Multiple sequence alignment - TraesCS7D01G174100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G174100 chr7D 100.000 3136 0 0 974 4109 126507329 126504194 0.000000e+00 5792.0
1 TraesCS7D01G174100 chr7D 95.200 2125 93 5 974 3098 126681757 126683872 0.000000e+00 3350.0
2 TraesCS7D01G174100 chr7D 91.252 823 59 5 1312 2134 88363289 88362480 0.000000e+00 1109.0
3 TraesCS7D01G174100 chr7D 86.438 612 70 9 3503 4109 126684449 126685052 0.000000e+00 658.0
4 TraesCS7D01G174100 chr7D 100.000 342 0 0 1 342 126508302 126507961 2.080000e-177 632.0
5 TraesCS7D01G174100 chr7D 91.379 174 12 3 3327 3499 126684214 126684385 6.870000e-58 235.0
6 TraesCS7D01G174100 chr7D 96.629 89 3 0 3236 3324 529492524 529492436 9.200000e-32 148.0
7 TraesCS7D01G174100 chr7D 92.473 93 3 3 254 342 126681415 126681507 3.330000e-26 130.0
8 TraesCS7D01G174100 chr7D 88.136 59 4 2 3574 3632 615358739 615358794 2.650000e-07 67.6
9 TraesCS7D01G174100 chr7B 96.664 2128 65 2 974 3098 87174307 87172183 0.000000e+00 3531.0
10 TraesCS7D01G174100 chr7B 94.040 2282 99 12 974 3237 88245328 88247590 0.000000e+00 3426.0
11 TraesCS7D01G174100 chr7B 84.286 350 16 15 6 342 87174873 87174550 5.160000e-79 305.0
12 TraesCS7D01G174100 chr7B 96.111 180 4 1 3324 3500 88247596 88247775 1.440000e-74 291.0
13 TraesCS7D01G174100 chr7B 89.437 142 11 3 3359 3500 87170831 87170694 4.220000e-40 176.0
14 TraesCS7D01G174100 chr7B 87.500 120 10 3 3235 3349 206262763 206262644 2.580000e-27 134.0
15 TraesCS7D01G174100 chr7B 90.741 54 5 0 3566 3619 103460433 103460486 5.700000e-09 73.1
16 TraesCS7D01G174100 chr7A 93.533 2103 97 19 1152 3237 127607553 127609633 0.000000e+00 3094.0
17 TraesCS7D01G174100 chr7A 81.894 359 43 11 3377 3726 127609686 127610031 2.420000e-72 283.0
18 TraesCS7D01G174100 chr7A 94.828 174 9 0 974 1147 127607330 127607503 5.230000e-69 272.0
19 TraesCS7D01G174100 chr7A 90.110 182 16 2 3320 3500 127636385 127636565 6.870000e-58 235.0
20 TraesCS7D01G174100 chr7A 83.226 155 26 0 3502 3656 127636609 127636763 4.280000e-30 143.0
21 TraesCS7D01G174100 chr7A 91.250 80 7 0 263 342 127607010 127607089 4.340000e-20 110.0
22 TraesCS7D01G174100 chr4D 92.345 823 48 5 1312 2134 33240758 33241565 0.000000e+00 1157.0
23 TraesCS7D01G174100 chr4D 73.927 909 207 25 2054 2953 122258655 122257768 5.090000e-89 339.0
24 TraesCS7D01G174100 chr4D 87.970 133 16 0 979 1111 122303546 122303414 1.530000e-34 158.0
25 TraesCS7D01G174100 chr4D 82.418 91 15 1 991 1080 122171287 122171197 1.220000e-10 78.7
26 TraesCS7D01G174100 chr5D 91.981 823 51 5 1312 2134 457999143 457998336 0.000000e+00 1140.0
27 TraesCS7D01G174100 chr3D 91.859 823 54 4 1312 2134 538375321 538374512 0.000000e+00 1136.0
28 TraesCS7D01G174100 chr3D 91.373 823 58 4 1312 2134 26470223 26471032 0.000000e+00 1114.0
29 TraesCS7D01G174100 chr4A 74.335 865 196 22 2051 2908 448104222 448105067 1.090000e-90 344.0
30 TraesCS7D01G174100 chr4A 88.971 136 15 0 976 1111 447777147 447777282 7.060000e-38 169.0
31 TraesCS7D01G174100 chr4A 90.141 71 7 0 982 1052 448530467 448530537 4.370000e-15 93.5
32 TraesCS7D01G174100 chr4B 88.971 136 15 0 979 1114 186609246 186609111 7.060000e-38 169.0
33 TraesCS7D01G174100 chr4B 93.684 95 5 1 3235 3329 519352453 519352546 1.540000e-29 141.0
34 TraesCS7D01G174100 chr4B 73.529 238 41 15 3570 3786 42154802 42154566 2.050000e-08 71.3
35 TraesCS7D01G174100 chr2B 91.919 99 8 0 3224 3322 404425218 404425120 5.540000e-29 139.0
36 TraesCS7D01G174100 chr2B 85.333 75 8 2 3558 3632 439914966 439915037 1.580000e-09 75.0
37 TraesCS7D01G174100 chr5B 91.919 99 6 2 3226 3324 641796434 641796530 1.990000e-28 137.0
38 TraesCS7D01G174100 chr5A 95.349 86 4 0 3236 3321 99588660 99588575 1.990000e-28 137.0
39 TraesCS7D01G174100 chr3B 90.385 104 8 2 3219 3322 249860986 249860885 7.160000e-28 135.0
