Multiple sequence alignment - TraesCS7D01G174200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G174200 chr7D 100.000 3844 0 0 1 3844 126667781 126671624 0.000000e+00 7099.0
1 TraesCS7D01G174200 chr7D 86.194 775 88 5 185 941 500933067 500932294 0.000000e+00 821.0
2 TraesCS7D01G174200 chr7B 98.272 984 14 3 938 1919 88244327 88243345 0.000000e+00 1720.0
3 TraesCS7D01G174200 chr7B 98.095 945 16 1 2023 2965 88243346 88242402 0.000000e+00 1644.0
4 TraesCS7D01G174200 chr7B 89.785 186 15 3 1 185 88244496 88244314 6.420000e-58 235.0
5 TraesCS7D01G174200 chr7B 96.639 119 4 0 1907 2025 450588148 450588030 8.420000e-47 198.0
6 TraesCS7D01G174200 chr7A 97.232 867 19 4 1057 1918 127594913 127595779 0.000000e+00 1463.0
7 TraesCS7D01G174200 chr7A 96.914 648 17 3 2389 3033 127601357 127602004 0.000000e+00 1083.0
8 TraesCS7D01G174200 chr7A 91.584 606 36 8 3077 3678 127602004 127602598 0.000000e+00 822.0
9 TraesCS7D01G174200 chr7A 98.143 377 3 3 2023 2397 127595777 127596151 0.000000e+00 654.0
10 TraesCS7D01G174200 chr7A 95.699 93 4 0 938 1030 127594822 127594914 2.390000e-32 150.0
11 TraesCS7D01G174200 chr1A 93.214 781 34 6 176 939 58404048 58404826 0.000000e+00 1131.0
12 TraesCS7D01G174200 chr6D 92.976 783 36 5 176 941 27835066 27834286 0.000000e+00 1123.0
13 TraesCS7D01G174200 chr5A 92.739 785 37 6 176 941 695769948 695770731 0.000000e+00 1116.0
14 TraesCS7D01G174200 chr5A 92.711 782 38 5 176 940 582852565 582853344 0.000000e+00 1110.0
15 TraesCS7D01G174200 chr5A 86.452 775 86 5 185 941 16723682 16724455 0.000000e+00 832.0
16 TraesCS7D01G174200 chr5A 94.488 127 7 0 1901 2027 645135354 645135228 3.030000e-46 196.0
17 TraesCS7D01G174200 chr5A 94.488 127 6 1 1899 2024 656477439 656477313 1.090000e-45 195.0
18 TraesCS7D01G174200 chr2A 92.337 783 42 4 176 941 16144397 16143616 0.000000e+00 1098.0
19 TraesCS7D01G174200 chr2A 91.247 457 24 2 496 936 713671554 713672010 3.280000e-170 608.0
20 TraesCS7D01G174200 chr3A 92.820 766 37 4 176 924 57800675 57801439 0.000000e+00 1094.0
21 TraesCS7D01G174200 chr3A 100.000 30 0 0 139 168 710698785 710698756 5.360000e-04 56.5
22 TraesCS7D01G174200 chr2D 93.115 610 24 4 346 938 110811824 110811216 0.000000e+00 878.0
23 TraesCS7D01G174200 chr2B 86.247 778 86 6 185 944 24924668 24923894 0.000000e+00 824.0
24 TraesCS7D01G174200 chr2B 98.246 114 2 0 1912 2025 494265411 494265524 2.340000e-47 200.0
25 TraesCS7D01G174200 chr2B 95.238 126 5 1 1905 2029 173803263 173803388 8.420000e-47 198.0
26 TraesCS7D01G174200 chr4A 90.728 302 11 3 656 941 684274552 684274852 1.670000e-103 387.0
27 TraesCS7D01G174200 chr4A 100.000 30 0 0 96 125 733031173 733031144 5.360000e-04 56.5
28 TraesCS7D01G174200 chr4A 100.000 30 0 0 96 125 733090453 733090424 5.360000e-04 56.5
29 TraesCS7D01G174200 chr4A 100.000 30 0 0 96 125 733163067 733163038 5.360000e-04 56.5
30 TraesCS7D01G174200 chr4A 100.000 30 0 0 96 125 733187895 733187866 5.360000e-04 56.5
31 TraesCS7D01G174200 chr4A 100.000 30 0 0 96 125 733213679 733213650 5.360000e-04 56.5
32 TraesCS7D01G174200 chr6A 98.319 119 2 0 1918 2036 509054402 509054284 3.890000e-50 209.0
33 TraesCS7D01G174200 chr6A 97.479 119 3 0 1906 2024 542057175 542057057 1.810000e-48 204.0
34 TraesCS7D01G174200 chr6A 94.531 128 3 4 1918 2042 106923552 106923426 1.090000e-45 195.0
35 TraesCS7D01G174200 chr6B 96.721 122 4 0 1910 2031 218024964 218024843 1.810000e-48 204.0
36 TraesCS7D01G174200 chr4B 94.595 37 2 0 130 166 618324446 618324482 1.490000e-04 58.4
37 TraesCS7D01G174200 chr3D 82.609 69 9 2 98 166 307934283 307934218 1.490000e-04 58.4
38 TraesCS7D01G174200 chrUn 100.000 30 0 0 96 125 392024498 392024527 5.360000e-04 56.5
39 TraesCS7D01G174200 chrUn 100.000 30 0 0 96 125 394131840 394131869 5.360000e-04 56.5
40 TraesCS7D01G174200 chr5B 100.000 29 0 0 99 127 653230157 653230129 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G174200 chr7D 126667781 126671624 3843 False 7099.000000 7099 100.000000 1 3844 1 chr7D.!!$F1 3843
1 TraesCS7D01G174200 chr7D 500932294 500933067 773 True 821.000000 821 86.194000 185 941 1 chr7D.!!$R1 756
2 TraesCS7D01G174200 chr7B 88242402 88244496 2094 True 1199.666667 1720 95.384000 1 2965 3 chr7B.!!$R2 2964
3 TraesCS7D01G174200 chr7A 127601357 127602598 1241 False 952.500000 1083 94.249000 2389 3678 2 chr7A.!!$F2 1289
4 TraesCS7D01G174200 chr7A 127594822 127596151 1329 False 755.666667 1463 97.024667 938 2397 3 chr7A.!!$F1 1459
5 TraesCS7D01G174200 chr1A 58404048 58404826 778 False 1131.000000 1131 93.214000 176 939 1 chr1A.!!$F1 763
6 TraesCS7D01G174200 chr6D 27834286 27835066 780 True 1123.000000 1123 92.976000 176 941 1 chr6D.!!$R1 765
7 TraesCS7D01G174200 chr5A 695769948 695770731 783 False 1116.000000 1116 92.739000 176 941 1 chr5A.!!$F3 765
8 TraesCS7D01G174200 chr5A 582852565 582853344 779 False 1110.000000 1110 92.711000 176 940 1 chr5A.!!$F2 764
9 TraesCS7D01G174200 chr5A 16723682 16724455 773 False 832.000000 832 86.452000 185 941 1 chr5A.!!$F1 756
10 TraesCS7D01G174200 chr2A 16143616 16144397 781 True 1098.000000 1098 92.337000 176 941 1 chr2A.!!$R1 765
11 TraesCS7D01G174200 chr3A 57800675 57801439 764 False 1094.000000 1094 92.820000 176 924 1 chr3A.!!$F1 748
12 TraesCS7D01G174200 chr2D 110811216 110811824 608 True 878.000000 878 93.115000 346 938 1 chr2D.!!$R1 592
13 TraesCS7D01G174200 chr2B 24923894 24924668 774 True 824.000000 824 86.247000 185 944 1 chr2B.!!$R1 759

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
535 537 0.910088 GTGGTGGCTAGGGTCTCCTT 60.91 60.000 0.00 0.0 41.56 3.36 F
1945 1970 1.060122 CCGTTCGGAATTACTTGTCGC 59.94 52.381 5.19 0.0 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2007 2032 0.033796 ACATACTCCCTCCGTTCGGA 60.034 55.0 13.34 13.34 0.0 4.55 R
3757 3791 0.033090 AGTCGTTCGGTCTGGGAAAC 59.967 55.0 0.00 0.00 0.0 2.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 3.007398 CAGAGAGTTTGCCAGGTACTTCT 59.993 47.826 0.00 0.00 34.60 2.85
92 93 3.648545 AGAGAGTTTGCCAGGTACTTCTT 59.351 43.478 0.00 0.00 34.60 2.52
93 94 3.997681 GAGAGTTTGCCAGGTACTTCTTC 59.002 47.826 0.00 0.00 34.60 2.87
95 96 2.441750 AGTTTGCCAGGTACTTCTTCCA 59.558 45.455 0.00 0.00 34.60 3.53
97 98 3.350219 TTGCCAGGTACTTCTTCCATC 57.650 47.619 0.00 0.00 34.60 3.51
98 99 2.551270 TGCCAGGTACTTCTTCCATCT 58.449 47.619 0.00 0.00 34.60 2.90
99 100 2.912956 TGCCAGGTACTTCTTCCATCTT 59.087 45.455 0.00 0.00 34.60 2.40
