Multiple sequence alignment - TraesCS7D01G173400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G173400 chr7D 100.000 2975 0 0 1 2975 125886805 125889779 0.000000e+00 5494.0
1 TraesCS7D01G173400 chr7D 94.045 1545 52 19 687 2214 125908692 125910213 0.000000e+00 2307.0
2 TraesCS7D01G173400 chr7D 100.000 412 0 0 1 412 125879898 125880309 0.000000e+00 761.0
3 TraesCS7D01G173400 chr7D 81.818 77 13 1 184 260 623698150 623698075 2.480000e-06 63.9
4 TraesCS7D01G173400 chr7D 88.462 52 5 1 187 237 161142748 161142697 8.900000e-06 62.1
5 TraesCS7D01G173400 chr7D 100.000 33 0 0 2286 2318 404965381 404965413 8.900000e-06 62.1
6 TraesCS7D01G173400 chr7B 89.420 2259 141 49 21 2214 87124804 87127029 0.000000e+00 2758.0
7 TraesCS7D01G173400 chr7B 96.000 50 1 1 2229 2278 87127015 87127063 2.460000e-11 80.5
8 TraesCS7D01G173400 chr7B 88.889 54 4 2 184 237 613439840 613439891 6.880000e-07 65.8
9 TraesCS7D01G173400 chr7B 91.892 37 3 0 2285 2321 74282126 74282090 5.000000e-03 52.8
10 TraesCS7D01G173400 chr7A 92.332 1578 60 33 654 2212 127370742 127372277 0.000000e+00 2187.0
11 TraesCS7D01G173400 chr7A 86.464 362 32 5 261 605 127370289 127370650 6.020000e-102 381.0
12 TraesCS7D01G173400 chr7A 74.125 514 99 24 1046 1536 127347930 127348432 6.550000e-42 182.0
13 TraesCS7D01G173400 chr7A 84.375 64 8 2 186 248 286119019 286119081 8.900000e-06 62.1
14 TraesCS7D01G173400 chr2D 85.612 417 44 7 2285 2699 599441709 599442111 9.860000e-115 424.0
15 TraesCS7D01G173400 chr2D 85.507 69 10 0 192 260 23335527 23335459 4.110000e-09 73.1
16 TraesCS7D01G173400 chr2D 84.416 77 6 4 1174 1247 88088470 88088543 1.480000e-08 71.3
17 TraesCS7D01G173400 chr2A 85.612 417 43 8 2285 2699 733414907 733415308 3.550000e-114 422.0
18 TraesCS7D01G173400 chr2A 97.368 38 1 0 2281 2318 588982338 588982375 6.880000e-07 65.8
19 TraesCS7D01G173400 chr5A 80.442 317 48 12 1107 1413 457511684 457511996 2.310000e-56 230.0
20 TraesCS7D01G173400 chr5A 78.827 307 53 9 1109 1406 457380435 457380738 2.340000e-46 196.0
21 TraesCS7D01G173400 chr5A 76.486 387 67 18 1020 1391 457516823 457516446 3.910000e-44 189.0
22 TraesCS7D01G173400 chr5A 89.623 106 11 0 1851 1956 564945609 564945714 5.170000e-28 135.0
23 TraesCS7D01G173400 chr5A 75.312 320 47 25 1108 1400 457718211 457718525 1.120000e-24 124.0
24 TraesCS7D01G173400 chr5D 78.729 362 57 16 1064 1412 355797755 355797401 1.070000e-54 224.0
25 TraesCS7D01G173400 chr5D 75.375 333 50 23 1108 1413 355461860 355461533 6.690000e-27 132.0
26 TraesCS7D01G173400 chr5D 83.784 74 12 0 2803 2876 179648294 179648367 1.480000e-08 71.3
27 TraesCS7D01G173400 chr5D 94.872 39 1 1 2286 2324 179922260 179922297 3.200000e-05 60.2
28 TraesCS7D01G173400 chr5B 79.167 288 50 8 1127 1406 419947818 419948103 1.090000e-44 191.0
29 TraesCS7D01G173400 chr5B 77.663 291 49 12 1112 1391 420714331 420714616 2.370000e-36 163.0
30 TraesCS7D01G173400 chr5B 75.075 333 51 23 1108 1413 420182121 420181794 3.110000e-25 126.0
31 TraesCS7D01G173400 chr5B 83.582 67 11 0 2286 2352 26452566 26452500 2.480000e-06 63.9
32 TraesCS7D01G173400 chr5B 97.297 37 0 1 2282 2317 174587433 174587469 8.900000e-06 62.1
33 TraesCS7D01G173400 chr3A 87.356 87 6 5 176 259 742266549 742266633 8.780000e-16 95.3
34 TraesCS7D01G173400 chr2B 90.000 70 7 0 192 261 171098793 171098724 1.140000e-14 91.6
35 TraesCS7D01G173400 chr4A 100.000 33 0 0 2285 2317 113936118 113936150 8.900000e-06 62.1
36 TraesCS7D01G173400 chr6B 86.538 52 6 1 187 237 200906721 200906772 4.140000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G173400 chr7D 125886805 125889779 2974 False 5494.00 5494 100.000 1 2975 1 chr7D.!!$F2 2974
1 TraesCS7D01G173400 chr7D 125908692 125910213 1521 False 2307.00 2307 94.045 687 2214 1 chr7D.!!$F3 1527
2 TraesCS7D01G173400 chr7B 87124804 87127063 2259 False 1419.25 2758 92.710 21 2278 2 chr7B.!!$F2 2257
3 TraesCS7D01G173400 chr7A 127370289 127372277 1988 False 1284.00 2187 89.398 261 2212 2 chr7A.!!$F3 1951

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
426 446 0.179105 TGTACGTCTGCACCGTGTTT 60.179 50.0 15.02 0.0 39.22 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2290 2448 0.110419 GCAACGCACGAGCATTTGTA 60.11 50.0 14.66 0.0 42.27 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.584638 TCCTTGGTAGTAATTGTGGCAT 57.415 40.909 0.00 0.00 0.00 4.40
35 36 6.903883 AGTAATTGTGGCATAAGTAACGAG 57.096 37.500 5.72 0.00 0.00 4.18
69 70 3.415212 TGAGGACCTCTTTGATTTGCAG 58.585 45.455 22.14 0.00 0.00 4.41
74 75 2.901839 ACCTCTTTGATTTGCAGGCATT 59.098 40.909 0.00 0.00 0.00 3.56
76 77 4.202388 ACCTCTTTGATTTGCAGGCATTTT 60.202 37.500 0.00 0.00 0.00 1.82
86 87 7.333921 TGATTTGCAGGCATTTTAAAATGTAGG 59.666 33.333 31.43 23.46 45.77 3.18
92 93 7.653311 GCAGGCATTTTAAAATGTAGGAATAGG 59.347 37.037 31.43 16.92 45.77 2.57
93 94 8.143835 CAGGCATTTTAAAATGTAGGAATAGGG 58.856 37.037 31.43 10.98 45.77 3.53
94 95 7.290014 AGGCATTTTAAAATGTAGGAATAGGGG 59.710 37.037 31.43 10.81 45.77 4.79
158 159 6.715347 ATAGCAAACCCCATGAATTTAGAC 57.285 37.500 0.00 0.00 0.00 2.59
168 169 8.322091 ACCCCATGAATTTAGACTATATAGTGC 58.678 37.037 20.13 11.24 36.50 4.40
179 199 5.305386 AGACTATATAGTGCTTGATGCCACA 59.695 40.000 20.13 0.00 42.00 4.17
196 216 2.159393 CCACATGCGGTTTGATGGTTAG 60.159 50.000 0.00 0.00 0.00 2.34
197 217 2.091541 ACATGCGGTTTGATGGTTAGG 58.908 47.619 0.00 0.00 0.00 2.69
202 222 2.629051 CGGTTTGATGGTTAGGAGGAC 58.371 52.381 0.00 0.00 0.00 3.85
217 237 3.272551 AGGAGGACAGTGGTATCCTTAGT 59.727 47.826 2.50 0.00 45.74 2.24
222 242 5.103215 AGGACAGTGGTATCCTTAGTCCATA 60.103 44.000 18.25 0.00 43.09 2.74
223 243 5.780793 GGACAGTGGTATCCTTAGTCCATAT 59.219 44.000 0.00 0.00 42.65 1.78
229 249 7.569111 AGTGGTATCCTTAGTCCATATGAGTTT 59.431 37.037 3.65 0.00 32.45 2.66
232 252 9.930693 GGTATCCTTAGTCCATATGAGTTTAAG 57.069 37.037 3.65 6.75 0.00 1.85
255 275 6.166982 AGTCCTAAACTTGACATTAGTGCTC 58.833 40.000 0.00 0.00 33.03 4.26
272 292 1.828832 CTCGCATAGACGTTCTGGTC 58.171 55.000 0.00 0.00 37.19 4.02
293 313 3.069016 TCGATTATGAAGGCGTATGTGGT 59.931 43.478 0.00 0.00 0.00 4.16
294 314 3.807622 CGATTATGAAGGCGTATGTGGTT 59.192 43.478 0.00 0.00 0.00 3.67
322 342 8.578448 TTCATCAATTTGAAGATGATGTACCA 57.422 30.769 16.59 1.85 47.00 3.25
348 368 3.146066 AGTCTCTCGGAGATGCTCATAC 58.854 50.000 8.39 0.00 40.98 2.39
350 370 2.147150 CTCTCGGAGATGCTCATACGA 58.853 52.381 8.39 0.00 33.89 3.43
351 371 2.147150 TCTCGGAGATGCTCATACGAG 58.853 52.381 17.39 17.39 46.41 4.18
382 402 0.462375 TGCGTGCGTGTATAGGGATT 59.538 50.000 0.00 0.00 0.00 3.01
426 446 0.179105 TGTACGTCTGCACCGTGTTT 60.179 50.000 15.02 0.00 39.22 2.83
631 729 0.896226 GTCTTCTAGAAGGCACGGGT 59.104 55.000 28.19 0.00 42.31 5.28
641 739 2.613506 GGCACGGGTCCAGTTTTCG 61.614 63.158 0.00 0.00 0.00 3.46
646 744 1.500512 CGGGTCCAGTTTTCGCGAAA 61.501 55.000 29.22 29.22 39.25 3.46
647 745 0.664224 GGGTCCAGTTTTCGCGAAAA 59.336 50.000 35.98 35.98 37.90 2.29
696 795 2.633488 GAGGGCTACGCTGAAAAAGAT 58.367 47.619 0.00 0.00 0.00 2.40
868 989 1.496060 TATCTGGCATCCACCGTTCT 58.504 50.000 0.00 0.00 0.00 3.01
881 1002 0.602905 CCGTTCTTCCACCACTCCAC 60.603 60.000 0.00 0.00 0.00 4.02
888 1009 3.767673 TCTTCCACCACTCCACTACATAC 59.232 47.826 0.00 0.00 0.00 2.39
956 1077 1.516603 GAGCTAGCCCACGAACGAC 60.517 63.158 12.13 0.00 0.00 4.34
1033 1154 3.063084 GCTCGGACGAGGAGGTGT 61.063 66.667 21.57 0.00 42.19 4.16
1980 2116 2.821366 CTCCGCAAATGAGCCGCT 60.821 61.111 0.00 0.00 0.00 5.52
1981 2117 2.359850 TCCGCAAATGAGCCGCTT 60.360 55.556 0.00 0.00 0.00 4.68
1982 2118 2.100991 CCGCAAATGAGCCGCTTC 59.899 61.111 0.00 0.00 0.00 3.86