40 TraesCS7D01G174100 chr3B 89.720 107 8 3 3231 3334 567473508 567473614 2.580000e-27 134.0
41 TraesCS7D01G174100 chr6A 87.826 115 10 4 3232 3344 127215312 127215424 9.270000e-27 132.0
42 TraesCS7D01G174100 chr6A 88.136 59 4 2 3574 3632 547595823 547595878 2.650000e-07 67.6
43 TraesCS7D01G174100 chr6B 87.387 111 9 2 116 225 190128366 190128260 5.580000e-24 122.0
44 TraesCS7D01G174100 chr6B 86.486 111 10 2 116 225 212165388 212165282 2.600000e-22 117.0
45 TraesCS7D01G174100 chr1D 84.000 75 9 2 3558 3632 6633482 6633553 7.370000e-08 69.4
46 TraesCS7D01G174100 chr2A 82.432 74 10 2 3559 3632 382433449 382433519 1.230000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G174100 chr7D 126504194 126508302 4108 True 3212.000000 5792 100.00000 1 4109 2 chr7D.!!$R3 4108
1 TraesCS7D01G174100 chr7D 88362480 88363289 809 True 1109.000000 1109 91.25200 1312 2134 1 chr7D.!!$R1 822
2 TraesCS7D01G174100 chr7D 126681415 126685052 3637 False 1093.250000 3350 91.37250 254 4109 4 chr7D.!!$F2 3855
3 TraesCS7D01G174100 chr7B 88245328 88247775 2447 False 1858.500000 3426 95.07550 974 3500 2 chr7B.!!$F2 2526
4 TraesCS7D01G174100 chr7B 87170694 87174873 4179 True 1337.333333 3531 90.12900 6 3500 3 chr7B.!!$R2 3494
5 TraesCS7D01G174100 chr7A 127607010 127610031 3021 False 939.750000 3094 90.37625 263 3726 4 chr7A.!!$F1 3463
6 TraesCS7D01G174100 chr4D 33240758 33241565 807 False 1157.000000 1157 92.34500 1312 2134 1 chr4D.!!$F1 822
7 TraesCS7D01G174100 chr4D 122257768 122258655 887 True 339.000000 339 73.92700 2054 2953 1 chr4D.!!$R2 899
8 TraesCS7D01G174100 chr5D 457998336 457999143 807 True 1140.000000 1140 91.98100 1312 2134 1 chr5D.!!$R1 822
9 TraesCS7D01G174100 chr3D 538374512 538375321 809 True 1136.000000 1136 91.85900 1312 2134 1 chr3D.!!$R1 822
10 TraesCS7D01G174100 chr3D 26470223 26471032 809 False 1114.000000 1114 91.37300 1312 2134 1 chr3D.!!$F1 822
11 TraesCS7D01G174100 chr4A 448104222 448105067 845 False 344.000000 344 74.33500 2051 2908 1 chr4A.!!$F2 857

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
202 203 0.107703 TGGACGGCTGGCTTGATTAG 60.108 55.0 0.00 0.0 0.00 1.73 F
1258 1319 0.824759 GCCTTACCTCGAGGACATGT 59.175 55.0 37.69 17.5 36.33 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1929 2004 1.079750 GACCGCCTCGCTCTTCTTT 60.080 57.895 0.0 0.0 0.0 2.52 R
3154 3295 0.033796 CCACCATCAGTCCAAGCCAT 60.034 55.000 0.0 0.0 0.0 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 86 2.853542 TGGAGTGCCAAGAGCCCA 60.854 61.111 0.00 0.00 42.49 5.36
86 87 2.436109 GGAGTGCCAAGAGCCCAA 59.564 61.111 0.00 0.00 42.71 4.12
87 88 1.676967 GGAGTGCCAAGAGCCCAAG 60.677 63.158 0.00 0.00 42.71 3.61
99 100 2.832129 AGAGCCCAAGAAGATTACGTGA 59.168 45.455 0.00 0.00 0.00 4.35
101 102 1.666189 GCCCAAGAAGATTACGTGAGC 59.334 52.381 0.00 0.00 0.00 4.26
107 108 3.011119 AGAAGATTACGTGAGCTCGTCT 58.989 45.455 9.64 0.00 43.12 4.18
123 124 4.982916 GCTCGTCTCACCATTACGATATTT 59.017 41.667 0.00 0.00 43.88 1.40
138 139 5.685841 ACGATATTTGTTGGACGAAAACTG 58.314 37.500 0.00 0.00 0.00 3.16
147 148 1.050767 GACGAAAACTGGACGACGAG 58.949 55.000 0.00 0.00 0.00 4.18
157 158 1.134818 TGGACGACGAGGAATCCATTG 60.135 52.381 0.00 0.00 36.30 2.82
173 174 3.898509 TGGCGTGCCACAGTTTGC 61.899 61.111 10.06 0.00 41.89 3.68
174 175 3.595758 GGCGTGCCACAGTTTGCT 61.596 61.111 5.89 0.00 35.81 3.91
175 176 2.258013 GGCGTGCCACAGTTTGCTA 61.258 57.895 5.89 0.00 35.81 3.49
176 177 1.652012 GCGTGCCACAGTTTGCTAA 59.348 52.632 0.00 0.00 0.00 3.09
177 178 0.240945 GCGTGCCACAGTTTGCTAAT 59.759 50.000 0.00 0.00 0.00 1.73
178 179 1.466950 GCGTGCCACAGTTTGCTAATA 59.533 47.619 0.00 0.00 0.00 0.98
179 180 2.097466 GCGTGCCACAGTTTGCTAATAT 59.903 45.455 0.00 0.00 0.00 1.28