100 101 3.274288 GCCAGGTACTTCTTCCATCTTG 58.726 50.000 0.00 0.00 34.60 3.02
111 112 8.924511 ACTTCTTCCATCTTGTTTCTCAAATA 57.075 30.769 0.00 0.00 35.48 1.40
129 130 9.935241 TCTCAAATAGATGTATCTAGCATTTCC 57.065 33.333 7.57 0.00 42.20 3.13
140 141 8.623903 TGTATCTAGCATTTCCATTTGAATGAC 58.376 33.333 5.32 0.00 38.70 3.06
179 180 6.342111 GGAGGGAGTACTAAGACAAATTCTG 58.658 44.000 0.00 0.00 33.46 3.02
180 181 6.154706 GGAGGGAGTACTAAGACAAATTCTGA 59.845 42.308 0.00 0.00 33.46 3.27
181 182 7.176589 AGGGAGTACTAAGACAAATTCTGAG 57.823 40.000 0.00 0.00 38.72 3.35
228 229 6.108687 TCTGATGCGTGACAGAATTATCTTT 58.891 36.000 0.00 0.00 39.68 2.52
246 247 5.762179 TCTTTATCTTTTGGAGAGCCTGA 57.238 39.130 0.00 0.00 37.93 3.86
300 301 1.153349 GGAATCCGTCACAGGCTCC 60.153 63.158 0.00 0.00 0.00 4.70
322 323 6.950545 TCCGCTAATTTTGTGGATAATTACG 58.049 36.000 8.75 0.00 38.95 3.18
329 330 3.891422 TGTGGATAATTACGGGTCGTT 57.109 42.857 0.00 0.00 41.54 3.85
382 383 6.822170 GGTGGACTCGAAGAATAAAGGTAAAT 59.178 38.462 0.00 0.00 34.09 1.40
442 444 1.228367 CTCAGGTGGCTTGGCAACT 60.228 57.895 8.99 8.99 32.24 3.16
529 531 2.933834 GGGTGTGGTGGCTAGGGT 60.934 66.667 0.00 0.00 0.00 4.34
535 537 0.910088 GTGGTGGCTAGGGTCTCCTT 60.910 60.000 0.00 0.00 41.56 3.36
648 650 9.251440 TCTATATAGGTATTACGCTCCACAATT 57.749 33.333 9.89 0.00 0.00 2.32
743 756 7.423844 TGAAGAAGGAAGCAATGAGTATCTA 57.576 36.000 0.00 0.00 34.92 1.98
788 801 9.030301 CAAAATTTCAAAGATTAACCGTTCAGT 57.970 29.630 0.00 0.00 0.00 3.41
857 875 8.450964 CAGACGGTATTCTTGTTAATGATGTTT 58.549 33.333 0.00 0.00 0.00 2.83
1344 1362 2.275318 CAGCTAAAGCAGAGTAGCCAC 58.725 52.381 4.54 0.00 43.13 5.01
1353 1371 2.163010 GCAGAGTAGCCACGTGTAGTTA 59.837 50.000 15.65 0.00 0.00 2.24
1362 1380 4.219944 AGCCACGTGTAGTTATGAAAGAGA 59.780 41.667 15.65 0.00 0.00 3.10
1931 1956 7.958053 ATTTATTTTATACTCCCTCCGTTCG 57.042 36.000 0.00 0.00 0.00 3.95
1932 1957 3.806625 TTTTATACTCCCTCCGTTCGG 57.193 47.619 4.74 4.74 0.00 4.30
1933 1958 2.734755 TTATACTCCCTCCGTTCGGA 57.265 50.000 13.34 13.34 0.00 4.55
1934 1959 2.734755 TATACTCCCTCCGTTCGGAA 57.265 50.000 14.79 0.00 33.41 4.30
1935 1960 2.083628 ATACTCCCTCCGTTCGGAAT 57.916 50.000 14.79 2.14 33.41 3.01
1936 1961 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
1937 1962 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
1938 1963 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
1939 1964 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
1940 1965 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
1941 1966 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
1942 1967 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
1943 1968 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
1944 1969 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
1945 1970 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
1946 1971 1.722464 CGTTCGGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
1947 1972 2.222508 CGTTCGGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
1948 1973 2.991190 GTTCGGAATTACTTGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
1949 1974 3.306917 TCGGAATTACTTGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
1950 1975 3.655486 TCGGAATTACTTGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
1951 1976 4.250464 TCGGAATTACTTGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
1952 1977 4.092821 TCGGAATTACTTGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
1953 1978 4.662145 GGAATTACTTGTCGCAGAAATGG 58.338 43.478 0.00 0.00 39.69 3.16
1954 1979 4.394920 GGAATTACTTGTCGCAGAAATGGA 59.605 41.667 0.00 0.00 39.69 3.41
1955 1980 5.066505 GGAATTACTTGTCGCAGAAATGGAT 59.933 40.000 0.00 0.00 39.69 3.41
1956 1981 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
1957 1982 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
1958 1983 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
1959 1984 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
1960 1985 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
1961 1986 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
1962 1987 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
1963 1988 5.532557 TGTCGCAGAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 39.69 2.43
1964 1989 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
1965 1990 5.631512 GTCGCAGAAATGGATGTATCTAGAC 59.368 44.000 0.00 0.00 39.69 2.59
1966 1991 4.618912 CGCAGAAATGGATGTATCTAGACG 59.381 45.833 0.00 0.00 0.00 4.18
1967 1992 5.533482 GCAGAAATGGATGTATCTAGACGT 58.467 41.667 0.00 0.00 0.00 4.34
1968 1993 6.567891 CGCAGAAATGGATGTATCTAGACGTA 60.568 42.308 0.00 0.00 0.00 3.57
1969 1994 7.316640 GCAGAAATGGATGTATCTAGACGTAT 58.683 38.462 0.00 0.00 0.00 3.06
1970 1995 7.815068 GCAGAAATGGATGTATCTAGACGTATT 59.185 37.037 0.00 0.00 0.00 1.89
1971 1996 9.698309 CAGAAATGGATGTATCTAGACGTATTT 57.302 33.333 0.00 0.00 0.00 1.40
1995 2020 9.542462 TTTTAGTTCTAGATACATCCATTTCCG 57.458 33.333 0.00 0.00 0.00 4.30
1996 2021 6.978674 AGTTCTAGATACATCCATTTCCGA 57.021 37.500 0.00 0.00 0.00 4.55
1997 2022 6.987386 AGTTCTAGATACATCCATTTCCGAG 58.013 40.000 0.00 0.00 0.00 4.63
1998 2023 6.778069 AGTTCTAGATACATCCATTTCCGAGA 59.222 38.462 0.00 0.00 0.00 4.04
1999 2024 6.576662 TCTAGATACATCCATTTCCGAGAC 57.423 41.667 0.00 0.00 0.00 3.36
2000 2025 6.068670 TCTAGATACATCCATTTCCGAGACA 58.931 40.000 0.00 0.00 0.00 3.41
2001 2026 5.614324 AGATACATCCATTTCCGAGACAA 57.386 39.130 0.00 0.00 0.00 3.18
2002 2027 5.605534 AGATACATCCATTTCCGAGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
2003 2028 3.703001 ACATCCATTTCCGAGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
2004 2029 4.819105 ACATCCATTTCCGAGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
2005 2030 5.160607 ACATCCATTTCCGAGACAAGTAA 57.839 39.130 0.00 0.00 0.00 2.24
2006 2031 5.745227 ACATCCATTTCCGAGACAAGTAAT 58.255 37.500 0.00 0.00 0.00 1.89
2007 2032 6.180472 ACATCCATTTCCGAGACAAGTAATT 58.820 36.000 0.00 0.00 0.00 1.40
2008 2033 6.316390 ACATCCATTTCCGAGACAAGTAATTC 59.684 38.462 0.00 0.00 0.00 2.17
2009 2034 5.183228 TCCATTTCCGAGACAAGTAATTCC 58.817 41.667 0.00 0.00 0.00 3.01
2010 2035 4.034048 CCATTTCCGAGACAAGTAATTCCG 59.966 45.833 0.00 0.00 0.00 4.30
2011 2036 4.524316 TTTCCGAGACAAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
2012 2037 4.524316 TTCCGAGACAAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
2013 2038 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