2208 2366 7.223387 GCTCAACTTGTTGTTTCAATCATCTTT 59.777 33.333 12.44 0.00 36.63 2.52
2209 2367 8.633075 TCAACTTGTTGTTTCAATCATCTTTC 57.367 30.769 12.44 0.00 36.63 2.62
2210 2368 7.706179 TCAACTTGTTGTTTCAATCATCTTTCC 59.294 33.333 12.44 0.00 36.63 3.13
2211 2369 7.352079 ACTTGTTGTTTCAATCATCTTTCCT 57.648 32.000 0.00 0.00 0.00 3.36
2212 2370 7.205297 ACTTGTTGTTTCAATCATCTTTCCTG 58.795 34.615 0.00 0.00 0.00 3.86
2213 2371 6.713762 TGTTGTTTCAATCATCTTTCCTGT 57.286 33.333 0.00 0.00 0.00 4.00
2214 2372 6.738114 TGTTGTTTCAATCATCTTTCCTGTC 58.262 36.000 0.00 0.00 0.00 3.51
2215 2373 5.611796 TGTTTCAATCATCTTTCCTGTCG 57.388 39.130 0.00 0.00 0.00 4.35
2216 2374 4.455533 TGTTTCAATCATCTTTCCTGTCGG 59.544 41.667 0.00 0.00 0.00 4.79
2217 2375 3.981071 TCAATCATCTTTCCTGTCGGT 57.019 42.857 0.00 0.00 0.00 4.69
2218 2376 4.286297 TCAATCATCTTTCCTGTCGGTT 57.714 40.909 0.00 0.00 0.00 4.44
2219 2377 4.253685 TCAATCATCTTTCCTGTCGGTTC 58.746 43.478 0.00 0.00 0.00 3.62
2220 2378 3.981071 ATCATCTTTCCTGTCGGTTCA 57.019 42.857 0.00 0.00 0.00 3.18
2221 2379 3.762407 TCATCTTTCCTGTCGGTTCAA 57.238 42.857 0.00 0.00 0.00 2.69
2222 2380 4.079980 TCATCTTTCCTGTCGGTTCAAA 57.920 40.909 0.00 0.00 0.00 2.69
2223 2381 4.456535 TCATCTTTCCTGTCGGTTCAAAA 58.543 39.130 0.00 0.00 0.00 2.44
2224 2382 4.884744 TCATCTTTCCTGTCGGTTCAAAAA 59.115 37.500 0.00 0.00 0.00 1.94
2263 2421 2.369394 AGAGGCCGAAAGCAATAAAGG 58.631 47.619 0.00 0.00 46.50 3.11
2271 2429 5.768317 CCGAAAGCAATAAAGGTCTTTCAA 58.232 37.500 12.24 0.00 42.53 2.69
2302 2460 9.865321 TTTAATTCTACTAGTACAAATGCTCGT 57.135 29.630 0.00 0.00 0.00 4.18
2303 2461 7.757097 AATTCTACTAGTACAAATGCTCGTG 57.243 36.000 0.00 0.00 0.00 4.35
2304 2462 4.669318 TCTACTAGTACAAATGCTCGTGC 58.331 43.478 1.71 1.71 40.20 5.34
2305 2463 2.259618 ACTAGTACAAATGCTCGTGCG 58.740 47.619 4.84 0.00 43.34 5.34
2306 2464 2.259618 CTAGTACAAATGCTCGTGCGT 58.740 47.619 4.84 0.99 43.34 5.24
2308 2466 1.194547 AGTACAAATGCTCGTGCGTTG 59.805 47.619 16.88 17.84 46.57 4.10
2309 2467 0.110419 TACAAATGCTCGTGCGTTGC 60.110 50.000 16.88 5.71 46.57 4.17
2310 2468 1.370293 CAAATGCTCGTGCGTTGCA 60.370 52.632 16.88 14.15 46.57 4.08
2311 2469 0.933973 CAAATGCTCGTGCGTTGCAA 60.934 50.000 16.88 0.00 46.57 4.08
2312 2470 0.934436 AAATGCTCGTGCGTTGCAAC 60.934 50.000 19.89 19.89 46.57 4.17
2325 2483 3.961729 GCAACGGGCGTAGAAACT 58.038 55.556 0.00 0.00 0.00 2.66
2326 2484 1.785951 GCAACGGGCGTAGAAACTC 59.214 57.895 0.00 0.00 0.00 3.01
2327 2485 0.947180 GCAACGGGCGTAGAAACTCA 60.947 55.000 0.00 0.00 0.00 3.41
2328 2486 1.722011 CAACGGGCGTAGAAACTCAT 58.278 50.000 0.00 0.00 0.00 2.90
2329 2487 2.883574 CAACGGGCGTAGAAACTCATA 58.116 47.619 0.00 0.00 0.00 2.15
2330 2488 3.255725 CAACGGGCGTAGAAACTCATAA 58.744 45.455 0.00 0.00 0.00 1.90
2331 2489 3.160777 ACGGGCGTAGAAACTCATAAG 57.839 47.619 0.00 0.00 0.00 1.73
2332 2490 2.756760 ACGGGCGTAGAAACTCATAAGA 59.243 45.455 0.00 0.00 0.00 2.10
2333 2491 3.114065 CGGGCGTAGAAACTCATAAGAC 58.886 50.000 0.00 0.00 0.00 3.01
2334 2492 3.428452 CGGGCGTAGAAACTCATAAGACA 60.428 47.826 0.00 0.00 0.00 3.41
2335 2493 4.694339 GGGCGTAGAAACTCATAAGACAT 58.306 43.478 0.00 0.00 0.00 3.06
2336 2494 4.508124 GGGCGTAGAAACTCATAAGACATG 59.492 45.833 0.00 0.00 0.00 3.21
2337 2495 5.348986 GGCGTAGAAACTCATAAGACATGA 58.651 41.667 0.00 0.00 0.00 3.07
2338 2496 5.986135 GGCGTAGAAACTCATAAGACATGAT 59.014 40.000 0.00 0.00 0.00 2.45
2339 2497 6.480320 GGCGTAGAAACTCATAAGACATGATT 59.520 38.462 0.00 0.00 0.00 2.57
2340 2498 7.306866 GGCGTAGAAACTCATAAGACATGATTC 60.307 40.741 0.00 0.00 0.00 2.52
2341 2499 7.222805 GCGTAGAAACTCATAAGACATGATTCA 59.777 37.037 0.00 0.00 0.00 2.57
2342 2500 9.254133 CGTAGAAACTCATAAGACATGATTCAT 57.746 33.333 0.00 0.00 0.00 2.57
2355 2513 5.134202 CATGATTCATGTGCCATTATGCT 57.866 39.130 16.93 0.00 37.12 3.79
2356 2514 4.841443 TGATTCATGTGCCATTATGCTC 57.159 40.909 0.00 0.00 0.00 4.26
2357 2515 3.570975 TGATTCATGTGCCATTATGCTCC 59.429 43.478 0.00 0.00 0.00 4.70
2358 2516 2.732844 TCATGTGCCATTATGCTCCA 57.267 45.000 0.00 0.00 0.00 3.86
2359 2517 3.015675 TCATGTGCCATTATGCTCCAA 57.984 42.857 0.00 0.00 0.00 3.53
2360 2518 3.568443 TCATGTGCCATTATGCTCCAAT 58.432 40.909 0.00 0.00 0.00 3.16
2361 2519 4.727677 TCATGTGCCATTATGCTCCAATA 58.272 39.130 0.00 0.00 0.00 1.90
2362 2520 5.139001 TCATGTGCCATTATGCTCCAATAA 58.861 37.500 0.00 0.00 0.00 1.40
2363 2521 4.916983 TGTGCCATTATGCTCCAATAAC 57.083 40.909 0.00 0.00 0.00 1.89
2364 2522 4.276642 TGTGCCATTATGCTCCAATAACA 58.723 39.130 0.00 0.00 0.00 2.41
2365 2523 4.097741 TGTGCCATTATGCTCCAATAACAC 59.902 41.667 0.00 0.00 0.00 3.32
2366 2524 3.314913 TGCCATTATGCTCCAATAACACG 59.685 43.478 0.00 0.00 0.00 4.49
2367 2525 3.563808 GCCATTATGCTCCAATAACACGA 59.436 43.478 0.00 0.00 0.00 4.35
2368 2526 4.036262 GCCATTATGCTCCAATAACACGAA 59.964 41.667 0.00 0.00 0.00 3.85
2369 2527 5.278463 GCCATTATGCTCCAATAACACGAAT 60.278 40.000 0.00 0.00 0.00 3.34
2370 2528 6.072728 GCCATTATGCTCCAATAACACGAATA 60.073 38.462 0.00 0.00 0.00 1.75
2371 2529 7.521423 GCCATTATGCTCCAATAACACGAATAA 60.521 37.037 0.00 0.00 0.00 1.40
2372 2530 8.514594 CCATTATGCTCCAATAACACGAATAAT 58.485 33.333 0.00 0.00 0.00 1.28
2373 2531 9.546909 CATTATGCTCCAATAACACGAATAATC 57.453 33.333 0.00 0.00 0.00 1.75
2374 2532 6.560253 ATGCTCCAATAACACGAATAATCC 57.440 37.500 0.00 0.00 0.00 3.01
2375 2533 4.509970 TGCTCCAATAACACGAATAATCCG 59.490 41.667 0.00 0.00 0.00 4.18
2376 2534 4.510340 GCTCCAATAACACGAATAATCCGT 59.490 41.667 0.00 0.00 41.36 4.69
2387 2545 6.737254 ACGAATAATCCGTGAATCAAAAGT 57.263 33.333 0.00 0.00 38.97 2.66
2388 2546 7.837202 ACGAATAATCCGTGAATCAAAAGTA 57.163 32.000 0.00 0.00 38.97 2.24
2389 2547 7.906160 ACGAATAATCCGTGAATCAAAAGTAG 58.094 34.615 0.00 0.00 38.97 2.57
2390 2548 7.548075 ACGAATAATCCGTGAATCAAAAGTAGT 59.452 33.333 0.00 0.00 38.97 2.73
2391 2549 7.846107 CGAATAATCCGTGAATCAAAAGTAGTG 59.154 37.037 0.00 0.00 0.00 2.74
2392 2550 5.880054 AATCCGTGAATCAAAAGTAGTGG 57.120 39.130 0.00 0.00 0.00 4.00
2393 2551 4.345859 TCCGTGAATCAAAAGTAGTGGT 57.654 40.909 0.00 0.00 0.00 4.16
2394 2552 4.710324 TCCGTGAATCAAAAGTAGTGGTT 58.290 39.130 0.00 0.00 0.00 3.67
2395 2553 4.513692 TCCGTGAATCAAAAGTAGTGGTTG 59.486 41.667 0.00 0.00 0.00 3.77
2396 2554 4.513692 CCGTGAATCAAAAGTAGTGGTTGA 59.486 41.667 0.00 0.68 35.83 3.18
2397 2555 5.181245 CCGTGAATCAAAAGTAGTGGTTGAT 59.819 40.000 4.58 4.58 42.38 2.57
2398 2556 6.079763 CGTGAATCAAAAGTAGTGGTTGATG 58.920 40.000 9.43 0.00 40.28 3.07
2399 2557 6.381801 GTGAATCAAAAGTAGTGGTTGATGG 58.618 40.000 9.43 0.00 40.28 3.51
2400 2558 6.206634 GTGAATCAAAAGTAGTGGTTGATGGA 59.793 38.462 9.43 0.24 40.28 3.41
2401 2559 6.775142 TGAATCAAAAGTAGTGGTTGATGGAA 59.225 34.615 9.43 0.00 40.28 3.53
2402 2560 6.575162 ATCAAAAGTAGTGGTTGATGGAAC 57.425 37.500 8.32 0.00 39.81 3.62
2434 2592 8.464770 TGAATCATTTTATTTCTTGCCTTTCG 57.535 30.769 0.00 0.00 0.00 3.46
2435 2593 7.545265 TGAATCATTTTATTTCTTGCCTTTCGG 59.455 33.333 0.00 0.00 0.00 4.30
2436 2594 6.582677 TCATTTTATTTCTTGCCTTTCGGA 57.417 33.333 0.00 0.00 0.00 4.55
2437 2595 7.169158 TCATTTTATTTCTTGCCTTTCGGAT 57.831 32.000 0.00 0.00 0.00 4.18
2438 2596 7.610865 TCATTTTATTTCTTGCCTTTCGGATT 58.389 30.769 0.00 0.00 0.00 3.01
2439 2597 8.744652 TCATTTTATTTCTTGCCTTTCGGATTA 58.255 29.630 0.00 0.00 0.00 1.75
2440 2598 9.023967 CATTTTATTTCTTGCCTTTCGGATTAG 57.976 33.333 0.00 0.00 0.00 1.73
2441 2599 7.696992 TTTATTTCTTGCCTTTCGGATTAGT 57.303 32.000 0.00 0.00 0.00 2.24
2442 2600 5.567138 ATTTCTTGCCTTTCGGATTAGTG 57.433 39.130 0.00 0.00 0.00 2.74
2443 2601 3.695830 TCTTGCCTTTCGGATTAGTGT 57.304 42.857 0.00 0.00 0.00 3.55
2444 2602 4.811969 TCTTGCCTTTCGGATTAGTGTA 57.188 40.909 0.00 0.00 0.00 2.90