180 181 3.683989 CGTGCCACAGTTTGCTAATATG 58.316 45.455 0.00 0.00 0.00 1.78
181 182 3.438360 GTGCCACAGTTTGCTAATATGC 58.562 45.455 0.00 0.00 0.00 3.14
182 183 3.087781 TGCCACAGTTTGCTAATATGCA 58.912 40.909 0.00 0.00 41.65 3.96
183 184 3.700539 TGCCACAGTTTGCTAATATGCAT 59.299 39.130 3.79 3.79 42.96 3.96
184 185 4.046462 GCCACAGTTTGCTAATATGCATG 58.954 43.478 10.16 0.00 42.96 4.06
185 186 4.613944 CCACAGTTTGCTAATATGCATGG 58.386 43.478 10.16 0.00 42.96 3.66
186 187 4.338964 CCACAGTTTGCTAATATGCATGGA 59.661 41.667 10.16 0.00 42.96 3.41
187 188 5.276270 CACAGTTTGCTAATATGCATGGAC 58.724 41.667 10.16 0.00 42.96 4.02
202 203 0.107703 TGGACGGCTGGCTTGATTAG 60.108 55.000 0.00 0.00 0.00 1.73
219 220 2.455674 TAGCAGTGTCGTGCAAGAAT 57.544 45.000 3.20 0.00 46.60 2.40
225 226 2.435938 TCGTGCAAGAATCGGCCC 60.436 61.111 0.00 0.00 0.00 5.80
1029 1045 1.201647 GAGGAGGACATCGACGACAAA 59.798 52.381 0.00 0.00 0.00 2.83
1119 1135 1.229336 CACCACCACCTCCTCCTCT 60.229 63.158 0.00 0.00 0.00 3.69
1121 1137 2.664081 CCACCACCTCCTCCTCTGC 61.664 68.421 0.00 0.00 0.00 4.26
1251 1312 2.441532 TCCCCGCCTTACCTCGAG 60.442 66.667 5.13 5.13 0.00 4.04
1258 1319 0.824759 GCCTTACCTCGAGGACATGT 59.175 55.000 37.69 17.50 36.33 3.21
1446 1507 0.953960 GTTCGGCCGTCTTGAATGGT 60.954 55.000 27.15 0.00 36.30 3.55
2799 2874 4.796231 CTCCCGCGGGACAACGAG 62.796 72.222 42.66 27.49 39.76 4.18
3018 3093 0.888285 AGGACTTCCTCGTCGACGTT 60.888 55.000 34.40 14.76 44.77 3.99
3098 3176 1.571919 GTTGCCGACGATGATAGCTT 58.428 50.000 0.00 0.00 0.00 3.74
3099 3177 2.545113 GGTTGCCGACGATGATAGCTTA 60.545 50.000 0.00 0.00 0.00 3.09
3100 3178 2.706555 TGCCGACGATGATAGCTTAG 57.293 50.000 0.00 0.00 0.00 2.18
3103 3181 3.175152 GCCGACGATGATAGCTTAGATG 58.825 50.000 0.00 0.00 0.00 2.90
3104 3182 3.175152 CCGACGATGATAGCTTAGATGC 58.825 50.000 0.00 0.00 0.00 3.91
3105 3183 3.175152 CGACGATGATAGCTTAGATGCC 58.825 50.000 0.00 0.00 0.00 4.40
3107 3185 4.095036 CGACGATGATAGCTTAGATGCCTA 59.905 45.833 0.00 0.00 0.00 3.93
3108 3186 5.574891 ACGATGATAGCTTAGATGCCTAG 57.425 43.478 0.00 0.00 0.00 3.02
3109 3187 5.257262 ACGATGATAGCTTAGATGCCTAGA 58.743 41.667 0.00 0.00 0.00 2.43
3110 3188 5.890985 ACGATGATAGCTTAGATGCCTAGAT 59.109 40.000 0.00 0.00 0.00 1.98
3111 3189 6.183360 ACGATGATAGCTTAGATGCCTAGATG 60.183 42.308 0.00 0.00 0.00 2.90
3140 3244 5.102953 TCAGAAATCTATGGTTCAGTGGG 57.897 43.478 0.00 0.00 0.00 4.61
3152 3293 2.281761 AGTGGGCTGCCGTTTCAG 60.282 61.111 13.40 0.00 37.15 3.02
3153 3294 3.365265 GTGGGCTGCCGTTTCAGG 61.365 66.667 13.40 0.00 34.74 3.86
3154 3295 3.565214 TGGGCTGCCGTTTCAGGA 61.565 61.111 13.40 0.00 34.74 3.86
3155 3296 2.044946 GGGCTGCCGTTTCAGGAT 60.045 61.111 13.40 0.00 34.74 3.24
3156 3297 2.409870 GGGCTGCCGTTTCAGGATG 61.410 63.158 13.40 0.00 34.74 3.51
3157 3298 2.409870 GGCTGCCGTTTCAGGATGG 61.410 63.158 1.35 0.00 36.16 3.51
3160 3301 4.002797 GCCGTTTCAGGATGGCTT 57.997 55.556 0.99 0.00 46.12 4.35
3161 3302 1.508088 GCCGTTTCAGGATGGCTTG 59.492 57.895 0.99 0.00 46.12 4.01
3162 3303 1.937546 GCCGTTTCAGGATGGCTTGG 61.938 60.000 0.99 0.00 46.12 3.61
3163 3304 0.322456 CCGTTTCAGGATGGCTTGGA 60.322 55.000 0.00 0.00 36.16 3.53
3164 3305 0.804989 CGTTTCAGGATGGCTTGGAC 59.195 55.000 0.00 0.00 36.16 4.02
3165 3306 1.611673 CGTTTCAGGATGGCTTGGACT 60.612 52.381 0.00 0.00 36.16 3.85
3166 3307 1.815003 GTTTCAGGATGGCTTGGACTG 59.185 52.381 0.00 0.00 36.16 3.51
3167 3308 1.361204 TTCAGGATGGCTTGGACTGA 58.639 50.000 0.00 0.00 36.49 3.41
3168 3309 1.588239 TCAGGATGGCTTGGACTGAT 58.412 50.000 0.00 0.00 36.16 2.90
3169 3310 1.211212 TCAGGATGGCTTGGACTGATG 59.789 52.381 0.00 0.00 36.16 3.07
3170 3311 0.549950 AGGATGGCTTGGACTGATGG 59.450 55.000 0.00 0.00 0.00 3.51
3171 3312 0.257039 GGATGGCTTGGACTGATGGT 59.743 55.000 0.00 0.00 0.00 3.55
3172 3313 1.386533 GATGGCTTGGACTGATGGTG 58.613 55.000 0.00 0.00 0.00 4.17
