Multiple sequence alignment - TraesCS7D01G172700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G172700 chr7D 100.000 2291 0 0 1 2291 124645154 124642864 0.000000e+00 4231.0
1 TraesCS7D01G172700 chr7D 89.444 900 54 25 433 1301 124833651 124832762 0.000000e+00 1098.0
2 TraesCS7D01G172700 chr7D 87.487 951 62 28 386 1306 124831107 124830184 0.000000e+00 1044.0
3 TraesCS7D01G172700 chr7D 88.889 846 54 20 402 1242 124604662 124603852 0.000000e+00 1005.0
4 TraesCS7D01G172700 chr7D 91.161 577 49 2 1547 2123 92727206 92727780 0.000000e+00 782.0
5 TraesCS7D01G172700 chr7D 95.608 296 13 0 996 1291 124594703 124594408 2.060000e-130 475.0
6 TraesCS7D01G172700 chr7D 94.737 304 16 0 1003 1306 124650654 124650351 7.410000e-130 473.0
7 TraesCS7D01G172700 chr7D 86.076 395 30 17 609 996 124661820 124661444 3.550000e-108 401.0
8 TraesCS7D01G172700 chr7D 86.740 362 33 5 13 368 124605254 124604902 2.760000e-104 388.0
9 TraesCS7D01G172700 chr7D 88.000 300 18 7 108 401 124831440 124831153 2.820000e-89 339.0
10 TraesCS7D01G172700 chr7D 83.377 379 36 17 53 414 124663669 124663301 2.190000e-85 326.0
11 TraesCS7D01G172700 chr7D 87.347 245 20 5 129 368 124834588 124834350 1.040000e-68 270.0
12 TraesCS7D01G172700 chr7D 87.755 98 11 1 13 109 124831751 124831654 1.860000e-21 113.0
13 TraesCS7D01G172700 chr7D 97.959 49 1 0 1302 1350 124830116 124830068 4.060000e-13 86.1
14 TraesCS7D01G172700 chr7D 96.000 50 2 0 1300 1349 124650307 124650258 5.250000e-12 82.4
15 TraesCS7D01G172700 chr7D 94.000 50 3 0 1300 1349 124832660 124832611 2.440000e-10 76.8
16 TraesCS7D01G172700 chr7D 97.297 37 1 0 1314 1350 124596345 124596309 1.900000e-06 63.9
17 TraesCS7D01G172700 chr7B 91.481 810 44 10 511 1306 86637778 86636980 0.000000e+00 1090.0
18 TraesCS7D01G172700 chr7B 87.065 920 57 30 402 1306 86648739 86647867 0.000000e+00 983.0
19 TraesCS7D01G172700 chr7B 91.522 578 47 2 1547 2123 742703495 742704071 0.000000e+00 795.0
20 TraesCS7D01G172700 chr7B 91.034 580 49 3 1546 2123 399256282 399255704 0.000000e+00 780.0
21 TraesCS7D01G172700 chr7B 86.446 332 28 9 13 338 86650875 86650555 4.680000e-92 348.0
22 TraesCS7D01G172700 chr7B 86.333 300 17 7 108 401 86639947 86639666 2.860000e-79 305.0
23 TraesCS7D01G172700 chr7B 91.463 82 5 2 322 401 86648867 86648786 6.690000e-21 111.0
24 TraesCS7D01G172700 chr3D 93.945 578 34 1 1547 2123 64693242 64692665 0.000000e+00 872.0
25 TraesCS7D01G172700 chr3D 91.176 578 50 1 1546 2123 253572897 253573473 0.000000e+00 784.0