2014 2039 2.597305 CCGAGACAAGTAATTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
2015 2040 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
2016 2041 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
2017 2042 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
2018 2043 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
2019 2044 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
2020 2045 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
2021 2046 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
2734 2763 5.884232 CCATCAAGAAGAGACCATTCATTGA 59.116 40.000 0.00 0.00 33.02 2.57
2780 2809 2.380941 CATGGGCAGATGGTTGATGAA 58.619 47.619 0.00 0.00 0.00 2.57
2977 3007 3.128589 CCGTGTATTTGGGACTGGAAATG 59.871 47.826 0.00 0.00 0.00 2.32
2984 3014 3.634397 TGGGACTGGAAATGATCAGAC 57.366 47.619 0.09 0.00 35.20 3.51
2988 3018 4.326826 GGACTGGAAATGATCAGACAACA 58.673 43.478 0.09 0.00 35.20 3.33
3005 3035 0.875908 ACATGACGATGCGCGCTAAT 60.876 50.000 33.29 18.95 46.04 1.73
3008 3038 2.943345 GACGATGCGCGCTAATGGG 61.943 63.158 33.29 16.89 46.04 4.00
3030 3060 4.142966 GGTTATACCACGCTGAAACTGAAC 60.143 45.833 0.00 0.00 38.42 3.18
3032 3062 0.107410 ACCACGCTGAAACTGAACCA 60.107 50.000 0.00 0.00 0.00 3.67
3033 3063 0.588252 CCACGCTGAAACTGAACCAG 59.412 55.000 0.00 0.00 37.52 4.00
3037 3067 1.680338 GCTGAAACTGAACCAGTGGT 58.320 50.000 9.70 9.70 44.62 4.16
3039 3069 3.211045 GCTGAAACTGAACCAGTGGTTA 58.789 45.455 27.46 14.34 46.95 2.85
3040 3070 3.251004 GCTGAAACTGAACCAGTGGTTAG 59.749 47.826 27.46 23.32 46.95 2.34
3041 3071 3.815401 CTGAAACTGAACCAGTGGTTAGG 59.185 47.826 27.46 22.58 46.95 2.69
3042 3072 3.201266 TGAAACTGAACCAGTGGTTAGGT 59.799 43.478 27.46 23.19 46.95 3.08
3043 3073 3.487120 AACTGAACCAGTGGTTAGGTC 57.513 47.619 27.46 15.62 46.95 3.85
3044 3074 2.404559 ACTGAACCAGTGGTTAGGTCA 58.595 47.619 27.46 19.29 46.95 4.02
3045 3075 2.979678 ACTGAACCAGTGGTTAGGTCAT 59.020 45.455 27.46 3.47 46.95 3.06
3046 3076 4.164981 ACTGAACCAGTGGTTAGGTCATA 58.835 43.478 27.46 7.41 46.95 2.15
3047 3077 4.783227 ACTGAACCAGTGGTTAGGTCATAT 59.217 41.667 27.46 9.67 46.95 1.78
3048 3078 5.962031 ACTGAACCAGTGGTTAGGTCATATA 59.038 40.000 27.46 5.19 46.95 0.86
3049 3079 6.098409 ACTGAACCAGTGGTTAGGTCATATAG 59.902 42.308 27.46 11.42 46.95 1.31
3050 3080 6.199376 TGAACCAGTGGTTAGGTCATATAGA 58.801 40.000 27.46 0.00 46.95 1.98
3051 3081 6.844388 TGAACCAGTGGTTAGGTCATATAGAT 59.156 38.462 27.46 0.00 46.95 1.98
3052 3082 8.008332 TGAACCAGTGGTTAGGTCATATAGATA 58.992 37.037 27.46 0.00 46.95 1.98
3053 3083 8.974292 AACCAGTGGTTAGGTCATATAGATAT 57.026 34.615 26.34 0.00 44.94 1.63
3054 3084 8.596781 ACCAGTGGTTAGGTCATATAGATATC 57.403 38.462 9.70 0.00 30.79 1.63
3055 3085 8.177456 ACCAGTGGTTAGGTCATATAGATATCA 58.823 37.037 9.70 0.00 30.79 2.15
3056 3086 8.470805 CCAGTGGTTAGGTCATATAGATATCAC 58.529 40.741 5.32 0.00 0.00 3.06
3057 3087 8.184848 CAGTGGTTAGGTCATATAGATATCACG 58.815 40.741 5.32 0.00 0.00 4.35
3058 3088 7.339721 AGTGGTTAGGTCATATAGATATCACGG 59.660 40.741 5.32 0.00 0.00 4.94
3059 3089 7.122353 GTGGTTAGGTCATATAGATATCACGGT 59.878 40.741 5.32 0.00 0.00 4.83
3060 3090 7.338703 TGGTTAGGTCATATAGATATCACGGTC 59.661 40.741 5.32 0.00 0.00 4.79
3061 3091 7.556996 GGTTAGGTCATATAGATATCACGGTCT 59.443 40.741 5.32 0.00 0.00 3.85
3062 3092 8.614346 GTTAGGTCATATAGATATCACGGTCTC 58.386 40.741 5.32 0.00 0.00 3.36
3063 3093 6.722328 AGGTCATATAGATATCACGGTCTCA 58.278 40.000 5.32 0.00 0.00 3.27
3064 3094 6.826231 AGGTCATATAGATATCACGGTCTCAG 59.174 42.308 5.32 0.00 0.00 3.35
3065 3095 6.824196 GGTCATATAGATATCACGGTCTCAGA 59.176 42.308 5.32 0.00 0.00 3.27
3066 3096 7.011950 GGTCATATAGATATCACGGTCTCAGAG 59.988 44.444 5.32 0.00 0.00 3.35
3067 3097 7.011950 GTCATATAGATATCACGGTCTCAGAGG 59.988 44.444 5.32 0.00 0.00 3.69
3068 3098 3.586470 AGATATCACGGTCTCAGAGGT 57.414 47.619 5.32 0.00 0.00 3.85
3069 3099 3.904717 AGATATCACGGTCTCAGAGGTT 58.095 45.455 5.32 0.00 0.00 3.50
3070 3100 3.634448 AGATATCACGGTCTCAGAGGTTG 59.366 47.826 5.32 0.00 0.00 3.77
3071 3101 0.247736 ATCACGGTCTCAGAGGTTGC 59.752 55.000 0.00 0.00 0.00 4.17
3072 3102 0.827925 TCACGGTCTCAGAGGTTGCT 60.828 55.000 0.00 0.00 0.00 3.91
3073 3103 0.034059 CACGGTCTCAGAGGTTGCTT 59.966 55.000 0.00 0.00 0.00 3.91
3074 3104 1.272490 CACGGTCTCAGAGGTTGCTTA 59.728 52.381 0.00 0.00 0.00 3.09
3075 3105 2.093973 CACGGTCTCAGAGGTTGCTTAT 60.094 50.000 0.00 0.00 0.00 1.73
3076 3106 3.130516 CACGGTCTCAGAGGTTGCTTATA 59.869 47.826 0.00 0.00 0.00 0.98
3077 3107 3.130693 ACGGTCTCAGAGGTTGCTTATAC 59.869 47.826 0.00 0.00 0.00 1.47
3078 3108 3.707793 GGTCTCAGAGGTTGCTTATACG 58.292 50.000 0.00 0.00 0.00 3.06
3079 3109 3.380637 GGTCTCAGAGGTTGCTTATACGA 59.619 47.826 0.00 0.00 0.00 3.43
3095 3125 7.145985 GCTTATACGACATCCTGAATCAAGTA 58.854 38.462 0.00 0.00 0.00 2.24
3096 3126 7.815068 GCTTATACGACATCCTGAATCAAGTAT 59.185 37.037 0.00 0.00 0.00 2.12
3104 3134 6.936900 ACATCCTGAATCAAGTATTATTCCCG 59.063 38.462 0.00 0.00 32.25 5.14
3120 3150 3.210232 TCCCGGTGTTTCACAATGTTA 57.790 42.857 0.00 0.00 35.86 2.41
3121 3151 3.757270 TCCCGGTGTTTCACAATGTTAT 58.243 40.909 0.00 0.00 35.86 1.89
3122 3152 4.145807 TCCCGGTGTTTCACAATGTTATT 58.854 39.130 0.00 0.00 35.86 1.40
3123 3153 4.585162 TCCCGGTGTTTCACAATGTTATTT 59.415 37.500 0.00 0.00 35.86 1.40
3124 3154 5.069251 TCCCGGTGTTTCACAATGTTATTTT 59.931 36.000 0.00 0.00 35.86 1.82
3125 3155 5.755861 CCCGGTGTTTCACAATGTTATTTTT 59.244 36.000 0.00 0.00 35.86 1.94
3181 3212 4.093998 GCCCTCTATATCAATTGATGCACG 59.906 45.833 27.59 14.45 36.05 5.34
3185 3216 5.989249 TCTATATCAATTGATGCACGCAAC 58.011 37.500 27.59 0.00 36.05 4.17
3186 3217 4.635833 ATATCAATTGATGCACGCAACA 57.364 36.364 27.59 7.60 36.05 3.33
3195 3226 5.058149 TGATGCACGCAACAATCTTTATT 57.942 34.783 0.00 0.00 0.00 1.40
3228 3259 1.214589 GCAGCAAGGCCAATGTCAG 59.785 57.895 5.01 0.00 0.00 3.51
3230 3261 1.228644 AGCAAGGCCAATGTCAGCA 60.229 52.632 5.01 0.00 0.00 4.41
3251 3282 7.611467 TCAGCAACAAGTGGATCAAGTATTATT 59.389 33.333 0.00 0.00 0.00 1.40
3294 3325 9.758651 GTAATTCATTTTAGTTTTGTCCCAAGT 57.241 29.630 0.00 0.00 0.00 3.16
3388 3419 7.062605 CACTATGAAAACATGTTCAATGAAGCC 59.937 37.037 12.39 0.00 40.76 4.35
3519 3553 8.527810 TCTTTTGACTTTACACAAAATGGAGTT 58.472 29.630 0.00 0.00 42.38 3.01
3537 3571 7.639113 TGGAGTTCCTTATATTGCGAATTTT 57.361 32.000 0.00 0.00 36.82 1.82
3582 3616 0.323302 TTCCACTATCAAGCACGGCA 59.677 50.000 0.00 0.00 0.00 5.69