3173 3314 0.033796 ATGGCTTGGACTGATGGTGG 60.034 55.000 0.00 0.00 0.00 4.61
3174 3315 2.048603 GGCTTGGACTGATGGTGGC 61.049 63.158 0.00 0.00 0.00 5.01
3175 3316 1.303561 GCTTGGACTGATGGTGGCA 60.304 57.895 0.00 0.00 0.00 4.92
3176 3317 1.589716 GCTTGGACTGATGGTGGCAC 61.590 60.000 9.70 9.70 0.00 5.01
3177 3318 0.962356 CTTGGACTGATGGTGGCACC 60.962 60.000 29.75 29.75 39.22 5.01
3178 3319 1.426251 TTGGACTGATGGTGGCACCT 61.426 55.000 34.69 21.39 39.58 4.00
3179 3320 1.377725 GGACTGATGGTGGCACCTG 60.378 63.158 34.69 23.29 39.58 4.00
3180 3321 1.376466 GACTGATGGTGGCACCTGT 59.624 57.895 34.69 25.92 39.58 4.00
3181 3322 0.613260 GACTGATGGTGGCACCTGTA 59.387 55.000 34.69 17.68 39.58 2.74
3182 3323 1.210478 GACTGATGGTGGCACCTGTAT 59.790 52.381 34.69 21.65 39.58 2.29
3183 3324 1.065199 ACTGATGGTGGCACCTGTATG 60.065 52.381 34.69 22.35 39.58 2.39
3184 3325 0.255604 TGATGGTGGCACCTGTATGG 59.744 55.000 34.69 0.00 39.58 2.74
3218 3359 8.067751 AGTAGTAGAGATGCAACAAGAATACA 57.932 34.615 0.00 0.00 0.00 2.29
3242 3609 9.043548 ACAACTGTACTATGTAAATTACTCCCT 57.956 33.333 4.67 0.00 0.00 4.20
3243 3610 9.530633 CAACTGTACTATGTAAATTACTCCCTC 57.469 37.037 4.67 0.00 0.00 4.30
3244 3611 8.247666 ACTGTACTATGTAAATTACTCCCTCC 57.752 38.462 4.67 0.00 0.00 4.30
3245 3612 7.842743 ACTGTACTATGTAAATTACTCCCTCCA 59.157 37.037 4.67 0.00 0.00 3.86
3246 3613 8.792830 TGTACTATGTAAATTACTCCCTCCAT 57.207 34.615 4.67 0.00 0.00 3.41
3247 3614 9.220906 TGTACTATGTAAATTACTCCCTCCATT 57.779 33.333 4.67 0.00 0.00 3.16
3248 3615 9.708092 GTACTATGTAAATTACTCCCTCCATTC 57.292 37.037 4.67 0.00 0.00 2.67
3249 3616 8.568617 ACTATGTAAATTACTCCCTCCATTCT 57.431 34.615 4.67 0.00 0.00 2.40
3250 3617 9.670442 ACTATGTAAATTACTCCCTCCATTCTA 57.330 33.333 4.67 0.00 0.00 2.10
3260 3627 7.937700 ACTCCCTCCATTCTAAAATAGATGA 57.062 36.000 0.00 0.00 34.22 2.92
3261 3628 7.740805 ACTCCCTCCATTCTAAAATAGATGAC 58.259 38.462 0.00 0.00 34.22 3.06
3262 3629 7.570607 ACTCCCTCCATTCTAAAATAGATGACT 59.429 37.037 0.00 0.00 34.22 3.41
3263 3630 7.967908 TCCCTCCATTCTAAAATAGATGACTC 58.032 38.462 0.00 0.00 34.22 3.36
3264 3631 7.568738 TCCCTCCATTCTAAAATAGATGACTCA 59.431 37.037 0.00 0.00 34.22 3.41
3265 3632 8.213679 CCCTCCATTCTAAAATAGATGACTCAA 58.786 37.037 0.00 0.00 34.22 3.02
3266 3633 9.050601 CCTCCATTCTAAAATAGATGACTCAAC 57.949 37.037 0.00 0.00 34.22 3.18
3267 3634 9.829507 CTCCATTCTAAAATAGATGACTCAACT 57.170 33.333 0.00 0.00 34.22 3.16
3275 3642 8.918202 AAAATAGATGACTCAACTTTGTACCA 57.082 30.769 0.00 0.00 0.00 3.25
3276 3643 8.918202 AAATAGATGACTCAACTTTGTACCAA 57.082 30.769 0.00 0.00 0.00 3.67
3277 3644 7.907214 ATAGATGACTCAACTTTGTACCAAC 57.093 36.000 0.00 0.00 0.00 3.77
3278 3645 5.930135 AGATGACTCAACTTTGTACCAACT 58.070 37.500 0.00 0.00 0.00 3.16
3279 3646 6.357367 AGATGACTCAACTTTGTACCAACTT 58.643 36.000 0.00 0.00 0.00 2.66
3280 3647 6.828785 AGATGACTCAACTTTGTACCAACTTT 59.171 34.615 0.00 0.00 0.00 2.66
3281 3648 7.990886 AGATGACTCAACTTTGTACCAACTTTA 59.009 33.333 0.00 0.00 0.00 1.85
3282 3649 7.548196 TGACTCAACTTTGTACCAACTTTAG 57.452 36.000 0.00 0.00 0.00 1.85
3283 3650 7.107542 TGACTCAACTTTGTACCAACTTTAGT 58.892 34.615 0.00 0.00 0.00 2.24
3284 3651 8.259411 TGACTCAACTTTGTACCAACTTTAGTA 58.741 33.333 0.00 0.00 0.00 1.82
3285 3652 9.269453 GACTCAACTTTGTACCAACTTTAGTAT 57.731 33.333 0.00 0.00 0.00 2.12
3311 3678 8.970691 AAAATTGAGTCATCTATTTTGGAACG 57.029 30.769 11.47 0.00 44.08 3.95
3312 3679 6.683974 ATTGAGTCATCTATTTTGGAACGG 57.316 37.500 0.00 0.00 0.00 4.44
3313 3680 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
3314 3681 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
3315 3682 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
3316 3683 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