26 TraesCS7D01G172700 chr2B 91.869 578 47 0 1546 2123 36450110 36449533 0.000000e+00 808.0
27 TraesCS7D01G172700 chr1A 91.552 580 47 1 1546 2123 146633893 146633314 0.000000e+00 798.0
28 TraesCS7D01G172700 chr1A 91.192 579 49 2 1546 2123 507563363 507563940 0.000000e+00 785.0
29 TraesCS7D01G172700 chr1A 88.360 189 22 0 1359 1547 147673128 147673316 6.370000e-56 228.0
30 TraesCS7D01G172700 chr7A 87.260 730 53 14 132 844 127039888 127039182 0.000000e+00 797.0
31 TraesCS7D01G172700 chr7A 88.525 549 33 15 784 1307 127042225 127041682 2.480000e-179 638.0
32 TraesCS7D01G172700 chr7A 96.024 327 13 0 979 1305 127003646 127003320 1.200000e-147 532.0
33 TraesCS7D01G172700 chr7A 86.885 488 44 10 402 885 127004141 127003670 1.560000e-146 529.0
34 TraesCS7D01G172700 chr7A 97.643 297 7 0 995 1291 127001559 127001263 5.650000e-141 510.0
35 TraesCS7D01G172700 chr7A 85.714 378 28 12 13 368 127043383 127043010 2.150000e-100 375.0
36 TraesCS7D01G172700 chr7A 93.827 81 5 0 1226 1306 127038717 127038637 3.090000e-24 122.0
37 TraesCS7D01G172700 chr7A 77.232 224 40 8 619 832 127001921 127001699 1.110000e-23 121.0
38 TraesCS7D01G172700 chr7A 94.118 51 3 0 1300 1350 127038580 127038530 6.790000e-11 78.7
39 TraesCS7D01G172700 chr7A 95.455 44 2 0 1306 1349 127041228 127041185 1.140000e-08 71.3
40 TraesCS7D01G172700 chr7A 97.222 36 0 1 1315 1350 127041640 127041606 2.460000e-05 60.2
41 TraesCS7D01G172700 chr5B 91.176 578 49 2 1546 2123 678148441 678149016 0.000000e+00 784.0
42 TraesCS7D01G172700 chr1D 88.710 186 19 2 1359 1543 449842166 449842350 2.290000e-55 226.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G172700 chr7D 124642864 124645154 2290 True 4231.000000 4231 100.000000 1 2291 1 chr7D.!!$R1 2290
1 TraesCS7D01G172700 chr7D 92727206 92727780 574 False 782.000000 782 91.161000 1547 2123 1 chr7D.!!$F1 576
2 TraesCS7D01G172700 chr7D 124603852 124605254 1402 True 696.500000 1005 87.814500 13 1242 2 chr7D.!!$R3 1229
3 TraesCS7D01G172700 chr7D 124830068 124834588 4520 True 432.414286 1098 90.284571 13 1350 7 chr7D.!!$R6 1337
4 TraesCS7D01G172700 chr7D 124661444 124663669 2225 True 363.500000 401 84.726500 53 996 2 chr7D.!!$R5 943
5 TraesCS7D01G172700 chr7D 124594408 124596345 1937 True 269.450000 475 96.452500 996 1350 2 chr7D.!!$R2 354
6 TraesCS7D01G172700 chr7B 742703495 742704071 576 False 795.000000 795 91.522000 1547 2123 1 chr7B.!!$F1 576
7 TraesCS7D01G172700 chr7B 399255704 399256282 578 True 780.000000 780 91.034000 1546 2123 1 chr7B.!!$R1 577
8 TraesCS7D01G172700 chr7B 86636980 86639947 2967 True 697.500000 1090 88.907000 108 1306 2 chr7B.!!$R2 1198