3583 3617 0.323302 TCCACTATCAAGCACGGCAA 59.677 50.000 0.00 0.00 0.00 4.52
3678 3712 5.059833 AGTTCAACAAGGCTAGAGAAAGTG 58.940 41.667 0.00 0.00 0.00 3.16
3679 3713 4.689612 TCAACAAGGCTAGAGAAAGTGT 57.310 40.909 0.00 0.00 0.00 3.55
3680 3714 4.632153 TCAACAAGGCTAGAGAAAGTGTC 58.368 43.478 0.00 0.00 0.00 3.67
3681 3715 3.686916 ACAAGGCTAGAGAAAGTGTCC 57.313 47.619 0.00 0.00 0.00 4.02
3682 3716 2.972713 ACAAGGCTAGAGAAAGTGTCCA 59.027 45.455 0.00 0.00 0.00 4.02
3683 3717 3.007398 ACAAGGCTAGAGAAAGTGTCCAG 59.993 47.826 0.00 0.00 0.00 3.86
3684 3718 3.176924 AGGCTAGAGAAAGTGTCCAGA 57.823 47.619 0.00 0.00 0.00 3.86
3685 3719 3.511477 AGGCTAGAGAAAGTGTCCAGAA 58.489 45.455 0.00 0.00 0.00 3.02
3686 3720 4.100373 AGGCTAGAGAAAGTGTCCAGAAT 58.900 43.478 0.00 0.00 0.00 2.40
3687 3721 4.161377 AGGCTAGAGAAAGTGTCCAGAATC 59.839 45.833 0.00 0.00 0.00 2.52
3688 3722 4.438148 GCTAGAGAAAGTGTCCAGAATCC 58.562 47.826 0.00 0.00 0.00 3.01
3689 3723 4.161377 GCTAGAGAAAGTGTCCAGAATCCT 59.839 45.833 0.00 0.00 0.00 3.24
3690 3724 4.550076 AGAGAAAGTGTCCAGAATCCTG 57.450 45.455 0.00 0.00 40.09 3.86
3691 3725 3.906846 AGAGAAAGTGTCCAGAATCCTGT 59.093 43.478 0.00 0.00 38.74 4.00
3692 3726 3.999663 GAGAAAGTGTCCAGAATCCTGTG 59.000 47.826 0.00 0.00 38.74 3.66
3693 3727 2.867109 AAGTGTCCAGAATCCTGTGG 57.133 50.000 0.00 0.00 38.74 4.17
3694 3728 1.734655 AGTGTCCAGAATCCTGTGGT 58.265 50.000 0.00 0.00 37.28 4.16
3695 3729 2.057922 AGTGTCCAGAATCCTGTGGTT 58.942 47.619 0.00 0.00 37.28 3.67
3696 3730 2.154462 GTGTCCAGAATCCTGTGGTTG 58.846 52.381 0.00 0.00 37.28 3.77
3697 3731 1.774254 TGTCCAGAATCCTGTGGTTGT 59.226 47.619 0.00 0.00 37.28 3.32
3698 3732 2.976185 TGTCCAGAATCCTGTGGTTGTA 59.024 45.455 0.00 0.00 37.28 2.41
3699 3733 3.244422 TGTCCAGAATCCTGTGGTTGTAC 60.244 47.826 0.00 0.00 37.28 2.90
3700 3734 2.976185 TCCAGAATCCTGTGGTTGTACA 59.024 45.455 0.00 0.00 37.28 2.90
3701 3735 3.392947 TCCAGAATCCTGTGGTTGTACAA 59.607 43.478 3.59 3.59 37.28 2.41
3702 3736 3.753272 CCAGAATCCTGTGGTTGTACAAG 59.247 47.826 8.98 0.00 38.74 3.16
3703 3737 3.189287 CAGAATCCTGTGGTTGTACAAGC 59.811 47.826 26.90 26.90 39.12 4.01
3704 3738 2.200373 ATCCTGTGGTTGTACAAGCC 57.800 50.000 29.46 22.25 37.97 4.35
3705 3739 0.840617 TCCTGTGGTTGTACAAGCCA 59.159 50.000 29.46 24.15 37.97 4.75
3708 3742 3.103637 GTGGTTGTACAAGCCACCA 57.896 52.632 30.30 23.24 44.95 4.17
3709 3743 1.394618 GTGGTTGTACAAGCCACCAA 58.605 50.000 30.30 15.92 44.95 3.67
3710 3744 1.751924 GTGGTTGTACAAGCCACCAAA 59.248 47.619 30.30 15.38 44.95 3.28
3711 3745 2.166664 GTGGTTGTACAAGCCACCAAAA 59.833 45.455 30.30 14.83 44.95 2.44
3712 3746 2.428890 TGGTTGTACAAGCCACCAAAAG 59.571 45.455 29.46 0.00 37.97 2.27
3713 3747 2.223947 GGTTGTACAAGCCACCAAAAGG 60.224 50.000 24.08 0.00 33.03 3.11
3714 3748 2.429250 GTTGTACAAGCCACCAAAAGGT 59.571 45.455 8.98 0.00 0.00 3.50
3715 3749 2.741145 TGTACAAGCCACCAAAAGGTT 58.259 42.857 0.00 0.00 0.00 3.50
3716 3750 3.100671 TGTACAAGCCACCAAAAGGTTT 58.899 40.909 0.00 0.00 0.00 3.27
3717 3751 4.279145 TGTACAAGCCACCAAAAGGTTTA 58.721 39.130 0.00 0.00 0.00 2.01
3718 3752 4.339814 TGTACAAGCCACCAAAAGGTTTAG 59.660 41.667 0.00 0.00 0.00 1.85
3719 3753 3.371034 ACAAGCCACCAAAAGGTTTAGT 58.629 40.909 0.00 0.00 0.00 2.24
3720 3754 3.772572 ACAAGCCACCAAAAGGTTTAGTT 59.227 39.130 0.00 0.00 0.00 2.24
3721 3755 4.224147 ACAAGCCACCAAAAGGTTTAGTTT 59.776 37.500 0.00 0.00 0.00 2.66
3722 3756 5.182487 CAAGCCACCAAAAGGTTTAGTTTT 58.818 37.500 0.00 0.00 0.00 2.43
3723 3757 6.070710 ACAAGCCACCAAAAGGTTTAGTTTTA 60.071 34.615 0.00 0.00 0.00 1.52
3724 3758 6.156748 AGCCACCAAAAGGTTTAGTTTTAG 57.843 37.500 0.00 0.00 0.00 1.85
3725 3759 5.069914 AGCCACCAAAAGGTTTAGTTTTAGG 59.930 40.000 0.00 0.00 0.00 2.69
3726 3760 5.069383 GCCACCAAAAGGTTTAGTTTTAGGA 59.931 40.000 0.00 0.00 0.00 2.94
3727 3761 6.509656 CCACCAAAAGGTTTAGTTTTAGGAC 58.490 40.000 0.00 0.00 0.00 3.85
3728 3762 6.097129 CCACCAAAAGGTTTAGTTTTAGGACA 59.903 38.462 0.00 0.00 0.00 4.02
3729 3763 6.976349 CACCAAAAGGTTTAGTTTTAGGACAC 59.024 38.462 0.00 0.00 0.00 3.67
3730 3764 6.097270 ACCAAAAGGTTTAGTTTTAGGACACC 59.903 38.462 0.00 0.00 0.00 4.16
3731 3765 6.203647 CAAAAGGTTTAGTTTTAGGACACCG 58.796 40.000 0.00 0.00 0.00 4.94
3732 3766 4.961438 AGGTTTAGTTTTAGGACACCGA 57.039 40.909 0.00 0.00 0.00 4.69
3733 3767 5.494390 AGGTTTAGTTTTAGGACACCGAT 57.506 39.130 0.00 0.00 0.00 4.18
3734 3768 6.610075 AGGTTTAGTTTTAGGACACCGATA 57.390 37.500 0.00 0.00 0.00 2.92
3735 3769 7.191593 AGGTTTAGTTTTAGGACACCGATAT 57.808 36.000 0.00 0.00 0.00 1.63
3736 3770 7.627311 AGGTTTAGTTTTAGGACACCGATATT 58.373 34.615 0.00 0.00 0.00 1.28
3737 3771 7.767659 AGGTTTAGTTTTAGGACACCGATATTC 59.232 37.037 0.00 0.00 0.00 1.75
3738 3772 7.550196 GGTTTAGTTTTAGGACACCGATATTCA 59.450 37.037 0.00 0.00 0.00 2.57
3739 3773 8.385858 GTTTAGTTTTAGGACACCGATATTCAC 58.614 37.037 0.00 0.00 0.00 3.18
3740 3774 5.425630 AGTTTTAGGACACCGATATTCACC 58.574 41.667 0.00 0.00 0.00 4.02
3741 3775 5.046159 AGTTTTAGGACACCGATATTCACCA 60.046 40.000 0.00 0.00 0.00 4.17
3742 3776 2.981859 AGGACACCGATATTCACCAC 57.018 50.000 0.00 0.00 0.00 4.16
3743 3777 2.184533 AGGACACCGATATTCACCACA 58.815 47.619 0.00 0.00 0.00 4.17
3744 3778 2.093658 AGGACACCGATATTCACCACAC 60.094 50.000 0.00 0.00 0.00 3.82
3745 3779 1.924524 GACACCGATATTCACCACACG 59.075 52.381 0.00 0.00 0.00 4.49
3746 3780 1.274167 ACACCGATATTCACCACACGT 59.726 47.619 0.00 0.00 0.00 4.49
3747 3781 1.924524 CACCGATATTCACCACACGTC 59.075 52.381 0.00 0.00 0.00 4.34
3748 3782 1.134907 ACCGATATTCACCACACGTCC 60.135 52.381 0.00 0.00 0.00 4.79
3749 3783 1.197055 CGATATTCACCACACGTCCG 58.803 55.000 0.00 0.00 0.00 4.79
3750 3784 1.468565 CGATATTCACCACACGTCCGT 60.469 52.381 0.00 0.00 0.00 4.69
3751 3785 2.613691 GATATTCACCACACGTCCGTT 58.386 47.619 0.00 0.00 0.00 4.44
3752 3786 2.068837 TATTCACCACACGTCCGTTC 57.931 50.000 0.00 0.00 0.00 3.95
3753 3787 0.391597 ATTCACCACACGTCCGTTCT 59.608 50.000 0.00 0.00 0.00 3.01
3754 3788 0.528901 TTCACCACACGTCCGTTCTG 60.529 55.000 0.00 0.00 0.00 3.02
3755 3789 1.954146 CACCACACGTCCGTTCTGG 60.954 63.158 10.39 10.39 40.09 3.86
3756 3790 2.357034 CCACACGTCCGTTCTGGG 60.357 66.667 5.69 0.00 38.76 4.45
3757 3791 2.357034 CACACGTCCGTTCTGGGG 60.357 66.667 0.00 0.00 38.76 4.96
3758 3792 2.841044 ACACGTCCGTTCTGGGGT 60.841 61.111 0.00 0.00 38.76 4.95
3759 3793 2.424302 CACGTCCGTTCTGGGGTT 59.576 61.111 0.00 0.00 38.76 4.11
