 3.08
131 132 8.094548 AGGGCTTTTTAAATTGTTCAATACCTC 58.905 33.333 0.00 0.00 0.00 3.85
132 133 8.094548 GGGCTTTTTAAATTGTTCAATACCTCT 58.905 33.333 0.00 0.00 0.00 3.69
141 142 9.965902 AAATTGTTCAATACCTCTAGAATCTGT 57.034 29.630 0.00 0.00 0.00 3.41
144 145 7.717568 TGTTCAATACCTCTAGAATCTGTAGC 58.282 38.462 0.00 0.00 0.00 3.58
145 146 7.561722 TGTTCAATACCTCTAGAATCTGTAGCT 59.438 37.037 0.00 0.00 0.00 3.32
146 147 9.069082 GTTCAATACCTCTAGAATCTGTAGCTA 57.931 37.037 0.00 0.00 0.00 3.32
147 148 9.642343 TTCAATACCTCTAGAATCTGTAGCTAA 57.358 33.333 0.00 0.00 0.00 3.09
148 149 9.815306 TCAATACCTCTAGAATCTGTAGCTAAT 57.185 33.333 0.00 0.00 0.00 1.73
181 182 9.665719 TGAACATAATACAAACTTAGATGCTCA 57.334 29.630 0.00 0.00 0.00 4.26
182 183 9.922305 GAACATAATACAAACTTAGATGCTCAC 57.078 33.333 0.00 0.00 0.00 3.51
183 184 9.448438 AACATAATACAAACTTAGATGCTCACA 57.552 29.630 0.00 0.00 0.00 3.58
184 185 9.618890 ACATAATACAAACTTAGATGCTCACAT 57.381 29.630 0.00 0.00 39.98 3.21
194 195 9.698309 AACTTAGATGCTCACATATACATACAC 57.302 33.333 0.00 0.00 36.35 2.90
195 196 8.860088 ACTTAGATGCTCACATATACATACACA 58.140 33.333 0.00 0.00 36.35 3.72
196 197 9.866798 CTTAGATGCTCACATATACATACACAT 57.133 33.333 0.00 0.00 36.35 3.21
199 200 8.806146 AGATGCTCACATATACATACACATACA 58.194 33.333 0.00 0.00 36.35 2.29
200 201 9.591792 GATGCTCACATATACATACACATACAT 57.408 33.333 0.00 0.00 36.35 2.29
201 202 9.948964 ATGCTCACATATACATACACATACATT 57.051 29.630 0.00 0.00 33.67 2.71
202 203 9.777297 TGCTCACATATACATACACATACATTT 57.223 29.630 0.00 0.00 0.00 2.32
213 214 9.639563 ACATACACATACATTTAATCCCATGAA 57.360 29.630 0.00 0.00 0.00 2.57
214 215 9.897744 CATACACATACATTTAATCCCATGAAC 57.102 33.333 0.00 0.00 0.00 3.18
215 216 7.026631 ACACATACATTTAATCCCATGAACG 57.973 36.000 0.00 0.00 0.00 3.95
216 217 6.601613 ACACATACATTTAATCCCATGAACGT 59.398 34.615 0.00 0.00 0.00 3.99
217 218 6.912051 CACATACATTTAATCCCATGAACGTG 59.088 38.462 0.00 0.00 0.00 4.49
218 219 6.601613 ACATACATTTAATCCCATGAACGTGT 59.398 34.615 0.00 0.00 0.00 4.49
219 220 5.309323 ACATTTAATCCCATGAACGTGTG 57.691 39.130 0.00 0.00 0.00 3.82
220 221 3.840890 TTTAATCCCATGAACGTGTGC 57.159 42.857 0.00 0.00 0.00 4.57
221 222 2.481289 TAATCCCATGAACGTGTGCA 57.519 45.000 0.00 0.00 0.00 4.57
222 223 1.838112 AATCCCATGAACGTGTGCAT 58.162 45.000 0.00 0.00 0.00 3.96
223 224 1.097232 ATCCCATGAACGTGTGCATG 58.903 50.000 13.11 13.11 41.11 4.06
224 225 1.153978 CCCATGAACGTGTGCATGC 60.154 57.895 11.82 11.82 40.33 4.06
225 226 1.580437 CCATGAACGTGTGCATGCA 59.420 52.632 18.46 18.46 40.33 3.96
226 227 0.730155 CCATGAACGTGTGCATGCAC 60.730 55.000 38.00 38.00 46.33 4.57
235 236 2.408333 GTGCATGCACATCCTACCC 58.592 57.895 39.12 14.13 45.53 3.69
236 237 1.103398 GTGCATGCACATCCTACCCC 61.103 60.000 39.12 13.39 45.53 4.95
237 238 1.281199 TGCATGCACATCCTACCCCT 61.281 55.000 18.46 0.00 0.00 4.79
238 239 0.764890 GCATGCACATCCTACCCCTA 59.235 55.000 14.21 0.00 0.00 3.53
239 240 1.352352 GCATGCACATCCTACCCCTAT 59.648 52.381 14.21 0.00 0.00 2.57
240 241 2.877300 GCATGCACATCCTACCCCTATG 60.877 54.545 14.21 0.00 0.00 2.23
241 242 1.434188 TGCACATCCTACCCCTATGG 58.566 55.000 0.00 0.00 41.37 2.74
262 263 4.048241 GGCACCTCTAAGATACTGTGAC 57.952 50.000 0.00 0.00 0.00 3.67
263 264 3.447586 GGCACCTCTAAGATACTGTGACA 59.552 47.826 0.00 0.00 32.05 3.58
264 265 4.081642 GGCACCTCTAAGATACTGTGACAA 60.082 45.833 0.00 0.00 32.05 3.18
265 266 4.865365 GCACCTCTAAGATACTGTGACAAC 59.135 45.833 0.00 0.00 0.00 3.32
266 267 5.566826 GCACCTCTAAGATACTGTGACAACA 60.567 44.000 0.00 0.00 34.34 3.33
267 268 5.864474 CACCTCTAAGATACTGTGACAACAC 59.136 44.000 0.00 0.00 46.09 3.32
278 279 3.304382 GTGACAACACAACGTCTTGAG 57.696 47.619 3.50 0.00 45.32 3.02
279 280 2.927477 GTGACAACACAACGTCTTGAGA 59.073 45.455 3.50 0.00 45.32 3.27
280 281 3.555956 GTGACAACACAACGTCTTGAGAT 59.444 43.478 3.50 0.00 45.32 2.75
281 282 4.034048 GTGACAACACAACGTCTTGAGATT 59.966 41.667 3.50 0.00 45.32 2.40
282 283 4.033932 TGACAACACAACGTCTTGAGATTG 59.966 41.667 3.50 3.31 33.18 2.67
283 284 4.188462 ACAACACAACGTCTTGAGATTGA 58.812 39.130 3.50 0.00 0.00 2.57
284 285 4.034048 ACAACACAACGTCTTGAGATTGAC 59.966 41.667 3.50 0.00 0.00 3.18
285 286 3.792401 ACACAACGTCTTGAGATTGACA 58.208 40.909 3.50 0.00 33.18 3.58
286 287 4.188462 ACACAACGTCTTGAGATTGACAA 58.812 39.130 3.50 0.00 33.18 3.18
287 288 4.634004 ACACAACGTCTTGAGATTGACAAA 59.366 37.500 3.50 0.00 33.18 2.83
288 289 5.200454 CACAACGTCTTGAGATTGACAAAG 58.800 41.667 0.00 0.00 33.18 2.77
289 290 4.876107 ACAACGTCTTGAGATTGACAAAGT 59.124 37.500 0.00 0.00 33.18 2.66
290 291 5.200454 CAACGTCTTGAGATTGACAAAGTG 58.800 41.667 0.00 0.00 33.18 3.16
291 292 4.693283 ACGTCTTGAGATTGACAAAGTGA 58.307 39.130 0.00 0.00 33.18 3.41
292 293 4.747108 ACGTCTTGAGATTGACAAAGTGAG 59.253 41.667 0.00 0.00 33.18 3.51
293 294 4.376819 CGTCTTGAGATTGACAAAGTGAGC 60.377 45.833 0.00 0.00 33.18 4.26
297 298 3.561310 TGAGATTGACAAAGTGAGCACAC 59.439 43.478 6.11 6.11 46.24 3.82
328 329 2.017138 TGACAAAGTCAGCACAACGA 57.983 45.000 0.00 0.00 37.67 3.85
329 330 2.560504 TGACAAAGTCAGCACAACGAT 58.439 42.857 0.00 0.00 37.67 3.73
335 336 2.838736 AGTCAGCACAACGATTTGAGT 58.161 42.857 0.00 0.00 36.48 3.41
338 339 3.968724 GTCAGCACAACGATTTGAGTTTC 59.031 43.478 0.00 0.00 36.48 2.78
344 345 5.275881 GCACAACGATTTGAGTTTCACAAAG 60.276 40.000 0.00 0.00 39.90 2.77