3317 3684 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
3318 3685 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
3319 3686 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
3320 3687 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
3321 3688 3.629142 ATTTTGGAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
3322 3689 2.314071 TTTGGAACGGAGGGAGTAGA 57.686 50.000 0.00 0.00 0.00 2.59
3331 3698 3.223435 CGGAGGGAGTAGATGCTTAGAA 58.777 50.000 0.00 0.00 0.00 2.10
3394 4856 2.123342 CAGAGCTGCGCTAATGTACTC 58.877 52.381 9.73 4.94 39.88 2.59
3516 5042 2.800629 CGGCGTTGGGATACGTCTTTAT 60.801 50.000 0.00 0.00 43.55 1.40
3520 5046 3.554324 CGTTGGGATACGTCTTTATGGTG 59.446 47.826 0.00 0.00 36.80 4.17
3543 5069 1.416813 CTCCGCGCAGATTCAGTCAC 61.417 60.000 8.75 0.00 0.00 3.67
3580 5106 1.033574 TGAAACCGCCGGTGAAAATT 58.966 45.000 18.79 0.00 35.34 1.82
3600 5126 4.133796 GCCGGCTTTGGTCATGGC 62.134 66.667 22.15 0.00 35.04 4.40
3604 5130 1.754234 GGCTTTGGTCATGGCGGAT 60.754 57.895 0.00 0.00 0.00 4.18
3645 5171 1.135373 CGTCGTTGTAGTCTGCCTCAT 60.135 52.381 0.00 0.00 0.00 2.90
3664 5190 3.288308 CTCGCTCGGGCTGTTCTGT 62.288 63.158 5.36 0.00 36.09 3.41
3726 5252 0.534203 GCCTTTGGTGTCGTTCTCCA 60.534 55.000 1.50 1.50 37.84 3.86
3729 5255 2.289694 CCTTTGGTGTCGTTCTCCATCT 60.290 50.000 5.40 0.00 39.11 2.90
3732 5258 0.179134 GGTGTCGTTCTCCATCTCCG 60.179 60.000 0.00 0.00 0.00 4.63
3733 5259 0.179134 GTGTCGTTCTCCATCTCCGG 60.179 60.000 0.00 0.00 0.00 5.14
3735 5261 1.035932 GTCGTTCTCCATCTCCGGGA 61.036 60.000 0.00 0.00 0.00 5.14
3744 5270 1.406887 CCATCTCCGGGACATCGTTTT 60.407 52.381 0.00 0.00 0.00 2.43
3748 5274 2.147958 CTCCGGGACATCGTTTTTGAA 58.852 47.619 0.00 0.00 0.00 2.69
3754 5280 3.816523 GGGACATCGTTTTTGAACAGGTA 59.183 43.478 0.00 0.00 0.00 3.08
3755 5281 4.457949 GGGACATCGTTTTTGAACAGGTAT 59.542 41.667 0.00 0.00 0.00 2.73
3757 5283 6.084277 GGACATCGTTTTTGAACAGGTATTC 58.916 40.000 0.00 0.00 0.00 1.75
3778 5304 1.463214 TGGAGGGGCCAAGAAGTGA 60.463 57.895 4.39 0.00 45.87 3.41
3781 5307 0.962855 GAGGGGCCAAGAAGTGAAGC 60.963 60.000 4.39 0.00 0.00 3.86
3824 5350 4.103103 CAGCGAGTCTCGACGGCA 62.103 66.667 26.11 0.00 43.74 5.69
3870 5396 2.741985 CGCGCAGGATGGTTGTGA 60.742 61.111 8.75 0.00 35.86 3.58
3877 5403 2.355513 GCAGGATGGTTGTGATGTCTCT 60.356 50.000 0.00 0.00 35.86 3.10
3881 5407 1.338107 TGGTTGTGATGTCTCTCCGT 58.662 50.000 0.00 0.00 0.00 4.69
3885 5411 0.038251 TGTGATGTCTCTCCGTGTGC 60.038 55.000 0.00 0.00 0.00 4.57
3900 5426 0.678950 TGTGCCACAACGAGATCTCA 59.321 50.000 22.31 0.00 0.00 3.27
3904 5430 2.200067 GCCACAACGAGATCTCATCTG 58.800 52.381 22.31 16.53 40.38 2.90
3990 5517 6.919775 ACCTAGTGACTTCTTGTAACATCT 57.080 37.500 0.00 0.00 32.29 2.90
4009 5536 1.818674 CTGCTTGATGTAAACCCCCAC 59.181 52.381 0.00 0.00 0.00 4.61
4019 5546 4.400120 TGTAAACCCCCACTTTGTACATC 58.600 43.478 0.00 0.00 0.00 3.06
4030 5559 6.980978 CCCACTTTGTACATCATCACTACTAG 59.019 42.308 0.00 0.00 0.00 2.57
4073 5604 6.068379 AGGAGTAGAGGTCTTCCCTATTGTAA 60.068 42.308 0.00 0.00 46.51 2.41
4077 5608 6.253946 AGAGGTCTTCCCTATTGTAATTGG 57.746 41.667 0.00 0.00 46.51 3.16
4080 5611 5.491078 AGGTCTTCCCTATTGTAATTGGTCA 59.509 40.000 4.77 0.00 43.87 4.02
4084 5615 8.244113 GTCTTCCCTATTGTAATTGGTCAAAAG 58.756 37.037 4.77 3.78 30.61 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 3.190874 CTCACGTAATCTTCTTGGGCTC 58.809 50.000 0.00 0.00 0.00 4.70
80 81 2.678190 GCTCACGTAATCTTCTTGGGCT 60.678 50.000 0.00 0.00 30.59 5.19
81 82 1.666189 GCTCACGTAATCTTCTTGGGC 59.334 52.381 0.00 0.00 0.00 5.36
82 83 3.190874 GAGCTCACGTAATCTTCTTGGG 58.809 50.000 9.40 0.00 0.00 4.12
83 84 2.854777 CGAGCTCACGTAATCTTCTTGG 59.145 50.000 15.40 0.00 0.00 3.61
84 85 3.502920 ACGAGCTCACGTAATCTTCTTG 58.497 45.455 15.40 0.00 44.72 3.02