9 TraesCS7D01G172700 chr7B 86647867 86650875 3008 True 480.666667 983 88.324667 13 1306 3 chr7B.!!$R3 1293
10 TraesCS7D01G172700 chr3D 64692665 64693242 577 True 872.000000 872 93.945000 1547 2123 1 chr3D.!!$R1 576
11 TraesCS7D01G172700 chr3D 253572897 253573473 576 False 784.000000 784 91.176000 1546 2123 1 chr3D.!!$F1 577
12 TraesCS7D01G172700 chr2B 36449533 36450110 577 True 808.000000 808 91.869000 1546 2123 1 chr2B.!!$R1 577
13 TraesCS7D01G172700 chr1A 146633314 146633893 579 True 798.000000 798 91.552000 1546 2123 1 chr1A.!!$R1 577
14 TraesCS7D01G172700 chr1A 507563363 507563940 577 False 785.000000 785 91.192000 1546 2123 1 chr1A.!!$F2 577
15 TraesCS7D01G172700 chr7A 127001263 127004141 2878 True 423.000000 532 89.446000 402 1305 4 chr7A.!!$R1 903
16 TraesCS7D01G172700 chr7A 127038530 127043383 4853 True 306.028571 797 91.731571 13 1350 7 chr7A.!!$R2 1337
17 TraesCS7D01G172700 chr5B 678148441 678149016 575 False 784.000000 784 91.176000 1546 2123 1 chr5B.!!$F1 577

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
902 9028 0.322648 CAGTCATCACCCAGCTCACA 59.677 55.0 0.0 0.0 0.0 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2193 15518 0.103208 GACGCCTATCCTCACACCAG 59.897 60.0 0.0 0.0 0.0 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 8.855110 GCTATCTATATCTTAGCTGCCTTATGA 58.145 37.037 0.00 0.00 36.31 2.15
70 71 5.964758 TGCCTAAAATATTTGAGGTTGCTG 58.035 37.500 26.34 6.65 40.42 4.41
72 73 6.036470 GCCTAAAATATTTGAGGTTGCTGAC 58.964 40.000 26.34 9.54 40.42 3.51
90 91 9.423061 GTTGCTGACCATTAAATTTAATGTTCT 57.577 29.630 31.60 21.64 45.29 3.01
93 94 9.423061 GCTGACCATTAAATTTAATGTTCTGTT 57.577 29.630 31.96 19.37 45.29 3.16
117 122 1.415659 AGCTGCCACCTATAGCTCAAG 59.584 52.381 0.00 0.00 43.90 3.02
127 132 5.238868 CACCTATAGCTCAAGTACGCTTCTA 59.761 44.000 0.00 0.00 37.68 2.10
128 133 5.239087 ACCTATAGCTCAAGTACGCTTCTAC 59.761 44.000 0.00 0.00 37.68 2.59
130 135 3.768468 AGCTCAAGTACGCTTCTACTC 57.232 47.619 0.00 0.00 31.17 2.59
193 218 5.979517 CCAAAAAGCCAAGTTTTGAGTAGAG 59.020 40.000 10.40 0.00 44.94 2.43
232 269 4.488126 ACTGTGACAATCAATCAAACGG 57.512 40.909 0.00 0.00 0.00 4.44
317 359 1.576356 TGGGCATTTTTCGCAACAAC 58.424 45.000 0.00 0.00 0.00 3.32
318 360 1.134699 TGGGCATTTTTCGCAACAACA 60.135 42.857 0.00 0.00 0.00 3.33
319 361 1.936547 GGGCATTTTTCGCAACAACAA 59.063 42.857 0.00 0.00 0.00 2.83
320 362 2.286125 GGGCATTTTTCGCAACAACAAC 60.286 45.455 0.00 0.00 0.00 3.32