346 347 6.021468 CACAACGATTTGAGTTTCACAAAGTC 60.021 38.462 0.00 0.00 39.90 3.01
347 348 5.811399 ACGATTTGAGTTTCACAAAGTCA 57.189 34.783 2.93 2.93 46.21 3.41
376 377 3.255149 ACACCTTCGTAGTCGACAAGAAT 59.745 43.478 19.50 0.00 46.03 2.40
377 378 3.608506 CACCTTCGTAGTCGACAAGAATG 59.391 47.826 19.50 16.94 46.03 2.67
403 404 4.990543 TTCTCATTGAACACACATCGTC 57.009 40.909 0.00 0.00 0.00 4.20
405 406 4.376146 TCTCATTGAACACACATCGTCAA 58.624 39.130 0.00 0.00 0.00 3.18
411 412 0.951558 ACACACATCGTCAAAAGGCC 59.048 50.000 0.00 0.00 0.00 5.19
412 413 1.238439 CACACATCGTCAAAAGGCCT 58.762 50.000 0.00 0.00 0.00 5.19
413 414 1.069022 CACACATCGTCAAAAGGCCTG 60.069 52.381 5.69 0.00 0.00 4.85
414 415 1.202758 ACACATCGTCAAAAGGCCTGA 60.203 47.619 5.69 0.00 0.00 3.86
417 418 3.057315 CACATCGTCAAAAGGCCTGAAAT 60.057 43.478 5.69 0.00 0.00 2.17
466 467 4.770795 CCAAGTCTATGACAAACCCTAGG 58.229 47.826 0.06 0.06 34.60 3.02
468 469 3.385115 AGTCTATGACAAACCCTAGGGG 58.615 50.000 31.70 16.49 41.21 4.79
470 471 3.974642 GTCTATGACAAACCCTAGGGGAT 59.025 47.826 31.70 17.39 37.51 3.85
479 480 2.616489 CCTAGGGGATTGGTTCGGT 58.384 57.895 0.00 0.00 33.58 4.69
484 485 0.250989 GGGGATTGGTTCGGTCACAA 60.251 55.000 0.00 0.00 0.00 3.33
490 491 2.702592 TGGTTCGGTCACAAGAAACT 57.297 45.000 2.57 0.00 35.27 2.66
491 492 2.285083 TGGTTCGGTCACAAGAAACTG 58.715 47.619 2.57 0.00 35.27 3.16
492 493 2.093394 TGGTTCGGTCACAAGAAACTGA 60.093 45.455 2.57 0.00 35.27 3.41
496 497 2.093394 TCGGTCACAAGAAACTGAACCA 60.093 45.455 0.00 0.00 0.00 3.67
497 498 2.878406 CGGTCACAAGAAACTGAACCAT 59.122 45.455 0.00 0.00 0.00 3.55
500 501 5.043248 GGTCACAAGAAACTGAACCATTTG 58.957 41.667 0.00 0.00 0.00 2.32
501 502 5.163561 GGTCACAAGAAACTGAACCATTTGA 60.164 40.000 0.00 0.00 0.00 2.69
502 503 6.329496 GTCACAAGAAACTGAACCATTTGAA 58.671 36.000 0.00 0.00 0.00 2.69
503 504 6.253512 GTCACAAGAAACTGAACCATTTGAAC 59.746 38.462 0.00 0.00 0.00 3.18
504 505 6.152661 TCACAAGAAACTGAACCATTTGAACT 59.847 34.615 0.00 0.00 0.00 3.01
505 506 7.338196 TCACAAGAAACTGAACCATTTGAACTA 59.662 33.333 0.00 0.00 0.00 2.24
506 507 7.432252 CACAAGAAACTGAACCATTTGAACTAC 59.568 37.037 0.00 0.00 0.00 2.73
507 508 6.635030 AGAAACTGAACCATTTGAACTACC 57.365 37.500 0.00 0.00 0.00 3.18
508 509 5.535030 AGAAACTGAACCATTTGAACTACCC 59.465 40.000 0.00 0.00 0.00 3.69
509 510 4.724279 ACTGAACCATTTGAACTACCCT 57.276 40.909 0.00 0.00 0.00 4.34
510 511 4.652822 ACTGAACCATTTGAACTACCCTC 58.347 43.478 0.00 0.00 0.00 4.30
511 512 4.104102 ACTGAACCATTTGAACTACCCTCA 59.896 41.667 0.00 0.00 0.00 3.86
512 513 5.055265 TGAACCATTTGAACTACCCTCAA 57.945 39.130 0.00 0.00 0.00 3.02
566 567 9.692749 TTTCGAGAGTACATCAATGATAATACC 57.307 33.333 11.17 5.71 0.00 2.73
567 568 8.404107 TCGAGAGTACATCAATGATAATACCA 57.596 34.615 11.17 0.00 0.00 3.25
568 569 9.025041 TCGAGAGTACATCAATGATAATACCAT 57.975 33.333 11.17 3.55 0.00 3.55
586 588 4.980573 ACCATATTTTATAGAAGGCGGCA 58.019 39.130 13.08 0.00 0.00 5.69
591 593 7.255451 CCATATTTTATAGAAGGCGGCAGAAAA 60.255 37.037 13.08 6.89 0.00 2.29
640 647 4.836825 AGACTCAAATGATACACCCACAG 58.163 43.478 0.00 0.00 0.00 3.66
641 648 4.287067 AGACTCAAATGATACACCCACAGT 59.713 41.667 0.00 0.00 0.00 3.55
642 649 4.579869 ACTCAAATGATACACCCACAGTC 58.420 43.478 0.00 0.00 0.00 3.51
643 650 3.941483 CTCAAATGATACACCCACAGTCC 59.059 47.826 0.00 0.00 0.00 3.85
644 651 3.016736 CAAATGATACACCCACAGTCCC 58.983 50.000 0.00 0.00 0.00 4.46
645 652 1.965414 ATGATACACCCACAGTCCCA 58.035 50.000 0.00 0.00 0.00 4.37
646 653 0.981183 TGATACACCCACAGTCCCAC 59.019 55.000 0.00 0.00 0.00 4.61
647 654 0.981183 GATACACCCACAGTCCCACA 59.019 55.000 0.00 0.00 0.00 4.17
655 662 1.416401 CCACAGTCCCACACTAACACT 59.584 52.381 0.00 0.00 32.21 3.55
657 664 1.416401 ACAGTCCCACACTAACACTGG 59.584 52.381 0.00 0.00 39.07 4.00
672 679 4.264460 ACACTGGCAAAACAAACAAAGA 57.736 36.364 0.00 0.00 0.00 2.52
673 680 3.993736 ACACTGGCAAAACAAACAAAGAC 59.006 39.130 0.00 0.00 0.00 3.01
674 681 4.244862 CACTGGCAAAACAAACAAAGACT 58.755 39.130 0.00 0.00 0.00 3.24
676 683 5.288472 CACTGGCAAAACAAACAAAGACTAC 59.712 40.000 0.00 0.00 0.00 2.73
677 684 5.185056 ACTGGCAAAACAAACAAAGACTACT 59.815 36.000 0.00 0.00 0.00 2.57
679 686 5.417580 TGGCAAAACAAACAAAGACTACTCT 59.582 36.000 0.00 0.00 0.00 3.24
680 687 5.971792 GGCAAAACAAACAAAGACTACTCTC 59.028 40.000 0.00 0.00 0.00 3.20
681 688 6.183360 GGCAAAACAAACAAAGACTACTCTCT 60.183 38.462 0.00 0.00 0.00 3.10
682 689 6.907748 GCAAAACAAACAAAGACTACTCTCTC 59.092 38.462 0.00 0.00 0.00 3.20
683 690 7.414098 GCAAAACAAACAAAGACTACTCTCTCA 60.414 37.037 0.00 0.00 0.00 3.27
684 691 7.541122 AAACAAACAAAGACTACTCTCTCAC 57.459 36.000 0.00 0.00 0.00 3.51
685 692 6.472686 ACAAACAAAGACTACTCTCTCACT 57.527 37.500 0.00 0.00 0.00 3.41
686 693 7.584122 ACAAACAAAGACTACTCTCTCACTA 57.416 36.000 0.00 0.00 0.00 2.74
687 694 8.008513 ACAAACAAAGACTACTCTCTCACTAA 57.991 34.615 0.00 0.00 0.00 2.24
688 695 8.475639 ACAAACAAAGACTACTCTCTCACTAAA 58.524 33.333 0.00 0.00 0.00 1.85
689 696 9.482627 CAAACAAAGACTACTCTCTCACTAAAT 57.517 33.333 0.00 0.00 0.00 1.40
690 697 9.482627 AAACAAAGACTACTCTCTCACTAAATG 57.517 33.333 0.00 0.00 0.00 2.32
691 698 7.607250 ACAAAGACTACTCTCTCACTAAATGG 58.393 38.462 0.00 0.00 0.00 3.16
692 699 7.233757 ACAAAGACTACTCTCTCACTAAATGGT 59.766 37.037 0.00 0.00 0.00 3.55