2445 2603 5.155278 TCTTGCCTTTCGGATTAGTGTAA 57.845 39.130 0.00 0.00 0.00 2.41
2446 2604 5.553123 TCTTGCCTTTCGGATTAGTGTAAA 58.447 37.500 0.00 0.00 0.00 2.01
2447 2605 5.410439 TCTTGCCTTTCGGATTAGTGTAAAC 59.590 40.000 0.00 0.00 0.00 2.01
2448 2606 4.901868 TGCCTTTCGGATTAGTGTAAACT 58.098 39.130 0.00 0.00 0.00 2.66
2449 2607 5.310451 TGCCTTTCGGATTAGTGTAAACTT 58.690 37.500 0.00 0.00 0.00 2.66
2450 2608 5.766174 TGCCTTTCGGATTAGTGTAAACTTT 59.234 36.000 0.00 0.00 0.00 2.66
2451 2609 6.263617 TGCCTTTCGGATTAGTGTAAACTTTT 59.736 34.615 0.00 0.00 0.00 2.27
2452 2610 7.444792 TGCCTTTCGGATTAGTGTAAACTTTTA 59.555 33.333 0.00 0.00 0.00 1.52
2453 2611 8.456471 GCCTTTCGGATTAGTGTAAACTTTTAT 58.544 33.333 0.00 0.00 0.00 1.40
2557 2715 9.712305 TTTTTACTTTTTGTGAACATTTCTGGA 57.288 25.926 0.00 0.00 0.00 3.86
2558 2716 9.883142 TTTTACTTTTTGTGAACATTTCTGGAT 57.117 25.926 0.00 0.00 0.00 3.41
2559 2717 8.870160 TTACTTTTTGTGAACATTTCTGGATG 57.130 30.769 0.00 0.00 0.00 3.51
2560 2718 5.754890 ACTTTTTGTGAACATTTCTGGATGC 59.245 36.000 0.00 0.00 0.00 3.91
2561 2719 4.933505 TTTGTGAACATTTCTGGATGCA 57.066 36.364 0.00 0.00 0.00 3.96
2562 2720 5.471556 TTTGTGAACATTTCTGGATGCAT 57.528 34.783 0.00 0.00 0.00 3.96
2563 2721 5.471556 TTGTGAACATTTCTGGATGCATT 57.528 34.783 0.00 0.00 0.00 3.56
2564 2722 5.471556 TGTGAACATTTCTGGATGCATTT 57.528 34.783 0.00 0.00 0.00 2.32
2565 2723 5.856156 TGTGAACATTTCTGGATGCATTTT 58.144 33.333 0.00 0.00 0.00 1.82
2566 2724 6.289834 TGTGAACATTTCTGGATGCATTTTT 58.710 32.000 0.00 0.00 0.00 1.94
2588 2746 8.622948 TTTTTGTTGGAAATTTGTAACACCTT 57.377 26.923 13.49 0.00 33.25 3.50
2589 2747 8.622948 TTTTGTTGGAAATTTGTAACACCTTT 57.377 26.923 13.49 0.00 33.25 3.11
2590 2748 8.622948 TTTGTTGGAAATTTGTAACACCTTTT 57.377 26.923 13.49 0.00 33.25 2.27
2591 2749 7.602517 TGTTGGAAATTTGTAACACCTTTTG 57.397 32.000 10.99 0.00 0.00 2.44
2593 2751 5.675538 TGGAAATTTGTAACACCTTTTGGG 58.324 37.500 0.00 0.00 46.08 4.12
2594 2752 5.425539 TGGAAATTTGTAACACCTTTTGGGA 59.574 36.000 0.00 0.00 46.08 4.37
2595 2753 6.070194 TGGAAATTTGTAACACCTTTTGGGAA 60.070 34.615 0.00 0.00 46.08 3.97
2596 2754 6.995686 GGAAATTTGTAACACCTTTTGGGAAT 59.004 34.615 0.00 0.00 46.08 3.01
2597 2755 7.500892 GGAAATTTGTAACACCTTTTGGGAATT 59.499 33.333 0.00 0.00 46.08 2.17
2598 2756 8.815565 AAATTTGTAACACCTTTTGGGAATTT 57.184 26.923 0.00 0.00 46.08 1.82
2599 2757 8.815565 AATTTGTAACACCTTTTGGGAATTTT 57.184 26.923 0.00 0.00 46.08 1.82
2600 2758 7.617041 TTTGTAACACCTTTTGGGAATTTTG 57.383 32.000 0.00 0.00 46.08 2.44
2601 2759 6.546428 TGTAACACCTTTTGGGAATTTTGA 57.454 33.333 0.00 0.00 46.08 2.69
2602 2760 6.342111 TGTAACACCTTTTGGGAATTTTGAC 58.658 36.000 0.00 0.00 46.08 3.18
2603 2761 4.415881 ACACCTTTTGGGAATTTTGACC 57.584 40.909 0.00 0.00 46.08 4.02
2604 2762 3.777522 ACACCTTTTGGGAATTTTGACCA 59.222 39.130 0.00 0.00 46.08 4.02
2605 2763 4.141733 ACACCTTTTGGGAATTTTGACCAG 60.142 41.667 0.00 0.00 46.08 4.00
2606 2764 4.037222 ACCTTTTGGGAATTTTGACCAGT 58.963 39.130 0.00 0.00 46.08 4.00
2607 2765 4.473196 ACCTTTTGGGAATTTTGACCAGTT 59.527 37.500 0.00 0.00 46.08 3.16
2608 2766 5.045213 ACCTTTTGGGAATTTTGACCAGTTT 60.045 36.000 0.00 0.00 46.08 2.66
2609 2767 5.527214 CCTTTTGGGAATTTTGACCAGTTTC 59.473 40.000 0.00 0.00 35.37 2.78
2610 2768 5.948742 TTTGGGAATTTTGACCAGTTTCT 57.051 34.783 0.00 0.00 35.37 2.52
2611 2769 7.418483 CCTTTTGGGAATTTTGACCAGTTTCTA 60.418 37.037 0.00 0.00 35.37 2.10
2612 2770 7.425224 TTTGGGAATTTTGACCAGTTTCTAA 57.575 32.000 0.00 0.00 35.37 2.10
2613 2771 7.425224 TTGGGAATTTTGACCAGTTTCTAAA 57.575 32.000 0.00 0.00 35.37 1.85
2614 2772 7.049799 TGGGAATTTTGACCAGTTTCTAAAG 57.950 36.000 0.00 0.00 0.00 1.85
2615 2773 6.836527 TGGGAATTTTGACCAGTTTCTAAAGA 59.163 34.615 0.00 0.00 0.00 2.52
2616 2774 7.014230 TGGGAATTTTGACCAGTTTCTAAAGAG 59.986 37.037 0.00 0.00 0.00 2.85
2617 2775 7.014326 GGGAATTTTGACCAGTTTCTAAAGAGT 59.986 37.037 0.00 0.00 0.00 3.24
2618 2776 7.862873 GGAATTTTGACCAGTTTCTAAAGAGTG 59.137 37.037 0.00 0.00 0.00 3.51
2619 2777 7.881775 ATTTTGACCAGTTTCTAAAGAGTGT 57.118 32.000 0.00 0.00 0.00 3.55
2620 2778 7.696992 TTTTGACCAGTTTCTAAAGAGTGTT 57.303 32.000 0.00 0.00 0.00 3.32
2621 2779 7.696992 TTTGACCAGTTTCTAAAGAGTGTTT 57.303 32.000 0.00 0.00 0.00 2.83
2622 2780 8.795842 TTTGACCAGTTTCTAAAGAGTGTTTA 57.204 30.769 0.00 0.00 0.00 2.01
2623 2781 8.974060 TTGACCAGTTTCTAAAGAGTGTTTAT 57.026 30.769 0.00 0.00 0.00 1.40
2625 2783 9.485206 TGACCAGTTTCTAAAGAGTGTTTATAC 57.515 33.333 0.00 0.00 0.00 1.47
2626 2784 9.485206 GACCAGTTTCTAAAGAGTGTTTATACA 57.515 33.333 0.00 0.00 0.00 2.29
2698 2856 8.710835 ATTTTCGATAAAGTTTGTTGTTTGGT 57.289 26.923 0.00 0.00 0.00 3.67
2699 2857 9.804758 ATTTTCGATAAAGTTTGTTGTTTGGTA 57.195 25.926 0.00 0.00 0.00 3.25
2700 2858 9.804758 TTTTCGATAAAGTTTGTTGTTTGGTAT 57.195 25.926 0.00 0.00 0.00 2.73
2701 2859 9.804758 TTTCGATAAAGTTTGTTGTTTGGTATT 57.195 25.926 0.00 0.00 0.00 1.89
2702 2860 9.453325 TTCGATAAAGTTTGTTGTTTGGTATTC 57.547 29.630 0.00 0.00 0.00 1.75
2703 2861 8.077386 TCGATAAAGTTTGTTGTTTGGTATTCC 58.923 33.333 0.00 0.00 0.00 3.01
2704 2862 8.079809 CGATAAAGTTTGTTGTTTGGTATTCCT 58.920 33.333 0.00 0.00 34.23 3.36
2705 2863 9.406828 GATAAAGTTTGTTGTTTGGTATTCCTC 57.593 33.333 0.00 0.00 34.23 3.71
2706 2864 7.418337 AAAGTTTGTTGTTTGGTATTCCTCT 57.582 32.000 0.00 0.00 34.23 3.69
2707 2865 7.418337 AAGTTTGTTGTTTGGTATTCCTCTT 57.582 32.000 0.00 0.00 34.23 2.85
2708 2866 7.418337 AGTTTGTTGTTTGGTATTCCTCTTT 57.582 32.000 0.00 0.00 34.23 2.52
2709 2867 7.264947 AGTTTGTTGTTTGGTATTCCTCTTTG 58.735 34.615 0.00 0.00 34.23 2.77
2710 2868 6.783708 TTGTTGTTTGGTATTCCTCTTTGT 57.216 33.333 0.00 0.00 34.23 2.83
2711 2869 6.142818 TGTTGTTTGGTATTCCTCTTTGTG 57.857 37.500 0.00 0.00 34.23 3.33
2712 2870 5.068460 TGTTGTTTGGTATTCCTCTTTGTGG 59.932 40.000 0.00 0.00 34.23 4.17
2713 2871 4.798882 TGTTTGGTATTCCTCTTTGTGGT 58.201 39.130 0.00 0.00 34.23 4.16
2714 2872 5.205056 TGTTTGGTATTCCTCTTTGTGGTT 58.795 37.500 0.00 0.00 34.23 3.67
2715 2873 5.300792 TGTTTGGTATTCCTCTTTGTGGTTC 59.699 40.000 0.00 0.00 34.23 3.62
2716 2874 4.993705 TGGTATTCCTCTTTGTGGTTCT 57.006 40.909 0.00 0.00 34.23 3.01
2717 2875 5.319043 TGGTATTCCTCTTTGTGGTTCTT 57.681 39.130 0.00 0.00 34.23 2.52
2718 2876 5.070001 TGGTATTCCTCTTTGTGGTTCTTG 58.930 41.667 0.00 0.00 34.23 3.02
2719 2877 5.070685 GGTATTCCTCTTTGTGGTTCTTGT 58.929 41.667 0.00 0.00 0.00 3.16
2720 2878 5.181433 GGTATTCCTCTTTGTGGTTCTTGTC 59.819 44.000 0.00 0.00 0.00 3.18
2721 2879 2.833794 TCCTCTTTGTGGTTCTTGTCG 58.166 47.619 0.00 0.00 0.00 4.35
2722 2880 1.264288 CCTCTTTGTGGTTCTTGTCGC 59.736 52.381 0.00 0.00 0.00 5.19
2723 2881 1.939934 CTCTTTGTGGTTCTTGTCGCA 59.060 47.619 0.00 0.00 0.00 5.10
2724 2882 1.668751 TCTTTGTGGTTCTTGTCGCAC 59.331 47.619 0.00 0.00 0.00 5.34
2725 2883 1.670811 CTTTGTGGTTCTTGTCGCACT 59.329 47.619 0.00 0.00 0.00 4.40
2726 2884 1.295792 TTGTGGTTCTTGTCGCACTC 58.704 50.000 0.00 0.00 0.00 3.51
2727 2885 0.874175 TGTGGTTCTTGTCGCACTCG 60.874 55.000 0.00 0.00 0.00 4.18
2728 2886 1.954146 TGGTTCTTGTCGCACTCGC 60.954 57.895 0.00 0.00 35.26 5.03
2729 2887 1.664965 GGTTCTTGTCGCACTCGCT 60.665 57.895 0.00 0.00 35.30 4.93
2730 2888 1.488957 GTTCTTGTCGCACTCGCTG 59.511 57.895 0.00 0.00 35.30 5.18
2731 2889 2.310233 TTCTTGTCGCACTCGCTGC 61.310 57.895 0.00 0.00 43.21 5.25
2732 2890 3.782244 CTTGTCGCACTCGCTGCC 61.782 66.667 0.00 0.00 43.84 4.85
2738 2896 4.074526 GCACTCGCTGCCCTCTCA 62.075 66.667 0.00 0.00 40.42 3.27
2739 2897 2.898738 CACTCGCTGCCCTCTCAT 59.101 61.111 0.00 0.00 0.00 2.90
2740 2898 1.227205 CACTCGCTGCCCTCTCATC 60.227 63.158 0.00 0.00 0.00 2.92
2741 2899 1.381056 ACTCGCTGCCCTCTCATCT 60.381 57.895 0.00 0.00 0.00 2.90