3760 3794 1.227734 CACGTCCGTTCTGGGGTTT 60.228 57.895 0.00 0.00 38.76 3.27
3761 3795 1.070275 ACGTCCGTTCTGGGGTTTC 59.930 57.895 0.00 0.00 38.76 2.78
3762 3796 1.670083 CGTCCGTTCTGGGGTTTCC 60.670 63.158 0.00 0.00 38.76 3.13
3772 3806 4.391869 GGGTTTCCCAGACCGAAC 57.608 61.111 0.00 0.00 44.65 3.95
3773 3807 1.670083 GGGTTTCCCAGACCGAACG 60.670 63.158 0.00 0.00 44.65 3.95
3774 3808 1.368579 GGTTTCCCAGACCGAACGA 59.631 57.895 0.00 0.00 0.00 3.85
3775 3809 0.947660 GGTTTCCCAGACCGAACGAC 60.948 60.000 0.00 0.00 0.00 4.34
3776 3810 0.033090 GTTTCCCAGACCGAACGACT 59.967 55.000 0.00 0.00 0.00 4.18
3777 3811 0.316204 TTTCCCAGACCGAACGACTC 59.684 55.000 0.00 0.00 0.00 3.36
3779 3813 2.623915 CCCAGACCGAACGACTCGT 61.624 63.158 0.00 0.00 46.65 4.18
3789 3823 2.202492 CGACTCGTTCGCCAGGAG 60.202 66.667 0.00 0.00 41.87 3.69
3790 3824 2.687805 CGACTCGTTCGCCAGGAGA 61.688 63.158 10.12 0.00 41.87 3.71
3791 3825 1.137825 GACTCGTTCGCCAGGAGAG 59.862 63.158 10.12 0.00 39.43 3.20
3792 3826 2.272918 GACTCGTTCGCCAGGAGAGG 62.273 65.000 10.12 0.00 39.43 3.69
3793 3827 3.068691 TCGTTCGCCAGGAGAGGG 61.069 66.667 0.00 0.00 0.00 4.30
3794 3828 3.068691 CGTTCGCCAGGAGAGGGA 61.069 66.667 0.00 0.00 0.00 4.20
3795 3829 2.579738 GTTCGCCAGGAGAGGGAC 59.420 66.667 0.00 0.00 0.00 4.46
3796 3830 3.068691 TTCGCCAGGAGAGGGACG 61.069 66.667 0.00 0.00 0.00 4.79
3797 3831 3.881019 TTCGCCAGGAGAGGGACGT 62.881 63.158 0.00 0.00 0.00 4.34
3798 3832 3.382832 CGCCAGGAGAGGGACGTT 61.383 66.667 0.00 0.00 0.00 3.99
3799 3833 2.579738 GCCAGGAGAGGGACGTTC 59.420 66.667 0.00 0.00 0.00 3.95
3800 3834 2.885861 CCAGGAGAGGGACGTTCG 59.114 66.667 0.00 0.00 0.00 3.95
3801 3835 1.677966 CCAGGAGAGGGACGTTCGA 60.678 63.158 0.00 0.00 0.00 3.71
3802 3836 1.507174 CAGGAGAGGGACGTTCGAC 59.493 63.158 0.00 0.00 0.00 4.20
3803 3837 1.678300 AGGAGAGGGACGTTCGACC 60.678 63.158 5.28 5.28 0.00 4.79
3804 3838 2.484203 GAGAGGGACGTTCGACCG 59.516 66.667 0.00 0.00 0.00 4.79
3805 3839 2.033141 AGAGGGACGTTCGACCGA 59.967 61.111 10.09 0.00 0.00 4.69
3806 3840 1.580845 GAGAGGGACGTTCGACCGAA 61.581 60.000 10.09 0.18 0.00 4.30
3817 3851 3.508648 TTCGACCGAACAAAATCGTTC 57.491 42.857 0.18 0.00 41.16 3.95
3824 3858 3.612472 GAACAAAATCGTTCGGTGGAA 57.388 42.857 0.00 0.00 36.26 3.53
3825 3859 3.551551 GAACAAAATCGTTCGGTGGAAG 58.448 45.455 0.00 0.00 36.26 3.46
3826 3860 2.841215 ACAAAATCGTTCGGTGGAAGA 58.159 42.857 0.00 0.00 31.49 2.87
3827 3861 3.207778 ACAAAATCGTTCGGTGGAAGAA 58.792 40.909 0.00 0.00 31.49 2.52
3828 3862 3.002965 ACAAAATCGTTCGGTGGAAGAAC 59.997 43.478 0.00 0.00 43.16 3.01
3829 3863 1.804601 AATCGTTCGGTGGAAGAACC 58.195 50.000 3.87 0.00 43.55 3.62
3830 3864 0.036671 ATCGTTCGGTGGAAGAACCC 60.037 55.000 3.87 0.00 43.55 4.11
3831 3865 1.670083 CGTTCGGTGGAAGAACCCC 60.670 63.158 3.87 0.00 43.55 4.95
3832 3866 1.759236 GTTCGGTGGAAGAACCCCT 59.241 57.895 0.00 0.00 41.38 4.79
3833 3867 0.978907 GTTCGGTGGAAGAACCCCTA 59.021 55.000 0.00 0.00 41.38 3.53
3834 3868 0.978907 TTCGGTGGAAGAACCCCTAC 59.021 55.000 0.00 0.00 36.84 3.18
3835 3869 0.178926 TCGGTGGAAGAACCCCTACA 60.179 55.000 0.00 0.00 36.84 2.74
3836 3870 0.249398 CGGTGGAAGAACCCCTACAG 59.751 60.000 0.00 0.00 36.84 2.74
3837 3871 0.035343 GGTGGAAGAACCCCTACAGC 60.035 60.000 0.00 0.00 38.00 4.40
3838 3872 0.690762 GTGGAAGAACCCCTACAGCA 59.309 55.000 0.00 0.00 38.00 4.41
3839 3873 0.690762 TGGAAGAACCCCTACAGCAC 59.309 55.000 0.00 0.00 38.00 4.40
3840 3874 0.391263 GGAAGAACCCCTACAGCACG 60.391 60.000 0.00 0.00 0.00 5.34
3841 3875 0.606604 GAAGAACCCCTACAGCACGA 59.393 55.000 0.00 0.00 0.00 4.35
3842 3876 1.001633 GAAGAACCCCTACAGCACGAA 59.998 52.381 0.00 0.00 0.00 3.85
3843 3877 0.320697 AGAACCCCTACAGCACGAAC 59.679 55.000 0.00 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 7.549488 CCTCAGGTAAGAATAAGATGTCGTTTT 59.451 37.037 0.00 0.00 0.00 2.43
43 44 2.359967 CCTGACCGGACCTTCTCCC 61.360 68.421 9.46 0.00 35.21 4.30
58 59 1.270907 AACTCTCTGTGGCCTACCTG 58.729 55.000 3.32 0.00 36.63 4.00
59 60 1.625818 CAAACTCTCTGTGGCCTACCT 59.374 52.381 3.32 0.00 36.63 3.08
91 92 8.868522 ACATCTATTTGAGAAACAAGATGGAA 57.131 30.769 18.39 0.00 42.65 3.53
111 112 8.985315 TTCAAATGGAAATGCTAGATACATCT 57.015 30.769 0.00 0.00 35.23 2.90
119 120 7.816031 AGTTTGTCATTCAAATGGAAATGCTAG 59.184 33.333 3.05 0.00 45.88 3.42
120 121 7.669427 AGTTTGTCATTCAAATGGAAATGCTA 58.331 30.769 3.05 0.00 45.88 3.49
158 159 6.937392 ACTCAGAATTTGTCTTAGTACTCCC 58.063 40.000 0.00 0.00 38.75 4.30
228 229 5.441718 AATGTCAGGCTCTCCAAAAGATA 57.558 39.130 0.00 0.00 32.19 1.98
300 301 6.140110 CCCGTAATTATCCACAAAATTAGCG 58.860 40.000 0.00 0.00 30.34 4.26
322 323 1.555477 CAAGCAACAAACAACGACCC 58.445 50.000 0.00 0.00 0.00 4.46
329 330 1.761784 AGGAATGGCAAGCAACAAACA 59.238 42.857 0.00 0.00 0.00 2.83
382 383 1.005097 TCTTAGACCAGGAGCGGTACA 59.995 52.381 0.00 0.00 40.22 2.90
529 531 6.729690 AAACAATGACATTTCCAAAGGAGA 57.270 33.333 0.00 0.00 31.21 3.71
743 756 5.435686 TTTGACCATAGGTAGCATCTTGT 57.564 39.130 0.00 0.00 35.25 3.16
788 801 2.885135 AAGATGAGCCACCACATTGA 57.115 45.000 0.00 0.00 0.00 2.57
857 875 0.179004 AAATTCACCACACAGGCCGA 60.179 50.000 0.00 0.00 43.14 5.54
1344 1362 9.530129 GAAATTTGTCTCTTTCATAACTACACG 57.470 33.333 0.00 0.00 32.77 4.49
1362 1380 7.856145 TTGCTTGGTAATTGTTGAAATTTGT 57.144 28.000 0.00 0.00 0.00 2.83
1746 1770 9.468532 AATCAAGTTGCAAAGAAAAAGAGTATC 57.531 29.630 0.00 0.00 0.00 2.24
1747 1771 9.822185 AAATCAAGTTGCAAAGAAAAAGAGTAT 57.178 25.926 0.00 0.00 0.00 2.12
1752 1776 7.064966 AGTCCAAATCAAGTTGCAAAGAAAAAG 59.935 33.333 0.00 0.00 0.00 2.27
1917 1942 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
1918 1943 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
1919 1944 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
1920 1945 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
1921 1946 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
1922 1947 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
1923 1948 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
1924 1949 2.598589 CGACAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
1925 1950 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
1926 1951 1.722464 TGCGACAAGTAATTCCGAACG 59.278 47.619 0.00 0.00 0.00 3.95
1927 1952 2.991190 TCTGCGACAAGTAATTCCGAAC 59.009 45.455 0.00 0.00 0.00 3.95
1928 1953 3.306917 TCTGCGACAAGTAATTCCGAA 57.693 42.857 0.00 0.00 0.00 4.30
1929 1954 3.306917 TTCTGCGACAAGTAATTCCGA 57.693 42.857 0.00 0.00 0.00 4.55