693 700 7.399245 AAGACTACTCTCTCACTAAATGGTC 57.601 40.000 0.00 0.00 0.00 4.02
694 701 6.727394 AGACTACTCTCTCACTAAATGGTCT 58.273 40.000 0.00 0.00 0.00 3.85
695 702 7.863722 AGACTACTCTCTCACTAAATGGTCTA 58.136 38.462 0.00 0.00 0.00 2.59
696 703 7.990886 AGACTACTCTCTCACTAAATGGTCTAG 59.009 40.741 0.00 0.00 0.00 2.43
697 704 7.057894 ACTACTCTCTCACTAAATGGTCTAGG 58.942 42.308 0.00 0.00 0.00 3.02
698 705 4.647399 ACTCTCTCACTAAATGGTCTAGGC 59.353 45.833 0.00 0.00 0.00 3.93
699 706 3.961408 TCTCTCACTAAATGGTCTAGGCC 59.039 47.826 6.37 6.37 0.00 5.19
700 707 3.039011 TCTCACTAAATGGTCTAGGCCC 58.961 50.000 11.80 1.34 0.00 5.80
701 708 2.104963 CTCACTAAATGGTCTAGGCCCC 59.895 54.545 11.80 0.00 0.00 5.80
702 709 1.843851 CACTAAATGGTCTAGGCCCCA 59.156 52.381 11.80 0.00 34.66 4.96
703 710 2.443255 CACTAAATGGTCTAGGCCCCAT 59.557 50.000 11.80 1.36 43.29 4.00
704 711 2.443255 ACTAAATGGTCTAGGCCCCATG 59.557 50.000 11.80 3.16 40.57 3.66
705 712 0.106015 AAATGGTCTAGGCCCCATGC 60.106 55.000 11.80 0.00 40.57 4.06
706 713 1.288508 AATGGTCTAGGCCCCATGCA 61.289 55.000 11.80 0.00 40.57 3.96
707 714 1.070127 ATGGTCTAGGCCCCATGCAT 61.070 55.000 11.80 0.00 43.89 3.96
708 715 0.401250 TGGTCTAGGCCCCATGCATA 60.401 55.000 11.80 0.00 43.89 3.14
709 716 0.995024 GGTCTAGGCCCCATGCATAT 59.005 55.000 0.30 0.00 43.89 1.78
710 717 2.196595 GGTCTAGGCCCCATGCATATA 58.803 52.381 0.30 0.00 43.89 0.86
711 718 2.780010 GGTCTAGGCCCCATGCATATAT 59.220 50.000 0.30 0.00 43.89 0.86
712 719 3.434167 GGTCTAGGCCCCATGCATATATG 60.434 52.174 0.30 8.45 43.89 1.78
713 720 3.455910 GTCTAGGCCCCATGCATATATGA 59.544 47.826 17.10 2.36 43.89 2.15
714 721 4.080356 GTCTAGGCCCCATGCATATATGAA 60.080 45.833 17.10 6.35 43.89 2.57
715 722 3.377253 AGGCCCCATGCATATATGAAG 57.623 47.619 17.10 4.90 43.89 3.02
772 780 5.391629 GGGAACAGTGACCGAAATTATGTTC 60.392 44.000 0.00 6.61 42.56 3.18
813 838 1.147817 AGATGGGCCCTTTCAGTTGTT 59.852 47.619 25.70 0.00 0.00 2.83
814 839 1.273327 GATGGGCCCTTTCAGTTGTTG 59.727 52.381 25.70 0.00 0.00 3.33
815 840 0.032615 TGGGCCCTTTCAGTTGTTGT 60.033 50.000 25.70 0.00 0.00 3.32
816 841 0.389025 GGGCCCTTTCAGTTGTTGTG 59.611 55.000 17.04 0.00 0.00 3.33
817 842 1.398692 GGCCCTTTCAGTTGTTGTGA 58.601 50.000 0.00 0.00 0.00 3.58
818 843 1.338020 GGCCCTTTCAGTTGTTGTGAG 59.662 52.381 0.00 0.00 0.00 3.51
819 844 2.297701 GCCCTTTCAGTTGTTGTGAGA 58.702 47.619 0.00 0.00 0.00 3.27
820 845 2.687935 GCCCTTTCAGTTGTTGTGAGAA 59.312 45.455 0.00 0.00 0.00 2.87
821 846 3.130340 GCCCTTTCAGTTGTTGTGAGAAA 59.870 43.478 0.00 0.00 0.00 2.52
822 847 4.381505 GCCCTTTCAGTTGTTGTGAGAAAA 60.382 41.667 0.00 0.00 0.00 2.29
823 848 5.719173 CCCTTTCAGTTGTTGTGAGAAAAA 58.281 37.500 0.00 0.00 0.00 1.94
824 849 5.807011 CCCTTTCAGTTGTTGTGAGAAAAAG 59.193 40.000 0.00 0.00 0.00 2.27
831 856 8.356657 TCAGTTGTTGTGAGAAAAAGAAAAGAA 58.643 29.630 0.00 0.00 0.00 2.52
846 871 3.801114 AAAGAAAAGAAAAGCCAGCGT 57.199 38.095 0.00 0.00 0.00 5.07
853 878 0.449388 GAAAAGCCAGCGTGATCCTG 59.551 55.000 0.00 0.00 0.00 3.86
855 880 0.674895 AAAGCCAGCGTGATCCTGTC 60.675 55.000 0.00 0.00 0.00 3.51
877 902 4.408821 ATGCATGGACACGGCGGT 62.409 61.111 13.24 6.25 0.00 5.68
879 904 2.890474 GCATGGACACGGCGGTAG 60.890 66.667 13.24 2.90 0.00 3.18
892 917 1.889105 CGGTAGCGGCCGTAGTAGA 60.889 63.158 28.70 2.66 46.11 2.59
903 928 4.260702 CGGCCGTAGTAGAAGAAAGTCTAG 60.261 50.000 19.50 0.00 30.70 2.43
927 952 5.988561 GGACTCATGCATTTTACTAGAGAGG 59.011 44.000 13.21 0.00 0.00 3.69
928 953 6.183360 GGACTCATGCATTTTACTAGAGAGGA 60.183 42.308 13.21 0.00 0.00 3.71
929 954 6.815089 ACTCATGCATTTTACTAGAGAGGAG 58.185 40.000 13.21 7.41 0.00 3.69
930 955 6.382570 ACTCATGCATTTTACTAGAGAGGAGT 59.617 38.462 13.21 7.96 0.00 3.85
931 956 6.577103 TCATGCATTTTACTAGAGAGGAGTG 58.423 40.000 0.00 0.00 0.00 3.51
948 973 3.383825 GGAGTGAACCTTTCCGCTAGATA 59.616 47.826 0.00 0.00 0.00 1.98
949 974 4.500035 GGAGTGAACCTTTCCGCTAGATAG 60.500 50.000 0.00 0.00 0.00 2.08
950 975 3.124560 GTGAACCTTTCCGCTAGATAGC 58.875 50.000 1.59 1.59 45.62 2.97
951 976 2.102588 TGAACCTTTCCGCTAGATAGCC 59.897 50.000 6.28 0.00 46.34 3.93
961 986 0.038709 CTAGATAGCCAGCCGAGCAC 60.039 60.000 0.00 0.00 0.00 4.40
967 992 2.787249 CCAGCCGAGCACAAATCG 59.213 61.111 0.00 0.00 39.86 3.34
1039 1064 3.991051 GCTATAGCGGCGGCCTGA 61.991 66.667 18.34 1.86 41.24 3.86
1652 3177 2.930023 GCCTCATCATCTCCTACATGCG 60.930 54.545 0.00 0.00 0.00 4.73
1659 3187 4.830765 TCCTACATGCGTGCGCCC 62.831 66.667 14.16 0.00 41.09 6.13
1704 3286 3.823330 GGAGACGACGCCGACCAT 61.823 66.667 0.00 0.00 39.50 3.55
2008 3611 0.105778 CCGGAGCCTCATCTTCTTCC 59.894 60.000 0.00 0.00 0.00 3.46
2050 3653 2.960688 AAGAGGAGCAACCGGAGCC 61.961 63.158 9.46 6.04 44.74 4.70
2078 3684 2.448705 GCGAAGACGAGAAGGCAGC 61.449 63.158 0.00 0.00 42.66 5.25
2331 3937 3.017581 GGGGTGGTCAGGATGGCT 61.018 66.667 0.00 0.00 43.10 4.75
2478 4084 0.966920 TCTCCAACTGGTTCCTCGTC 59.033 55.000 0.00 0.00 36.34 4.20
2690 4299 3.499737 GACCATCGCCGTGCCAAG 61.500 66.667 0.00 0.00 0.00 3.61
2940 4555 2.509336 CCCTCGCGTGACATGGTC 60.509 66.667 10.21 0.00 0.00 4.02
3021 4645 2.446341 GGAAAACGAGGAGAGCACG 58.554 57.895 0.00 0.00 0.00 5.34
3159 4783 0.836400 TGGAGGAGAAGCCGAACCTT 60.836 55.000 0.00 0.00 43.43 3.50
3193 4817 2.362503 TGGAGGAGATGTCGGCGT 60.363 61.111 6.85 0.00 0.00 5.68
