Multiple sequence alignment - TraesCS7D01G174900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G174900 chr7D 100.000 7718 0 0 1 7718 127137818 127130101 0.000000e+00 14253.0
1 TraesCS7D01G174900 chr7D 93.425 365 21 2 2199 2560 496335097 496335461 8.810000e-149 538.0
2 TraesCS7D01G174900 chr7D 92.953 298 18 2 2909 3206 496335747 496336041 1.540000e-116 431.0
3 TraesCS7D01G174900 chr7D 81.109 577 58 36 1302 1840 496315494 496316057 1.550000e-111 414.0
4 TraesCS7D01G174900 chr7D 92.958 284 14 6 2597 2877 496335466 496335746 7.210000e-110 409.0
5 TraesCS7D01G174900 chr7D 92.308 182 11 3 7108 7287 127130495 127130315 9.940000e-64 255.0
6 TraesCS7D01G174900 chr7D 92.308 182 11 3 7324 7504 127130711 127130532 9.940000e-64 255.0
7 TraesCS7D01G174900 chr7D 98.876 89 1 0 6086 6174 594802500 594802412 8.020000e-35 159.0
8 TraesCS7D01G174900 chr7D 89.474 114 8 2 2062 2175 496316266 496316375 2.900000e-29 141.0
9 TraesCS7D01G174900 chr7D 83.871 93 15 0 5208 5300 126997031 126996939 1.070000e-13 89.8
10 TraesCS7D01G174900 chr7B 96.725 4061 100 13 2054 6088 88641264 88637211 0.000000e+00 6732.0
11 TraesCS7D01G174900 chr7B 86.048 1971 156 57 2 1903 88643367 88641447 0.000000e+00 2006.0
12 TraesCS7D01G174900 chr7B 94.438 917 41 6 6197 7110 88636984 88636075 0.000000e+00 1402.0
13 TraesCS7D01G174900 chr7B 93.697 476 24 3 7124 7597 88635967 88635496 0.000000e+00 708.0
14 TraesCS7D01G174900 chr7B 91.803 183 10 3 7108 7287 88635767 88635587 4.620000e-62 250.0
15 TraesCS7D01G174900 chr7B 93.333 165 10 1 7340 7504 88635967 88635804 7.740000e-60 243.0
16 TraesCS7D01G174900 chr7B 98.148 54 0 1 6170 6222 88637213 88637160 8.250000e-15 93.5
17 TraesCS7D01G174900 chr7A 97.346 3391 64 8 2712 6088 127838417 127835039 0.000000e+00 5740.0
18 TraesCS7D01G174900 chr7A 94.629 1508 58 11 6217 7718 127834968 127833478 0.000000e+00 2314.0
19 TraesCS7D01G174900 chr7A 86.897 1969 142 54 2 1903 127841141 127839222 0.000000e+00 2100.0
20 TraesCS7D01G174900 chr7A 93.760 625 34 4 2054 2674 127839039 127838416 0.000000e+00 933.0
21 TraesCS7D01G174900 chr7A 93.370 181 11 1 7324 7504 127834084 127833905 4.590000e-67 267.0
22 TraesCS7D01G174900 chr7A 92.265 181 13 1 7108 7287 127833868 127833688 9.940000e-64 255.0
23 TraesCS7D01G174900 chr4B 82.968 1186 168 21 4738 5909 663750292 663751457 0.000000e+00 1040.0
24 TraesCS7D01G174900 chr4B 78.939 1282 178 54 2880 4105 663748255 663749500 0.000000e+00 787.0
25 TraesCS7D01G174900 chr4B 83.073 703 91 14 2082 2767 663746977 663747668 1.420000e-171 614.0
26 TraesCS7D01G174900 chr4B 82.623 610 89 13 4103 4699 663749594 663750199 2.470000e-144 523.0
27 TraesCS7D01G174900 chr4B 82.343 572 68 26 6170 6723 663751566 663752122 4.220000e-127 466.0
28 TraesCS7D01G174900 chr4B 83.333 444 55 15 1179 1615 663745305 663745736 7.260000e-105 392.0
29 TraesCS7D01G174900 chr4B 95.604 91 4 0 6086 6176 422530958 422530868 6.240000e-31 147.0
30 TraesCS7D01G174900 chrUn 92.453 424 24 7 2458 2877 20434786 20434367 3.990000e-167 599.0
31 TraesCS7D01G174900 chrUn 91.791 402 26 5 2062 2460 20484415 20484018 3.150000e-153 553.0
32 TraesCS7D01G174900 chrUn 94.631 298 16 0 2909 3206 20434366 20434069 5.460000e-126 462.0
33 TraesCS7D01G174900 chrUn 80.782 588 62 28 1294 1840 20485210 20484633 5.570000e-111 412.0
34 TraesCS7D01G174900 chr6B 97.802 91 2 0 6082 6172 220324861 220324951 2.880000e-34 158.0
35 TraesCS7D01G174900 chr6B 96.739 92 3 0 6085 6176 609097539 609097630 3.730000e-33 154.0
36 TraesCS7D01G174900 chr6B 96.629 89 3 0 6086 6174 280519706 280519794 1.740000e-31 148.0
37 TraesCS7D01G174900 chr2B 95.745 94 3 1 6086 6179 647539357 647539449 4.820000e-32 150.0
38 TraesCS7D01G174900 chr5A 93.069 101 7 0 6073 6173 48918066 48918166 1.740000e-31 148.0
39 TraesCS7D01G174900 chr3D 90.179 112 10 1 6068 6179 290015651 290015541 2.240000e-30 145.0
40 TraesCS7D01G174900 chr3D 82.456 114 20 0 6593 6706 9732682 9732569 4.930000e-17 100.0
41 TraesCS7D01G174900 chr3D 82.883 111 19 0 6243 6353 9732885 9732775 4.930000e-17 100.0
42 TraesCS7D01G174900 chr3A 92.079 101 8 0 6084 6184 646126917 646126817 8.070000e-30 143.0
43 TraesCS7D01G174900 chr3A 84.821 112 15 2 6243 6353 11392478 11392588 2.280000e-20 111.0
44 TraesCS7D01G174900 chr3A 82.883 111 19 0 6243 6353 10592440 10592550 4.930000e-17 100.0
45 TraesCS7D01G174900 chr3A 79.487 117 24 0 6590 6706 11392678 11392794 4.960000e-12 84.2
46 TraesCS7D01G174900 chr3B 86.667 105 12 2 192 295 785484426 785484323 1.760000e-21 115.0
47 TraesCS7D01G174900 chr3B 84.762 105 14 2 192 295 785433157 785433054 3.810000e-18 104.0
48 TraesCS7D01G174900 chr4D 80.508 118 12 11 162 277 384954371 384954479 6.420000e-11 80.5
49 TraesCS7D01G174900 chr6D 100.000 28 0 0 7672 7699 335334898 335334871 1.400000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G174900 chr7D 127130101 127137818 7717 True 14253.000000 14253 100.000000 1 7718 1 chr7D.!!$R2 7717
1 TraesCS7D01G174900 chr7D 496335097 496336041 944 False 459.333333 538 93.112000 2199 3206 3 chr7D.!!$F2 1007
2 TraesCS7D01G174900 chr7D 496315494 496316375 881 False 277.500000 414 85.291500 1302 2175 2 chr7D.!!$F1 873
3 TraesCS7D01G174900 chr7B 88635496 88643367 7871 True 1633.500000 6732 93.456000 2 7597 7 chr7B.!!$R1 7595
4 TraesCS7D01G174900 chr7A 127833478 127841141 7663 True 1934.833333 5740 93.044500 2 7718 6 chr7A.!!$R1 7716
5 TraesCS7D01G174900 chr4B 663745305 663752122 6817 False 637.000000 1040 82.213167 1179 6723 6 chr4B.!!$F1 5544
6 TraesCS7D01G174900 chrUn 20434069 20434786 717 True 530.500000 599 93.542000 2458 3206 2 chrUn.!!$R1 748