1930 1955 4.334443 CATTTCTGCGACAAGTAATTCCG 58.666 43.478 0.00 0.00 0.00 4.30
1931 1956 4.394920 TCCATTTCTGCGACAAGTAATTCC 59.605 41.667 0.00 0.00 0.00 3.01
1932 1957 5.545658 TCCATTTCTGCGACAAGTAATTC 57.454 39.130 0.00 0.00 0.00 2.17
1933 1958 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
1934 1959 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
1935 1960 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
1936 1961 3.937814 ACATCCATTTCTGCGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
1937 1962 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
1938 1963 4.813161 AGATACATCCATTTCTGCGACAAG 59.187 41.667 0.00 0.00 0.00 3.16
1939 1964 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
1940 1965 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
1941 1966 5.631512 GTCTAGATACATCCATTTCTGCGAC 59.368 44.000 0.00 0.00 0.00 5.19
1942 1967 5.562890 CGTCTAGATACATCCATTTCTGCGA 60.563 44.000 0.00 0.00 0.00 5.10
1943 1968 4.618912 CGTCTAGATACATCCATTTCTGCG 59.381 45.833 0.00 0.00 0.00 5.18
1944 1969 5.533482 ACGTCTAGATACATCCATTTCTGC 58.467 41.667 0.00 0.00 0.00 4.26
1945 1970 9.698309 AAATACGTCTAGATACATCCATTTCTG 57.302 33.333 0.00 0.00 0.00 3.02
1969 1994 9.542462 CGGAAATGGATGTATCTAGAACTAAAA 57.458 33.333 0.00 0.00 0.00 1.52
1970 1995 8.920174 TCGGAAATGGATGTATCTAGAACTAAA 58.080 33.333 0.00 0.00 0.00 1.85
1971 1996 8.473358 TCGGAAATGGATGTATCTAGAACTAA 57.527 34.615 0.00 0.00 0.00 2.24
1972 1997 7.942894 TCTCGGAAATGGATGTATCTAGAACTA 59.057 37.037 0.00 0.00 0.00 2.24
1973 1998 6.778069 TCTCGGAAATGGATGTATCTAGAACT 59.222 38.462 0.00 0.00 0.00 3.01
1974 1999 6.864165 GTCTCGGAAATGGATGTATCTAGAAC 59.136 42.308 0.00 0.00 0.00 3.01
1975 2000 6.549736 TGTCTCGGAAATGGATGTATCTAGAA 59.450 38.462 0.00 0.00 0.00 2.10
1976 2001 6.068670 TGTCTCGGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 0.00 2.43
1977 2002 6.332735 TGTCTCGGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
1978 2003 6.323996 ACTTGTCTCGGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 0.00 1.98
1979 2004 5.129485 ACTTGTCTCGGAAATGGATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
1980 2005 5.360591 ACTTGTCTCGGAAATGGATGTATC 58.639 41.667 0.00 0.00 0.00 2.24
1981 2006 5.359194 ACTTGTCTCGGAAATGGATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
1982 2007 4.819105 ACTTGTCTCGGAAATGGATGTA 57.181 40.909 0.00 0.00 0.00 2.29
1983 2008 3.703001 ACTTGTCTCGGAAATGGATGT 57.297 42.857 0.00 0.00 0.00 3.06
1984 2009 6.238484 GGAATTACTTGTCTCGGAAATGGATG 60.238 42.308 0.00 0.00 0.00 3.51
1985 2010 5.823045 GGAATTACTTGTCTCGGAAATGGAT 59.177 40.000 0.00 0.00 0.00 3.41
1986 2011 5.183228 GGAATTACTTGTCTCGGAAATGGA 58.817 41.667 0.00 0.00 0.00 3.41
1987 2012 4.034048 CGGAATTACTTGTCTCGGAAATGG 59.966 45.833 0.00 0.00 0.00 3.16
1988 2013 4.868171 TCGGAATTACTTGTCTCGGAAATG 59.132 41.667 0.00 0.00 0.00 2.32
1989 2014 5.080969 TCGGAATTACTTGTCTCGGAAAT 57.919 39.130 0.00 0.00 0.00 2.17
1990 2015 4.524316 TCGGAATTACTTGTCTCGGAAA 57.476 40.909 0.00 0.00 0.00 3.13
1991 2016 4.240096 GTTCGGAATTACTTGTCTCGGAA 58.760 43.478 0.00 0.00 0.00 4.30
1992 2017 3.671433 CGTTCGGAATTACTTGTCTCGGA 60.671 47.826 0.00 0.00 0.00 4.55
1993 2018 2.597305 CGTTCGGAATTACTTGTCTCGG 59.403 50.000 0.00 0.00 0.00 4.63
1994 2019 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
1995 2020 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
1996 2021 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
1997 2022 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
1998 2023 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
1999 2024 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
2000 2025 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
2001 2026 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
2002 2027 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
2003 2028 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
2004 2029 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
2005 2030 1.687123 CATACTCCCTCCGTTCGGAAT 59.313 52.381 14.79 2.14 33.41 3.01
2006 2031 1.108776 CATACTCCCTCCGTTCGGAA 58.891 55.000 14.79 0.00 33.41 4.30
2007 2032 0.033796 ACATACTCCCTCCGTTCGGA 60.034 55.000 13.34 13.34 0.00 4.55
2008 2033 0.822164 AACATACTCCCTCCGTTCGG 59.178 55.000 4.74 4.74 0.00 4.30
2009 2034 2.094390 TCAAACATACTCCCTCCGTTCG 60.094 50.000 0.00 0.00 0.00 3.95
2010 2035 3.522553 CTCAAACATACTCCCTCCGTTC 58.477 50.000 0.00 0.00 0.00 3.95
2011 2036 2.236395 CCTCAAACATACTCCCTCCGTT 59.764 50.000 0.00 0.00 0.00 4.44
2012 2037 1.831736 CCTCAAACATACTCCCTCCGT 59.168 52.381 0.00 0.00 0.00 4.69
2013 2038 1.139058 CCCTCAAACATACTCCCTCCG 59.861 57.143 0.00 0.00 0.00 4.63
2014 2039 2.170817 GTCCCTCAAACATACTCCCTCC 59.829 54.545 0.00 0.00 0.00 4.30
2015 2040 2.159085 CGTCCCTCAAACATACTCCCTC 60.159 54.545 0.00 0.00 0.00 4.30
2016 2041 1.831736 CGTCCCTCAAACATACTCCCT 59.168 52.381 0.00 0.00 0.00 4.20
2017 2042 1.553704 ACGTCCCTCAAACATACTCCC 59.446 52.381 0.00 0.00 0.00 4.30
2018 2043 3.329929 AACGTCCCTCAAACATACTCC 57.670 47.619 0.00 0.00 0.00 3.85
2019 2044 4.083484 CCAAAACGTCCCTCAAACATACTC 60.083 45.833 0.00 0.00 0.00 2.59
2020 2045 3.818773 CCAAAACGTCCCTCAAACATACT 59.181 43.478 0.00 0.00 0.00 2.12
2021 2046 3.566742 ACCAAAACGTCCCTCAAACATAC 59.433 43.478 0.00 0.00 0.00 2.39
2734 2763 6.875195 CACAATGGAAGGCAAGAAATAAACAT 59.125 34.615 0.00 0.00 0.00 2.71
2780 2809 3.285484 CCTCATGAGCTTTATGTTGGCT 58.715 45.455 17.76 0.00 39.16 4.75
2977 3007 2.034254 CGCATCGTCATGTTGTCTGATC 60.034 50.000 0.00 0.00 31.86 2.92
2984 3014 1.751536 TAGCGCGCATCGTCATGTTG 61.752 55.000 35.10 0.00 41.07 3.33
2988 3018 1.560004 CCATTAGCGCGCATCGTCAT 61.560 55.000 35.10 13.45 41.07 3.06
3005 3035 2.303600 AGTTTCAGCGTGGTATAACCCA 59.696 45.455 0.00 0.00 37.50 4.51
3008 3038 4.142966 GGTTCAGTTTCAGCGTGGTATAAC 60.143 45.833 0.00 0.00 0.00 1.89
3030 3060 8.470805 GTGATATCTATATGACCTAACCACTGG 58.529 40.741 3.98 0.00 0.00 4.00
3032 3062 7.339721 CCGTGATATCTATATGACCTAACCACT 59.660 40.741 3.98 0.00 0.00 4.00
3033 3063 7.122353 ACCGTGATATCTATATGACCTAACCAC 59.878 40.741 3.98 0.00 0.00 4.16
3034 3064 7.179966 ACCGTGATATCTATATGACCTAACCA 58.820 38.462 3.98 0.00 0.00 3.67
3037 3067 8.326529 TGAGACCGTGATATCTATATGACCTAA 58.673 37.037 3.98 0.00 0.00 2.69
3038 3068 7.858498 TGAGACCGTGATATCTATATGACCTA 58.142 38.462 3.98 0.00 0.00 3.08
3039 3069 6.722328 TGAGACCGTGATATCTATATGACCT 58.278 40.000 3.98 0.00 0.00 3.85