2742 2900 1.363443 CTCGCTGCCCTCTCATCTC 59.637 63.158 0.00 0.00 0.00 2.75
2743 2901 1.076412 TCGCTGCCCTCTCATCTCT 60.076 57.895 0.00 0.00 0.00 3.10
2744 2902 1.106351 TCGCTGCCCTCTCATCTCTC 61.106 60.000 0.00 0.00 0.00 3.20
2745 2903 1.108727 CGCTGCCCTCTCATCTCTCT 61.109 60.000 0.00 0.00 0.00 3.10
2746 2904 0.390124 GCTGCCCTCTCATCTCTCTG 59.610 60.000 0.00 0.00 0.00 3.35
2747 2905 1.779221 CTGCCCTCTCATCTCTCTGT 58.221 55.000 0.00 0.00 0.00 3.41
2748 2906 2.109774 CTGCCCTCTCATCTCTCTGTT 58.890 52.381 0.00 0.00 0.00 3.16
2749 2907 2.500910 CTGCCCTCTCATCTCTCTGTTT 59.499 50.000 0.00 0.00 0.00 2.83
2750 2908 2.909006 TGCCCTCTCATCTCTCTGTTTT 59.091 45.455 0.00 0.00 0.00 2.43
2751 2909 3.055530 TGCCCTCTCATCTCTCTGTTTTC 60.056 47.826 0.00 0.00 0.00 2.29
2752 2910 3.681313 GCCCTCTCATCTCTCTGTTTTCC 60.681 52.174 0.00 0.00 0.00 3.13
2753 2911 3.517100 CCCTCTCATCTCTCTGTTTTCCA 59.483 47.826 0.00 0.00 0.00 3.53
2754 2912 4.502962 CCTCTCATCTCTCTGTTTTCCAC 58.497 47.826 0.00 0.00 0.00 4.02
2755 2913 4.502962 CTCTCATCTCTCTGTTTTCCACC 58.497 47.826 0.00 0.00 0.00 4.61
2756 2914 3.903714 TCTCATCTCTCTGTTTTCCACCA 59.096 43.478 0.00 0.00 0.00 4.17
2757 2915 3.999663 CTCATCTCTCTGTTTTCCACCAC 59.000 47.826 0.00 0.00 0.00 4.16
2758 2916 3.390967 TCATCTCTCTGTTTTCCACCACA 59.609 43.478 0.00 0.00 0.00 4.17
2759 2917 3.475566 TCTCTCTGTTTTCCACCACAG 57.524 47.619 0.00 0.00 41.65 3.66
2760 2918 3.038280 TCTCTCTGTTTTCCACCACAGA 58.962 45.455 2.23 2.23 45.77 3.41
2761 2919 3.648067 TCTCTCTGTTTTCCACCACAGAT 59.352 43.478 2.60 0.00 46.52 2.90
2762 2920 3.999663 CTCTCTGTTTTCCACCACAGATC 59.000 47.826 2.60 0.00 46.52 2.75
2763 2921 3.390967 TCTCTGTTTTCCACCACAGATCA 59.609 43.478 2.60 0.00 46.52 2.92
2764 2922 4.136796 CTCTGTTTTCCACCACAGATCAA 58.863 43.478 2.60 0.00 46.52 2.57
2765 2923 3.882888 TCTGTTTTCCACCACAGATCAAC 59.117 43.478 0.00 0.00 43.63 3.18
2766 2924 2.616376 TGTTTTCCACCACAGATCAACG 59.384 45.455 0.00 0.00 0.00 4.10
2767 2925 1.234821 TTTCCACCACAGATCAACGC 58.765 50.000 0.00 0.00 0.00 4.84
2768 2926 0.605319 TTCCACCACAGATCAACGCC 60.605 55.000 0.00 0.00 0.00 5.68
2769 2927 1.302431 CCACCACAGATCAACGCCA 60.302 57.895 0.00 0.00 0.00 5.69
2770 2928 0.677731 CCACCACAGATCAACGCCAT 60.678 55.000 0.00 0.00 0.00 4.40
2771 2929 0.448990 CACCACAGATCAACGCCATG 59.551 55.000 0.00 0.00 0.00 3.66
2772 2930 0.677731 ACCACAGATCAACGCCATGG 60.678 55.000 7.63 7.63 0.00 3.66
2773 2931 0.392863 CCACAGATCAACGCCATGGA 60.393 55.000 18.40 0.00 0.00 3.41
2774 2932 1.671979 CACAGATCAACGCCATGGAT 58.328 50.000 18.40 0.00 0.00 3.41
2775 2933 1.332686 CACAGATCAACGCCATGGATG 59.667 52.381 18.40 11.10 0.00 3.51
2776 2934 1.065199 ACAGATCAACGCCATGGATGT 60.065 47.619 18.40 10.39 0.00 3.06
2777 2935 2.019249 CAGATCAACGCCATGGATGTT 58.981 47.619 18.40 16.30 0.00 2.71
2778 2936 2.019249 AGATCAACGCCATGGATGTTG 58.981 47.619 30.10 30.10 43.26 3.33
2779 2937 3.641017 TCAACGCCATGGATGTTGA 57.359 47.368 32.51 32.51 46.93 3.18
2780 2938 1.452110 TCAACGCCATGGATGTTGAG 58.548 50.000 32.51 18.72 44.97 3.02
2781 2939 0.179156 CAACGCCATGGATGTTGAGC 60.179 55.000 31.33 9.70 44.34 4.26
2782 2940 1.315257 AACGCCATGGATGTTGAGCC 61.315 55.000 18.40 0.00 0.00 4.70
2783 2941 2.827051 CGCCATGGATGTTGAGCCG 61.827 63.158 18.40 1.52 0.00 5.52
2784 2942 1.451927 GCCATGGATGTTGAGCCGA 60.452 57.895 18.40 0.00 0.00 5.54
2785 2943 0.820891 GCCATGGATGTTGAGCCGAT 60.821 55.000 18.40 0.00 0.00 4.18
2786 2944 0.949397 CCATGGATGTTGAGCCGATG 59.051 55.000 5.56 0.00 0.00 3.84
2787 2945 0.309922 CATGGATGTTGAGCCGATGC 59.690 55.000 0.00 0.00 37.95 3.91
2798 2956 4.899239 CCGATGCTCACCTCCGCC 62.899 72.222 0.00 0.00 0.00 6.13
2799 2957 3.842923 CGATGCTCACCTCCGCCT 61.843 66.667 0.00 0.00 0.00 5.52
2800 2958 2.107953 GATGCTCACCTCCGCCTC 59.892 66.667 0.00 0.00 0.00 4.70
2801 2959 2.685017 ATGCTCACCTCCGCCTCA 60.685 61.111 0.00 0.00 0.00 3.86
2802 2960 2.914777 GATGCTCACCTCCGCCTCAC 62.915 65.000 0.00 0.00 0.00 3.51
2803 2961 4.803426 GCTCACCTCCGCCTCACG 62.803 72.222 0.00 0.00 43.15 4.35
2804 2962 4.803426 CTCACCTCCGCCTCACGC 62.803 72.222 0.00 0.00 41.76 5.34
2806 2964 4.379243 CACCTCCGCCTCACGCTT 62.379 66.667 0.00 0.00 41.76 4.68
2807 2965 4.070552 ACCTCCGCCTCACGCTTC 62.071 66.667 0.00 0.00 41.76 3.86
2808 2966 4.821589 CCTCCGCCTCACGCTTCC 62.822 72.222 0.00 0.00 41.76 3.46
2815 2973 4.379243 CTCACGCTTCCGGTGGCT 62.379 66.667 16.39 4.46 39.22 4.75
2816 2974 4.680237 TCACGCTTCCGGTGGCTG 62.680 66.667 16.39 13.52 39.22 4.85
2826 2984 3.964875 GGTGGCTGCACCGTTGTG 61.965 66.667 0.50 0.00 43.94 3.33
2834 2992 2.978010 CACCGTTGTGCCCTCCAC 60.978 66.667 0.00 0.00 44.90 4.02
2835 2993 4.265056 ACCGTTGTGCCCTCCACC 62.265 66.667 0.00 0.00 44.01 4.61
2837 2995 3.953775 CGTTGTGCCCTCCACCCT 61.954 66.667 0.00 0.00 44.01 4.34
2838 2996 2.282462 GTTGTGCCCTCCACCCTG 60.282 66.667 0.00 0.00 44.01 4.45
2839 2997 3.579302 TTGTGCCCTCCACCCTGG 61.579 66.667 0.00 0.00 44.01 4.45
2849 3007 4.910585 CACCCTGGCCGCCGTATC 62.911 72.222 4.58 0.00 0.00 2.24
2851 3009 4.169696 CCCTGGCCGCCGTATCAA 62.170 66.667 4.58 0.00 0.00 2.57
2852 3010 2.111043 CCTGGCCGCCGTATCAAT 59.889 61.111 4.58 0.00 0.00 2.57
2853 3011 2.253758 CCTGGCCGCCGTATCAATG 61.254 63.158 4.58 0.00 0.00 2.82
2854 3012 2.203139 TGGCCGCCGTATCAATGG 60.203 61.111 4.58 0.00 34.56 3.16
2855 3013 2.978010 GGCCGCCGTATCAATGGG 60.978 66.667 0.00 0.00 31.75 4.00
2856 3014 2.978010 GCCGCCGTATCAATGGGG 60.978 66.667 0.00 0.00 42.91 4.96
2857 3015 2.978010 CCGCCGTATCAATGGGGC 60.978 66.667 0.00 0.00 42.14 5.80
2858 3016 2.978010 CGCCGTATCAATGGGGCC 60.978 66.667 0.00 0.00 42.59 5.80
2859 3017 2.515901 GCCGTATCAATGGGGCCT 59.484 61.111 0.84 0.00 39.67 5.19
2860 3018 1.152756 GCCGTATCAATGGGGCCTT 60.153 57.895 0.84 0.00 39.67 4.35
2861 3019 1.455383 GCCGTATCAATGGGGCCTTG 61.455 60.000 0.84 0.43 39.67 3.61
2862 3020 1.455383 CCGTATCAATGGGGCCTTGC 61.455 60.000 0.84 0.00 0.00 4.01
2863 3021 0.751277 CGTATCAATGGGGCCTTGCA 60.751 55.000 0.84 0.00 0.00 4.08
2864 3022 1.708341 GTATCAATGGGGCCTTGCAT 58.292 50.000 0.84 0.00 0.00 3.96
2865 3023 1.342174 GTATCAATGGGGCCTTGCATG 59.658 52.381 0.84 0.00 0.00 4.06
2866 3024 1.052124 ATCAATGGGGCCTTGCATGG 61.052 55.000 14.22 14.22 0.00 3.66
2874 3032 3.004951 CCTTGCATGGCTCCCTCT 58.995 61.111 5.58 0.00 0.00 3.69
2875 3033 1.305623 CCTTGCATGGCTCCCTCTT 59.694 57.895 5.58 0.00 0.00 2.85
2876 3034 0.324091 CCTTGCATGGCTCCCTCTTT 60.324 55.000 5.58 0.00 0.00 2.52
2877 3035 0.815734 CTTGCATGGCTCCCTCTTTG 59.184 55.000 0.00 0.00 0.00 2.77
2878 3036 0.112995 TTGCATGGCTCCCTCTTTGT 59.887 50.000 0.00 0.00 0.00 2.83
2879 3037 0.322816 TGCATGGCTCCCTCTTTGTC 60.323 55.000 0.00 0.00 0.00 3.18
2880 3038 0.034670 GCATGGCTCCCTCTTTGTCT 60.035 55.000 0.00 0.00 0.00 3.41
2881 3039 2.016096 GCATGGCTCCCTCTTTGTCTC 61.016 57.143 0.00 0.00 0.00 3.36
2882 3040 0.539051 ATGGCTCCCTCTTTGTCTCG 59.461 55.000 0.00 0.00 0.00 4.04
2883 3041 0.832135 TGGCTCCCTCTTTGTCTCGT 60.832 55.000 0.00 0.00 0.00 4.18
2884 3042 0.321996 GGCTCCCTCTTTGTCTCGTT 59.678 55.000 0.00 0.00 0.00 3.85
2885 3043 1.270893 GGCTCCCTCTTTGTCTCGTTT 60.271 52.381 0.00 0.00 0.00 3.60
2886 3044 2.070028 GCTCCCTCTTTGTCTCGTTTC 58.930 52.381 0.00 0.00 0.00 2.78
2887 3045 2.689646 CTCCCTCTTTGTCTCGTTTCC 58.310 52.381 0.00 0.00 0.00 3.13
2888 3046 1.346722 TCCCTCTTTGTCTCGTTTCCC 59.653 52.381 0.00 0.00 0.00 3.97
2889 3047 1.348036 CCCTCTTTGTCTCGTTTCCCT 59.652 52.381 0.00 0.00 0.00 4.20
2890 3048 2.613223 CCCTCTTTGTCTCGTTTCCCTC 60.613 54.545 0.00 0.00 0.00 4.30
2891 3049 2.329379 CTCTTTGTCTCGTTTCCCTCG 58.671 52.381 0.00 0.00 0.00 4.63
2892 3050 0.790814 CTTTGTCTCGTTTCCCTCGC 59.209 55.000 0.00 0.00 0.00 5.03