7 TraesCS7D01G174900 chrUn 20484018 20485210 1192 True 482.500000 553 86.286500 1294 2460 2 chrUn.!!$R2 1166

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
988 1016 0.324943 TCGGGAGAAGGGCTTCAAAG 59.675 55.000 0.00 0.00 41.84 2.77 F
1627 1724 0.391661 TGGAGGTTCGCTTGCATCTC 60.392 55.000 0.00 0.00 0.00 2.75 F
1896 2784 0.460284 GGGACTCCATGCGTGTACAG 60.460 60.000 4.96 0.38 0.00 2.74 F
1897 2785 0.530744 GGACTCCATGCGTGTACAGA 59.469 55.000 4.96 0.00 0.00 3.41 F
1898 2786 1.137086 GGACTCCATGCGTGTACAGAT 59.863 52.381 4.96 0.00 0.00 2.90 F
4576 6204 1.134788 AGAAGCCTCCGTTATTGGTCG 60.135 52.381 0.00 0.00 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1929 2817 1.275291 TGTTGCTTTCTACTCCCTCCG 59.725 52.381 0.00 0.00 0.00 4.63 R
2455 3446 4.298626 AGGCATAGAAGTCATTCCCACTA 58.701 43.478 0.00 0.00 35.94 2.74 R
3873 5395 0.370273 CGTCATTTCCGAGGAAAGCG 59.630 55.000 20.27 18.66 45.66 4.68 R
4576 6204 5.930837 TTTGATTGATTACCATGGGTTCC 57.069 39.130 18.09 3.08 37.09 3.62 R
4706 6336 9.554395 TGTCAAAGAAAGAGTACATAATCAACA 57.446 29.630 0.00 0.00 0.00 3.33 R
6739 8657 0.101399 CCCTCATCAACCGAGAGACG 59.899 60.000 0.00 0.00 42.18 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 0.966179 ACATGTCTGTGCACCGACTA 59.034 50.000 32.47 22.49 33.22 2.59
101 102 6.215845 CGGTCAAAGAAGGACATGAAAAATT 58.784 36.000 0.00 0.00 37.00 1.82
169 175 8.418662 AGATGCATTATGAACATAAATGCTTGT 58.581 29.630 24.03 18.93 37.92 3.16
245 251 6.966021 TGTTTCAAATAGTTCGCTTAGCTTT 58.034 32.000 1.76 0.00 0.00 3.51
247 253 5.450376 TCAAATAGTTCGCTTAGCTTTCG 57.550 39.130 1.76 0.00 0.00 3.46
292 299 2.291209 TGGCACAATGGTTCATCTGT 57.709 45.000 0.00 0.00 31.92 3.41
295 302 3.505680 TGGCACAATGGTTCATCTGTTAC 59.494 43.478 0.00 0.00 31.92 2.50
297 304 4.022416 GGCACAATGGTTCATCTGTTACAA 60.022 41.667 0.00 0.00 0.00 2.41
306 313 6.706270 TGGTTCATCTGTTACAAAGAAGAGAC 59.294 38.462 0.00 0.00 32.10 3.36
380 387 5.380043 AGAATATGACAATGTGGATGGACC 58.620 41.667 0.00 0.00 39.54 4.46
515 523 3.541996 AGGCAAAAACAAACAAGAGGG 57.458 42.857 0.00 0.00 0.00 4.30
558 566 4.058124 GTGCTCATGGCTATTTCACGATA 58.942 43.478 7.54 0.00 42.39 2.92
561 569 5.010617 TGCTCATGGCTATTTCACGATAGTA 59.989 40.000 7.54 0.00 45.80 1.82
562 570 5.346281 GCTCATGGCTATTTCACGATAGTAC 59.654 44.000 0.00 0.00 43.12 2.73
632 641 1.976474 GCCAAAACCGCCATCCTCA 60.976 57.895 0.00 0.00 0.00 3.86
639 648 3.297134 AACCGCCATCCTCAATATTGT 57.703 42.857 14.97 0.00 0.00 2.71
644 653 3.251729 CGCCATCCTCAATATTGTCAAGG 59.748 47.826 14.97 13.99 0.00 3.61
664 673 8.304596 GTCAAGGTAGATGTATCCGATAAATGA 58.695 37.037 0.00 0.00 0.00 2.57
716 725 0.586802 GTTGCCTCGCGTTTCTTCTT 59.413 50.000 5.77 0.00 0.00 2.52
727 736 3.605486 GCGTTTCTTCTTGATGACATTGC 59.395 43.478 0.00 0.00 0.00 3.56
749 758 5.978919 TGCTGTCAGATGAAAAATGTTGTTC 59.021 36.000 3.32 0.00 0.00 3.18
750 759 6.183360 TGCTGTCAGATGAAAAATGTTGTTCT 60.183 34.615 3.32 0.00 0.00 3.01
792 801 5.342433 ACATAATGATTTTGTGCATCCACG 58.658 37.500 0.45 0.00 45.04 4.94
804 813 5.218885 TGTGCATCCACGTTTAAAATCTTG 58.781 37.500 0.00 0.00 45.04 3.02
809 818 6.586082 GCATCCACGTTTAAAATCTTGTTGAT 59.414 34.615 0.00 0.00 36.89 2.57
812 821 9.787532 ATCCACGTTTAAAATCTTGTTGATATG 57.212 29.630 0.00 0.00 34.45 1.78
813 822 7.753132 TCCACGTTTAAAATCTTGTTGATATGC 59.247 33.333 0.00 0.00 34.45 3.14
814 823 7.540400 CCACGTTTAAAATCTTGTTGATATGCA 59.460 33.333 0.00 0.00 34.45 3.96
815 824 9.075519 CACGTTTAAAATCTTGTTGATATGCAT 57.924 29.630 3.79 3.79 34.45 3.96
816 825 9.638239 ACGTTTAAAATCTTGTTGATATGCATT 57.362 25.926 3.54 0.00 34.45 3.56
863 874 6.378582 TGTTGAAATGAAGTCGAAATAAGGC 58.621 36.000 0.00 0.00 0.00 4.35
869 880 7.865706 AATGAAGTCGAAATAAGGCTTACAT 57.134 32.000 9.55 0.90 33.19 2.29
875 887 4.697828 TCGAAATAAGGCTTACATGTGCAA 59.302 37.500 9.55 0.00 0.00 4.08
898 910 2.827921 AGGGCGAGAGAAATTGCAAAAT 59.172 40.909 1.71 0.00 0.00 1.82
935 953 6.889722 AGATTTAACTTTTGGGGATCGATTCA 59.110 34.615 5.94 0.00 0.00 2.57
940 958 7.475137 AACTTTTGGGGATCGATTCAAAATA 57.525 32.000 22.96 11.48 38.09 1.40
942 960 7.902087 ACTTTTGGGGATCGATTCAAAATAAA 58.098 30.769 22.96 9.37 38.09 1.40
945 963 5.885881 TGGGGATCGATTCAAAATAAAACG 58.114 37.500 5.94 0.00 0.00 3.60
947 965 5.449999 GGGGATCGATTCAAAATAAAACGCT 60.450 40.000 5.94 0.00 0.00 5.07
948 966 5.455525 GGGATCGATTCAAAATAAAACGCTG 59.544 40.000 5.94 0.00 0.00 5.18
949 967 5.455525 GGATCGATTCAAAATAAAACGCTGG 59.544 40.000 0.00 0.00 0.00 4.85
976 1004 2.011122 AAGAGTCTGGTTTCGGGAGA 57.989 50.000 0.00 0.00 0.00 3.71
988 1016 0.324943 TCGGGAGAAGGGCTTCAAAG 59.675 55.000 0.00 0.00 41.84 2.77
1006 1034 7.119846 GCTTCAAAGGTCAACTATACATGAACT 59.880 37.037 0.00 0.00 45.26 3.01
1011 1039 7.016153 AGGTCAACTATACATGAACTTTGGA 57.984 36.000 0.00 0.00 40.64 3.53
1013 1041 7.038302 AGGTCAACTATACATGAACTTTGGAGA 60.038 37.037 0.00 0.00 40.64 3.71
1015 1043 9.167311 GTCAACTATACATGAACTTTGGAGAAT 57.833 33.333 0.00 0.00 0.00 2.40
1016 1044 9.739276 TCAACTATACATGAACTTTGGAGAATT 57.261 29.630 0.00 0.00 0.00 2.17
1022 1050 7.595819 ACATGAACTTTGGAGAATTAAACCA 57.404 32.000 0.00 0.00 0.00 3.67
1023 1051 8.193953 ACATGAACTTTGGAGAATTAAACCAT 57.806 30.769 0.00 0.00 33.56 3.55
1025 1053 8.928733 CATGAACTTTGGAGAATTAAACCATTG 58.071 33.333 0.00 0.00 33.56 2.82
1030 1058 8.659527 ACTTTGGAGAATTAAACCATTGGAATT 58.340 29.630 10.37 5.14 33.56 2.17
1031 1059 9.506018 CTTTGGAGAATTAAACCATTGGAATTT 57.494 29.630 10.37 3.09 33.56 1.82
1032 1060 9.859152 TTTGGAGAATTAAACCATTGGAATTTT 57.141 25.926 10.37 2.34 33.56 1.82
1033 1061 8.845413 TGGAGAATTAAACCATTGGAATTTTG 57.155 30.769 10.37 0.00 0.00 2.44
1034 1062 8.435982 TGGAGAATTAAACCATTGGAATTTTGT 58.564 29.630 10.37 0.00 0.00 2.83