3614 5569 3.118542 GGTTTGCTCTGTTTCTTGCTTG 58.881 45.455 0.00 0.00 0.00 4.01
3615 5570 3.181487 GGTTTGCTCTGTTTCTTGCTTGA 60.181 43.478 0.00 0.00 0.00 3.02
3617 5572 1.599071 TGCTCTGTTTCTTGCTTGACG 59.401 47.619 0.00 0.00 0.00 4.35
3637 5592 3.195610 ACGATTCTGACTAGGACAATGCA 59.804 43.478 0.00 0.00 0.00 3.96
3638 5593 4.141846 ACGATTCTGACTAGGACAATGCAT 60.142 41.667 0.00 0.00 0.00 3.96
3711 5666 8.382405 TCTGATGAATAAATTCCCGAATCCATA 58.618 33.333 0.41 0.00 35.97 2.74
3719 5674 7.383156 AAATTCCCGAATCCATACTACCTTA 57.617 36.000 0.00 0.00 0.00 2.69
3773 5728 5.040635 CACAACCCTTCAACAATTGTGTAC 58.959 41.667 12.82 0.00 43.22 2.90
3774 5729 4.953579 ACAACCCTTCAACAATTGTGTACT 59.046 37.500 12.82 0.00 36.80 2.73
3775 5730 5.067283 ACAACCCTTCAACAATTGTGTACTC 59.933 40.000 12.82 0.00 36.80 2.59
3829 5929 4.816385 GTCCTTGAGATGCATCGGATTTTA 59.184 41.667 20.67 3.06 31.65 1.52
3864 6400 5.717119 TCAAACTTCATAACTCCTCGGTAC 58.283 41.667 0.00 0.00 0.00 3.34
3865 6401 4.732672 AACTTCATAACTCCTCGGTACC 57.267 45.455 0.16 0.16 0.00 3.34
3888 6424 6.145535 CCAAAATAAGTGTCTCAACTTCAGC 58.854 40.000 0.00 0.00 40.77 4.26
3890 6426 5.931441 AATAAGTGTCTCAACTTCAGCAC 57.069 39.130 0.00 0.00 40.77 4.40
4050 7202 3.624861 GTGTGAATGATAAGCCAGACCAG 59.375 47.826 0.00 0.00 0.00 4.00
4110 7263 7.818446 GGTAAAACAAAACCAACCTCTAAACAA 59.182 33.333 0.00 0.00 35.73 2.83
4119 7272 7.272144 ACCAACCTCTAAACAATAGGAGAAT 57.728 36.000 0.00 0.00 34.34 2.40
4455 7610 8.810427 CGACTAATTTCATTCATTTCAATTGGG 58.190 33.333 5.42 0.00 0.00 4.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.123077 TTATCCAGCTGACCATCGCT 58.877 50.000 17.39 0.00 36.83 4.93
5 6 2.175878 ATTATCCAGCTGACCATCGC 57.824 50.000 17.39 0.00 0.00 4.58
6 7 5.056480 TGTTAATTATCCAGCTGACCATCG 58.944 41.667 17.39 0.00 0.00 3.84
7 8 6.150140 GGATGTTAATTATCCAGCTGACCATC 59.850 42.308 17.39 6.79 42.93 3.51
8 9 6.006449 GGATGTTAATTATCCAGCTGACCAT 58.994 40.000 17.39 6.65 42.93 3.55
9 10 5.376625 GGATGTTAATTATCCAGCTGACCA 58.623 41.667 17.39 0.00 42.93 4.02
10 11 4.762251 GGGATGTTAATTATCCAGCTGACC 59.238 45.833 17.39 0.00 44.77 4.02
11 12 4.762251 GGGGATGTTAATTATCCAGCTGAC 59.238 45.833 17.39 2.82 44.77 3.51
12 13 4.415179 TGGGGATGTTAATTATCCAGCTGA 59.585 41.667 17.39 1.21 44.77 4.26
13 14 4.728772 TGGGGATGTTAATTATCCAGCTG 58.271 43.478 18.13 6.78 44.77 4.24
14 15 5.605540 ATGGGGATGTTAATTATCCAGCT 57.394 39.130 18.13 0.00 44.77 4.24
15 16 6.670695 AAATGGGGATGTTAATTATCCAGC 57.329 37.500 18.13 1.29 44.77 4.85
16 17 8.482852 AGAAAATGGGGATGTTAATTATCCAG 57.517 34.615 18.13 0.00 44.77 3.86
17 18 8.852671 AAGAAAATGGGGATGTTAATTATCCA 57.147 30.769 18.13 6.90 44.77 3.41
21 22 9.225436 GCAAAAAGAAAATGGGGATGTTAATTA 57.775 29.630 0.00 0.00 0.00 1.40
22 23 7.944000 AGCAAAAAGAAAATGGGGATGTTAATT 59.056 29.630 0.00 0.00 0.00 1.40
23 24 7.460910 AGCAAAAAGAAAATGGGGATGTTAAT 58.539 30.769 0.00 0.00 0.00 1.40
24 25 6.836242 AGCAAAAAGAAAATGGGGATGTTAA 58.164 32.000 0.00 0.00 0.00 2.01
25 26 6.432403 AGCAAAAAGAAAATGGGGATGTTA 57.568 33.333 0.00 0.00 0.00 2.41
26 27 5.308976 AGCAAAAAGAAAATGGGGATGTT 57.691 34.783 0.00 0.00 0.00 2.71
27 28 4.980339 AGCAAAAAGAAAATGGGGATGT 57.020 36.364 0.00 0.00 0.00 3.06
28 29 5.065235 ACAAGCAAAAAGAAAATGGGGATG 58.935 37.500 0.00 0.00 0.00 3.51
29 30 5.308014 GACAAGCAAAAAGAAAATGGGGAT 58.692 37.500 0.00 0.00 0.00 3.85
30 31 4.702831 GACAAGCAAAAAGAAAATGGGGA 58.297 39.130 0.00 0.00 0.00 4.81
31 32 3.494251 CGACAAGCAAAAAGAAAATGGGG 59.506 43.478 0.00 0.00 0.00 4.96
32 33 4.713854 CGACAAGCAAAAAGAAAATGGG 57.286 40.909 0.00 0.00 0.00 4.00
53 54 2.059541 CCGCCGCTCTATACTTTTAGC 58.940 52.381 0.00 0.00 0.00 3.09
54 55 3.566523 CTCCGCCGCTCTATACTTTTAG 58.433 50.000 0.00 0.00 0.00 1.85
55 56 2.288030 GCTCCGCCGCTCTATACTTTTA 60.288 50.000 0.00 0.00 0.00 1.52
56 57 1.538419 GCTCCGCCGCTCTATACTTTT 60.538 52.381 0.00 0.00 0.00 2.27
57 58 0.032267 GCTCCGCCGCTCTATACTTT 59.968 55.000 0.00 0.00 0.00 2.66
58 59 0.824182 AGCTCCGCCGCTCTATACTT 60.824 55.000 0.00 0.00 34.57 2.24
59 60 1.228306 AGCTCCGCCGCTCTATACT 60.228 57.895 0.00 0.00 34.57 2.12
60 61 3.356837 AGCTCCGCCGCTCTATAC 58.643 61.111 0.00 0.00 34.57 1.47
88 89 3.971453 CTCATCAGCGACGCCACGT 62.971 63.158 17.79 0.00 45.10 4.49
89 90 3.250323 CTCATCAGCGACGCCACG 61.250 66.667 17.79 5.64 0.00 4.94
90 91 2.887568 CCTCATCAGCGACGCCAC 60.888 66.667 17.79 0.00 0.00 5.01
91 92 4.147449 CCCTCATCAGCGACGCCA 62.147 66.667 17.79 3.47 0.00 5.69
93 94 4.521062 AGCCCTCATCAGCGACGC 62.521 66.667 13.03 13.03 0.00 5.19
94 95 1.021390 AAAAGCCCTCATCAGCGACG 61.021 55.000 0.00 0.00 0.00 5.12
95 96 1.168714 AAAAAGCCCTCATCAGCGAC 58.831 50.000 0.00 0.00 0.00 5.19
96 97 2.779755 TAAAAAGCCCTCATCAGCGA 57.220 45.000 0.00 0.00 0.00 4.93
97 98 3.848272 TTTAAAAAGCCCTCATCAGCG 57.152 42.857 0.00 0.00 0.00 5.18
98 99 5.482006 ACAATTTAAAAAGCCCTCATCAGC 58.518 37.500 0.00 0.00 0.00 4.26
99 100 7.153985 TGAACAATTTAAAAAGCCCTCATCAG 58.846 34.615 0.00 0.00 0.00 2.90
100 101 7.060383 TGAACAATTTAAAAAGCCCTCATCA 57.940 32.000 0.00 0.00 0.00 3.07
101 102 7.961325 TTGAACAATTTAAAAAGCCCTCATC 57.039 32.000 0.00 0.00 0.00 2.92
102 103 9.435688 GTATTGAACAATTTAAAAAGCCCTCAT 57.564 29.630 5.37 0.00 32.50 2.90
103 104 7.875554 GGTATTGAACAATTTAAAAAGCCCTCA 59.124 33.333 5.37 0.00 32.50 3.86
104 105 8.094548 AGGTATTGAACAATTTAAAAAGCCCTC 58.905 33.333 5.37 0.00 32.50 4.30