2893 3051 0.105224 TTTGTCTCGTTTCCCTCGCA 59.895 50.000 0.00 0.00 0.00 5.10
2894 3052 0.599204 TTGTCTCGTTTCCCTCGCAC 60.599 55.000 0.00 0.00 0.00 5.34
2895 3053 2.087009 GTCTCGTTTCCCTCGCACG 61.087 63.158 0.00 0.00 35.18 5.34
2896 3054 3.479269 CTCGTTTCCCTCGCACGC 61.479 66.667 0.00 0.00 33.85 5.34
2899 3057 3.119096 GTTTCCCTCGCACGCCTC 61.119 66.667 0.00 0.00 0.00 4.70
2900 3058 4.388499 TTTCCCTCGCACGCCTCC 62.388 66.667 0.00 0.00 0.00 4.30
2917 3075 4.732106 CTCGCGTAGGATCCAACC 57.268 61.111 15.82 0.00 0.00 3.77
2918 3076 1.299165 CTCGCGTAGGATCCAACCG 60.299 63.158 15.82 13.50 34.73 4.44
2919 3077 2.001361 CTCGCGTAGGATCCAACCGT 62.001 60.000 15.82 0.00 34.73 4.83
2920 3078 1.876714 CGCGTAGGATCCAACCGTG 60.877 63.158 15.82 14.81 34.73 4.94
2922 3080 1.895238 CGTAGGATCCAACCGTGGT 59.105 57.895 15.82 0.00 46.11 4.16
2923 3081 0.459585 CGTAGGATCCAACCGTGGTG 60.460 60.000 15.82 0.00 46.11 4.17
2924 3082 0.899720 GTAGGATCCAACCGTGGTGA 59.100 55.000 15.82 0.00 46.11 4.02
2925 3083 1.485066 GTAGGATCCAACCGTGGTGAT 59.515 52.381 15.82 0.00 46.11 3.06
2926 3084 0.541863 AGGATCCAACCGTGGTGATC 59.458 55.000 15.82 9.70 46.11 2.92
2927 3085 0.810031 GGATCCAACCGTGGTGATCG 60.810 60.000 6.95 0.00 46.11 3.69
2949 3107 3.156334 GCAAGTAGCCGTCGTGTG 58.844 61.111 0.00 0.00 37.23 3.82
2950 3108 2.380410 GCAAGTAGCCGTCGTGTGG 61.380 63.158 0.00 0.00 37.23 4.17
2951 3109 1.006571 CAAGTAGCCGTCGTGTGGT 60.007 57.895 0.00 0.00 0.00 4.16
2952 3110 1.006571 AAGTAGCCGTCGTGTGGTG 60.007 57.895 0.00 0.00 0.00 4.17
2953 3111 3.110178 GTAGCCGTCGTGTGGTGC 61.110 66.667 0.00 0.00 0.00 5.01
2954 3112 4.367023 TAGCCGTCGTGTGGTGCC 62.367 66.667 0.00 0.00 0.00 5.01
2957 3115 4.619227 CCGTCGTGTGGTGCCCTT 62.619 66.667 0.00 0.00 0.00 3.95
2958 3116 3.345808 CGTCGTGTGGTGCCCTTG 61.346 66.667 0.00 0.00 0.00 3.61
2959 3117 3.660111 GTCGTGTGGTGCCCTTGC 61.660 66.667 0.00 0.00 38.26 4.01
2960 3118 4.947147 TCGTGTGGTGCCCTTGCC 62.947 66.667 0.00 0.00 36.33 4.52
2963 3121 4.947147 TGTGGTGCCCTTGCCGTC 62.947 66.667 0.00 0.00 36.33 4.79
2968 3126 4.555709 TGCCCTTGCCGTCGTGTT 62.556 61.111 0.00 0.00 36.33 3.32
2969 3127 3.284449 GCCCTTGCCGTCGTGTTT 61.284 61.111 0.00 0.00 0.00 2.83
2970 3128 1.962306 GCCCTTGCCGTCGTGTTTA 60.962 57.895 0.00 0.00 0.00 2.01
2971 3129 1.508808 GCCCTTGCCGTCGTGTTTAA 61.509 55.000 0.00 0.00 0.00 1.52
2972 3130 0.236449 CCCTTGCCGTCGTGTTTAAC 59.764 55.000 0.00 0.00 0.00 2.01
2973 3131 0.938713 CCTTGCCGTCGTGTTTAACA 59.061 50.000 0.00 0.00 0.00 2.41
2974 3132 1.533731 CCTTGCCGTCGTGTTTAACAT 59.466 47.619 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.521256 GCCACAATTACTACCAAGGAAACA 59.479 41.667 0.00 0.00 0.00 2.83
2 3 4.730966 TGCCACAATTACTACCAAGGAAA 58.269 39.130 0.00 0.00 0.00 3.13
3 4 4.374689 TGCCACAATTACTACCAAGGAA 57.625 40.909 0.00 0.00 0.00 3.36
4 5 4.584638 ATGCCACAATTACTACCAAGGA 57.415 40.909 0.00 0.00 0.00 3.36
5 6 5.885912 ACTTATGCCACAATTACTACCAAGG 59.114 40.000 0.00 0.00 0.00 3.61
6 7 8.395633 GTTACTTATGCCACAATTACTACCAAG 58.604 37.037 0.00 0.00 0.00 3.61
7 8 7.064847 CGTTACTTATGCCACAATTACTACCAA 59.935 37.037 0.00 0.00 0.00 3.67
8 9 6.535865 CGTTACTTATGCCACAATTACTACCA 59.464 38.462 0.00 0.00 0.00 3.25
9 10 6.757947 TCGTTACTTATGCCACAATTACTACC 59.242 38.462 0.00 0.00 0.00 3.18
10 11 7.042925 CCTCGTTACTTATGCCACAATTACTAC 60.043 40.741 0.00 0.00 0.00 2.73
11 12 6.982141 CCTCGTTACTTATGCCACAATTACTA 59.018 38.462 0.00 0.00 0.00 1.82
12 13 5.815740 CCTCGTTACTTATGCCACAATTACT 59.184 40.000 0.00 0.00 0.00 2.24
13 14 5.007332 CCCTCGTTACTTATGCCACAATTAC 59.993 44.000 0.00 0.00 0.00 1.89
14 15 5.120399 CCCTCGTTACTTATGCCACAATTA 58.880 41.667 0.00 0.00 0.00 1.40
15 16 3.945285 CCCTCGTTACTTATGCCACAATT 59.055 43.478 0.00 0.00 0.00 2.32
16 17 3.054655 ACCCTCGTTACTTATGCCACAAT 60.055 43.478 0.00 0.00 0.00 2.71
17 18 2.303600 ACCCTCGTTACTTATGCCACAA 59.696 45.455 0.00 0.00 0.00 3.33
18 19 1.903860 ACCCTCGTTACTTATGCCACA 59.096 47.619 0.00 0.00 0.00 4.17
19 20 2.277084 CACCCTCGTTACTTATGCCAC 58.723 52.381 0.00 0.00 0.00 5.01
25 26 6.211184 TCAAAATCCTACACCCTCGTTACTTA 59.789 38.462 0.00 0.00 0.00 2.24
35 36 2.576648 AGGTCCTCAAAATCCTACACCC 59.423 50.000 0.00 0.00 0.00 4.61
102 103 9.643693 GAATTAAAGTGGACATGTCAATCAATT 57.356 29.630 26.47 20.09 0.00 2.32
123 124 9.739276 CATGGGGTTTGCTATTCTATAGAATTA 57.261 33.333 28.39 15.18 41.64 1.40
127 128 7.387265 TTCATGGGGTTTGCTATTCTATAGA 57.613 36.000 0.00 0.00 0.00 1.98
138 139 6.715347 ATAGTCTAAATTCATGGGGTTTGC 57.285 37.500 0.00 0.00 0.00 3.68
168 169 0.244450 AAACCGCATGTGGCATCAAG 59.756 50.000 25.33 0.00 45.17 3.02
175 176 0.602562 AACCATCAAACCGCATGTGG 59.397 50.000 23.88 23.88 0.00 4.17
179 199 2.643551 CTCCTAACCATCAAACCGCAT 58.356 47.619 0.00 0.00 0.00 4.73
196 216 3.637694 GACTAAGGATACCACTGTCCTCC 59.362 52.174 0.00 0.00 43.94 4.30
197 217 3.637694 GGACTAAGGATACCACTGTCCTC 59.362 52.174 14.01 0.00 43.94 3.71
202 222 6.495181 ACTCATATGGACTAAGGATACCACTG 59.505 42.308 2.13 0.00 35.19 3.66
229 249 7.676947 AGCACTAATGTCAAGTTTAGGACTTA 58.323 34.615 0.00 0.00 46.75 2.24
232 252 5.062308 CGAGCACTAATGTCAAGTTTAGGAC 59.938 44.000 0.00 0.00 31.15 3.85
249 269 0.811915 AGAACGTCTATGCGAGCACT 59.188 50.000 0.00 0.00 35.59 4.40
250 270 0.917259 CAGAACGTCTATGCGAGCAC 59.083 55.000 0.00 0.00 35.59 4.40
255 275 0.098200 TCGACCAGAACGTCTATGCG 59.902 55.000 0.00 0.00 37.94 4.73
272 292 3.390135 ACCACATACGCCTTCATAATCG 58.610 45.455 0.00 0.00 0.00 3.34
348 368 1.008875 ACGCATGCACACACTACTCG 61.009 55.000 19.57 0.00 0.00 4.18
350 370 2.532186 CACGCATGCACACACTACT 58.468 52.632 19.57 0.00 0.00 2.57
406 426 0.032952 AACACGGTGCAGACGTACAT 59.967 50.000 15.04 3.05 43.58 2.29
440 460 8.437360 AAATTCCATTTCACTCAAACCTTTTC 57.563 30.769 0.00 0.00 0.00 2.29
735 834 0.550914 GTGGAGATGCCCCCATACAA 59.449 55.000 0.00 0.00 34.58 2.41
736 835 0.327480 AGTGGAGATGCCCCCATACA 60.327 55.000 0.00 0.00 34.58 2.29
868 989 3.513912 CAGTATGTAGTGGAGTGGTGGAA 59.486 47.826 0.00 0.00 0.00 3.53
881 1002 0.729478 CGATCGCCGGCAGTATGTAG 60.729 60.000 28.98 7.38 39.31 2.74
888 1009 4.933064 GGTCTCGATCGCCGGCAG 62.933 72.222 28.98 19.33 39.14 4.85
1033 1154 1.471684 GAGCGGGAAGAAGTCGAAGTA 59.528 52.381 0.00 0.00 0.00 2.24
1138 1259 0.898789 ATGACGACGTCCTTGGAGGT 60.899 55.000 24.33 13.93 36.53 3.85
1139 1260 0.179134 GATGACGACGTCCTTGGAGG 60.179 60.000 24.33 7.70 36.46 4.30
1214 1335 3.711059 TAGACGAGGACGGGGAGCC 62.711 68.421 0.00 0.00 44.46 4.70
1560 1693 4.856801 CCCTTGATGCCGACCCCG 62.857 72.222 0.00 0.00 0.00 5.73
1561 1694 4.506255 CCCCTTGATGCCGACCCC 62.506 72.222 0.00 0.00 0.00 4.95
1957 2093 0.665298 GCTCATTTGCGGAGGAATCC 59.335 55.000 0.00 0.00 37.93 3.01
1959 2095 1.097547 CGGCTCATTTGCGGAGGAAT 61.098 55.000 0.00 0.00 37.93 3.01
1996 2142 1.363246 ACCTTCCCTTCCCTTCACTC 58.637 55.000 0.00 0.00 0.00 3.51
1997 2143 1.705745 GAACCTTCCCTTCCCTTCACT 59.294 52.381 0.00 0.00 0.00 3.41
1998 2144 1.271982 GGAACCTTCCCTTCCCTTCAC 60.272 57.143 0.00 0.00 41.62 3.18
1999 2145 1.073098 GGAACCTTCCCTTCCCTTCA 58.927 55.000 0.00 0.00 41.62 3.02
2000 2146 3.981051 GGAACCTTCCCTTCCCTTC 57.019 57.895 0.00 0.00 41.62 3.46
2225 2383 5.654209 GGCCTCTACAGGAAAGATGATTTTT 59.346 40.000 0.00 0.00 43.65 1.94
2226 2384 5.196695 GGCCTCTACAGGAAAGATGATTTT 58.803 41.667 0.00 0.00 43.65 1.82
2227 2385 4.684485 CGGCCTCTACAGGAAAGATGATTT 60.684 45.833 0.00 0.00 43.65 2.17
2228 2386 3.181461 CGGCCTCTACAGGAAAGATGATT 60.181 47.826 0.00 0.00 43.65 2.57
2229 2387 2.366916 CGGCCTCTACAGGAAAGATGAT 59.633 50.000 0.00 0.00 43.65 2.45
2230 2388 1.757118 CGGCCTCTACAGGAAAGATGA 59.243 52.381 0.00 0.00 43.65 2.92
2231 2389 1.757118 TCGGCCTCTACAGGAAAGATG 59.243 52.381 0.00 0.00 43.65 2.90