1035 1063 9.936759 GGAGAATTAAACCATTGGAATTTTGTA 57.063 29.630 10.37 0.00 0.00 2.41
1042 1070 6.267496 ACCATTGGAATTTTGTAGTACTGC 57.733 37.500 10.37 4.49 0.00 4.40
1043 1071 6.010219 ACCATTGGAATTTTGTAGTACTGCT 58.990 36.000 10.37 0.00 0.00 4.24
1044 1072 6.151144 ACCATTGGAATTTTGTAGTACTGCTC 59.849 38.462 10.37 0.90 0.00 4.26
1045 1073 5.856126 TTGGAATTTTGTAGTACTGCTCG 57.144 39.130 12.42 0.00 0.00 5.03
1093 1121 1.538512 CTGCCAGTCAAACAGTCCATG 59.461 52.381 0.00 0.00 0.00 3.66
1095 1123 0.518636 CCAGTCAAACAGTCCATGCG 59.481 55.000 0.00 0.00 0.00 4.73
1112 1154 1.571460 CGAAGCTGCACACTTCCAC 59.429 57.895 15.68 0.00 40.37 4.02
1113 1155 1.571460 GAAGCTGCACACTTCCACG 59.429 57.895 11.96 0.00 38.05 4.94
1114 1156 2.449556 GAAGCTGCACACTTCCACGC 62.450 60.000 11.96 0.00 38.05 5.34
1115 1157 2.947938 AAGCTGCACACTTCCACGCT 62.948 55.000 1.02 0.00 0.00 5.07
1239 1288 2.056815 GTACGGGTCCTGGGAGTCC 61.057 68.421 0.00 0.00 0.00 3.85
1608 1691 1.269448 CGCCTGTACAAGCAAACCATT 59.731 47.619 16.40 0.00 0.00 3.16
1625 1722 1.098050 ATTGGAGGTTCGCTTGCATC 58.902 50.000 0.00 0.00 0.00 3.91
1627 1724 0.391661 TGGAGGTTCGCTTGCATCTC 60.392 55.000 0.00 0.00 0.00 2.75
1631 1728 1.059994 GTTCGCTTGCATCTCGCTG 59.940 57.895 0.00 0.00 43.06 5.18
1649 1748 3.602946 CGCTGTTGATTGCTTTGCTTTTG 60.603 43.478 0.00 0.00 0.00 2.44
1668 1767 8.032952 GCTTTTGCAGTGCTATGATATATACA 57.967 34.615 17.60 0.00 46.58 2.29
1669 1768 8.671921 GCTTTTGCAGTGCTATGATATATACAT 58.328 33.333 17.60 0.00 46.58 2.29
1684 1793 8.874156 TGATATATACATCTTCATGGATAGGGC 58.126 37.037 0.00 0.00 38.93 5.19
1692 1801 1.202964 TCATGGATAGGGCCATTGCTG 60.203 52.381 6.18 0.00 46.29 4.41
1693 1802 1.151760 ATGGATAGGGCCATTGCTGA 58.848 50.000 6.18 0.00 46.29 4.26
1696 1805 1.891150 GGATAGGGCCATTGCTGATTG 59.109 52.381 6.18 0.00 37.74 2.67
1697 1806 1.271656 GATAGGGCCATTGCTGATTGC 59.728 52.381 6.18 0.00 43.25 3.56
1699 1808 0.616679 AGGGCCATTGCTGATTGCTT 60.617 50.000 6.18 0.00 43.37 3.91
1701 1810 0.822164 GGCCATTGCTGATTGCTTCT 59.178 50.000 0.00 0.00 43.37 2.85
1702 1811 1.470979 GGCCATTGCTGATTGCTTCTG 60.471 52.381 0.00 0.00 43.37 3.02
1792 2679 5.064452 CAGACAAGTGTTCCTTCATATCAGC 59.936 44.000 0.00 0.00 0.00 4.26
1843 2730 4.355543 ACATGCGTGTTATGTTGGAATC 57.644 40.909 5.51 0.00 35.32 2.52
1855 2742 8.747471 TGTTATGTTGGAATCTTTATGCATGAA 58.253 29.630 10.16 6.59 0.00 2.57
1856 2743 9.585099 GTTATGTTGGAATCTTTATGCATGAAA 57.415 29.630 10.16 5.42 0.00 2.69
1887 2775 2.304092 CATCATGTTGGGGACTCCATG 58.696 52.381 0.00 0.00 46.52 3.66
1889 2777 1.077501 ATGTTGGGGACTCCATGCG 60.078 57.895 0.00 0.00 46.52 4.73
1892 2780 2.525124 TTGGGGACTCCATGCGTGT 61.525 57.895 4.96 0.00 46.52 4.49
1893 2781 1.195442 TTGGGGACTCCATGCGTGTA 61.195 55.000 4.96 0.00 46.52 2.90
1894 2782 1.153429 GGGGACTCCATGCGTGTAC 60.153 63.158 4.96 0.00 35.00 2.90
1895 2783 1.594833 GGGACTCCATGCGTGTACA 59.405 57.895 4.96 0.00 0.00 2.90
1896 2784 0.460284 GGGACTCCATGCGTGTACAG 60.460 60.000 4.96 0.38 0.00 2.74
1897 2785 0.530744 GGACTCCATGCGTGTACAGA 59.469 55.000 4.96 0.00 0.00 3.41
1898 2786 1.137086 GGACTCCATGCGTGTACAGAT 59.863 52.381 4.96 0.00 0.00 2.90
1899 2787 2.361119 GGACTCCATGCGTGTACAGATA 59.639 50.000 4.96 0.00 0.00 1.98
1900 2788 3.005897 GGACTCCATGCGTGTACAGATAT 59.994 47.826 4.96 0.00 0.00 1.63
1901 2789 4.217767 GGACTCCATGCGTGTACAGATATA 59.782 45.833 4.96 0.00 0.00 0.86
1902 2790 5.122512 ACTCCATGCGTGTACAGATATAC 57.877 43.478 4.96 0.00 0.00 1.47
1903 2791 4.827835 ACTCCATGCGTGTACAGATATACT 59.172 41.667 4.96 0.00 0.00 2.12
1904 2792 5.048643 ACTCCATGCGTGTACAGATATACTC 60.049 44.000 4.96 0.00 0.00 2.59
1905 2793 4.217767 TCCATGCGTGTACAGATATACTCC 59.782 45.833 4.96 0.00 0.00 3.85
1906 2794 4.486090 CATGCGTGTACAGATATACTCCC 58.514 47.826 0.00 0.00 0.00 4.30
1907 2795 3.828921 TGCGTGTACAGATATACTCCCT 58.171 45.455 0.00 0.00 0.00 4.20
1908 2796 3.819337 TGCGTGTACAGATATACTCCCTC 59.181 47.826 0.00 0.00 0.00 4.30
1909 2797 4.073549 GCGTGTACAGATATACTCCCTCT 58.926 47.826 0.00 0.00 0.00 3.69
1910 2798 4.083217 GCGTGTACAGATATACTCCCTCTG 60.083 50.000 0.00 0.00 41.69 3.35
1911 2799 5.306394 CGTGTACAGATATACTCCCTCTGA 58.694 45.833 0.00 0.00 38.96 3.27
1912 2800 5.941058 CGTGTACAGATATACTCCCTCTGAT 59.059 44.000 0.00 0.00 38.96 2.90
1913 2801 6.092944 CGTGTACAGATATACTCCCTCTGATC 59.907 46.154 0.00 0.00 38.96 2.92
1914 2802 6.376018 GTGTACAGATATACTCCCTCTGATCC 59.624 46.154 0.00 0.00 38.96 3.36
1915 2803 5.607168 ACAGATATACTCCCTCTGATCCA 57.393 43.478 7.19 0.00 38.96 3.41
1916 2804 5.970289 ACAGATATACTCCCTCTGATCCAA 58.030 41.667 7.19 0.00 38.96 3.53
1917 2805 6.385443 ACAGATATACTCCCTCTGATCCAAA 58.615 40.000 7.19 0.00 38.96 3.28
1918 2806 7.021873 ACAGATATACTCCCTCTGATCCAAAT 58.978 38.462 7.19 0.00 38.96 2.32
1919 2807 7.515514 ACAGATATACTCCCTCTGATCCAAATT 59.484 37.037 7.19 0.00 38.96 1.82
1920 2808 9.040259 CAGATATACTCCCTCTGATCCAAATTA 57.960 37.037 0.00 0.00 38.96 1.40
1921 2809 9.621239 AGATATACTCCCTCTGATCCAAATTAA 57.379 33.333 0.00 0.00 0.00 1.40
1925 2813 7.651027 ACTCCCTCTGATCCAAATTAATTTG 57.349 36.000 27.09 27.09 45.04 2.32
1939 2827 6.509523 AATTAATTTGGATCGGAGGGAGTA 57.490 37.500 0.00 0.00 0.00 2.59
1940 2828 5.546621 TTAATTTGGATCGGAGGGAGTAG 57.453 43.478 0.00 0.00 0.00 2.57
1951 2840 3.536570 GGAGGGAGTAGAAAGCAACATC 58.463 50.000 0.00 0.00 0.00 3.06
1952 2841 3.055094 GGAGGGAGTAGAAAGCAACATCA 60.055 47.826 0.00 0.00 0.00 3.07
1971 2860 5.765182 ACATCACCAGAAACCTGAACTAAAG 59.235 40.000 0.00 0.00 33.56 1.85
2052 2943 7.571983 CGGTTCTGCATCTTTTTAGCCTATATG 60.572 40.741 0.00 0.00 0.00 1.78
2056 2947 6.364701 TGCATCTTTTTAGCCTATATGGTGT 58.635 36.000 0.00 0.00 38.35 4.16