105 106 7.973402 AGGTATTGAACAATTTAAAAAGCCCT 58.027 30.769 5.37 0.00 32.50 5.19
106 107 8.094548 AGAGGTATTGAACAATTTAAAAAGCCC 58.905 33.333 5.37 0.00 32.50 5.19
115 116 9.965902 ACAGATTCTAGAGGTATTGAACAATTT 57.034 29.630 5.37 0.00 32.50 1.82
118 119 8.198109 GCTACAGATTCTAGAGGTATTGAACAA 58.802 37.037 0.00 0.00 0.00 2.83
119 120 7.561722 AGCTACAGATTCTAGAGGTATTGAACA 59.438 37.037 0.00 0.00 0.00 3.18
120 121 7.947282 AGCTACAGATTCTAGAGGTATTGAAC 58.053 38.462 0.00 0.00 0.00 3.18
121 122 9.642343 TTAGCTACAGATTCTAGAGGTATTGAA 57.358 33.333 0.00 0.00 0.00 2.69
122 123 9.815306 ATTAGCTACAGATTCTAGAGGTATTGA 57.185 33.333 0.00 0.00 0.00 2.57
155 156 9.665719 TGAGCATCTAAGTTTGTATTATGTTCA 57.334 29.630 0.00 0.00 34.92 3.18
156 157 9.922305 GTGAGCATCTAAGTTTGTATTATGTTC 57.078 33.333 0.00 0.00 34.92 3.18
157 158 9.448438 TGTGAGCATCTAAGTTTGTATTATGTT 57.552 29.630 0.00 0.00 34.92 2.71
158 159 9.618890 ATGTGAGCATCTAAGTTTGTATTATGT 57.381 29.630 0.00 0.00 34.92 2.29
168 169 9.698309 GTGTATGTATATGTGAGCATCTAAGTT 57.302 33.333 0.00 0.00 36.58 2.66
169 170 8.860088 TGTGTATGTATATGTGAGCATCTAAGT 58.140 33.333 0.00 0.00 36.58 2.24
170 171 9.866798 ATGTGTATGTATATGTGAGCATCTAAG 57.133 33.333 0.00 0.00 36.58 2.18
173 174 8.806146 TGTATGTGTATGTATATGTGAGCATCT 58.194 33.333 0.00 0.00 36.58 2.90
174 175 8.986477 TGTATGTGTATGTATATGTGAGCATC 57.014 34.615 0.00 0.00 36.58 3.91
175 176 9.948964 AATGTATGTGTATGTATATGTGAGCAT 57.051 29.630 0.00 0.00 39.03 3.79
176 177 9.777297 AAATGTATGTGTATGTATATGTGAGCA 57.223 29.630 0.00 0.00 0.00 4.26
187 188 9.639563 TTCATGGGATTAAATGTATGTGTATGT 57.360 29.630 0.00 0.00 0.00 2.29
188 189 9.897744 GTTCATGGGATTAAATGTATGTGTATG 57.102 33.333 0.00 0.00 0.00 2.39
189 190 8.783093 CGTTCATGGGATTAAATGTATGTGTAT 58.217 33.333 0.00 0.00 0.00 2.29
190 191 7.771361 ACGTTCATGGGATTAAATGTATGTGTA 59.229 33.333 0.00 0.00 0.00 2.90
191 192 6.601613 ACGTTCATGGGATTAAATGTATGTGT 59.398 34.615 0.00 0.00 0.00 3.72
192 193 6.912051 CACGTTCATGGGATTAAATGTATGTG 59.088 38.462 0.00 3.78 35.88 3.21
193 194 6.601613 ACACGTTCATGGGATTAAATGTATGT 59.398 34.615 0.00 0.00 0.00 2.29
194 195 6.912051 CACACGTTCATGGGATTAAATGTATG 59.088 38.462 0.00 0.00 0.00 2.39
195 196 6.459573 GCACACGTTCATGGGATTAAATGTAT 60.460 38.462 0.00 0.00 0.00 2.29
196 197 5.163703 GCACACGTTCATGGGATTAAATGTA 60.164 40.000 0.00 0.00 0.00 2.29
197 198 4.380444 GCACACGTTCATGGGATTAAATGT 60.380 41.667 0.00 0.00 0.00 2.71
198 199 4.104776 GCACACGTTCATGGGATTAAATG 58.895 43.478 0.00 0.00 0.00 2.32
199 200 3.761218 TGCACACGTTCATGGGATTAAAT 59.239 39.130 0.00 0.00 0.00 1.40
200 201 3.149981 TGCACACGTTCATGGGATTAAA 58.850 40.909 0.00 0.00 0.00 1.52
201 202 2.784347 TGCACACGTTCATGGGATTAA 58.216 42.857 0.00 0.00 0.00 1.40
202 203 2.481289 TGCACACGTTCATGGGATTA 57.519 45.000 0.00 0.00 0.00 1.75
203 204 1.473677 CATGCACACGTTCATGGGATT 59.526 47.619 12.09 0.00 37.13 3.01
204 205 1.097232 CATGCACACGTTCATGGGAT 58.903 50.000 12.09 0.00 37.13 3.85
205 206 1.585267 GCATGCACACGTTCATGGGA 61.585 55.000 14.21 0.00 40.16 4.37
206 207 1.153978 GCATGCACACGTTCATGGG 60.154 57.895 14.21 0.00 40.16 4.00
207 208 0.730155 GTGCATGCACACGTTCATGG 60.730 55.000 39.12 0.00 45.53 3.66
208 209 2.715758 GTGCATGCACACGTTCATG 58.284 52.632 39.12 14.47 45.53 3.07
217 218 1.103398 GGGGTAGGATGTGCATGCAC 61.103 60.000 38.00 38.00 46.33 4.57
218 219 1.227102 GGGGTAGGATGTGCATGCA 59.773 57.895 18.46 18.46 0.00 3.96
219 220 0.764890 TAGGGGTAGGATGTGCATGC 59.235 55.000 11.82 11.82 0.00 4.06
220 221 2.290514 CCATAGGGGTAGGATGTGCATG 60.291 54.545 0.00 0.00 0.00 4.06
221 222 1.988107 CCATAGGGGTAGGATGTGCAT 59.012 52.381 0.00 0.00 0.00 3.96
222 223 1.434188 CCATAGGGGTAGGATGTGCA 58.566 55.000 0.00 0.00 0.00 4.57
235 236 4.221703 CAGTATCTTAGAGGTGCCCATAGG 59.778 50.000 0.00 0.00 0.00 2.57
236 237 4.835615 ACAGTATCTTAGAGGTGCCCATAG 59.164 45.833 0.00 0.00 0.00 2.23
237 238 4.588951 CACAGTATCTTAGAGGTGCCCATA 59.411 45.833 0.00 0.00 0.00 2.74
238 239 3.389329 CACAGTATCTTAGAGGTGCCCAT 59.611 47.826 0.00 0.00 0.00 4.00
239 240 2.766263 CACAGTATCTTAGAGGTGCCCA 59.234 50.000 0.00 0.00 0.00 5.36
240 241 3.031736 TCACAGTATCTTAGAGGTGCCC 58.968 50.000 0.00 0.00 0.00 5.36
241 242 3.447586 TGTCACAGTATCTTAGAGGTGCC 59.552 47.826 0.00 0.00 0.00 5.01
242 243 4.720649 TGTCACAGTATCTTAGAGGTGC 57.279 45.455 0.00 0.00 0.00 5.01
243 244 5.864474 GTGTTGTCACAGTATCTTAGAGGTG 59.136 44.000 0.00 0.00 43.37 4.00
244 245 6.026947 GTGTTGTCACAGTATCTTAGAGGT 57.973 41.667 0.00 0.00 43.37 3.85
258 259 2.927477 TCTCAAGACGTTGTGTTGTCAC 59.073 45.455 6.70 0.00 44.08 3.67
259 260 3.239587 TCTCAAGACGTTGTGTTGTCA 57.760 42.857 6.70 0.00 37.90 3.58
260 261 4.270084 TCAATCTCAAGACGTTGTGTTGTC 59.730 41.667 6.70 0.00 37.90 3.18
261 262 4.034048 GTCAATCTCAAGACGTTGTGTTGT 59.966 41.667 6.70 0.00 37.90 3.32
262 263 4.033932 TGTCAATCTCAAGACGTTGTGTTG 59.966 41.667 0.00 0.79 38.01 3.33
263 264 4.188462 TGTCAATCTCAAGACGTTGTGTT 58.812 39.130 0.00 0.00 37.58 3.32
264 265 3.792401 TGTCAATCTCAAGACGTTGTGT 58.208 40.909 0.00 0.00 37.58 3.72
265 266 4.794248 TTGTCAATCTCAAGACGTTGTG 57.206 40.909 0.00 0.00 37.58 3.33
266 267 4.876107 ACTTTGTCAATCTCAAGACGTTGT 59.124 37.500 0.00 0.00 37.58 3.32
267 268 5.006649 TCACTTTGTCAATCTCAAGACGTTG 59.993 40.000 0.00 0.00 37.58 4.10