2232 2390 2.160721 TCGGCCTCTACAGGAAAGAT 57.839 50.000 0.00 0.00 43.65 2.40
2233 2391 1.933021 TTCGGCCTCTACAGGAAAGA 58.067 50.000 0.00 0.00 43.65 2.52
2234 2392 2.622436 CTTTCGGCCTCTACAGGAAAG 58.378 52.381 11.15 11.15 43.65 2.62
2235 2393 1.338769 GCTTTCGGCCTCTACAGGAAA 60.339 52.381 0.00 0.00 43.65 3.13
2236 2394 0.249398 GCTTTCGGCCTCTACAGGAA 59.751 55.000 0.00 0.00 43.65 3.36
2277 2435 9.297586 CACGAGCATTTGTACTAGTAGAATTAA 57.702 33.333 12.81 0.00 0.00 1.40
2278 2436 7.434307 GCACGAGCATTTGTACTAGTAGAATTA 59.566 37.037 12.81 0.40 41.58 1.40
2279 2437 6.255887 GCACGAGCATTTGTACTAGTAGAATT 59.744 38.462 12.81 7.24 41.58 2.17
2280 2438 5.749109 GCACGAGCATTTGTACTAGTAGAAT 59.251 40.000 12.81 8.95 41.58 2.40
2281 2439 5.100259 GCACGAGCATTTGTACTAGTAGAA 58.900 41.667 8.34 8.34 41.58 2.10
2282 2440 4.669318 GCACGAGCATTTGTACTAGTAGA 58.331 43.478 1.87 0.00 41.58 2.59
2283 2441 3.482472 CGCACGAGCATTTGTACTAGTAG 59.518 47.826 1.87 0.00 42.27 2.57
2284 2442 3.119743 ACGCACGAGCATTTGTACTAGTA 60.120 43.478 5.50 0.00 42.27 1.82
2285 2443 2.259618 CGCACGAGCATTTGTACTAGT 58.740 47.619 5.50 0.00 42.27 2.57
2286 2444 2.259618 ACGCACGAGCATTTGTACTAG 58.740 47.619 5.50 0.00 42.27 2.57
2287 2445 2.357327 ACGCACGAGCATTTGTACTA 57.643 45.000 5.50 0.00 42.27 1.82
2288 2446 1.194547 CAACGCACGAGCATTTGTACT 59.805 47.619 5.50 0.00 42.27 2.73
2289 2447 1.591248 CAACGCACGAGCATTTGTAC 58.409 50.000 5.50 0.00 42.27 2.90
2290 2448 0.110419 GCAACGCACGAGCATTTGTA 60.110 50.000 14.66 0.00 42.27 2.41
2291 2449 1.370414 GCAACGCACGAGCATTTGT 60.370 52.632 14.66 0.00 42.27 2.83
2292 2450 0.933973 TTGCAACGCACGAGCATTTG 60.934 50.000 13.57 8.55 38.71 2.32
2293 2451 0.934436 GTTGCAACGCACGAGCATTT 60.934 50.000 14.90 0.00 38.71 2.32
2294 2452 1.370414 GTTGCAACGCACGAGCATT 60.370 52.632 14.90 0.00 38.71 3.56
2295 2453 2.252260 GTTGCAACGCACGAGCAT 59.748 55.556 14.90 0.00 38.71 3.79
2296 2454 4.292208 CGTTGCAACGCACGAGCA 62.292 61.111 35.89 9.96 46.06 4.26
2305 2463 0.385098 GTTTCTACGCCCGTTGCAAC 60.385 55.000 19.89 19.89 41.33 4.17
2306 2464 0.533308 AGTTTCTACGCCCGTTGCAA 60.533 50.000 0.00 0.00 41.33 4.08
2307 2465 0.947180 GAGTTTCTACGCCCGTTGCA 60.947 55.000 0.00 0.00 41.33 4.08
2308 2466 0.947180 TGAGTTTCTACGCCCGTTGC 60.947 55.000 0.00 0.00 0.00 4.17
2309 2467 1.722011 ATGAGTTTCTACGCCCGTTG 58.278 50.000 0.00 0.00 0.00 4.10
2310 2468 3.194116 TCTTATGAGTTTCTACGCCCGTT 59.806 43.478 0.00 0.00 0.00 4.44
2311 2469 2.756760 TCTTATGAGTTTCTACGCCCGT 59.243 45.455 0.00 0.00 0.00 5.28
2312 2470 3.114065 GTCTTATGAGTTTCTACGCCCG 58.886 50.000 0.00 0.00 0.00 6.13
2313 2471 4.119442 TGTCTTATGAGTTTCTACGCCC 57.881 45.455 0.00 0.00 0.00 6.13
2314 2472 5.348986 TCATGTCTTATGAGTTTCTACGCC 58.651 41.667 0.00 0.00 0.00 5.68
2315 2473 7.222805 TGAATCATGTCTTATGAGTTTCTACGC 59.777 37.037 0.00 0.00 0.00 4.42
2316 2474 8.634475 TGAATCATGTCTTATGAGTTTCTACG 57.366 34.615 0.00 0.00 0.00 3.51
2343 2501 4.610945 GTGTTATTGGAGCATAATGGCAC 58.389 43.478 0.00 0.00 35.83 5.01
2344 2502 3.314913 CGTGTTATTGGAGCATAATGGCA 59.685 43.478 0.00 0.00 35.83 4.92
2345 2503 3.563808 TCGTGTTATTGGAGCATAATGGC 59.436 43.478 0.00 0.00 0.00 4.40
2346 2504 5.749596 TTCGTGTTATTGGAGCATAATGG 57.250 39.130 0.00 0.00 0.00 3.16
2347 2505 9.546909 GATTATTCGTGTTATTGGAGCATAATG 57.453 33.333 0.00 0.00 0.00 1.90
2348 2506 8.730680 GGATTATTCGTGTTATTGGAGCATAAT 58.269 33.333 0.00 0.00 0.00 1.28
2349 2507 7.095397 CGGATTATTCGTGTTATTGGAGCATAA 60.095 37.037 0.00 0.00 0.00 1.90
2350 2508 6.367695 CGGATTATTCGTGTTATTGGAGCATA 59.632 38.462 0.00 0.00 0.00 3.14
2351 2509 5.179368 CGGATTATTCGTGTTATTGGAGCAT 59.821 40.000 0.00 0.00 0.00 3.79
2352 2510 4.509970 CGGATTATTCGTGTTATTGGAGCA 59.490 41.667 0.00 0.00 0.00 4.26
2353 2511 4.510340 ACGGATTATTCGTGTTATTGGAGC 59.490 41.667 0.00 0.00 39.55 4.70
2364 2522 6.737254 ACTTTTGATTCACGGATTATTCGT 57.263 33.333 0.00 0.00 41.93 3.85
2365 2523 7.846107 CACTACTTTTGATTCACGGATTATTCG 59.154 37.037 0.00 0.00 0.00 3.34
2366 2524 8.122952 CCACTACTTTTGATTCACGGATTATTC 58.877 37.037 0.00 0.00 0.00 1.75
2367 2525 7.610305 ACCACTACTTTTGATTCACGGATTATT 59.390 33.333 0.00 0.00 0.00 1.40
2368 2526 7.110155 ACCACTACTTTTGATTCACGGATTAT 58.890 34.615 0.00 0.00 0.00 1.28
2369 2527 6.469410 ACCACTACTTTTGATTCACGGATTA 58.531 36.000 0.00 0.00 0.00 1.75
2370 2528 5.313712 ACCACTACTTTTGATTCACGGATT 58.686 37.500 0.00 0.00 0.00 3.01
2371 2529 4.906618 ACCACTACTTTTGATTCACGGAT 58.093 39.130 0.00 0.00 0.00 4.18
2372 2530 4.345859 ACCACTACTTTTGATTCACGGA 57.654 40.909 0.00 0.00 0.00 4.69
2373 2531 4.513692 TCAACCACTACTTTTGATTCACGG 59.486 41.667 0.00 0.00 0.00 4.94
2374 2532 5.666969 TCAACCACTACTTTTGATTCACG 57.333 39.130 0.00 0.00 0.00 4.35
2375 2533 6.206634 TCCATCAACCACTACTTTTGATTCAC 59.793 38.462 0.00 0.00 37.78 3.18
2376 2534 6.303054 TCCATCAACCACTACTTTTGATTCA 58.697 36.000 0.00 0.00 37.78 2.57
2377 2535 6.817765 TCCATCAACCACTACTTTTGATTC 57.182 37.500 0.00 0.00 37.78 2.52
2378 2536 6.549364 TGTTCCATCAACCACTACTTTTGATT 59.451 34.615 0.00 0.00 37.78 2.57
2379 2537 6.068010 TGTTCCATCAACCACTACTTTTGAT 58.932 36.000 0.00 0.00 39.95 2.57
2380 2538 5.441500 TGTTCCATCAACCACTACTTTTGA 58.558 37.500 0.00 0.00 33.51 2.69
2381 2539 5.766150 TGTTCCATCAACCACTACTTTTG 57.234 39.130 0.00 0.00 33.51 2.44
2382 2540 6.777580 AGATTGTTCCATCAACCACTACTTTT 59.222 34.615 0.00 0.00 33.51 2.27
2383 2541 6.306987 AGATTGTTCCATCAACCACTACTTT 58.693 36.000 0.00 0.00 33.51 2.66
2384 2542 5.880901 AGATTGTTCCATCAACCACTACTT 58.119 37.500 0.00 0.00 33.51 2.24
2385 2543 5.505181 AGATTGTTCCATCAACCACTACT 57.495 39.130 0.00 0.00 33.51 2.57
2386 2544 7.047891 TCATAGATTGTTCCATCAACCACTAC 58.952 38.462 0.00 0.00 33.51 2.73
2387 2545 7.194112 TCATAGATTGTTCCATCAACCACTA 57.806 36.000 0.00 0.00 33.51 2.74
2388 2546 6.065976 TCATAGATTGTTCCATCAACCACT 57.934 37.500 0.00 0.00 33.51 4.00
2389 2547 6.757897 TTCATAGATTGTTCCATCAACCAC 57.242 37.500 0.00 0.00 33.51 4.16
2390 2548 7.118060 TGATTCATAGATTGTTCCATCAACCA 58.882 34.615 0.00 0.00 33.51 3.67
2391 2549 7.572523 TGATTCATAGATTGTTCCATCAACC 57.427 36.000 0.00 0.00 33.51 3.77
2408 2566 9.090692 CGAAAGGCAAGAAATAAAATGATTCAT 57.909 29.630 0.00 0.00 0.00 2.57
2409 2567 8.464770 CGAAAGGCAAGAAATAAAATGATTCA 57.535 30.769 0.00 0.00 0.00 2.57
2423 2581 8.172331 AAGTTTACACTAATCCGAAAGGCAAGA 61.172 37.037 0.00 0.00 41.78 3.02
2424 2582 6.072673 AAGTTTACACTAATCCGAAAGGCAAG 60.073 38.462 0.00 0.00 41.78 4.01
2425 2583 5.766174 AAGTTTACACTAATCCGAAAGGCAA 59.234 36.000 0.00 0.00 41.78 4.52
2426 2584 5.310451 AAGTTTACACTAATCCGAAAGGCA 58.690 37.500 0.00 0.00 41.78 4.75
2427 2585 5.874895 AAGTTTACACTAATCCGAAAGGC 57.125 39.130 0.00 0.00 41.78 4.35
2531 2689 9.712305 TCCAGAAATGTTCACAAAAAGTAAAAA 57.288 25.926 0.00 0.00 0.00 1.94
2532 2690 9.883142 ATCCAGAAATGTTCACAAAAAGTAAAA 57.117 25.926 0.00 0.00 0.00 1.52
2533 2691 9.311916 CATCCAGAAATGTTCACAAAAAGTAAA 57.688 29.630 0.00 0.00 0.00 2.01
2534 2692 7.437862 GCATCCAGAAATGTTCACAAAAAGTAA 59.562 33.333 0.00 0.00 0.00 2.24
2535 2693 6.922957 GCATCCAGAAATGTTCACAAAAAGTA 59.077 34.615 0.00 0.00 0.00 2.24
2536 2694 5.754890 GCATCCAGAAATGTTCACAAAAAGT 59.245 36.000 0.00 0.00 0.00 2.66
2537 2695 5.754406 TGCATCCAGAAATGTTCACAAAAAG 59.246 36.000 0.00 0.00 0.00 2.27
2538 2696 5.668471 TGCATCCAGAAATGTTCACAAAAA 58.332 33.333 0.00 0.00 0.00 1.94
2539 2697 5.273674 TGCATCCAGAAATGTTCACAAAA 57.726 34.783 0.00 0.00 0.00 2.44
2540 2698 4.933505 TGCATCCAGAAATGTTCACAAA 57.066 36.364 0.00 0.00 0.00 2.83
2541 2699 5.471556 AATGCATCCAGAAATGTTCACAA 57.528 34.783 0.00 0.00 0.00 3.33
2542 2700 5.471556 AAATGCATCCAGAAATGTTCACA 57.528 34.783 0.00 0.00 0.00 3.58