2059 2950 7.862873 GCATCTTTTTAGCCTATATGGTGTTTC 59.137 37.037 0.00 0.00 38.35 2.78
2060 2951 7.548196 TCTTTTTAGCCTATATGGTGTTTCG 57.452 36.000 0.00 0.00 38.35 3.46
2178 3157 3.402110 TCCTCACTTCAGTCGTTACGTA 58.598 45.455 4.24 0.00 0.00 3.57
2234 3213 4.275810 AGCATGTCAATGGTGCTTTCTAT 58.724 39.130 0.00 0.00 46.29 1.98
2305 3284 3.126831 GAGTAGCTCAAATCCCATCACG 58.873 50.000 0.00 0.00 0.00 4.35
2394 3374 6.114767 CCTGTTGCATTAATTTGGGCTTAAT 58.885 36.000 0.00 0.00 30.73 1.40
2455 3446 3.256631 CCTTAGAACCAATTGTGCTGCTT 59.743 43.478 4.43 0.00 33.62 3.91
3873 5395 3.532542 GGTTTATGGTGTCAGCTCCTAC 58.467 50.000 3.30 0.00 0.00 3.18
4576 6204 1.134788 AGAAGCCTCCGTTATTGGTCG 60.135 52.381 0.00 0.00 0.00 4.79
5073 6764 8.178313 TCGGCTATCTATCTGATGAGTAAAAA 57.822 34.615 0.00 0.00 36.65 1.94
5163 6854 7.916914 TGTACAAAAGCCTTAATCTCTTACC 57.083 36.000 0.00 0.00 0.00 2.85
5433 7127 0.398318 AGGTGGCAACTGGAAGAGTC 59.602 55.000 3.07 0.00 37.43 3.36
5520 7214 2.450609 TTAGACAGACGTTCAAGGCC 57.549 50.000 0.00 0.00 0.00 5.19
5557 7259 3.739519 CGGGGCAAGTTTCAAATCACAAA 60.740 43.478 0.00 0.00 0.00 2.83
5730 7432 9.650539 CTCATCTTTACTAGGATATGGATGTTG 57.349 37.037 0.00 0.00 33.39 3.33
5774 7477 6.584185 AAATAACACCCATGTACCTTCAAC 57.416 37.500 0.00 0.00 38.45 3.18
5843 7546 5.400066 TCGTTGAGAGATTTACATGTCCA 57.600 39.130 0.00 0.00 0.00 4.02
6086 7795 2.430694 ACTGCAGTGTGTCAGTTGTCTA 59.569 45.455 20.97 0.00 40.32 2.59
6087 7796 2.797156 CTGCAGTGTGTCAGTTGTCTAC 59.203 50.000 5.25 0.00 0.00 2.59
6088 7797 2.430694 TGCAGTGTGTCAGTTGTCTACT 59.569 45.455 0.00 0.00 37.68 2.57
6089 7798 3.053455 GCAGTGTGTCAGTTGTCTACTC 58.947 50.000 0.00 0.00 33.85 2.59
6090 7799 3.643763 CAGTGTGTCAGTTGTCTACTCC 58.356 50.000 0.00 0.00 33.85 3.85
6091 7800 2.628657 AGTGTGTCAGTTGTCTACTCCC 59.371 50.000 0.00 0.00 33.85 4.30
6092 7801 2.628657 GTGTGTCAGTTGTCTACTCCCT 59.371 50.000 0.00 0.00 33.85 4.20
6093 7802 2.891580 TGTGTCAGTTGTCTACTCCCTC 59.108 50.000 0.00 0.00 33.85 4.30
6094 7803 2.231721 GTGTCAGTTGTCTACTCCCTCC 59.768 54.545 0.00 0.00 33.85 4.30
6095 7804 1.473278 GTCAGTTGTCTACTCCCTCCG 59.527 57.143 0.00 0.00 33.85 4.63
6096 7805 1.075050 TCAGTTGTCTACTCCCTCCGT 59.925 52.381 0.00 0.00 33.85 4.69
6097 7806 1.893801 CAGTTGTCTACTCCCTCCGTT 59.106 52.381 0.00 0.00 33.85 4.44
6098 7807 2.094649 CAGTTGTCTACTCCCTCCGTTC 60.095 54.545 0.00 0.00 33.85 3.95
6099 7808 1.135460 GTTGTCTACTCCCTCCGTTCG 60.135 57.143 0.00 0.00 0.00 3.95
6100 7809 0.325933 TGTCTACTCCCTCCGTTCGA 59.674 55.000 0.00 0.00 0.00 3.71
6101 7810 1.271543 TGTCTACTCCCTCCGTTCGAA 60.272 52.381 0.00 0.00 0.00 3.71
6102 7811 1.815003 GTCTACTCCCTCCGTTCGAAA 59.185 52.381 0.00 0.00 0.00 3.46
6103 7812 2.229784 GTCTACTCCCTCCGTTCGAAAA 59.770 50.000 0.00 0.00 0.00 2.29
6104 7813 3.094572 TCTACTCCCTCCGTTCGAAAAT 58.905 45.455 0.00 0.00 0.00 1.82
6105 7814 4.096984 GTCTACTCCCTCCGTTCGAAAATA 59.903 45.833 0.00 0.00 0.00 1.40
6106 7815 3.521947 ACTCCCTCCGTTCGAAAATAG 57.478 47.619 0.00 0.00 0.00 1.73
6107 7816 3.094572 ACTCCCTCCGTTCGAAAATAGA 58.905 45.455 0.00 0.00 0.00 1.98
6108 7817 3.705072 ACTCCCTCCGTTCGAAAATAGAT 59.295 43.478 0.00 0.00 0.00 1.98
6109 7818 4.051922 CTCCCTCCGTTCGAAAATAGATG 58.948 47.826 0.00 0.00 0.00 2.90
6110 7819 3.702548 TCCCTCCGTTCGAAAATAGATGA 59.297 43.478 0.00 0.00 0.00 2.92
6111 7820 3.802685 CCCTCCGTTCGAAAATAGATGAC 59.197 47.826 0.00 0.00 0.00 3.06
6112 7821 4.441634 CCCTCCGTTCGAAAATAGATGACT 60.442 45.833 0.00 0.00 0.00 3.41
6113 7822 4.740695 CCTCCGTTCGAAAATAGATGACTC 59.259 45.833 0.00 0.00 0.00 3.36
6114 7823 5.319140 TCCGTTCGAAAATAGATGACTCA 57.681 39.130 0.00 0.00 0.00 3.41
6115 7824 5.716094 TCCGTTCGAAAATAGATGACTCAA 58.284 37.500 0.00 0.00 0.00 3.02
6116 7825 5.575606 TCCGTTCGAAAATAGATGACTCAAC 59.424 40.000 0.00 0.00 0.00 3.18
6117 7826 5.577164 CCGTTCGAAAATAGATGACTCAACT 59.423 40.000 0.00 0.00 0.00 3.16
6118 7827 6.090898 CCGTTCGAAAATAGATGACTCAACTT 59.909 38.462 0.00 0.00 0.00 2.66
6119 7828 7.360101 CCGTTCGAAAATAGATGACTCAACTTT 60.360 37.037 0.00 0.00 0.00 2.66
6120 7829 7.475565 CGTTCGAAAATAGATGACTCAACTTTG 59.524 37.037 0.00 0.00 0.00 2.77
6121 7830 7.962964 TCGAAAATAGATGACTCAACTTTGT 57.037 32.000 0.00 0.00 0.00 2.83
6122 7831 9.483916 TTCGAAAATAGATGACTCAACTTTGTA 57.516 29.630 0.00 0.00 0.00 2.41
6123 7832 8.922676 TCGAAAATAGATGACTCAACTTTGTAC 58.077 33.333 0.00 0.00 0.00 2.90
6124 7833 8.926710 CGAAAATAGATGACTCAACTTTGTACT 58.073 33.333 0.00 0.00 0.00 2.73
6131 7840 9.614792 AGATGACTCAACTTTGTACTAAAGTTT 57.385 29.630 22.53 14.46 45.20 2.66
6132 7841 9.651718 GATGACTCAACTTTGTACTAAAGTTTG 57.348 33.333 22.53 20.26 45.20 2.93
6133 7842 8.556213 TGACTCAACTTTGTACTAAAGTTTGT 57.444 30.769 22.53 22.04 45.20 2.83
6134 7843 9.656040 TGACTCAACTTTGTACTAAAGTTTGTA 57.344 29.630 22.53 14.87 45.20 2.41
6135 7844 9.911980 GACTCAACTTTGTACTAAAGTTTGTAC 57.088 33.333 22.53 15.58 45.20 2.90
6136 7845 9.439500 ACTCAACTTTGTACTAAAGTTTGTACA 57.561 29.630 22.53 18.77 45.20 2.90
6146 7855 9.911980 GTACTAAAGTTTGTACAAAGTTGAGTC 57.088 33.333 39.06 30.40 45.59 3.36
6147 7856 8.556213 ACTAAAGTTTGTACAAAGTTGAGTCA 57.444 30.769 34.46 20.51 45.59 3.41
6148 7857 9.174166 ACTAAAGTTTGTACAAAGTTGAGTCAT 57.826 29.630 34.46 23.50 45.59 3.06
6149 7858 9.651718 CTAAAGTTTGTACAAAGTTGAGTCATC 57.348 33.333 31.97 13.95 41.57 2.92
6150 7859 7.865706 AAGTTTGTACAAAGTTGAGTCATCT 57.134 32.000 31.18 15.12 41.07 2.90
6151 7860 8.958119 AAGTTTGTACAAAGTTGAGTCATCTA 57.042 30.769 31.18 2.13 41.07 1.98
6152 7861 9.561069 AAGTTTGTACAAAGTTGAGTCATCTAT 57.439 29.630 31.18 10.59 41.07 1.98
6153 7862 9.561069 AGTTTGTACAAAGTTGAGTCATCTATT 57.439 29.630 21.12 0.00 30.25 1.73