268 269 5.116180 TCACTTTGTCAATCTCAAGACGTT 58.884 37.500 0.00 0.00 37.58 3.99
269 270 4.693283 TCACTTTGTCAATCTCAAGACGT 58.307 39.130 0.00 0.00 37.58 4.34
270 271 4.376819 GCTCACTTTGTCAATCTCAAGACG 60.377 45.833 0.00 0.00 37.58 4.18
271 272 4.512944 TGCTCACTTTGTCAATCTCAAGAC 59.487 41.667 0.00 0.00 35.37 3.01
272 273 4.512944 GTGCTCACTTTGTCAATCTCAAGA 59.487 41.667 0.00 0.00 0.00 3.02
273 274 4.274214 TGTGCTCACTTTGTCAATCTCAAG 59.726 41.667 1.47 0.00 0.00 3.02
274 275 4.035558 GTGTGCTCACTTTGTCAATCTCAA 59.964 41.667 11.58 0.00 40.98 3.02
275 276 3.561310 GTGTGCTCACTTTGTCAATCTCA 59.439 43.478 11.58 0.00 40.98 3.27
276 277 3.058639 GGTGTGCTCACTTTGTCAATCTC 60.059 47.826 17.68 0.00 43.41 2.75
277 278 2.880890 GGTGTGCTCACTTTGTCAATCT 59.119 45.455 17.68 0.00 43.41 2.40
278 279 2.618241 TGGTGTGCTCACTTTGTCAATC 59.382 45.455 17.68 0.00 43.41 2.67
279 280 2.653726 TGGTGTGCTCACTTTGTCAAT 58.346 42.857 17.68 0.00 43.41 2.57
280 281 2.121291 TGGTGTGCTCACTTTGTCAA 57.879 45.000 17.68 0.00 43.41 3.18
281 282 2.158769 AGATGGTGTGCTCACTTTGTCA 60.159 45.455 17.68 7.88 43.41 3.58
282 283 2.498167 AGATGGTGTGCTCACTTTGTC 58.502 47.619 17.68 10.72 43.41 3.18
283 284 2.620115 CAAGATGGTGTGCTCACTTTGT 59.380 45.455 17.68 2.76 43.41 2.83
284 285 2.880268 TCAAGATGGTGTGCTCACTTTG 59.120 45.455 17.68 15.49 43.41 2.77
285 286 3.213206 TCAAGATGGTGTGCTCACTTT 57.787 42.857 17.68 6.38 43.41 2.66
286 287 2.936919 TCAAGATGGTGTGCTCACTT 57.063 45.000 17.68 6.72 43.41 3.16
287 288 2.105477 ACTTCAAGATGGTGTGCTCACT 59.895 45.455 17.68 0.00 43.41 3.41
288 289 2.498167 ACTTCAAGATGGTGTGCTCAC 58.502 47.619 10.44 10.44 43.19 3.51
289 290 2.880268 CAACTTCAAGATGGTGTGCTCA 59.120 45.455 0.00 0.00 0.00 4.26
290 291 3.058639 GTCAACTTCAAGATGGTGTGCTC 60.059 47.826 0.00 0.00 0.00 4.26
291 292 2.880890 GTCAACTTCAAGATGGTGTGCT 59.119 45.455 0.00 0.00 0.00 4.40
292 293 2.618241 TGTCAACTTCAAGATGGTGTGC 59.382 45.455 0.00 0.00 0.00 4.57
293 294 4.898829 TTGTCAACTTCAAGATGGTGTG 57.101 40.909 0.00 0.00 0.00 3.82
297 298 5.755813 CTGACTTTGTCAACTTCAAGATGG 58.244 41.667 0.00 0.00 42.26 3.51
328 329 5.105797 TGTGCTGACTTTGTGAAACTCAAAT 60.106 36.000 0.00 0.00 38.04 2.32
329 330 4.217334 TGTGCTGACTTTGTGAAACTCAAA 59.783 37.500 0.00 0.00 38.04 2.69
335 336 3.126858 GTGTCTGTGCTGACTTTGTGAAA 59.873 43.478 9.88 0.00 37.79 2.69
338 339 1.331756 GGTGTCTGTGCTGACTTTGTG 59.668 52.381 9.88 0.00 37.79 3.33
344 345 0.249489 ACGAAGGTGTCTGTGCTGAC 60.249 55.000 0.00 2.82 37.47 3.51
346 347 1.000163 ACTACGAAGGTGTCTGTGCTG 60.000 52.381 0.00 0.00 0.00 4.41
347 348 1.269998 GACTACGAAGGTGTCTGTGCT 59.730 52.381 0.00 0.00 0.00 4.40
348 349 1.699343 GACTACGAAGGTGTCTGTGC 58.301 55.000 0.00 0.00 0.00 4.57
349 350 1.534163 TCGACTACGAAGGTGTCTGTG 59.466 52.381 0.00 0.00 45.74 3.66
350 351 1.888215 TCGACTACGAAGGTGTCTGT 58.112 50.000 0.00 0.00 45.74 3.41
382 383 4.376146 TGACGATGTGTGTTCAATGAGAA 58.624 39.130 0.00 0.00 0.00 2.87
400 401 6.155827 TGAATTTATTTCAGGCCTTTTGACG 58.844 36.000 0.00 0.00 39.44 4.35
432 433 2.203153 ACTTGGCACGGTGGTCAC 60.203 61.111 10.60 0.00 0.00 3.67
442 443 2.375174 AGGGTTTGTCATAGACTTGGCA 59.625 45.455 0.00 0.00 33.15 4.92
466 467 1.165270 CTTGTGACCGAACCAATCCC 58.835 55.000 0.00 0.00 0.00 3.85
468 469 3.564225 AGTTTCTTGTGACCGAACCAATC 59.436 43.478 0.00 0.00 0.00 2.67
470 471 2.680841 CAGTTTCTTGTGACCGAACCAA 59.319 45.455 0.00 0.00 0.00 3.67
477 478 4.918810 AATGGTTCAGTTTCTTGTGACC 57.081 40.909 0.00 0.00 0.00 4.02
479 480 6.152661 AGTTCAAATGGTTCAGTTTCTTGTGA 59.847 34.615 0.00 0.00 0.00 3.58
484 485 5.535030 GGGTAGTTCAAATGGTTCAGTTTCT 59.465 40.000 0.00 0.00 0.00 2.52
490 491 4.715534 TGAGGGTAGTTCAAATGGTTCA 57.284 40.909 0.00 0.00 0.00 3.18
491 492 6.590234 AATTGAGGGTAGTTCAAATGGTTC 57.410 37.500 0.00 0.00 38.01 3.62
492 493 6.741240 GCAAATTGAGGGTAGTTCAAATGGTT 60.741 38.462 0.00 0.00 38.01 3.67
494 495 5.047092 AGCAAATTGAGGGTAGTTCAAATGG 60.047 40.000 0.00 0.00 38.01 3.16
496 497 6.012745 AGAGCAAATTGAGGGTAGTTCAAAT 58.987 36.000 0.00 0.00 38.01 2.32
497 498 5.241506 CAGAGCAAATTGAGGGTAGTTCAAA 59.758 40.000 0.00 0.00 38.01 2.69
500 501 4.327680 ACAGAGCAAATTGAGGGTAGTTC 58.672 43.478 0.00 0.00 0.00 3.01
501 502 4.373156 ACAGAGCAAATTGAGGGTAGTT 57.627 40.909 0.00 0.00 0.00 2.24
502 503 5.091261 CTACAGAGCAAATTGAGGGTAGT 57.909 43.478 0.00 0.00 0.00 2.73
542 543 8.404107 TGGTATTATCATTGATGTACTCTCGA 57.596 34.615 9.46 0.00 0.00 4.04
560 561 8.322828 TGCCGCCTTCTATAAAATATGGTATTA 58.677 33.333 0.00 0.00 0.00 0.98
562 563 6.717289 TGCCGCCTTCTATAAAATATGGTAT 58.283 36.000 0.00 0.00 0.00 2.73
563 564 6.014070 TCTGCCGCCTTCTATAAAATATGGTA 60.014 38.462 0.00 0.00 0.00 3.25
564 565 4.980573 TGCCGCCTTCTATAAAATATGGT 58.019 39.130 0.00 0.00 0.00 3.55
566 567 6.801539 TTCTGCCGCCTTCTATAAAATATG 57.198 37.500 0.00 0.00 0.00 1.78
567 568 7.817418 TTTTCTGCCGCCTTCTATAAAATAT 57.183 32.000 0.00 0.00 0.00 1.28
568 569 7.817418 ATTTTCTGCCGCCTTCTATAAAATA 57.183 32.000 0.00 0.00 0.00 1.40
569 570 6.715347 ATTTTCTGCCGCCTTCTATAAAAT 57.285 33.333 0.00 0.00 0.00 1.82
581 583 4.546570 ACTTCTTGTAAATTTTCTGCCGC 58.453 39.130 0.00 0.00 0.00 6.53
583 585 9.529325 ACTTAAACTTCTTGTAAATTTTCTGCC 57.471 29.630 0.00 0.00 0.00 4.85
591 593 8.280497 CGCACAGTACTTAAACTTCTTGTAAAT 58.720 33.333 0.00 0.00 0.00 1.40
613 615 3.307242 GGTGTATCATTTGAGTCTCGCAC 59.693 47.826 0.00 0.00 0.00 5.34