2543 2701 6.790285 AAAAATGCATCCAGAAATGTTCAC 57.210 33.333 0.00 0.00 0.00 3.18
2563 2721 8.622948 AAGGTGTTACAAATTTCCAACAAAAA 57.377 26.923 13.16 0.00 33.04 1.94
2564 2722 8.622948 AAAGGTGTTACAAATTTCCAACAAAA 57.377 26.923 13.16 0.00 33.04 2.44
2565 2723 8.507249 CAAAAGGTGTTACAAATTTCCAACAAA 58.493 29.630 13.16 0.00 33.04 2.83
2566 2724 7.119846 CCAAAAGGTGTTACAAATTTCCAACAA 59.880 33.333 13.16 0.25 33.04 2.83
2567 2725 6.595716 CCAAAAGGTGTTACAAATTTCCAACA 59.404 34.615 9.14 9.14 0.00 3.33
2568 2726 6.037720 CCCAAAAGGTGTTACAAATTTCCAAC 59.962 38.462 0.00 5.00 0.00 3.77
2569 2727 6.070194 TCCCAAAAGGTGTTACAAATTTCCAA 60.070 34.615 0.00 0.00 36.75 3.53
2570 2728 5.425539 TCCCAAAAGGTGTTACAAATTTCCA 59.574 36.000 0.00 0.00 36.75 3.53
2571 2729 5.919755 TCCCAAAAGGTGTTACAAATTTCC 58.080 37.500 0.00 0.00 36.75 3.13
2572 2730 8.445275 AATTCCCAAAAGGTGTTACAAATTTC 57.555 30.769 0.00 0.00 36.75 2.17
2573 2731 8.815565 AAATTCCCAAAAGGTGTTACAAATTT 57.184 26.923 0.00 0.00 36.75 1.82
2574 2732 8.681806 CAAAATTCCCAAAAGGTGTTACAAATT 58.318 29.630 0.00 0.00 36.75 1.82
2575 2733 8.049721 TCAAAATTCCCAAAAGGTGTTACAAAT 58.950 29.630 0.00 0.00 36.75 2.32
2576 2734 7.334671 GTCAAAATTCCCAAAAGGTGTTACAAA 59.665 33.333 0.00 0.00 36.75 2.83
2577 2735 6.819146 GTCAAAATTCCCAAAAGGTGTTACAA 59.181 34.615 0.00 0.00 36.75 2.41
2578 2736 6.342111 GTCAAAATTCCCAAAAGGTGTTACA 58.658 36.000 0.00 0.00 36.75 2.41
2579 2737 5.756347 GGTCAAAATTCCCAAAAGGTGTTAC 59.244 40.000 0.00 0.00 36.75 2.50
2580 2738 5.425539 TGGTCAAAATTCCCAAAAGGTGTTA 59.574 36.000 0.00 0.00 36.75 2.41
2581 2739 4.226168 TGGTCAAAATTCCCAAAAGGTGTT 59.774 37.500 0.00 0.00 36.75 3.32
2582 2740 3.777522 TGGTCAAAATTCCCAAAAGGTGT 59.222 39.130 0.00 0.00 36.75 4.16
2583 2741 4.141733 ACTGGTCAAAATTCCCAAAAGGTG 60.142 41.667 0.00 0.00 36.75 4.00
2584 2742 4.037222 ACTGGTCAAAATTCCCAAAAGGT 58.963 39.130 0.00 0.00 36.75 3.50
2585 2743 4.687901 ACTGGTCAAAATTCCCAAAAGG 57.312 40.909 0.00 0.00 0.00 3.11
2586 2744 6.348498 AGAAACTGGTCAAAATTCCCAAAAG 58.652 36.000 0.00 0.00 0.00 2.27
2587 2745 6.306643 AGAAACTGGTCAAAATTCCCAAAA 57.693 33.333 0.00 0.00 0.00 2.44
2588 2746 5.948742 AGAAACTGGTCAAAATTCCCAAA 57.051 34.783 0.00 0.00 0.00 3.28
2589 2747 7.343316 TCTTTAGAAACTGGTCAAAATTCCCAA 59.657 33.333 0.00 0.00 0.00 4.12
2590 2748 6.836527 TCTTTAGAAACTGGTCAAAATTCCCA 59.163 34.615 0.00 0.00 0.00 4.37
2591 2749 7.014326 ACTCTTTAGAAACTGGTCAAAATTCCC 59.986 37.037 0.00 0.00 0.00 3.97
2592 2750 7.862873 CACTCTTTAGAAACTGGTCAAAATTCC 59.137 37.037 0.00 0.00 0.00 3.01
2593 2751 8.406297 ACACTCTTTAGAAACTGGTCAAAATTC 58.594 33.333 0.00 0.00 0.00 2.17
2594 2752 8.293699 ACACTCTTTAGAAACTGGTCAAAATT 57.706 30.769 0.00 0.00 0.00 1.82
2595 2753 7.881775 ACACTCTTTAGAAACTGGTCAAAAT 57.118 32.000 0.00 0.00 0.00 1.82
2596 2754 7.696992 AACACTCTTTAGAAACTGGTCAAAA 57.303 32.000 0.00 0.00 0.00 2.44
2597 2755 7.696992 AAACACTCTTTAGAAACTGGTCAAA 57.303 32.000 0.00 0.00 0.00 2.69
2598 2756 8.974060 ATAAACACTCTTTAGAAACTGGTCAA 57.026 30.769 0.00 0.00 0.00 3.18
2599 2757 9.485206 GTATAAACACTCTTTAGAAACTGGTCA 57.515 33.333 0.00 0.00 0.00 4.02
2600 2758 9.485206 TGTATAAACACTCTTTAGAAACTGGTC 57.515 33.333 0.00 0.00 0.00 4.02
2672 2830 9.804758 ACCAAACAACAAACTTTATCGAAAATA 57.195 25.926 0.00 0.00 0.00 1.40
2673 2831 8.710835 ACCAAACAACAAACTTTATCGAAAAT 57.289 26.923 0.00 0.00 0.00 1.82
2674 2832 9.804758 ATACCAAACAACAAACTTTATCGAAAA 57.195 25.926 0.00 0.00 0.00 2.29
2675 2833 9.804758 AATACCAAACAACAAACTTTATCGAAA 57.195 25.926 0.00 0.00 0.00 3.46
2676 2834 9.453325 GAATACCAAACAACAAACTTTATCGAA 57.547 29.630 0.00 0.00 0.00 3.71
2677 2835 8.077386 GGAATACCAAACAACAAACTTTATCGA 58.923 33.333 0.00 0.00 35.97 3.59
2678 2836 8.079809 AGGAATACCAAACAACAAACTTTATCG 58.920 33.333 0.00 0.00 38.94 2.92
2679 2837 9.406828 GAGGAATACCAAACAACAAACTTTATC 57.593 33.333 0.00 0.00 38.94 1.75
2680 2838 9.143155 AGAGGAATACCAAACAACAAACTTTAT 57.857 29.630 0.00 0.00 38.94 1.40
2681 2839 8.528044 AGAGGAATACCAAACAACAAACTTTA 57.472 30.769 0.00 0.00 38.94 1.85
2682 2840 7.418337 AGAGGAATACCAAACAACAAACTTT 57.582 32.000 0.00 0.00 38.94 2.66
2683 2841 7.418337 AAGAGGAATACCAAACAACAAACTT 57.582 32.000 0.00 0.00 38.94 2.66
2684 2842 7.093509 ACAAAGAGGAATACCAAACAACAAACT 60.094 33.333 0.00 0.00 38.94 2.66
2685 2843 7.010091 CACAAAGAGGAATACCAAACAACAAAC 59.990 37.037 0.00 0.00 38.94 2.93
2686 2844 7.038659 CACAAAGAGGAATACCAAACAACAAA 58.961 34.615 0.00 0.00 38.94 2.83
2687 2845 6.406400 CCACAAAGAGGAATACCAAACAACAA 60.406 38.462 0.00 0.00 38.94 2.83
2688 2846 5.068460 CCACAAAGAGGAATACCAAACAACA 59.932 40.000 0.00 0.00 38.94 3.33
2689 2847 5.068591 ACCACAAAGAGGAATACCAAACAAC 59.931 40.000 0.00 0.00 38.94 3.32
2690 2848 5.205056 ACCACAAAGAGGAATACCAAACAA 58.795 37.500 0.00 0.00 38.94 2.83
2691 2849 4.798882 ACCACAAAGAGGAATACCAAACA 58.201 39.130 0.00 0.00 38.94 2.83
2692 2850 5.535030 AGAACCACAAAGAGGAATACCAAAC 59.465 40.000 0.00 0.00 38.94 2.93
2693 2851 5.701224 AGAACCACAAAGAGGAATACCAAA 58.299 37.500 0.00 0.00 38.94 3.28
2694 2852 5.319043 AGAACCACAAAGAGGAATACCAA 57.681 39.130 0.00 0.00 38.94 3.67
2695 2853 4.993705 AGAACCACAAAGAGGAATACCA 57.006 40.909 0.00 0.00 38.94 3.25
2696 2854 5.070685 ACAAGAACCACAAAGAGGAATACC 58.929 41.667 0.00 0.00 0.00 2.73
2697 2855 5.107065 CGACAAGAACCACAAAGAGGAATAC 60.107 44.000 0.00 0.00 0.00 1.89
2698 2856 4.994852 CGACAAGAACCACAAAGAGGAATA 59.005 41.667 0.00 0.00 0.00 1.75
2699 2857 3.815401 CGACAAGAACCACAAAGAGGAAT 59.185 43.478 0.00 0.00 0.00 3.01
2700 2858 3.202906 CGACAAGAACCACAAAGAGGAA 58.797 45.455 0.00 0.00 0.00 3.36
2701 2859 2.833794 CGACAAGAACCACAAAGAGGA 58.166 47.619 0.00 0.00 0.00 3.71
2702 2860 1.264288 GCGACAAGAACCACAAAGAGG 59.736 52.381 0.00 0.00 0.00 3.69
2703 2861 1.939934 TGCGACAAGAACCACAAAGAG 59.060 47.619 0.00 0.00 0.00 2.85
2704 2862 1.668751 GTGCGACAAGAACCACAAAGA 59.331 47.619 0.00 0.00 0.00 2.52
2705 2863 1.670811 AGTGCGACAAGAACCACAAAG 59.329 47.619 0.00 0.00 0.00 2.77
2706 2864 1.668751 GAGTGCGACAAGAACCACAAA 59.331 47.619 0.00 0.00 0.00 2.83
2707 2865 1.295792 GAGTGCGACAAGAACCACAA 58.704 50.000 0.00 0.00 0.00 3.33
2708 2866 0.874175 CGAGTGCGACAAGAACCACA 60.874 55.000 0.00 0.00 40.82 4.17
2709 2867 1.853319 CGAGTGCGACAAGAACCAC 59.147 57.895 0.00 0.00 40.82 4.16
2710 2868 1.954146 GCGAGTGCGACAAGAACCA 60.954 57.895 0.00 0.00 40.82 3.67
2711 2869 2.853914 GCGAGTGCGACAAGAACC 59.146 61.111 0.00 0.00 40.82 3.62
2722 2880 1.227205 GATGAGAGGGCAGCGAGTG 60.227 63.158 0.00 0.00 0.00 3.51
2723 2881 1.381056 AGATGAGAGGGCAGCGAGT 60.381 57.895 0.00 0.00 0.00 4.18
2724 2882 1.108727 AGAGATGAGAGGGCAGCGAG 61.109 60.000 0.00 0.00 0.00 5.03
2725 2883 1.076412 AGAGATGAGAGGGCAGCGA 60.076 57.895 0.00 0.00 0.00 4.93
2726 2884 1.108727 AGAGAGATGAGAGGGCAGCG 61.109 60.000 0.00 0.00 0.00 5.18
2727 2885 0.390124 CAGAGAGATGAGAGGGCAGC 59.610 60.000 0.00 0.00 0.00 5.25
2728 2886 1.779221 ACAGAGAGATGAGAGGGCAG 58.221 55.000 0.00 0.00 0.00 4.85
2729 2887 2.244486 AACAGAGAGATGAGAGGGCA 57.756 50.000 0.00 0.00 0.00 5.36
2730 2888 3.530535 GAAAACAGAGAGATGAGAGGGC 58.469 50.000 0.00 0.00 0.00 5.19
2731 2889 3.517100 TGGAAAACAGAGAGATGAGAGGG 59.483 47.826 0.00 0.00 0.00 4.30
2732 2890 4.502962 GTGGAAAACAGAGAGATGAGAGG 58.497 47.826 0.00 0.00 0.00 3.69
2733 2891 4.020751 TGGTGGAAAACAGAGAGATGAGAG 60.021 45.833 0.00 0.00 0.00 3.20
2734 2892 3.903714 TGGTGGAAAACAGAGAGATGAGA 59.096 43.478 0.00 0.00 0.00 3.27
2735 2893 3.999663 GTGGTGGAAAACAGAGAGATGAG 59.000 47.826 0.00 0.00 0.00 2.90
2736 2894 3.390967 TGTGGTGGAAAACAGAGAGATGA 59.609 43.478 0.00 0.00 0.00 2.92
2737 2895 3.743521 TGTGGTGGAAAACAGAGAGATG 58.256 45.455 0.00 0.00 0.00 2.90