6157 7866 8.783093 TGTACAAAGTTGAGTCATCTATTTTGG 58.217 33.333 14.35 0.00 40.00 3.28
6158 7867 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
6159 7868 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
6160 7869 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
6161 7870 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
6162 7871 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
6163 7872 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
6164 7873 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
6165 7874 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
6166 7875 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
6167 7876 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
6168 7877 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
6169 7878 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
6340 8248 1.560505 ATGAAGGGGAACAACATGGC 58.439 50.000 0.00 0.00 0.00 4.40
6427 8342 1.855295 TACACAAGGCACCTCCGATA 58.145 50.000 0.00 0.00 40.77 2.92
6428 8343 0.249398 ACACAAGGCACCTCCGATAC 59.751 55.000 0.00 0.00 40.77 2.24
6431 8346 0.249120 CAAGGCACCTCCGATACACA 59.751 55.000 0.00 0.00 40.77 3.72
6723 8641 5.545658 TTGATAAAGCCTCGTGATTGTTC 57.454 39.130 0.00 0.00 0.00 3.18
6729 8647 1.200020 GCCTCGTGATTGTTCCAAAGG 59.800 52.381 0.00 0.00 0.00 3.11
6734 8652 3.314080 TCGTGATTGTTCCAAAGGACAAC 59.686 43.478 0.00 0.00 30.29 3.32
6739 8657 0.591659 GTTCCAAAGGACAACCGAGC 59.408 55.000 0.00 0.00 41.83 5.03
6743 8661 0.600255 CAAAGGACAACCGAGCGTCT 60.600 55.000 0.00 0.00 41.83 4.18
6881 8799 0.026674 CTGCGACATGTATGCCGTTG 59.973 55.000 17.23 3.33 36.03 4.10
6906 8824 5.246307 AGCATCAACTAGTGTACCTTTTCC 58.754 41.667 0.00 0.00 0.00 3.13
7089 9007 2.820728 TCCCTATGAAGTCGAGACCA 57.179 50.000 0.00 0.00 0.00 4.02
7117 9046 7.872163 TGAAATCAATCGAGGATTTGTTTTG 57.128 32.000 24.31 7.68 43.12 2.44
7182 9194 5.355910 ACTGTGAGTGGACGTTTGTATTTTT 59.644 36.000 0.00 0.00 0.00 1.94
7199 9211 9.743057 TTGTATTTTTAAATTGCAGCGCTATAT 57.257 25.926 10.99 0.09 0.00 0.86
7227 9239 5.663556 TGTAGGACCATAATGTCACACCATA 59.336 40.000 0.00 0.00 36.97 2.74
7242 9254 4.885907 CACACCATATTGAATGCTTCTCCT 59.114 41.667 0.00 0.00 0.00 3.69
7308 9320 6.710692 ATTGAAATCGCTTTGAAATCAACC 57.289 33.333 0.00 0.00 37.77 3.77
7378 9390 5.497474 ACTGTTTTGAAGTTGTAGGACTGT 58.503 37.500 0.00 0.00 0.00 3.55
7413 9425 4.915085 TGTTTTCTAAAATTGCAGCGCTAC 59.085 37.500 10.99 4.60 0.00 3.58
7414 9426 5.154222 GTTTTCTAAAATTGCAGCGCTACT 58.846 37.500 10.99 0.00 0.00 2.57
7439 9451 5.957771 AGTGTAGGACCATAATGTCACAT 57.042 39.130 0.00 0.00 36.97 3.21
7487 9499 9.622004 CATTCTGAAATATAAGGTGCATTGATC 57.378 33.333 0.00 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.542907 CCGTCTTTGGTTGCGCACT 61.543 57.895 11.12 0.00 0.00 4.40
61 62 1.377725 CCGGACAGAGCAAGCCAAT 60.378 57.895 0.00 0.00 0.00 3.16
101 102 8.642935 TTTACCCACAAAAGACAATGATGATA 57.357 30.769 0.00 0.00 0.00 2.15
107 108 9.787532 CTGTATATTTACCCACAAAAGACAATG 57.212 33.333 0.00 0.00 0.00 2.82
108 109 8.966868 CCTGTATATTTACCCACAAAAGACAAT 58.033 33.333 0.00 0.00 0.00 2.71
169 175 7.719193 TGAAAGATGTTTCTTGTGAATGGTCTA 59.281 33.333 15.57 0.00 41.42 2.59
245 251 4.254709 AGGCCAACTGCAGCACGA 62.255 61.111 15.27 0.00 43.89 4.35
247 253 2.282040 AGAGGCCAACTGCAGCAC 60.282 61.111 15.27 0.00 43.89 4.40
281 288 6.706270 GTCTCTTCTTTGTAACAGATGAACCA 59.294 38.462 0.00 0.00 0.00 3.67
291 298 7.379797 GCATTTCTTTGGTCTCTTCTTTGTAAC 59.620 37.037 0.00 0.00 0.00 2.50
292 299 7.285401 AGCATTTCTTTGGTCTCTTCTTTGTAA 59.715 33.333 0.00 0.00 0.00 2.41
295 302 6.081872 AGCATTTCTTTGGTCTCTTCTTTG 57.918 37.500 0.00 0.00 0.00 2.77
297 304 6.773638 TCTAGCATTTCTTTGGTCTCTTCTT 58.226 36.000 0.00 0.00 0.00 2.52
306 313 5.171476 TCTTCGTCTCTAGCATTTCTTTGG 58.829 41.667 0.00 0.00 0.00 3.28
380 387 2.158593 TCTCCTCCTCCCGTCTTATGAG 60.159 54.545 0.00 0.00 0.00 2.90
385 392 1.308326 CCTCTCCTCCTCCCGTCTT 59.692 63.158 0.00 0.00 0.00 3.01
386 393 1.511316 AACCTCTCCTCCTCCCGTCT 61.511 60.000 0.00 0.00 0.00 4.18
427 434 2.028930 ACAGGCCACTAACTTCTTCTCG 60.029 50.000 5.01 0.00 0.00 4.04
432 439 2.609747 TCTCACAGGCCACTAACTTCT 58.390 47.619 5.01 0.00 0.00 2.85
502 509 1.494721 TGCTCCTCCCTCTTGTTTGTT 59.505 47.619 0.00 0.00 0.00 2.83
515 523 0.321475 AGTGCTTGCTCTTGCTCCTC 60.321 55.000 0.00 0.00 40.48 3.71
546 554 5.342525 GCCATGTCGTACTATCGTGAAATAG 59.657 44.000 0.00 0.00 35.70 1.73
548 556 4.049186 GCCATGTCGTACTATCGTGAAAT 58.951 43.478 0.00 0.00 0.00 2.17
558 566 4.640789 TTTTGTTTTGCCATGTCGTACT 57.359 36.364 0.00 0.00 0.00 2.73
583 592 2.622011 CCGCGCCAAGGTTGCTTTA 61.622 57.895 0.00 0.00 0.00 1.85
584 593 3.977244 CCGCGCCAAGGTTGCTTT 61.977 61.111 0.00 0.00 0.00 3.51
588 597 3.508840 GATCCCGCGCCAAGGTTG 61.509 66.667 0.00 0.00 0.00 3.77
589 598 3.268103 AAGATCCCGCGCCAAGGTT 62.268 57.895 0.00 0.00 0.00 3.50
591 600 3.204827 CAAGATCCCGCGCCAAGG 61.205 66.667 0.00 0.00 0.00 3.61
593 602 4.794648 CCCAAGATCCCGCGCCAA 62.795 66.667 0.00 0.00 0.00 4.52
632 641 8.190326 TCGGATACATCTACCTTGACAATATT 57.810 34.615 0.00 0.00 0.00 1.28
639 648 8.417273 TCATTTATCGGATACATCTACCTTGA 57.583 34.615 0.00 0.00 0.00 3.02
716 725 4.210724 TCATCTGACAGCAATGTCATCA 57.789 40.909 11.19 2.72 46.24 3.07
727 736 8.638685 AAAGAACAACATTTTTCATCTGACAG 57.361 30.769 0.00 0.00 0.00 3.51
739 748 9.442047 TGAATTGTACCAAAAAGAACAACATTT 57.558 25.926 0.00 0.00 34.89 2.32
767 776 6.310956 CGTGGATGCACAAAATCATTATGTTT 59.689 34.615 18.05 0.00 0.00 2.83
812 821 0.721154 TCGACTGATGCGTTGAATGC 59.279 50.000 1.68 1.68 0.00 3.56
813 822 3.663464 ATTCGACTGATGCGTTGAATG 57.337 42.857 5.80 0.00 43.17 2.67