85 86 3.440872 AGACGAGCTCACGTAATCTTCTT 59.559 43.478 15.40 0.00 46.52 2.52
86 87 3.011119 AGACGAGCTCACGTAATCTTCT 58.989 45.455 15.40 0.00 46.52 2.85
87 88 3.356145 GAGACGAGCTCACGTAATCTTC 58.644 50.000 15.40 0.00 46.52 2.87
99 100 1.460504 TCGTAATGGTGAGACGAGCT 58.539 50.000 0.00 0.00 40.45 4.09
107 108 5.292345 CGTCCAACAAATATCGTAATGGTGA 59.708 40.000 0.00 0.00 32.22 4.02
112 113 7.960738 CAGTTTTCGTCCAACAAATATCGTAAT 59.039 33.333 0.00 0.00 0.00 1.89
113 114 7.292292 CAGTTTTCGTCCAACAAATATCGTAA 58.708 34.615 0.00 0.00 0.00 3.18
123 124 1.134759 TCGTCCAGTTTTCGTCCAACA 60.135 47.619 0.00 0.00 0.00 3.33
138 139 1.571919 CAATGGATTCCTCGTCGTCC 58.428 55.000 3.95 0.00 0.00 4.79
147 148 2.051518 TGGCACGCCAATGGATTCC 61.052 57.895 8.67 0.00 44.12 3.01
157 158 1.791103 TTAGCAAACTGTGGCACGCC 61.791 55.000 13.77 0.00 38.60 5.68
172 173 1.466167 CAGCCGTCCATGCATATTAGC 59.534 52.381 0.00 0.00 0.00 3.09
173 174 2.079158 CCAGCCGTCCATGCATATTAG 58.921 52.381 0.00 0.00 0.00 1.73
174 175 1.881925 GCCAGCCGTCCATGCATATTA 60.882 52.381 0.00 0.00 0.00 0.98
175 176 1.174712 GCCAGCCGTCCATGCATATT 61.175 55.000 0.00 0.00 0.00 1.28
176 177 1.601759 GCCAGCCGTCCATGCATAT 60.602 57.895 0.00 0.00 0.00 1.78
177 178 2.203195 GCCAGCCGTCCATGCATA 60.203 61.111 0.00 0.00 0.00 3.14
178 179 3.650298 AAGCCAGCCGTCCATGCAT 62.650 57.895 0.00 0.00 0.00 3.96
179 180 4.349503 AAGCCAGCCGTCCATGCA 62.350 61.111 0.00 0.00 0.00 3.96
180 181 3.818787 CAAGCCAGCCGTCCATGC 61.819 66.667 0.00 0.00 0.00 4.06
181 182 1.033746 AATCAAGCCAGCCGTCCATG 61.034 55.000 0.00 0.00 0.00 3.66
182 183 0.546122 TAATCAAGCCAGCCGTCCAT 59.454 50.000 0.00 0.00 0.00 3.41
183 184 0.107703 CTAATCAAGCCAGCCGTCCA 60.108 55.000 0.00 0.00 0.00 4.02
184 185 1.440145 GCTAATCAAGCCAGCCGTCC 61.440 60.000 0.00 0.00 46.25 4.79
185 186 2.017752 GCTAATCAAGCCAGCCGTC 58.982 57.895 0.00 0.00 46.25 4.79
186 187 4.225497 GCTAATCAAGCCAGCCGT 57.775 55.556 0.00 0.00 46.25 5.68
202 203 0.179240 CGATTCTTGCACGACACTGC 60.179 55.000 0.00 0.00 37.70 4.40
203 204 0.439985 CCGATTCTTGCACGACACTG 59.560 55.000 0.00 0.00 0.00 3.66
204 205 1.291877 GCCGATTCTTGCACGACACT 61.292 55.000 0.00 0.00 0.00 3.55
205 206 1.132640 GCCGATTCTTGCACGACAC 59.867 57.895 0.00 0.00 0.00 3.67
219 220 1.192146 GCTATGTAGATGGGGGCCGA 61.192 60.000 0.00 0.00 0.00 5.54
225 226 0.319728 AGCGCTGCTATGTAGATGGG 59.680 55.000 10.39 0.00 36.99 4.00
252 260 0.952280 GGAGGAGACGACATGCGATA 59.048 55.000 14.88 0.00 44.57 2.92
1029 1045 3.029570 GTCGGGGTACTGGTAGAAGAAT 58.970 50.000 0.00 0.00 0.00 2.40
1251 1312 2.867472 CCGCCGAACAACATGTCC 59.133 61.111 0.00 0.00 0.00 4.02
1434 1495 2.452813 CGCCGGACCATTCAAGACG 61.453 63.158 5.05 0.00 0.00 4.18
1446 1507 4.056584 TCCTTCTCCTCCGCCGGA 62.057 66.667 5.05 5.37 0.00 5.14
1480 1541 1.501741 CAGCGGAAAACATCACCGG 59.498 57.895 0.00 0.00 45.66 5.28
1482 1543 1.212751 GCCAGCGGAAAACATCACC 59.787 57.895 0.00 0.00 0.00 4.02
1483 1544 1.154225 CGCCAGCGGAAAACATCAC 60.154 57.895 3.61 0.00 35.56 3.06
1484 1545 1.302112 TCGCCAGCGGAAAACATCA 60.302 52.632 12.71 0.00 40.25 3.07
1929 2004 1.079750 GACCGCCTCGCTCTTCTTT 60.080 57.895 0.00 0.00 0.00 2.52
2023 2098 1.703438 GAGTGCTGCTTGATCTGCCG 61.703 60.000 0.00 4.20 0.00 5.69
2361 2436 2.060980 GCCCGTGATCCTCACCTCT 61.061 63.158 1.90 0.00 44.20 3.69
3018 3093 3.487211 AGCAGCCACTGGTGATCA 58.513 55.556 1.93 0.00 40.87 2.92
3098 3176 6.368805 TCTGAAAGACTCATCTAGGCATCTA 58.631 40.000 0.00 0.00 38.67 1.98
3099 3177 5.207354 TCTGAAAGACTCATCTAGGCATCT 58.793 41.667 0.00 0.00 38.67 2.90
3100 3178 5.528043 TCTGAAAGACTCATCTAGGCATC 57.472 43.478 0.00 0.00 38.67 3.91
3140 3244 3.056313 GCCATCCTGAAACGGCAGC 62.056 63.158 0.00 0.00 44.25 5.25
3152 3293 0.257039 ACCATCAGTCCAAGCCATCC 59.743 55.000 0.00 0.00 0.00 3.51
3153 3294 1.386533 CACCATCAGTCCAAGCCATC 58.613 55.000 0.00 0.00 0.00 3.51