2738 2896 3.648067 TCTGTGGTGGAAAACAGAGAGAT 59.352 43.478 1.50 0.00 45.97 2.75
2739 2897 3.038280 TCTGTGGTGGAAAACAGAGAGA 58.962 45.455 1.50 0.00 45.97 3.10
2740 2898 3.475566 TCTGTGGTGGAAAACAGAGAG 57.524 47.619 1.50 0.00 45.97 3.20
2744 2902 3.303990 CGTTGATCTGTGGTGGAAAACAG 60.304 47.826 0.00 0.00 44.23 3.16
2745 2903 2.616376 CGTTGATCTGTGGTGGAAAACA 59.384 45.455 0.00 0.00 0.00 2.83
2746 2904 2.604614 GCGTTGATCTGTGGTGGAAAAC 60.605 50.000 0.00 0.00 0.00 2.43
2747 2905 1.606668 GCGTTGATCTGTGGTGGAAAA 59.393 47.619 0.00 0.00 0.00 2.29
2748 2906 1.234821 GCGTTGATCTGTGGTGGAAA 58.765 50.000 0.00 0.00 0.00 3.13
2749 2907 0.605319 GGCGTTGATCTGTGGTGGAA 60.605 55.000 0.00 0.00 0.00 3.53
2750 2908 1.003839 GGCGTTGATCTGTGGTGGA 60.004 57.895 0.00 0.00 0.00 4.02
2751 2909 0.677731 ATGGCGTTGATCTGTGGTGG 60.678 55.000 0.00 0.00 0.00 4.61
2752 2910 0.448990 CATGGCGTTGATCTGTGGTG 59.551 55.000 0.00 0.00 0.00 4.17
2753 2911 0.677731 CCATGGCGTTGATCTGTGGT 60.678 55.000 0.00 0.00 0.00 4.16
2754 2912 0.392863 TCCATGGCGTTGATCTGTGG 60.393 55.000 6.96 0.00 0.00 4.17
2755 2913 1.332686 CATCCATGGCGTTGATCTGTG 59.667 52.381 6.96 0.00 0.00 3.66
2756 2914 1.065199 ACATCCATGGCGTTGATCTGT 60.065 47.619 6.96 0.00 0.00 3.41
2757 2915 1.671979 ACATCCATGGCGTTGATCTG 58.328 50.000 6.96 0.00 0.00 2.90
2758 2916 2.019249 CAACATCCATGGCGTTGATCT 58.981 47.619 29.18 5.53 42.03 2.75
2759 2917 2.016318 TCAACATCCATGGCGTTGATC 58.984 47.619 30.49 0.00 42.95 2.92
2760 2918 2.019249 CTCAACATCCATGGCGTTGAT 58.981 47.619 32.45 14.73 45.71 2.57
2761 2919 1.452110 CTCAACATCCATGGCGTTGA 58.548 50.000 31.24 31.24 44.95 3.18
2762 2920 0.179156 GCTCAACATCCATGGCGTTG 60.179 55.000 28.02 28.02 41.07 4.10
2763 2921 1.315257 GGCTCAACATCCATGGCGTT 61.315 55.000 6.96 10.23 0.00 4.84
2764 2922 1.750399 GGCTCAACATCCATGGCGT 60.750 57.895 6.96 3.53 0.00 5.68
2765 2923 2.827051 CGGCTCAACATCCATGGCG 61.827 63.158 6.96 2.78 39.98 5.69
2766 2924 0.820891 ATCGGCTCAACATCCATGGC 60.821 55.000 6.96 0.00 0.00 4.40
2767 2925 0.949397 CATCGGCTCAACATCCATGG 59.051 55.000 4.97 4.97 0.00 3.66
2768 2926 0.309922 GCATCGGCTCAACATCCATG 59.690 55.000 0.00 0.00 36.96 3.66
2769 2927 2.711711 GCATCGGCTCAACATCCAT 58.288 52.632 0.00 0.00 36.96 3.41
2770 2928 4.223800 GCATCGGCTCAACATCCA 57.776 55.556 0.00 0.00 36.96 3.41
2781 2939 4.899239 GGCGGAGGTGAGCATCGG 62.899 72.222 0.00 0.00 38.61 4.18
2782 2940 3.781770 GAGGCGGAGGTGAGCATCG 62.782 68.421 0.00 0.00 38.61 3.84
2783 2941 2.107953 GAGGCGGAGGTGAGCATC 59.892 66.667 0.00 0.00 37.02 3.91
2784 2942 2.685017 TGAGGCGGAGGTGAGCAT 60.685 61.111 0.00 0.00 34.54 3.79
2785 2943 3.695606 GTGAGGCGGAGGTGAGCA 61.696 66.667 0.00 0.00 34.54 4.26
2786 2944 4.803426 CGTGAGGCGGAGGTGAGC 62.803 72.222 0.00 0.00 36.85 4.26
2787 2945 4.803426 GCGTGAGGCGGAGGTGAG 62.803 72.222 0.00 0.00 41.69 3.51
2798 2956 4.379243 AGCCACCGGAAGCGTGAG 62.379 66.667 9.46 0.00 35.26 3.51
2799 2957 4.680237 CAGCCACCGGAAGCGTGA 62.680 66.667 9.46 0.00 35.26 4.35
2818 2976 4.265056 GGTGGAGGGCACAACGGT 62.265 66.667 0.00 0.00 0.00 4.83
2820 2978 3.953775 AGGGTGGAGGGCACAACG 61.954 66.667 0.00 0.00 0.00 4.10
2821 2979 2.282462 CAGGGTGGAGGGCACAAC 60.282 66.667 0.00 0.00 0.00 3.32
2822 2980 3.579302 CCAGGGTGGAGGGCACAA 61.579 66.667 0.00 0.00 40.96 3.33
2832 2990 4.910585 GATACGGCGGCCAGGGTG 62.911 72.222 20.71 4.43 0.00 4.61
2834 2992 3.476031 ATTGATACGGCGGCCAGGG 62.476 63.158 20.71 5.25 0.00 4.45
2835 2993 2.111043 ATTGATACGGCGGCCAGG 59.889 61.111 20.71 6.06 0.00 4.45
2836 2994 2.253758 CCATTGATACGGCGGCCAG 61.254 63.158 20.71 14.11 0.00 4.85
2837 2995 2.203139 CCATTGATACGGCGGCCA 60.203 61.111 20.71 0.00 0.00 5.36
2838 2996 2.978010 CCCATTGATACGGCGGCC 60.978 66.667 13.24 9.54 0.00 6.13
2839 2997 2.978010 CCCCATTGATACGGCGGC 60.978 66.667 13.24 0.00 0.00 6.53
2840 2998 2.978010 GCCCCATTGATACGGCGG 60.978 66.667 13.24 0.00 0.00 6.13
2841 2999 2.958578 AAGGCCCCATTGATACGGCG 62.959 60.000 4.80 4.80 42.59 6.46
2842 3000 1.152756 AAGGCCCCATTGATACGGC 60.153 57.895 0.00 0.00 40.85 5.68
2843 3001 1.455383 GCAAGGCCCCATTGATACGG 61.455 60.000 7.37 0.00 0.00 4.02
2844 3002 0.751277 TGCAAGGCCCCATTGATACG 60.751 55.000 7.37 0.00 0.00 3.06
2845 3003 1.342174 CATGCAAGGCCCCATTGATAC 59.658 52.381 7.37 0.00 0.00 2.24
2846 3004 1.707106 CATGCAAGGCCCCATTGATA 58.293 50.000 7.37 0.00 0.00 2.15
2847 3005 1.052124 CCATGCAAGGCCCCATTGAT 61.052 55.000 7.37 0.00 0.00 2.57
2848 3006 1.686455 CCATGCAAGGCCCCATTGA 60.686 57.895 7.37 0.00 0.00 2.57
2849 3007 2.904905 CCATGCAAGGCCCCATTG 59.095 61.111 0.00 0.00 0.00 2.82
2857 3015 0.324091 AAAGAGGGAGCCATGCAAGG 60.324 55.000 2.86 2.86 0.00 3.61
2858 3016 0.815734 CAAAGAGGGAGCCATGCAAG 59.184 55.000 0.00 0.00 0.00 4.01
2859 3017 0.112995 ACAAAGAGGGAGCCATGCAA 59.887 50.000 0.00 0.00 0.00 4.08
2860 3018 0.322816 GACAAAGAGGGAGCCATGCA 60.323 55.000 0.00 0.00 0.00 3.96
2861 3019 0.034670 AGACAAAGAGGGAGCCATGC 60.035 55.000 0.00 0.00 0.00 4.06
2862 3020 1.741732 CGAGACAAAGAGGGAGCCATG 60.742 57.143 0.00 0.00 0.00 3.66
2863 3021 0.539051 CGAGACAAAGAGGGAGCCAT 59.461 55.000 0.00 0.00 0.00 4.40
2864 3022 0.832135 ACGAGACAAAGAGGGAGCCA 60.832 55.000 0.00 0.00 0.00 4.75
2865 3023 0.321996 AACGAGACAAAGAGGGAGCC 59.678 55.000 0.00 0.00 0.00 4.70
2866 3024 2.070028 GAAACGAGACAAAGAGGGAGC 58.930 52.381 0.00 0.00 0.00 4.70
2867 3025 2.613223 GGGAAACGAGACAAAGAGGGAG 60.613 54.545 0.00 0.00 0.00 4.30
2868 3026 1.346722 GGGAAACGAGACAAAGAGGGA 59.653 52.381 0.00 0.00 0.00 4.20
2869 3027 1.348036 AGGGAAACGAGACAAAGAGGG 59.652 52.381 0.00 0.00 0.00 4.30
2870 3028 2.689646 GAGGGAAACGAGACAAAGAGG 58.310 52.381 0.00 0.00 0.00 3.69
2871 3029 2.329379 CGAGGGAAACGAGACAAAGAG 58.671 52.381 0.00 0.00 0.00 2.85
2872 3030 1.604693 GCGAGGGAAACGAGACAAAGA 60.605 52.381 0.00 0.00 0.00 2.52
2873 3031 0.790814 GCGAGGGAAACGAGACAAAG 59.209 55.000 0.00 0.00 0.00 2.77
2874 3032 0.105224 TGCGAGGGAAACGAGACAAA 59.895 50.000 0.00 0.00 0.00 2.83
2875 3033 0.599204 GTGCGAGGGAAACGAGACAA 60.599 55.000 0.00 0.00 0.00 3.18
2876 3034 1.006571 GTGCGAGGGAAACGAGACA 60.007 57.895 0.00 0.00 0.00 3.41
2877 3035 2.087009 CGTGCGAGGGAAACGAGAC 61.087 63.158 0.00 0.00 39.64 3.36
2878 3036 2.257371 CGTGCGAGGGAAACGAGA 59.743 61.111 0.00 0.00 39.64 4.04
2879 3037 3.479269 GCGTGCGAGGGAAACGAG 61.479 66.667 0.00 0.00 39.64 4.18
2882 3040 3.119096 GAGGCGTGCGAGGGAAAC 61.119 66.667 0.00 0.00 0.00 2.78
2883 3041 4.388499 GGAGGCGTGCGAGGGAAA 62.388 66.667 0.00 0.00 0.00 3.13
2900 3058 1.299165 CGGTTGGATCCTACGCGAG 60.299 63.158 22.74 5.77 0.00 5.03
2901 3059 2.048023 ACGGTTGGATCCTACGCGA 61.048 57.895 29.00 4.05 0.00 5.87
2902 3060 1.876714 CACGGTTGGATCCTACGCG 60.877 63.158 24.25 24.25 0.00 6.01
2903 3061 4.104143 CACGGTTGGATCCTACGC 57.896 61.111 18.34 11.26 0.00 4.42
2932 3090 2.380410 CCACACGACGGCTACTTGC 61.380 63.158 0.00 0.00 41.94 4.01
2933 3091 1.006571 ACCACACGACGGCTACTTG 60.007 57.895 0.00 0.00 0.00 3.16
2934 3092 1.006571 CACCACACGACGGCTACTT 60.007 57.895 0.00 0.00 0.00 2.24
2935 3093 2.649034 CACCACACGACGGCTACT 59.351 61.111 0.00 0.00 0.00 2.57
2936 3094 3.110178 GCACCACACGACGGCTAC 61.110 66.667 0.00 0.00 0.00 3.58
2937 3095 4.367023 GGCACCACACGACGGCTA 62.367 66.667 0.00 0.00 0.00 3.93
2951 3109 2.661840 TAAACACGACGGCAAGGGCA 62.662 55.000 0.00 0.00 43.71 5.36
2952 3110 1.508808 TTAAACACGACGGCAAGGGC 61.509 55.000 0.00 0.00 40.13 5.19
2953 3111 0.236449 GTTAAACACGACGGCAAGGG 59.764 55.000 0.00 0.00 0.00 3.95
2954 3112 0.938713 TGTTAAACACGACGGCAAGG 59.061 50.000 0.00 0.00 0.00 3.61
2955 3113 2.961522 ATGTTAAACACGACGGCAAG 57.038 45.000 0.00 0.00 0.00 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.