3040 3070 6.824196 TCTGAGACCGTGATATCTATATGACC 59.176 42.308 3.98 0.00 0.00 4.02
3041 3071 7.011950 CCTCTGAGACCGTGATATCTATATGAC 59.988 44.444 6.17 0.00 0.00 3.06
3042 3072 7.051000 CCTCTGAGACCGTGATATCTATATGA 58.949 42.308 6.17 0.00 0.00 2.15
3043 3073 6.826231 ACCTCTGAGACCGTGATATCTATATG 59.174 42.308 6.17 0.00 0.00 1.78
3044 3074 6.964464 ACCTCTGAGACCGTGATATCTATAT 58.036 40.000 6.17 0.00 0.00 0.86
3045 3075 6.375830 ACCTCTGAGACCGTGATATCTATA 57.624 41.667 6.17 0.00 0.00 1.31
3046 3076 5.249780 ACCTCTGAGACCGTGATATCTAT 57.750 43.478 6.17 0.00 0.00 1.98
3047 3077 4.708576 ACCTCTGAGACCGTGATATCTA 57.291 45.455 6.17 0.00 0.00 1.98
3048 3078 3.586470 ACCTCTGAGACCGTGATATCT 57.414 47.619 6.17 0.00 0.00 1.98
3049 3079 3.797184 GCAACCTCTGAGACCGTGATATC 60.797 52.174 6.17 0.00 0.00 1.63
3050 3080 2.101582 GCAACCTCTGAGACCGTGATAT 59.898 50.000 6.17 0.00 0.00 1.63
3051 3081 1.476891 GCAACCTCTGAGACCGTGATA 59.523 52.381 6.17 0.00 0.00 2.15
3052 3082 0.247736 GCAACCTCTGAGACCGTGAT 59.752 55.000 6.17 0.00 0.00 3.06
3053 3083 0.827925 AGCAACCTCTGAGACCGTGA 60.828 55.000 6.17 0.00 0.00 4.35
3054 3084 0.034059 AAGCAACCTCTGAGACCGTG 59.966 55.000 6.17 0.00 0.00 4.94
3055 3085 1.629043 TAAGCAACCTCTGAGACCGT 58.371 50.000 6.17 0.00 0.00 4.83
3056 3086 2.969628 ATAAGCAACCTCTGAGACCG 57.030 50.000 6.17 0.00 0.00 4.79
3057 3087 3.380637 TCGTATAAGCAACCTCTGAGACC 59.619 47.826 6.17 0.00 0.00 3.85
3058 3088 4.142447 TGTCGTATAAGCAACCTCTGAGAC 60.142 45.833 6.17 0.00 0.00 3.36
3059 3089 4.014406 TGTCGTATAAGCAACCTCTGAGA 58.986 43.478 6.17 0.00 0.00 3.27
3060 3090 4.371855 TGTCGTATAAGCAACCTCTGAG 57.628 45.455 0.00 0.00 0.00 3.35
3061 3091 4.202121 GGATGTCGTATAAGCAACCTCTGA 60.202 45.833 0.00 0.00 0.00 3.27
3062 3092 4.051922 GGATGTCGTATAAGCAACCTCTG 58.948 47.826 0.00 0.00 0.00 3.35
3063 3093 3.961408 AGGATGTCGTATAAGCAACCTCT 59.039 43.478 6.26 0.00 31.07 3.69
3064 3094 4.051922 CAGGATGTCGTATAAGCAACCTC 58.948 47.826 8.17 0.00 33.93 3.85
3065 3095 3.704566 TCAGGATGTCGTATAAGCAACCT 59.295 43.478 6.26 6.26 36.11 3.50
3066 3096 4.054780 TCAGGATGTCGTATAAGCAACC 57.945 45.455 0.00 0.00 37.40 3.77
3067 3097 5.753438 TGATTCAGGATGTCGTATAAGCAAC 59.247 40.000 0.00 0.00 37.40 4.17
3068 3098 5.912892 TGATTCAGGATGTCGTATAAGCAA 58.087 37.500 0.00 0.00 37.40 3.91
3069 3099 5.529581 TGATTCAGGATGTCGTATAAGCA 57.470 39.130 0.00 0.00 37.40 3.91
3070 3100 5.986135 ACTTGATTCAGGATGTCGTATAAGC 59.014 40.000 2.39 0.00 37.40 3.09
3071 3101 9.698309 AATACTTGATTCAGGATGTCGTATAAG 57.302 33.333 2.39 0.00 37.40 1.73
3075 3105 9.692749 GAATAATACTTGATTCAGGATGTCGTA 57.307 33.333 2.39 0.00 37.40 3.43
3076 3106 7.657761 GGAATAATACTTGATTCAGGATGTCGT 59.342 37.037 2.39 0.00 37.40 4.34
3077 3107 7.118390 GGGAATAATACTTGATTCAGGATGTCG 59.882 40.741 2.39 0.00 37.40 4.35
3078 3108 7.118390 CGGGAATAATACTTGATTCAGGATGTC 59.882 40.741 2.39 0.00 37.40 3.06
3079 3109 6.936900 CGGGAATAATACTTGATTCAGGATGT 59.063 38.462 2.39 0.00 37.40 3.06
3126 3156 8.808092 TCCAACCTTCTTAGTGAAAAAGAAAAA 58.192 29.630 0.53 0.00 41.21 1.94
3127 3157 8.356000 TCCAACCTTCTTAGTGAAAAAGAAAA 57.644 30.769 0.53 0.00 41.21 2.29
3130 3160 6.320418 GGTTCCAACCTTCTTAGTGAAAAAGA 59.680 38.462 0.83 0.00 45.75 2.52
3158 3188 4.093998 CGTGCATCAATTGATATAGAGGGC 59.906 45.833 20.32 16.94 32.63 5.19
3159 3189 4.093998 GCGTGCATCAATTGATATAGAGGG 59.906 45.833 20.32 7.83 32.63 4.30
3181 3212 8.924691 TGCATCAACTTTAATAAAGATTGTTGC 58.075 29.630 28.45 28.45 43.70 4.17
3185 3216 8.103924 GCGTTGCATCAACTTTAATAAAGATTG 58.896 33.333 18.55 16.66 41.62 2.67
3186 3217 7.812191 TGCGTTGCATCAACTTTAATAAAGATT 59.188 29.630 18.55 7.14 41.62 2.40
3195 3226 1.606189 TGCTGCGTTGCATCAACTTTA 59.394 42.857 7.91 0.00 41.62 1.85
3228 3259 7.196331 GGAATAATACTTGATCCACTTGTTGC 58.804 38.462 0.00 0.00 0.00 4.17
3230 3261 6.833933 GGGGAATAATACTTGATCCACTTGTT 59.166 38.462 0.00 0.00 30.71 2.83
3378 3409 0.829602 TTTTGCGGGGGCTTCATTGA 60.830 50.000 0.00 0.00 0.00 2.57
3388 3419 2.284190 ACATGTTTTTGTTTTGCGGGG 58.716 42.857 0.00 0.00 0.00 5.73
3431 3462 4.827692 TGTGCACACCCAATTAGTACTAG 58.172 43.478 17.42 0.00 0.00 2.57
3434 3465 4.006989 TCATGTGCACACCCAATTAGTAC 58.993 43.478 24.37 0.00 0.00 2.73
3435 3466 4.293662 TCATGTGCACACCCAATTAGTA 57.706 40.909 24.37 0.00 0.00 1.82
3436 3467 3.153369 TCATGTGCACACCCAATTAGT 57.847 42.857 24.37 0.00 0.00 2.24
3437 3468 3.181484 CCATCATGTGCACACCCAATTAG 60.181 47.826 24.37 6.82 0.00 1.73
3445 3477 4.864247 GGAAAAATACCATCATGTGCACAC 59.136 41.667 24.37 3.56 0.00 3.82
3504 3537 8.682710 GCAATATAAGGAACTCCATTTTGTGTA 58.317 33.333 0.00 0.00 38.49 2.90
3537 3571 2.095969 GTCCAATTTTGATCACGCACGA 60.096 45.455 0.00 0.00 0.00 4.35
3544 3578 2.595750 ACCCGGTCCAATTTTGATCA 57.404 45.000 0.00 0.00 0.00 2.92
3545 3579 2.165641 GGAACCCGGTCCAATTTTGATC 59.834 50.000 6.23 0.00 37.65 2.92
3582 3616 6.098982 TCCCATTACTTTTGTGTTGTTCCATT 59.901 34.615 0.00 0.00 0.00 3.16
3583 3617 5.600484 TCCCATTACTTTTGTGTTGTTCCAT 59.400 36.000 0.00 0.00 0.00 3.41
3593 3627 3.336694 ACCTGGGATCCCATTACTTTTGT 59.663 43.478 33.89 16.45 46.15 2.83
3597 3631 4.692523 AAAACCTGGGATCCCATTACTT 57.307 40.909 33.89 20.64 46.15 2.24
3678 3712 2.568623 ACAACCACAGGATTCTGGAC 57.431 50.000 5.84 0.00 44.99 4.02
3679 3713 2.976185 TGTACAACCACAGGATTCTGGA 59.024 45.455 5.84 0.00 44.99 3.86
3680 3714 3.417069 TGTACAACCACAGGATTCTGG 57.583 47.619 5.84 0.00 44.99 3.86
3681 3715 3.189287 GCTTGTACAACCACAGGATTCTG 59.811 47.826 3.59 0.00 46.10 3.02
3682 3716 3.412386 GCTTGTACAACCACAGGATTCT 58.588 45.455 3.59 0.00 0.00 2.40
3683 3717 2.488153 GGCTTGTACAACCACAGGATTC 59.512 50.000 17.27 0.00 0.00 2.52
3684 3718 2.158534 TGGCTTGTACAACCACAGGATT 60.159 45.455 19.62 0.00 0.00 3.01
3685 3719 1.423541 TGGCTTGTACAACCACAGGAT 59.576 47.619 19.62 0.00 0.00 3.24
3686 3720 0.840617 TGGCTTGTACAACCACAGGA 59.159 50.000 19.62 3.99 0.00 3.86
3687 3721 3.412722 TGGCTTGTACAACCACAGG 57.587 52.632 19.62 6.01 0.00 4.00
3691 3725 2.145397 TTTGGTGGCTTGTACAACCA 57.855 45.000 19.62 19.62 0.00 3.67
3692 3726 2.223947 CCTTTTGGTGGCTTGTACAACC 60.224 50.000 3.59 11.60 34.07 3.77
3693 3727 3.092334 CCTTTTGGTGGCTTGTACAAC 57.908 47.619 3.59 2.04 34.07 3.32
3707 3741 6.038492 TCGGTGTCCTAAAACTAAACCTTTTG 59.962 38.462 0.00 0.00 0.00 2.44
3708 3742 6.121590 TCGGTGTCCTAAAACTAAACCTTTT 58.878 36.000 0.00 0.00 0.00 2.27
3709 3743 5.683681 TCGGTGTCCTAAAACTAAACCTTT 58.316 37.500 0.00 0.00 0.00 3.11