3154 3295 0.033796 CCACCATCAGTCCAAGCCAT 60.034 55.000 0.00 0.00 0.00 4.40
3155 3296 1.379916 CCACCATCAGTCCAAGCCA 59.620 57.895 0.00 0.00 0.00 4.75
3156 3297 2.048603 GCCACCATCAGTCCAAGCC 61.049 63.158 0.00 0.00 0.00 4.35
3157 3298 1.303561 TGCCACCATCAGTCCAAGC 60.304 57.895 0.00 0.00 0.00 4.01
3158 3299 0.962356 GGTGCCACCATCAGTCCAAG 60.962 60.000 9.55 0.00 38.42 3.61
3159 3300 1.074775 GGTGCCACCATCAGTCCAA 59.925 57.895 9.55 0.00 38.42 3.53
3160 3301 1.847506 AGGTGCCACCATCAGTCCA 60.848 57.895 17.80 0.00 41.95 4.02
3161 3302 1.377725 CAGGTGCCACCATCAGTCC 60.378 63.158 17.80 0.00 41.95 3.85
3162 3303 0.613260 TACAGGTGCCACCATCAGTC 59.387 55.000 17.80 0.00 41.95 3.51
3163 3304 1.065199 CATACAGGTGCCACCATCAGT 60.065 52.381 17.80 11.14 41.95 3.41
3164 3305 1.671979 CATACAGGTGCCACCATCAG 58.328 55.000 17.80 5.39 41.95 2.90
3165 3306 0.255604 CCATACAGGTGCCACCATCA 59.744 55.000 17.80 0.00 41.95 3.07
3166 3307 3.100545 CCATACAGGTGCCACCATC 57.899 57.895 17.80 0.00 41.95 3.51
3181 3322 9.368416 TGCATCTCTACTACTTATTTCTACCAT 57.632 33.333 0.00 0.00 0.00 3.55
3182 3323 8.762481 TGCATCTCTACTACTTATTTCTACCA 57.238 34.615 0.00 0.00 0.00 3.25
3183 3324 9.465985 GTTGCATCTCTACTACTTATTTCTACC 57.534 37.037 0.00 0.00 0.00 3.18
3186 3327 9.593134 CTTGTTGCATCTCTACTACTTATTTCT 57.407 33.333 0.00 0.00 0.00 2.52
3187 3328 9.587772 TCTTGTTGCATCTCTACTACTTATTTC 57.412 33.333 0.00 0.00 0.00 2.17
3188 3329 9.944376 TTCTTGTTGCATCTCTACTACTTATTT 57.056 29.630 0.00 0.00 0.00 1.40
3192 3333 8.531982 TGTATTCTTGTTGCATCTCTACTACTT 58.468 33.333 0.00 0.00 0.00 2.24
3193 3334 8.067751 TGTATTCTTGTTGCATCTCTACTACT 57.932 34.615 0.00 0.00 0.00 2.57
3194 3335 8.596380 GTTGTATTCTTGTTGCATCTCTACTAC 58.404 37.037 0.00 0.00 0.00 2.73
3195 3336 8.531982 AGTTGTATTCTTGTTGCATCTCTACTA 58.468 33.333 0.00 0.00 0.00 1.82
3218 3359 8.702819 GGAGGGAGTAATTTACATAGTACAGTT 58.297 37.037 9.15 0.00 0.00 3.16
3237 3604 7.972301 AGTCATCTATTTTAGAATGGAGGGAG 58.028 38.462 4.57 0.00 36.39 4.30
3238 3605 7.568738 TGAGTCATCTATTTTAGAATGGAGGGA 59.431 37.037 4.57 0.04 36.39 4.20
3239 3606 7.739825 TGAGTCATCTATTTTAGAATGGAGGG 58.260 38.462 4.57 0.00 36.39 4.30
3240 3607 9.050601 GTTGAGTCATCTATTTTAGAATGGAGG 57.949 37.037 0.00 0.00 36.39 4.30
3250 3617 8.918202 TGGTACAAAGTTGAGTCATCTATTTT 57.082 30.769 4.14 0.00 31.92 1.82
3286 3653 8.028938 CCGTTCCAAAATAGATGACTCAATTTT 58.971 33.333 0.00 0.00 33.07 1.82
3287 3654 7.393234 TCCGTTCCAAAATAGATGACTCAATTT 59.607 33.333 0.00 0.00 0.00 1.82
3288 3655 6.884295 TCCGTTCCAAAATAGATGACTCAATT 59.116 34.615 0.00 0.00 0.00 2.32
3289 3656 6.414732 TCCGTTCCAAAATAGATGACTCAAT 58.585 36.000 0.00 0.00 0.00 2.57
3290 3657 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
3291 3658 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
3292 3659 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
3293 3660 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
3294 3661 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
3295 3662 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
3296 3663 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
3297 3664 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
3298 3665 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
3299 3666 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
3300 3667 4.355549 TCTACTCCCTCCGTTCCAAAATA 58.644 43.478 0.00 0.00 0.00 1.40
3301 3668 3.178865 TCTACTCCCTCCGTTCCAAAAT 58.821 45.455 0.00 0.00 0.00 1.82
3302 3669 2.612000 TCTACTCCCTCCGTTCCAAAA 58.388 47.619 0.00 0.00 0.00 2.44
3303 3670 2.314071 TCTACTCCCTCCGTTCCAAA 57.686 50.000 0.00 0.00 0.00 3.28
3304 3671 2.108168 CATCTACTCCCTCCGTTCCAA 58.892 52.381 0.00 0.00 0.00 3.53
3305 3672 1.776662 CATCTACTCCCTCCGTTCCA 58.223 55.000 0.00 0.00 0.00 3.53