814 823 5.794687 TTAATTCGACTGATGCGTTGAAT 57.205 34.783 0.00 0.00 45.46 2.57
815 824 5.794687 ATTAATTCGACTGATGCGTTGAA 57.205 34.783 0.00 0.00 40.52 2.69
816 825 5.794687 AATTAATTCGACTGATGCGTTGA 57.205 34.783 0.00 0.00 0.00 3.18
817 826 5.794945 ACAAATTAATTCGACTGATGCGTTG 59.205 36.000 0.10 0.00 0.00 4.10
818 827 5.938322 ACAAATTAATTCGACTGATGCGTT 58.062 33.333 0.10 0.00 0.00 4.84
863 874 2.545526 CTCGCCCTATTGCACATGTAAG 59.454 50.000 0.00 0.00 0.00 2.34
869 880 0.901827 TTCTCTCGCCCTATTGCACA 59.098 50.000 0.00 0.00 0.00 4.57
875 887 3.281727 TTGCAATTTCTCTCGCCCTAT 57.718 42.857 0.00 0.00 0.00 2.57
909 921 6.944234 ATCGATCCCCAAAAGTTAAATCTC 57.056 37.500 0.00 0.00 0.00 2.75
976 1004 2.755952 AGTTGACCTTTGAAGCCCTT 57.244 45.000 0.00 0.00 0.00 3.95
988 1016 7.103641 TCTCCAAAGTTCATGTATAGTTGACC 58.896 38.462 0.00 0.00 0.00 4.02
1006 1034 9.859152 AAAATTCCAATGGTTTAATTCTCCAAA 57.141 25.926 0.00 0.00 34.80 3.28
1007 1035 9.282569 CAAAATTCCAATGGTTTAATTCTCCAA 57.717 29.630 0.00 0.00 34.80 3.53
1008 1036 8.435982 ACAAAATTCCAATGGTTTAATTCTCCA 58.564 29.630 0.00 0.00 35.64 3.86
1016 1044 8.301002 GCAGTACTACAAAATTCCAATGGTTTA 58.699 33.333 0.00 0.00 0.00 2.01
1017 1045 7.015195 AGCAGTACTACAAAATTCCAATGGTTT 59.985 33.333 0.00 0.00 0.00 3.27
1018 1046 6.493458 AGCAGTACTACAAAATTCCAATGGTT 59.507 34.615 0.00 0.00 0.00 3.67
1020 1048 6.515272 AGCAGTACTACAAAATTCCAATGG 57.485 37.500 0.00 0.00 0.00 3.16
1021 1049 6.250819 CGAGCAGTACTACAAAATTCCAATG 58.749 40.000 0.00 0.00 0.00 2.82
1022 1050 5.163754 GCGAGCAGTACTACAAAATTCCAAT 60.164 40.000 0.00 0.00 0.00 3.16
1023 1051 4.153475 GCGAGCAGTACTACAAAATTCCAA 59.847 41.667 0.00 0.00 0.00 3.53
1025 1053 3.241995 CGCGAGCAGTACTACAAAATTCC 60.242 47.826 0.00 0.00 0.00 3.01
1030 1058 2.427232 AACGCGAGCAGTACTACAAA 57.573 45.000 15.93 0.00 0.00 2.83
1031 1059 2.427232 AAACGCGAGCAGTACTACAA 57.573 45.000 15.93 0.00 0.00 2.41
1032 1060 2.322161 GAAAACGCGAGCAGTACTACA 58.678 47.619 15.93 0.00 0.00 2.74
1033 1061 1.652619 GGAAAACGCGAGCAGTACTAC 59.347 52.381 15.93 0.00 0.00 2.73
1034 1062 1.542915 AGGAAAACGCGAGCAGTACTA 59.457 47.619 15.93 0.00 0.00 1.82
1035 1063 0.317479 AGGAAAACGCGAGCAGTACT 59.683 50.000 15.93 0.00 0.00 2.73
1037 1065 2.164827 TCATAGGAAAACGCGAGCAGTA 59.835 45.455 15.93 0.00 0.00 2.74
1038 1066 1.067142 TCATAGGAAAACGCGAGCAGT 60.067 47.619 15.93 0.00 0.00 4.40
1039 1067 1.640428 TCATAGGAAAACGCGAGCAG 58.360 50.000 15.93 0.00 0.00 4.24
1040 1068 2.201732 GATCATAGGAAAACGCGAGCA 58.798 47.619 15.93 0.00 0.00 4.26
1041 1069 1.527311 GGATCATAGGAAAACGCGAGC 59.473 52.381 15.93 0.00 0.00 5.03
1042 1070 3.099267 AGGATCATAGGAAAACGCGAG 57.901 47.619 15.93 0.00 0.00 5.03
1043 1071 4.321750 GGATAGGATCATAGGAAAACGCGA 60.322 45.833 15.93 0.00 0.00 5.87
1044 1072 3.927142 GGATAGGATCATAGGAAAACGCG 59.073 47.826 3.53 3.53 0.00 6.01
1045 1073 4.254492 GGGATAGGATCATAGGAAAACGC 58.746 47.826 0.00 0.00 0.00 4.84
1093 1121 2.253758 TGGAAGTGTGCAGCTTCGC 61.254 57.895 18.88 14.16 42.23 4.70
1095 1123 1.571460 CGTGGAAGTGTGCAGCTTC 59.429 57.895 17.89 17.89 41.01 3.86
1112 1154 0.179134 GGAGCACTGGTAGTACAGCG 60.179 60.000 2.06 0.00 42.21 5.18
1113 1155 0.179134 CGGAGCACTGGTAGTACAGC 60.179 60.000 2.06 0.76 42.21 4.40
1608 1691 0.391661 GAGATGCAAGCGAACCTCCA 60.392 55.000 0.00 0.00 0.00 3.86
1625 1722 1.068748 AGCAAAGCAATCAACAGCGAG 60.069 47.619 0.00 0.00 35.48 5.03
1627 1724 1.774639 AAGCAAAGCAATCAACAGCG 58.225 45.000 0.00 0.00 35.48 5.18
1631 1728 3.310501 ACTGCAAAAGCAAAGCAATCAAC 59.689 39.130 0.00 0.00 37.89 3.18
1649 1748 9.761504 ATGAAGATGTATATATCATAGCACTGC 57.238 33.333 11.55 0.00 0.00 4.40
1666 1765 2.421725 TGGCCCTATCCATGAAGATGT 58.578 47.619 0.00 0.00 0.00 3.06
1667 1766 3.733883 ATGGCCCTATCCATGAAGATG 57.266 47.619 0.00 0.00 44.72 2.90
1668 1767 3.816842 GCAATGGCCCTATCCATGAAGAT 60.817 47.826 0.00 0.00 45.64 2.40
1669 1768 2.489619 GCAATGGCCCTATCCATGAAGA 60.490 50.000 0.00 0.00 45.64 2.87
1696 1805 1.265568 CAAATGTCGCATGCAGAAGC 58.734 50.000 19.57 5.94 42.57 3.86
1697 1806 1.904144 CCAAATGTCGCATGCAGAAG 58.096 50.000 19.57 0.57 0.00 2.85
1699 1808 1.242665 TGCCAAATGTCGCATGCAGA 61.243 50.000 19.57 13.08 0.00 4.26
1701 1810 1.080637 GTGCCAAATGTCGCATGCA 60.081 52.632 19.57 1.73 37.33 3.96
1702 1811 0.799534 GAGTGCCAAATGTCGCATGC 60.800 55.000 7.91 7.91 37.33 4.06
1706 1815 2.480555 CGGAGTGCCAAATGTCGC 59.519 61.111 0.00 0.00 0.00 5.19
1707 1816 2.480555 GCGGAGTGCCAAATGTCG 59.519 61.111 0.00 0.00 37.76 4.35
1708 1817 2.480555 CGCGGAGTGCCAAATGTC 59.519 61.111 0.00 0.00 42.08 3.06
1739 2598 4.569943 TGCAGAAGTCAAGTCATTCTACC 58.430 43.478 0.00 0.00 32.16 3.18
1792 2679 9.390795 CAAGAACAGAACATGAATAGTTTGAAG 57.609 33.333 0.00 0.00 0.00 3.02
1855 2742 8.641541 GTCCCCAACATGATGTAAATCATATTT 58.358 33.333 8.11 2.59 39.10 1.40
1856 2743 8.006564 AGTCCCCAACATGATGTAAATCATATT 58.993 33.333 8.11 0.53 39.10 1.28
1857 2744 7.529555 AGTCCCCAACATGATGTAAATCATAT 58.470 34.615 8.11 0.00 39.10 1.78
1887 2775 4.073549 AGAGGGAGTATATCTGTACACGC 58.926 47.826 0.00 0.00 0.00 5.34
1889 2777 6.376018 GGATCAGAGGGAGTATATCTGTACAC 59.624 46.154 0.00 0.00 41.01 2.90
1892 2780 6.720217 TGGATCAGAGGGAGTATATCTGTA 57.280 41.667 0.00 0.00 41.01 2.74
1893 2781 5.607168 TGGATCAGAGGGAGTATATCTGT 57.393 43.478 0.00 0.00 41.01 3.41
1894 2782 6.924913 TTTGGATCAGAGGGAGTATATCTG 57.075 41.667 0.00 0.00 41.47 2.90
1895 2783 9.621239 TTAATTTGGATCAGAGGGAGTATATCT 57.379 33.333 0.00 0.00 0.00 1.98
1899 2787 9.359653 CAAATTAATTTGGATCAGAGGGAGTAT 57.640 33.333 26.58 0.00 42.51 2.12
1900 2788 8.752005 CAAATTAATTTGGATCAGAGGGAGTA 57.248 34.615 26.58 0.00 42.51 2.59