437 3151 4.448363 AAGTACTGAACGCGAAAAGTTC 57.552 40.909 15.93 6.24 45.85 3.01
458 3172 8.842358 AGTTCTCTTTTACATTACCGATTGAA 57.158 30.769 0.00 0.00 0.00 2.69
460 3174 8.718734 GTTCTCTTTTACATTACCGATTGAAGT 58.281 33.333 0.00 0.00 0.00 3.01
483 3200 2.627699 TGAAAAGGGTTTAGCCAAGCAG 59.372 45.455 0.26 0.00 39.65 4.24
486 3203 0.482887 AGGGTTTAGCCAAGCAGGTT 59.517 50.000 0.26 0.00 40.61 3.50
617 5963 5.454736 TGTCGATTCTCAACATTTGATCG 57.545 39.130 0.00 4.70 39.66 3.69
629 5979 5.168647 ACATTTGATCGTACAACCCCTTA 57.831 39.130 0.00 0.00 0.00 2.69
686 6039 5.357878 TCGCCTAACCGTTCTCTAAAGAATA 59.642 40.000 0.00 0.00 43.26 1.75
731 8675 2.042639 CCCCAGCCAAATCCCCTG 60.043 66.667 0.00 0.00 0.00 4.45
861 8980 3.441222 CCACCGTATATATAGCACCGTGA 59.559 47.826 1.65 0.00 0.00 4.35
885 9011 1.579698 CCGCTCAACATCCTCATCAG 58.420 55.000 0.00 0.00 0.00 2.90
886 9012 1.134580 CCGCTCAACATCCTCATCAGT 60.135 52.381 0.00 0.00 0.00 3.41
887 9013 2.200067 CGCTCAACATCCTCATCAGTC 58.800 52.381 0.00 0.00 0.00 3.51
888 9014 2.417787 CGCTCAACATCCTCATCAGTCA 60.418 50.000 0.00 0.00 0.00 3.41
890 9016 3.808726 GCTCAACATCCTCATCAGTCATC 59.191 47.826 0.00 0.00 0.00 2.92
891 9017 4.682589 GCTCAACATCCTCATCAGTCATCA 60.683 45.833 0.00 0.00 0.00 3.07
892 9018 4.763073 TCAACATCCTCATCAGTCATCAC 58.237 43.478 0.00 0.00 0.00 3.06
893 9019 3.834489 ACATCCTCATCAGTCATCACC 57.166 47.619 0.00 0.00 0.00 4.02
894 9020 2.437281 ACATCCTCATCAGTCATCACCC 59.563 50.000 0.00 0.00 0.00 4.61
895 9021 2.252535 TCCTCATCAGTCATCACCCA 57.747 50.000 0.00 0.00 0.00 4.51
896 9022 2.113807 TCCTCATCAGTCATCACCCAG 58.886 52.381 0.00 0.00 0.00 4.45
897 9023 1.474677 CCTCATCAGTCATCACCCAGC 60.475 57.143 0.00 0.00 0.00 4.85
898 9024 1.485480 CTCATCAGTCATCACCCAGCT 59.515 52.381 0.00 0.00 0.00 4.24
899 9025 1.483827 TCATCAGTCATCACCCAGCTC 59.516 52.381 0.00 0.00 0.00 4.09
900 9026 1.208776 CATCAGTCATCACCCAGCTCA 59.791 52.381 0.00 0.00 0.00 4.26
901 9027 0.610174 TCAGTCATCACCCAGCTCAC 59.390 55.000 0.00 0.00 0.00 3.51
902 9028 0.322648 CAGTCATCACCCAGCTCACA 59.677 55.000 0.00 0.00 0.00 3.58
903 9029 0.612229 AGTCATCACCCAGCTCACAG 59.388 55.000 0.00 0.00 0.00 3.66
904 9030 1.023513 GTCATCACCCAGCTCACAGC 61.024 60.000 0.00 0.00 42.84 4.40
938 11118 1.413812 TCACACAGAGAGAAGCAGCAA 59.586 47.619 0.00 0.00 0.00 3.91
1275 14524 2.361104 GGCGGCAAGATCACCCAA 60.361 61.111 3.07 0.00 0.00 4.12
1299 14548 1.580815 GCTCCTACTGATCAAGCTGC 58.419 55.000 8.74 0.00 0.00 5.25
1301 14550 1.406898 CTCCTACTGATCAAGCTGCGA 59.593 52.381 0.00 0.00 0.00 5.10
1345 14666 4.609691 TGTTTGTGTTTTCGGAGTTCTC 57.390 40.909 0.00 0.00 0.00 2.87