3306 3673 0.389757 GCATCTACTCCCTCCGTTCC 59.610 60.000 0.00 0.00 0.00 3.62
3307 3674 1.404843 AGCATCTACTCCCTCCGTTC 58.595 55.000 0.00 0.00 0.00 3.95
3308 3675 1.867363 AAGCATCTACTCCCTCCGTT 58.133 50.000 0.00 0.00 0.00 4.44
3309 3676 2.175069 TCTAAGCATCTACTCCCTCCGT 59.825 50.000 0.00 0.00 0.00 4.69
3310 3677 2.865079 TCTAAGCATCTACTCCCTCCG 58.135 52.381 0.00 0.00 0.00 4.63
3311 3678 5.546526 CATTTCTAAGCATCTACTCCCTCC 58.453 45.833 0.00 0.00 0.00 4.30
3312 3679 4.994217 GCATTTCTAAGCATCTACTCCCTC 59.006 45.833 0.00 0.00 0.00 4.30
3313 3680 4.410228 TGCATTTCTAAGCATCTACTCCCT 59.590 41.667 0.00 0.00 35.51 4.20
3314 3681 4.708177 TGCATTTCTAAGCATCTACTCCC 58.292 43.478 0.00 0.00 35.51 4.30
3331 3698 9.647797 CATATGCCTAAACAAATCATATGCATT 57.352 29.630 3.54 0.00 39.62 3.56
3340 3708 9.463443 GTCCATAAACATATGCCTAAACAAATC 57.537 33.333 1.58 0.00 0.00 2.17
3394 4856 4.141733 ACAAAACCAGGGTTCTTCATTTGG 60.142 41.667 3.82 0.00 37.35 3.28
3500 4965 3.537580 GCACCATAAAGACGTATCCCAA 58.462 45.455 0.00 0.00 0.00 4.12
3501 4966 2.482316 CGCACCATAAAGACGTATCCCA 60.482 50.000 0.00 0.00 0.00 4.37
3561 5087 1.033574 AATTTTCACCGGCGGTTTCA 58.966 45.000 32.12 13.89 31.02 2.69
3587 5113 1.031571 TCATCCGCCATGACCAAAGC 61.032 55.000 0.00 0.00 36.51 3.51
3600 5126 4.592192 AGACGCCGCCATCATCCG 62.592 66.667 0.00 0.00 0.00 4.18
3604 5130 2.745884 CCAAAGACGCCGCCATCA 60.746 61.111 0.00 0.00 0.00 3.07
3645 5171 2.676822 AGAACAGCCCGAGCGAGA 60.677 61.111 0.00 0.00 46.67 4.04
3703 5229 1.838568 GAACGACACCAAAGGCGTCC 61.839 60.000 0.00 0.00 35.74 4.79
3726 5252 2.027561 TCAAAAACGATGTCCCGGAGAT 60.028 45.455 0.73 0.00 0.00 2.75
3729 5255 1.874872 GTTCAAAAACGATGTCCCGGA 59.125 47.619 0.73 0.00 0.00 5.14
3732 5258 2.621526 ACCTGTTCAAAAACGATGTCCC 59.378 45.455 0.00 0.00 38.28 4.46
3733 5259 3.982576 ACCTGTTCAAAAACGATGTCC 57.017 42.857 0.00 0.00 38.28 4.02
3735 5261 5.685841 CGAATACCTGTTCAAAAACGATGT 58.314 37.500 0.00 0.00 38.28 3.06
3744 5270 2.354704 CCTCCAGCGAATACCTGTTCAA 60.355 50.000 0.00 0.00 0.00 2.69
3748 5274 1.338136 CCCCTCCAGCGAATACCTGT 61.338 60.000 0.00 0.00 0.00 4.00
3802 5328 3.800863 TCGAGACTCGCTGCCGTC 61.801 66.667 20.11 8.24 40.21 4.79
3812 5338 3.381983 TGCCATGCCGTCGAGACT 61.382 61.111 0.00 0.00 0.00 3.24
3821 5347 0.527565 AGATTTCGTTGTGCCATGCC 59.472 50.000 0.00 0.00 0.00 4.40
3824 5350 3.758023 TCATTGAGATTTCGTTGTGCCAT 59.242 39.130 0.00 0.00 0.00 4.40
3836 5362 0.940126 GCGCGTCCATCATTGAGATT 59.060 50.000 8.43 0.00 33.72 2.40
3870 5396 3.791640 TGGCACACGGAGAGACAT 58.208 55.556 0.00 0.00 0.00 3.06
3881 5407 0.678950 TGAGATCTCGTTGTGGCACA 59.321 50.000 17.96 17.96 0.00 4.57
3885 5411 3.790152 TCAGATGAGATCTCGTTGTGG 57.210 47.619 18.45 8.82 37.58 4.17
3900 5426 3.752665 GATGACATGCCATCCTTCAGAT 58.247 45.455 10.67 0.00 37.54 2.90
3966 5493 7.577046 GCAGATGTTACAAGAAGTCACTAGGTA 60.577 40.741 0.00 0.00 0.00 3.08
3967 5494 6.692486 CAGATGTTACAAGAAGTCACTAGGT 58.308 40.000 0.00 0.00 0.00 3.08
3969 5496 6.393990 AGCAGATGTTACAAGAAGTCACTAG 58.606 40.000 0.00 0.00 0.00 2.57
3970 5497 6.346477 AGCAGATGTTACAAGAAGTCACTA 57.654 37.500 0.00 0.00 0.00 2.74
3971 5498 5.220710 AGCAGATGTTACAAGAAGTCACT 57.779 39.130 0.00 0.00 0.00 3.41
3972 5499 5.466728 TCAAGCAGATGTTACAAGAAGTCAC 59.533 40.000 0.00 0.00 0.00 3.67
3973 5500 5.610398 TCAAGCAGATGTTACAAGAAGTCA 58.390 37.500 0.00 0.00 0.00 3.41
3974 5501 6.734104 ATCAAGCAGATGTTACAAGAAGTC 57.266 37.500 0.00 0.00 35.06 3.01
3990 5517 1.427368 AGTGGGGGTTTACATCAAGCA 59.573 47.619 0.00 0.00 0.00 3.91
3999 5526 4.726035 TGATGTACAAAGTGGGGGTTTA 57.274 40.909 0.00 0.00 0.00 2.01
4003 5530 3.016736 GTGATGATGTACAAAGTGGGGG 58.983 50.000 0.00 0.00 0.00 5.40
4060 5591 8.348285 TCTTTTGACCAATTACAATAGGGAAG 57.652 34.615 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.