1901 2789 7.651027 CAAATTAATTTGGATCAGAGGGAGT 57.349 36.000 26.58 0.00 42.51 3.85
1914 2802 5.594317 ACTCCCTCCGATCCAAATTAATTTG 59.406 40.000 27.09 27.09 45.04 2.32
1915 2803 5.766590 ACTCCCTCCGATCCAAATTAATTT 58.233 37.500 7.64 7.64 0.00 1.82
1916 2804 5.388599 ACTCCCTCCGATCCAAATTAATT 57.611 39.130 0.00 0.00 0.00 1.40
1917 2805 5.844516 TCTACTCCCTCCGATCCAAATTAAT 59.155 40.000 0.00 0.00 0.00 1.40
1918 2806 5.213519 TCTACTCCCTCCGATCCAAATTAA 58.786 41.667 0.00 0.00 0.00 1.40
1919 2807 4.811498 TCTACTCCCTCCGATCCAAATTA 58.189 43.478 0.00 0.00 0.00 1.40
1920 2808 3.654273 TCTACTCCCTCCGATCCAAATT 58.346 45.455 0.00 0.00 0.00 1.82
1921 2809 3.330126 TCTACTCCCTCCGATCCAAAT 57.670 47.619 0.00 0.00 0.00 2.32
1922 2810 2.840640 TCTACTCCCTCCGATCCAAA 57.159 50.000 0.00 0.00 0.00 3.28
1923 2811 2.840640 TTCTACTCCCTCCGATCCAA 57.159 50.000 0.00 0.00 0.00 3.53
1924 2812 2.667470 CTTTCTACTCCCTCCGATCCA 58.333 52.381 0.00 0.00 0.00 3.41
1925 2813 1.341852 GCTTTCTACTCCCTCCGATCC 59.658 57.143 0.00 0.00 0.00 3.36
1926 2814 2.032620 TGCTTTCTACTCCCTCCGATC 58.967 52.381 0.00 0.00 0.00 3.69
1927 2815 2.160721 TGCTTTCTACTCCCTCCGAT 57.839 50.000 0.00 0.00 0.00 4.18
1928 2816 1.549170 GTTGCTTTCTACTCCCTCCGA 59.451 52.381 0.00 0.00 0.00 4.55
1929 2817 1.275291 TGTTGCTTTCTACTCCCTCCG 59.725 52.381 0.00 0.00 0.00 4.63
1930 2818 3.055094 TGATGTTGCTTTCTACTCCCTCC 60.055 47.826 0.00 0.00 0.00 4.30
1931 2819 3.935828 GTGATGTTGCTTTCTACTCCCTC 59.064 47.826 0.00 0.00 0.00 4.30
1932 2820 3.307762 GGTGATGTTGCTTTCTACTCCCT 60.308 47.826 0.00 0.00 0.00 4.20
1933 2821 3.010420 GGTGATGTTGCTTTCTACTCCC 58.990 50.000 0.00 0.00 0.00 4.30
1939 2827 3.319122 GGTTTCTGGTGATGTTGCTTTCT 59.681 43.478 0.00 0.00 0.00 2.52
1940 2828 3.319122 AGGTTTCTGGTGATGTTGCTTTC 59.681 43.478 0.00 0.00 0.00 2.62
1951 2840 6.289064 ACTACTTTAGTTCAGGTTTCTGGTG 58.711 40.000 0.00 0.00 41.23 4.17
1952 2841 6.496144 ACTACTTTAGTTCAGGTTTCTGGT 57.504 37.500 0.00 0.00 41.23 4.00
2026 2917 2.749621 AGGCTAAAAAGATGCAGAACCG 59.250 45.455 0.00 0.00 0.00 4.44
2052 2943 3.575965 AATGAGCCATTTCGAAACACC 57.424 42.857 13.81 4.14 28.76 4.16
2056 2947 5.236047 CCAACAAAAATGAGCCATTTCGAAA 59.764 36.000 13.91 13.91 42.32 3.46
2059 2950 4.057432 ACCAACAAAAATGAGCCATTTCG 58.943 39.130 11.87 9.55 42.32 3.46
2060 2951 6.038050 TGAAACCAACAAAAATGAGCCATTTC 59.962 34.615 11.87 0.00 42.32 2.17
2178 3157 4.998051 ACCAATCACCTTCCATTACAGTT 58.002 39.130 0.00 0.00 0.00 3.16
2359 3338 2.004583 TGCAACAGGTGTATAGTCGC 57.995 50.000 0.00 0.00 0.00 5.19
2455 3446 4.298626 AGGCATAGAAGTCATTCCCACTA 58.701 43.478 0.00 0.00 35.94 2.74
2724 3722 4.819630 TGTTCCAACAACATCCTTCAGTAC 59.180 41.667 0.00 0.00 35.67 2.73
3169 4649 6.603201 ACCGAAAATCAACTATTCATGTGGAT 59.397 34.615 0.00 0.00 29.96 3.41
3682 5197 1.350071 TTCTTAGTTACCGCCCACCA 58.650 50.000 0.00 0.00 0.00 4.17
3857 5379 1.517832 GCGTAGGAGCTGACACCAT 59.482 57.895 0.00 0.00 0.00 3.55
3873 5395 0.370273 CGTCATTTCCGAGGAAAGCG 59.630 55.000 20.27 18.66 45.66 4.68
4576 6204 5.930837 TTTGATTGATTACCATGGGTTCC 57.069 39.130 18.09 3.08 37.09 3.62
4706 6336 9.554395 TGTCAAAGAAAGAGTACATAATCAACA 57.446 29.630 0.00 0.00 0.00 3.33
4860 6550 4.782019 TGTGATACTTTGCCAACCAATC 57.218 40.909 0.00 0.00 32.49 2.67
4987 6678 0.670162 CATCAACGAATGCCCATCCC 59.330 55.000 0.00 0.00 0.00 3.85
5073 6764 5.163754 GCAAGTACATAGAACGCAGGATTTT 60.164 40.000 0.00 0.00 0.00 1.82
5132 6823 9.601217 GAGATTAAGGCTTTTGTACATAAGAGA 57.399 33.333 24.75 9.03 0.00 3.10
5163 6854 8.029642 ACTTATTAACACTTCCATGTTCTTCG 57.970 34.615 0.00 0.00 41.89 3.79
5411 7105 2.224548 ACTCTTCCAGTTGCCACCTTAC 60.225 50.000 0.00 0.00 26.56 2.34
5433 7127 3.816920 CAGAGTCGTTGCGCGTCG 61.817 66.667 8.43 15.88 42.13 5.12
5520 7214 2.207590 GCCCCGTATAAAGAAGAACCG 58.792 52.381 0.00 0.00 0.00 4.44
5557 7259 3.642848 TGCAGCAAAAAGGAGAGGAAAAT 59.357 39.130 0.00 0.00 0.00 1.82
5774 7477 1.959282 GCCTGCTTATTCCCTGGAATG 59.041 52.381 19.39 6.75 43.75 2.67
5843 7546 6.729690 TCCAATCCTTGAAACAAAATGACT 57.270 33.333 0.00 0.00 0.00 3.41
6086 7795 3.094572 TCTATTTTCGAACGGAGGGAGT 58.905 45.455 0.00 0.00 0.00 3.85
6087 7796 3.795623 TCTATTTTCGAACGGAGGGAG 57.204 47.619 0.00 0.00 0.00 4.30
6088 7797 3.702548 TCATCTATTTTCGAACGGAGGGA 59.297 43.478 0.00 0.00 0.00 4.20
6089 7798 3.802685 GTCATCTATTTTCGAACGGAGGG 59.197 47.826 0.00 0.00 0.00 4.30
6090 7799 4.683832 AGTCATCTATTTTCGAACGGAGG 58.316 43.478 0.00 0.00 0.00 4.30
6091 7800 5.340803 TGAGTCATCTATTTTCGAACGGAG 58.659 41.667 0.00 0.00 0.00 4.63
6092 7801 5.319140 TGAGTCATCTATTTTCGAACGGA 57.681 39.130 0.00 0.00 0.00 4.69
6093 7802 5.577164 AGTTGAGTCATCTATTTTCGAACGG 59.423 40.000 0.00 0.00 0.00 4.44
6094 7803 6.633668 AGTTGAGTCATCTATTTTCGAACG 57.366 37.500 0.00 0.00 0.00 3.95
6095 7804 8.283291 ACAAAGTTGAGTCATCTATTTTCGAAC 58.717 33.333 0.00 0.00 0.00 3.95
6096 7805 8.378172 ACAAAGTTGAGTCATCTATTTTCGAA 57.622 30.769 4.14 0.00 0.00 3.71
6097 7806 7.962964 ACAAAGTTGAGTCATCTATTTTCGA 57.037 32.000 4.14 0.00 0.00 3.71
6098 7807 8.926710 AGTACAAAGTTGAGTCATCTATTTTCG 58.073 33.333 4.14 0.00 0.00 3.46
6105 7814 9.614792 AAACTTTAGTACAAAGTTGAGTCATCT 57.385 29.630 24.20 11.95 46.33 2.90
6106 7815 9.651718 CAAACTTTAGTACAAAGTTGAGTCATC 57.348 33.333 24.20 0.00 46.33 2.92
6107 7816 9.174166 ACAAACTTTAGTACAAAGTTGAGTCAT 57.826 29.630 24.20 12.87 46.33 3.06
6108 7817 8.556213 ACAAACTTTAGTACAAAGTTGAGTCA 57.444 30.769 24.20 0.00 46.33 3.41
6109 7818 9.911980 GTACAAACTTTAGTACAAAGTTGAGTC 57.088 33.333 24.20 17.79 46.33 3.36
6110 7819 9.439500 TGTACAAACTTTAGTACAAAGTTGAGT 57.561 29.630 24.20 24.33 46.33 3.41
6119 7828 9.439500 ACTCAACTTTGTACAAACTTTAGTACA 57.561 29.630 17.01 0.00 46.24 2.90