640 647 0.107831 TGCCAGTGTTAGTGTGGGAC 59.892 55.000 0.00 0.00 0.00 4.46
641 648 0.840617 TTGCCAGTGTTAGTGTGGGA 59.159 50.000 0.00 0.00 0.00 4.37
642 649 1.686355 TTTGCCAGTGTTAGTGTGGG 58.314 50.000 0.00 0.00 0.00 4.61
643 650 2.425312 TGTTTTGCCAGTGTTAGTGTGG 59.575 45.455 0.00 0.00 0.00 4.17
644 651 3.773860 TGTTTTGCCAGTGTTAGTGTG 57.226 42.857 0.00 0.00 0.00 3.82
645 652 4.021894 TGTTTGTTTTGCCAGTGTTAGTGT 60.022 37.500 0.00 0.00 0.00 3.55
646 653 4.489810 TGTTTGTTTTGCCAGTGTTAGTG 58.510 39.130 0.00 0.00 0.00 2.74
647 654 4.792521 TGTTTGTTTTGCCAGTGTTAGT 57.207 36.364 0.00 0.00 0.00 2.24
655 662 5.417580 AGAGTAGTCTTTGTTTGTTTTGCCA 59.582 36.000 0.00 0.00 0.00 4.92
657 664 6.786207 AGAGAGTAGTCTTTGTTTGTTTTGC 58.214 36.000 0.56 0.00 30.97 3.68
672 679 7.057894 CCTAGACCATTTAGTGAGAGAGTAGT 58.942 42.308 0.00 0.00 0.00 2.73
673 680 6.016610 GCCTAGACCATTTAGTGAGAGAGTAG 60.017 46.154 0.00 0.00 0.00 2.57
674 681 5.828859 GCCTAGACCATTTAGTGAGAGAGTA 59.171 44.000 0.00 0.00 0.00 2.59
676 683 4.038642 GGCCTAGACCATTTAGTGAGAGAG 59.961 50.000 0.00 0.00 0.00 3.20
677 684 3.961408 GGCCTAGACCATTTAGTGAGAGA 59.039 47.826 0.00 0.00 0.00 3.10
679 686 3.039011 GGGCCTAGACCATTTAGTGAGA 58.961 50.000 0.84 0.00 0.00 3.27
680 687 2.104963 GGGGCCTAGACCATTTAGTGAG 59.895 54.545 0.84 0.00 27.52 3.51
681 688 2.124411 GGGGCCTAGACCATTTAGTGA 58.876 52.381 0.84 0.00 27.52 3.41
682 689 1.843851 TGGGGCCTAGACCATTTAGTG 59.156 52.381 0.84 0.00 27.52 2.74
683 690 2.280308 TGGGGCCTAGACCATTTAGT 57.720 50.000 0.84 0.00 27.52 2.24
684 691 2.815589 GCATGGGGCCTAGACCATTTAG 60.816 54.545 8.42 0.32 44.85 1.85
685 692 1.144913 GCATGGGGCCTAGACCATTTA 59.855 52.381 8.42 0.00 44.85 1.40
686 693 0.106015 GCATGGGGCCTAGACCATTT 60.106 55.000 8.42 0.00 44.85 2.32
687 694 1.288508 TGCATGGGGCCTAGACCATT 61.289 55.000 8.42 0.00 44.85 3.16
689 696 0.401250 TATGCATGGGGCCTAGACCA 60.401 55.000 10.16 0.63 43.89 4.02
690 697 0.995024 ATATGCATGGGGCCTAGACC 59.005 55.000 10.16 0.00 43.89 3.85
691 698 3.455910 TCATATATGCATGGGGCCTAGAC 59.544 47.826 10.16 0.00 43.89 2.59
692 699 3.734926 TCATATATGCATGGGGCCTAGA 58.265 45.455 10.16 0.00 43.89 2.43
693 700 4.458397 CTTCATATATGCATGGGGCCTAG 58.542 47.826 10.16 0.00 43.89 3.02
694 701 3.202818 CCTTCATATATGCATGGGGCCTA 59.797 47.826 10.16 0.00 43.89 3.93
695 702 2.024655 CCTTCATATATGCATGGGGCCT 60.025 50.000 10.16 0.00 43.89 5.19
696 703 2.025037 TCCTTCATATATGCATGGGGCC 60.025 50.000 10.16 0.00 43.89 5.80
697 704 3.019564 GTCCTTCATATATGCATGGGGC 58.980 50.000 10.16 5.17 45.13 5.80
698 705 3.010472 TGGTCCTTCATATATGCATGGGG 59.990 47.826 10.16 5.61 0.00 4.96
699 706 4.305539 TGGTCCTTCATATATGCATGGG 57.694 45.455 10.16 7.17 0.00 4.00
700 707 5.072055 TGTTGGTCCTTCATATATGCATGG 58.928 41.667 10.16 9.40 0.00 3.66
701 708 5.766670 ACTGTTGGTCCTTCATATATGCATG 59.233 40.000 10.16 0.00 0.00 4.06
702 709 5.766670 CACTGTTGGTCCTTCATATATGCAT 59.233 40.000 3.79 3.79 0.00 3.96
703 710 5.125356 CACTGTTGGTCCTTCATATATGCA 58.875 41.667 7.92 0.00 0.00 3.96
704 711 4.516698 CCACTGTTGGTCCTTCATATATGC 59.483 45.833 7.92 0.00 38.23 3.14
705 712 5.065914 CCCACTGTTGGTCCTTCATATATG 58.934 45.833 6.36 6.36 42.10 1.78
706 713 4.975147 TCCCACTGTTGGTCCTTCATATAT 59.025 41.667 0.00 0.00 42.10 0.86
707 714 4.367166 TCCCACTGTTGGTCCTTCATATA 58.633 43.478 0.00 0.00 42.10 0.86
708 715 3.189606 TCCCACTGTTGGTCCTTCATAT 58.810 45.455 0.00 0.00 42.10 1.78
709 716 2.626785 TCCCACTGTTGGTCCTTCATA 58.373 47.619 0.00 0.00 42.10 2.15
710 717 1.444933 TCCCACTGTTGGTCCTTCAT 58.555 50.000 0.00 0.00 42.10 2.57
711 718 1.351017 GATCCCACTGTTGGTCCTTCA 59.649 52.381 0.00 0.00 42.10 3.02
712 719 1.676014 CGATCCCACTGTTGGTCCTTC 60.676 57.143 0.00 0.00 42.10 3.46
713 720 0.324943 CGATCCCACTGTTGGTCCTT 59.675 55.000 0.00 0.00 42.10 3.36
714 721 0.544357 TCGATCCCACTGTTGGTCCT 60.544 55.000 0.00 0.00 42.10 3.85
715 722 0.323629 TTCGATCCCACTGTTGGTCC 59.676 55.000 0.00 0.00 42.10 4.46
761 769 6.586082 AGGCAATGTGAAACGAACATAATTTC 59.414 34.615 0.00 0.00 42.39 2.17
764 772 5.048083 ACAGGCAATGTGAAACGAACATAAT 60.048 36.000 0.00 0.00 41.91 1.28
789 797 1.304381 TGAAAGGGCCCATCTGTGC 60.304 57.895 27.56 6.19 0.00 4.57
790 798 0.038744 ACTGAAAGGGCCCATCTGTG 59.961 55.000 28.07 19.39 39.30 3.66
814 839 9.746711 GCTTTTCTTTTCTTTTCTTTTTCTCAC 57.253 29.630 0.00 0.00 0.00 3.51
815 840 8.935844 GGCTTTTCTTTTCTTTTCTTTTTCTCA 58.064 29.630 0.00 0.00 0.00 3.27
816 841 8.935844 TGGCTTTTCTTTTCTTTTCTTTTTCTC 58.064 29.630 0.00 0.00 0.00 2.87
817 842 8.846943 TGGCTTTTCTTTTCTTTTCTTTTTCT 57.153 26.923 0.00 0.00 0.00 2.52
818 843 7.693951 GCTGGCTTTTCTTTTCTTTTCTTTTTC 59.306 33.333 0.00 0.00 0.00 2.29
819 844 7.530010 GCTGGCTTTTCTTTTCTTTTCTTTTT 58.470 30.769 0.00 0.00 0.00 1.94
820 845 6.183360 CGCTGGCTTTTCTTTTCTTTTCTTTT 60.183 34.615 0.00 0.00 0.00 2.27
821 846 5.291858 CGCTGGCTTTTCTTTTCTTTTCTTT 59.708 36.000 0.00 0.00 0.00 2.52
822 847 4.805719 CGCTGGCTTTTCTTTTCTTTTCTT 59.194 37.500 0.00 0.00 0.00 2.52
823 848 4.142160 ACGCTGGCTTTTCTTTTCTTTTCT 60.142 37.500 0.00 0.00 0.00 2.52
824 849 4.026558 CACGCTGGCTTTTCTTTTCTTTTC 60.027 41.667 0.00 0.00 0.00 2.29
831 856 1.541588 GGATCACGCTGGCTTTTCTTT 59.458 47.619 0.00 0.00 0.00 2.52
846 871 1.986632 ATGCATGGGCGACAGGATCA 61.987 55.000 0.00 0.00 45.35 2.92