3710 3744 5.294734 TCGGTGTCCTAAAACTAAACCTT 57.705 39.130 0.00 0.00 0.00 3.50
3711 3745 4.961438 TCGGTGTCCTAAAACTAAACCT 57.039 40.909 0.00 0.00 0.00 3.50
3712 3746 7.550196 TGAATATCGGTGTCCTAAAACTAAACC 59.450 37.037 0.00 0.00 0.00 3.27
3713 3747 8.385858 GTGAATATCGGTGTCCTAAAACTAAAC 58.614 37.037 0.00 0.00 0.00 2.01
3714 3748 7.550196 GGTGAATATCGGTGTCCTAAAACTAAA 59.450 37.037 0.00 0.00 0.00 1.85
3715 3749 7.043565 GGTGAATATCGGTGTCCTAAAACTAA 58.956 38.462 0.00 0.00 0.00 2.24
3716 3750 6.154877 TGGTGAATATCGGTGTCCTAAAACTA 59.845 38.462 0.00 0.00 0.00 2.24
3717 3751 5.046159 TGGTGAATATCGGTGTCCTAAAACT 60.046 40.000 0.00 0.00 0.00 2.66
3718 3752 5.064325 GTGGTGAATATCGGTGTCCTAAAAC 59.936 44.000 0.00 0.00 0.00 2.43
3719 3753 5.180271 GTGGTGAATATCGGTGTCCTAAAA 58.820 41.667 0.00 0.00 0.00 1.52
3720 3754 4.223255 TGTGGTGAATATCGGTGTCCTAAA 59.777 41.667 0.00 0.00 0.00 1.85
3721 3755 3.770388 TGTGGTGAATATCGGTGTCCTAA 59.230 43.478 0.00 0.00 0.00 2.69
3722 3756 3.131577 GTGTGGTGAATATCGGTGTCCTA 59.868 47.826 0.00 0.00 0.00 2.94
3723 3757 2.093658 GTGTGGTGAATATCGGTGTCCT 60.094 50.000 0.00 0.00 0.00 3.85
3724 3758 2.277084 GTGTGGTGAATATCGGTGTCC 58.723 52.381 0.00 0.00 0.00 4.02
3725 3759 1.924524 CGTGTGGTGAATATCGGTGTC 59.075 52.381 0.00 0.00 0.00 3.67
3726 3760 1.274167 ACGTGTGGTGAATATCGGTGT 59.726 47.619 0.00 0.00 0.00 4.16
3727 3761 1.924524 GACGTGTGGTGAATATCGGTG 59.075 52.381 0.00 0.00 0.00 4.94
3728 3762 1.134907 GGACGTGTGGTGAATATCGGT 60.135 52.381 0.00 0.00 0.00 4.69
3729 3763 1.567504 GGACGTGTGGTGAATATCGG 58.432 55.000 0.00 0.00 0.00 4.18
3730 3764 1.197055 CGGACGTGTGGTGAATATCG 58.803 55.000 0.00 0.00 0.00 2.92
3731 3765 2.288961 ACGGACGTGTGGTGAATATC 57.711 50.000 0.00 0.00 0.00 1.63
3732 3766 2.232941 AGAACGGACGTGTGGTGAATAT 59.767 45.455 0.00 0.00 0.00 1.28
3733 3767 1.614903 AGAACGGACGTGTGGTGAATA 59.385 47.619 0.00 0.00 0.00 1.75
3734 3768 0.391597 AGAACGGACGTGTGGTGAAT 59.608 50.000 0.00 0.00 0.00 2.57
3735 3769 0.528901 CAGAACGGACGTGTGGTGAA 60.529 55.000 0.00 0.00 0.00 3.18
3736 3770 1.066752 CAGAACGGACGTGTGGTGA 59.933 57.895 0.00 0.00 0.00 4.02
3737 3771 1.954146 CCAGAACGGACGTGTGGTG 60.954 63.158 14.94 4.43 36.56 4.17
3738 3772 2.420043 CCAGAACGGACGTGTGGT 59.580 61.111 14.94 0.00 36.56 4.16
3739 3773 2.357034 CCCAGAACGGACGTGTGG 60.357 66.667 15.81 15.81 36.56 4.17
3740 3774 2.357034 CCCCAGAACGGACGTGTG 60.357 66.667 0.00 0.00 36.56 3.82
3741 3775 1.974973 AAACCCCAGAACGGACGTGT 61.975 55.000 0.00 0.00 36.56 4.49
3742 3776 1.226030 GAAACCCCAGAACGGACGTG 61.226 60.000 0.00 0.00 36.56 4.49
3743 3777 1.070275 GAAACCCCAGAACGGACGT 59.930 57.895 0.00 0.00 36.56 4.34
3744 3778 1.670083 GGAAACCCCAGAACGGACG 60.670 63.158 0.00 0.00 36.56 4.79
3745 3779 4.391869 GGAAACCCCAGAACGGAC 57.608 61.111 0.00 0.00 36.56 4.79
3757 3791 0.033090 AGTCGTTCGGTCTGGGAAAC 59.967 55.000 0.00 0.00 0.00 2.78
3758 3792 0.316204 GAGTCGTTCGGTCTGGGAAA 59.684 55.000 0.00 0.00 0.00 3.13
3759 3793 1.859427 CGAGTCGTTCGGTCTGGGAA 61.859 60.000 3.82 0.00 45.54 3.97
3760 3794 2.330372 CGAGTCGTTCGGTCTGGGA 61.330 63.158 3.82 0.00 45.54 4.37
3761 3795 2.178521 CGAGTCGTTCGGTCTGGG 59.821 66.667 3.82 0.00 45.54 4.45
3773 3807 1.137825 CTCTCCTGGCGAACGAGTC 59.862 63.158 0.00 0.00 0.00 3.36
3774 3808 2.344203 CCTCTCCTGGCGAACGAGT 61.344 63.158 0.00 0.00 0.00 4.18
3775 3809 2.492090 CCTCTCCTGGCGAACGAG 59.508 66.667 0.00 0.00 0.00 4.18
3776 3810 3.068691 CCCTCTCCTGGCGAACGA 61.069 66.667 0.00 0.00 0.00 3.85
3777 3811 3.068691 TCCCTCTCCTGGCGAACG 61.069 66.667 0.00 0.00 0.00 3.95
3778 3812 2.579738 GTCCCTCTCCTGGCGAAC 59.420 66.667 0.00 0.00 0.00 3.95
3779 3813 3.068691 CGTCCCTCTCCTGGCGAA 61.069 66.667 0.00 0.00 0.00 4.70
3780 3814 3.881019 AACGTCCCTCTCCTGGCGA 62.881 63.158 0.00 0.00 0.00 5.54
3781 3815 3.358076 GAACGTCCCTCTCCTGGCG 62.358 68.421 0.00 0.00 0.00 5.69
3782 3816 2.579738 GAACGTCCCTCTCCTGGC 59.420 66.667 0.00 0.00 0.00 4.85
3783 3817 1.677966 TCGAACGTCCCTCTCCTGG 60.678 63.158 0.00 0.00 0.00 4.45
3784 3818 1.507174 GTCGAACGTCCCTCTCCTG 59.493 63.158 0.00 0.00 0.00 3.86
3785 3819 1.678300 GGTCGAACGTCCCTCTCCT 60.678 63.158 0.00 0.00 0.00 3.69
3786 3820 2.883621 GGTCGAACGTCCCTCTCC 59.116 66.667 0.00 0.00 0.00 3.71
3787 3821 1.580845 TTCGGTCGAACGTCCCTCTC 61.581 60.000 24.03 0.00 34.94 3.20
3788 3822 1.601759 TTCGGTCGAACGTCCCTCT 60.602 57.895 24.03 0.00 34.94 3.69
3789 3823 1.443363 GTTCGGTCGAACGTCCCTC 60.443 63.158 24.03 6.28 43.82 4.30
3790 3824 2.647297 GTTCGGTCGAACGTCCCT 59.353 61.111 24.03 0.00 43.82 4.20
3796 3830 3.212887 GAACGATTTTGTTCGGTCGAAC 58.787 45.455 24.06 24.06 44.90 3.95
3797 3831 3.508648 GAACGATTTTGTTCGGTCGAA 57.491 42.857 1.33 1.33 44.90 3.71
3804 3838 3.249080 TCTTCCACCGAACGATTTTGTTC 59.751 43.478 0.00 1.25 43.76 3.18
3805 3839 3.207778 TCTTCCACCGAACGATTTTGTT 58.792 40.909 0.00 0.00 34.02 2.83
3806 3840 2.841215 TCTTCCACCGAACGATTTTGT 58.159 42.857 0.00 0.00 0.00 2.83
3807 3841 3.551551 GTTCTTCCACCGAACGATTTTG 58.448 45.455 0.00 0.00 32.43 2.44
3808 3842 2.551032 GGTTCTTCCACCGAACGATTTT 59.449 45.455 0.00 0.00 41.19 1.82
3809 3843 2.148768 GGTTCTTCCACCGAACGATTT 58.851 47.619 0.00 0.00 41.19 2.17
3810 3844 1.609841 GGGTTCTTCCACCGAACGATT 60.610 52.381 0.00 0.00 41.19 3.34
3811 3845 0.036671 GGGTTCTTCCACCGAACGAT 60.037 55.000 0.00 0.00 41.19 3.73
3812 3846 1.368579 GGGTTCTTCCACCGAACGA 59.631 57.895 0.00 0.00 41.19 3.85
3813 3847 1.670083 GGGGTTCTTCCACCGAACG 60.670 63.158 0.00 0.00 41.19 3.95
3814 3848 0.978907 TAGGGGTTCTTCCACCGAAC 59.021 55.000 0.00 0.00 41.44 3.95
3815 3849 0.978907 GTAGGGGTTCTTCCACCGAA 59.021 55.000 0.00 0.00 41.44 4.30
3816 3850 0.178926 TGTAGGGGTTCTTCCACCGA 60.179 55.000 0.00 0.00 41.44 4.69
3817 3851 0.249398 CTGTAGGGGTTCTTCCACCG 59.751 60.000 0.00 0.00 41.44 4.94
3818 3852 0.035343 GCTGTAGGGGTTCTTCCACC 60.035 60.000 0.00 0.00 41.44 4.61
3819 3853 0.690762 TGCTGTAGGGGTTCTTCCAC 59.309 55.000 0.00 0.00 40.64 4.02
3820 3854 0.690762 GTGCTGTAGGGGTTCTTCCA 59.309 55.000 0.00 0.00 38.11 3.53
3821 3855 0.391263 CGTGCTGTAGGGGTTCTTCC 60.391 60.000 0.00 0.00 0.00 3.46
3822 3856 0.606604 TCGTGCTGTAGGGGTTCTTC 59.393 55.000 0.00 0.00 0.00 2.87
3823 3857 1.053424 TTCGTGCTGTAGGGGTTCTT 58.947 50.000 0.00 0.00 0.00 2.52
3824 3858 0.320697 GTTCGTGCTGTAGGGGTTCT 59.679 55.000 0.00 0.00 0.00 3.01
3825 3859 2.836944 GTTCGTGCTGTAGGGGTTC 58.163 57.895 0.00 0.00 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.