6120 7829 9.911980 GACTCAACTTTGTACAAACTTTAGTAC 57.088 33.333 17.01 10.77 40.68 2.73
6121 7830 9.656040 TGACTCAACTTTGTACAAACTTTAGTA 57.344 29.630 17.01 7.92 0.00 1.82
6122 7831 8.556213 TGACTCAACTTTGTACAAACTTTAGT 57.444 30.769 17.01 18.32 0.00 2.24
6123 7832 9.651718 GATGACTCAACTTTGTACAAACTTTAG 57.348 33.333 17.01 15.73 0.00 1.85
6124 7833 9.391006 AGATGACTCAACTTTGTACAAACTTTA 57.609 29.630 17.01 5.82 0.00 1.85
6125 7834 8.281212 AGATGACTCAACTTTGTACAAACTTT 57.719 30.769 17.01 10.24 0.00 2.66
6126 7835 7.865706 AGATGACTCAACTTTGTACAAACTT 57.134 32.000 17.01 11.53 0.00 2.66
6127 7836 9.561069 AATAGATGACTCAACTTTGTACAAACT 57.439 29.630 17.01 10.66 0.00 2.66
6131 7840 8.783093 CCAAAATAGATGACTCAACTTTGTACA 58.217 33.333 0.00 0.00 0.00 2.90
6132 7841 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
6133 7842 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
6134 7843 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
6135 7844 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
6136 7845 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
6137 7846 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
6138 7847 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
6139 7848 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
6140 7849 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
6141 7850 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
6142 7851 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
6143 7852 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
6144 7853 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
6145 7854 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
6146 7855 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
6147 7856 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
6148 7857 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
6149 7858 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
6150 7859 3.839490 TGTACTCCCTCCGTTCCAAAATA 59.161 43.478 0.00 0.00 0.00 1.40
6151 7860 2.640826 TGTACTCCCTCCGTTCCAAAAT 59.359 45.455 0.00 0.00 0.00 1.82
6152 7861 2.048601 TGTACTCCCTCCGTTCCAAAA 58.951 47.619 0.00 0.00 0.00 2.44
6153 7862 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
6154 7863 1.946984 ATGTACTCCCTCCGTTCCAA 58.053 50.000 0.00 0.00 0.00 3.53
6155 7864 1.829222 GAATGTACTCCCTCCGTTCCA 59.171 52.381 0.00 0.00 0.00 3.53
6156 7865 2.108970 AGAATGTACTCCCTCCGTTCC 58.891 52.381 0.00 0.00 0.00 3.62
6157 7866 3.889520 AAGAATGTACTCCCTCCGTTC 57.110 47.619 0.00 0.00 0.00 3.95
6158 7867 4.344390 GGATAAGAATGTACTCCCTCCGTT 59.656 45.833 0.00 0.00 0.00 4.44
6159 7868 3.896272 GGATAAGAATGTACTCCCTCCGT 59.104 47.826 0.00 0.00 0.00 4.69
6160 7869 4.153411 AGGATAAGAATGTACTCCCTCCG 58.847 47.826 0.00 0.00 0.00 4.63
6161 7870 6.099845 TCAAAGGATAAGAATGTACTCCCTCC 59.900 42.308 0.00 0.00 0.00 4.30
6162 7871 7.125792 TCAAAGGATAAGAATGTACTCCCTC 57.874 40.000 0.00 0.00 0.00 4.30
6163 7872 7.182930 AGTTCAAAGGATAAGAATGTACTCCCT 59.817 37.037 0.00 0.00 0.00 4.20
6164 7873 7.281100 CAGTTCAAAGGATAAGAATGTACTCCC 59.719 40.741 0.00 0.00 0.00 4.30
6165 7874 7.824779 ACAGTTCAAAGGATAAGAATGTACTCC 59.175 37.037 0.00 0.00 0.00 3.85
6166 7875 8.779354 ACAGTTCAAAGGATAAGAATGTACTC 57.221 34.615 0.00 0.00 0.00 2.59
6169 7878 9.667107 CCTAACAGTTCAAAGGATAAGAATGTA 57.333 33.333 0.00 0.00 0.00 2.29
6206 7915 5.587844 AGTGTAAGCTGGCAAAGATATCTTG 59.412 40.000 18.61 13.15 36.12 3.02
6209 7918 6.094048 TCAAAGTGTAAGCTGGCAAAGATATC 59.906 38.462 0.00 0.00 0.00 1.63
6340 8248 5.622770 AATAGTTGTTAACCTTGCGGAAG 57.377 39.130 10.08 10.08 0.00 3.46
6427 8342 1.408702 GTTCAGGGTGCAATGTTGTGT 59.591 47.619 0.00 0.00 0.00 3.72
6428 8343 1.408340 TGTTCAGGGTGCAATGTTGTG 59.592 47.619 0.00 0.00 0.00 3.33
6431 8346 2.071778 ACTGTTCAGGGTGCAATGTT 57.928 45.000 4.82 0.00 0.00 2.71
6499 8414 2.158769 TCCGCAAGTAGCCATCATTCAT 60.159 45.455 0.00 0.00 41.38 2.57
6500 8415 1.209261 TCCGCAAGTAGCCATCATTCA 59.791 47.619 0.00 0.00 41.38 2.57
6578 8495 0.315251 GGCCTGCTCCAAGAAAACAC 59.685 55.000 0.00 0.00 0.00 3.32
6579 8496 1.172180 CGGCCTGCTCCAAGAAAACA 61.172 55.000 0.00 0.00 0.00 2.83
6723 8641 1.566018 GACGCTCGGTTGTCCTTTGG 61.566 60.000 0.00 0.00 0.00 3.28
6729 8647 4.461784 GAGAGACGCTCGGTTGTC 57.538 61.111 0.00 0.00 35.36 3.18
6739 8657 0.101399 CCCTCATCAACCGAGAGACG 59.899 60.000 0.00 0.00 42.18 4.18
6743 8661 0.608130 CACACCCTCATCAACCGAGA 59.392 55.000 0.00 0.00 31.84 4.04
6881 8799 6.128254 GGAAAAGGTACACTAGTTGATGCTTC 60.128 42.308 0.00 0.00 0.00 3.86
6900 8818 4.910200 GGTGTACCAAGCCGAAGGAAAAG 61.910 52.174 0.00 0.00 44.13 2.27
6906 8824 0.608640 AGAGGTGTACCAAGCCGAAG 59.391 55.000 3.56 0.00 38.89 3.79
7089 9007 7.219484 ACAAATCCTCGATTGATTTCAAAGT 57.781 32.000 16.08 10.62 39.71 2.66
7117 9046 9.694137 ACAGTCTAGAACAAACATCTAACTTAC 57.306 33.333 0.00 0.00 0.00 2.34
7182 9194 7.330946 CCTACACTTATATAGCGCTGCAATTTA 59.669 37.037 22.90 2.26 0.00 1.40
7199 9211 6.351541 GGTGTGACATTATGGTCCTACACTTA 60.352 42.308 13.21 0.00 41.12 2.24
7227 9239 6.805885 TCAGAATGGAAGGAGAAGCATTCAAT 60.806 38.462 0.08 0.00 42.67 2.57
7242 9254 8.537728 AATGCACCTTATATTTCAGAATGGAA 57.462 30.769 0.00 0.00 38.46 3.53
7292 9304 2.223144 CACTCGGTTGATTTCAAAGCGA 59.777 45.455 9.67 9.67 42.92 4.93
7308 9320 6.810888 AAACAAATCACATTTTGACACTCG 57.189 33.333 4.10 0.00 38.58 4.18
7378 9390 4.948608 TTAGAAAACAAACGTGCACTCA 57.051 36.364 16.19 0.00 0.00 3.41
7413 9425 7.327975 TGTGACATTATGGTCCTACACTTTAG 58.672 38.462 0.00 0.00 36.97 1.85
7414 9426 7.247456 TGTGACATTATGGTCCTACACTTTA 57.753 36.000 0.00 0.00 36.97 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.