877 902 2.042686 TTCTTCTACTACGGCCGCTA 57.957 50.000 28.58 15.82 0.00 4.26
879 904 1.135170 ACTTTCTTCTACTACGGCCGC 60.135 52.381 28.58 0.00 0.00 6.53
887 912 6.096282 GCATGAGTCCTAGACTTTCTTCTACT 59.904 42.308 0.00 0.00 43.53 2.57
888 913 6.127591 TGCATGAGTCCTAGACTTTCTTCTAC 60.128 42.308 0.00 0.00 43.53 2.59
889 914 5.952347 TGCATGAGTCCTAGACTTTCTTCTA 59.048 40.000 0.00 0.00 43.53 2.10
892 917 5.690464 ATGCATGAGTCCTAGACTTTCTT 57.310 39.130 0.00 0.00 43.53 2.52
903 928 5.988561 CCTCTCTAGTAAAATGCATGAGTCC 59.011 44.000 0.00 0.00 0.00 3.85
927 952 3.528597 ATCTAGCGGAAAGGTTCACTC 57.471 47.619 0.00 0.00 0.00 3.51
928 953 3.181474 GCTATCTAGCGGAAAGGTTCACT 60.181 47.826 0.00 0.00 39.82 3.41
929 954 3.124560 GCTATCTAGCGGAAAGGTTCAC 58.875 50.000 0.00 0.00 39.82 3.18
930 955 3.454371 GCTATCTAGCGGAAAGGTTCA 57.546 47.619 0.00 0.00 39.82 3.18
948 973 2.034687 ATTTGTGCTCGGCTGGCT 59.965 55.556 0.00 0.00 0.00 4.75
949 974 2.486966 GATTTGTGCTCGGCTGGC 59.513 61.111 0.00 0.00 0.00 4.85
950 975 1.741401 TCGATTTGTGCTCGGCTGG 60.741 57.895 0.00 0.00 36.78 4.85
951 976 1.291184 TGTCGATTTGTGCTCGGCTG 61.291 55.000 0.00 0.00 41.17 4.85
961 986 1.282248 ACGGAGTGCGTGTCGATTTG 61.282 55.000 9.56 0.00 42.51 2.32
984 1009 4.771356 ATGGTCACCGACGCGACG 62.771 66.667 23.42 23.42 32.65 5.12
985 1010 3.179265 CATGGTCACCGACGCGAC 61.179 66.667 15.93 5.54 32.65 5.19
986 1011 4.429212 CCATGGTCACCGACGCGA 62.429 66.667 15.93 0.00 32.65 5.87
1024 1049 3.991051 GCTCAGGCCGCCGCTATA 61.991 66.667 3.05 0.00 34.44 1.31
1038 1063 1.678269 CGCAGCTCGTGTTGTAGCTC 61.678 60.000 0.00 0.00 45.92 4.09
1234 1259 2.511145 GAGCGCCTTGGAGAGCAG 60.511 66.667 2.29 0.00 0.00 4.24
1670 3198 3.370231 CATGCTGCTGCTGCACCA 61.370 61.111 31.73 14.91 45.31 4.17
1672 3200 3.052620 CTCCATGCTGCTGCTGCAC 62.053 63.158 31.73 11.90 45.31 4.57
1704 3286 0.179111 CCTTCAATAGCTCGTCGCCA 60.179 55.000 0.00 0.00 40.39 5.69
1716 3298 0.248289 CGTACCGACACCCCTTCAAT 59.752 55.000 0.00 0.00 0.00 2.57
2050 3653 2.753966 CGTCTTCGCCTTGGCCATG 61.754 63.158 6.09 9.47 0.00 3.66
2078 3684 3.123620 GTTCCTCTGCTGCGGCTG 61.124 66.667 20.27 18.90 39.59 4.85
2478 4084 1.144057 GTACCCGTGGAGCATGGAG 59.856 63.158 0.00 0.00 42.73 3.86
2556 4162 2.045926 ATCTTGCTCCGCACCCAC 60.046 61.111 0.00 0.00 38.71 4.61
2690 4299 1.017387 GATGGAATGCTTCACGTCCC 58.983 55.000 0.00 0.00 0.00 4.46
2764 4379 3.264866 GAAGACCGCGACGACTGGT 62.265 63.158 8.23 2.29 39.12 4.00
2775 4390 1.006102 ACCGTTGCTGAGAAGACCG 60.006 57.895 0.00 0.00 0.00 4.79
3021 4645 1.655959 GATCTCGAAGACGCGCTCC 60.656 63.158 5.73 0.00 39.58 4.70
3111 4735 4.753662 TGCTCGTACCCGGAGCCT 62.754 66.667 15.79 0.00 36.82 4.58
3171 4795 1.358402 CGACATCTCCTCCAGCTCG 59.642 63.158 0.00 0.00 0.00 5.03
3175 4799 1.949847 AACGCCGACATCTCCTCCAG 61.950 60.000 0.00 0.00 0.00 3.86
3179 4803 2.125512 GCAACGCCGACATCTCCT 60.126 61.111 0.00 0.00 0.00 3.69
3218 4842 2.262915 CTTCCTTCTCCAGCGCGT 59.737 61.111 8.43 0.00 0.00 6.01
3591 5542 2.760092 AGCAAGAAACAGAGCAAACCAA 59.240 40.909 0.00 0.00 0.00 3.67
3614 5569 3.799420 GCATTGTCCTAGTCAGAATCGTC 59.201 47.826 0.00 0.00 0.00 4.20
3615 5570 3.195610 TGCATTGTCCTAGTCAGAATCGT 59.804 43.478 0.00 0.00 0.00 3.73
3617 5572 6.128336 GCATATGCATTGTCCTAGTCAGAATC 60.128 42.308 22.84 0.00 41.59 2.52
3637 5592 1.065053 TGCCCCTGTAACAACGCATAT 60.065 47.619 0.00 0.00 0.00 1.78
3638 5593 0.325272 TGCCCCTGTAACAACGCATA 59.675 50.000 0.00 0.00 0.00 3.14
3697 5652 6.320518 TCTAAGGTAGTATGGATTCGGGAAT 58.679 40.000 0.00 0.00 0.00 3.01
3711 5666 6.721318 TCCAGCATTCATTTTCTAAGGTAGT 58.279 36.000 0.00 0.00 0.00 2.73
3719 5674 7.235935 TCAGAATTTCCAGCATTCATTTTCT 57.764 32.000 0.00 0.00 33.67 2.52
3773 5728 3.952323 TGTGTCCCGAATCTAAGTAGGAG 59.048 47.826 0.00 0.00 0.00 3.69
3774 5729 3.972133 TGTGTCCCGAATCTAAGTAGGA 58.028 45.455 0.00 0.00 0.00 2.94
3775 5730 4.430908 GTTGTGTCCCGAATCTAAGTAGG 58.569 47.826 0.00 0.00 0.00 3.18
3842 5942 4.868734 GGTACCGAGGAGTTATGAAGTTTG 59.131 45.833 0.00 0.00 0.00 2.93
3864 6400 6.145535 GCTGAAGTTGAGACACTTATTTTGG 58.854 40.000 0.00 0.00 37.11 3.28
3865 6401 6.634436 GTGCTGAAGTTGAGACACTTATTTTG 59.366 38.462 8.74 0.00 37.11 2.44
3888 6424 4.343814 AGGGTGGTTTCACTTATTTTGGTG 59.656 41.667 0.00 0.00 43.17 4.17
3890 6426 5.069781 TCAAGGGTGGTTTCACTTATTTTGG 59.930 40.000 0.00 0.00 43.17 3.28
4119 7272 6.098409 TCCCCAAGCAATTTTGTTTACACTTA 59.902 34.615 0.00 0.00 30.22 2.24
4131 7284 5.602561 AGTAGAACTTTTCCCCAAGCAATTT 59.397 36.000 0.00 0.00 0.00 1.82
4137 7290 7.720074 AGAACTAAAGTAGAACTTTTCCCCAAG 59.280 37.037 10.07 3.90 45.38 3.61
4167 7320 6.818644 AGAATGCACTTAGTACAATCGAACAT 59.181 34.615 0.00 0.00 0.00 2.71
4169 7322 6.648725 AGAATGCACTTAGTACAATCGAAC 57.351 37.500 0.00 0.00 0.00 3.95
4172 7325 7.060748 CCGTATAGAATGCACTTAGTACAATCG 59.939 40.741 0.00 0.00 0.00 3.34
4173 7326 7.866393 ACCGTATAGAATGCACTTAGTACAATC 59.134 37.037 0.00 0.00 0.00 2.67
4177 7330 6.732154 TCACCGTATAGAATGCACTTAGTAC 58.268 40.000 0.00 0.00 0.00 2.73
4254 7409 3.182152 ACTACTAGGCACCATGACCTTT 58.818 45.455 7.14 0.00 37.50 3.11
4257 7412 4.153411 AGATACTACTAGGCACCATGACC 58.847 47.826 0.00 0.00 0.00 4.02
4304 7459 1.305201 TTGTCCCTTCAAAGTGACGC 58.695 50.000 1.79 0.00 36.39 5.19
4321 7476 5.468746 TGGTCTCGTTTGAAAGGTCTTATTG 59.531 40.000 0.00 0.00 0.00 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.