1350 14671 1.000506 TGTTTTCGGAGTTCTCGGGAG 59.999 52.381 7.36 0.00 0.00 4.30
1351 14672 1.000618 GTTTTCGGAGTTCTCGGGAGT 59.999 52.381 7.36 0.00 0.00 3.85
1352 14673 0.601558 TTTCGGAGTTCTCGGGAGTG 59.398 55.000 7.36 0.00 0.00 3.51
1353 14674 1.248785 TTCGGAGTTCTCGGGAGTGG 61.249 60.000 7.36 0.00 0.00 4.00
1354 14675 2.579738 GGAGTTCTCGGGAGTGGC 59.420 66.667 0.00 0.00 0.00 5.01
1355 14676 1.985116 GGAGTTCTCGGGAGTGGCT 60.985 63.158 0.00 0.00 0.00 4.75
1356 14677 1.216710 GAGTTCTCGGGAGTGGCTG 59.783 63.158 0.00 0.00 0.00 4.85
1357 14678 1.534235 AGTTCTCGGGAGTGGCTGT 60.534 57.895 0.00 0.00 0.00 4.40
1358 14679 0.251653 AGTTCTCGGGAGTGGCTGTA 60.252 55.000 0.00 0.00 0.00 2.74
1359 14680 0.606604 GTTCTCGGGAGTGGCTGTAA 59.393 55.000 0.00 0.00 0.00 2.41
1360 14681 0.606604 TTCTCGGGAGTGGCTGTAAC 59.393 55.000 0.00 0.00 0.00 2.50
1361 14682 0.251653 TCTCGGGAGTGGCTGTAACT 60.252 55.000 0.00 0.00 0.00 2.24
1362 14683 0.173708 CTCGGGAGTGGCTGTAACTC 59.826 60.000 4.02 4.02 42.79 3.01
1363 14684 0.251653 TCGGGAGTGGCTGTAACTCT 60.252 55.000 10.35 0.00 43.03 3.24
1364 14685 1.005097 TCGGGAGTGGCTGTAACTCTA 59.995 52.381 10.35 0.00 43.03 2.43
1365 14686 1.822990 CGGGAGTGGCTGTAACTCTAA 59.177 52.381 10.35 0.00 43.03 2.10
1366 14687 2.232941 CGGGAGTGGCTGTAACTCTAAA 59.767 50.000 10.35 0.00 43.03 1.85
1367 14688 3.676324 CGGGAGTGGCTGTAACTCTAAAG 60.676 52.174 10.35 0.00 43.03 1.85
1368 14689 3.261137 GGGAGTGGCTGTAACTCTAAAGT 59.739 47.826 10.35 0.00 43.03 2.66
1369 14690 4.465305 GGGAGTGGCTGTAACTCTAAAGTA 59.535 45.833 10.35 0.00 43.03 2.24
1370 14691 5.046807 GGGAGTGGCTGTAACTCTAAAGTAA 60.047 44.000 10.35 0.00 43.03 2.24
1371 14692 6.351966 GGGAGTGGCTGTAACTCTAAAGTAAT 60.352 42.308 10.35 0.00 43.03 1.89
1372 14693 6.535508 GGAGTGGCTGTAACTCTAAAGTAATG 59.464 42.308 10.35 0.00 43.03 1.90
1373 14694 7.241042 AGTGGCTGTAACTCTAAAGTAATGA 57.759 36.000 0.00 0.00 33.48 2.57
1374 14695 7.676947 AGTGGCTGTAACTCTAAAGTAATGAA 58.323 34.615 0.00 0.00 33.48 2.57
1375 14696 7.603024 AGTGGCTGTAACTCTAAAGTAATGAAC 59.397 37.037 0.00 0.00 33.48 3.18
1376 14697 7.603024 GTGGCTGTAACTCTAAAGTAATGAACT 59.397 37.037 0.00 0.00 41.49 3.01
1377 14698 7.602644 TGGCTGTAACTCTAAAGTAATGAACTG 59.397 37.037 0.00 0.00 38.88 3.16
1378 14699 7.064728 GGCTGTAACTCTAAAGTAATGAACTGG 59.935 40.741 0.00 0.00 38.88 4.00
1379 14700 7.603024 GCTGTAACTCTAAAGTAATGAACTGGT 59.397 37.037 0.00 0.00 38.88 4.00
1380 14701 8.827177 TGTAACTCTAAAGTAATGAACTGGTG 57.173 34.615 0.00 0.00 38.88 4.17
1381 14702 6.803154 AACTCTAAAGTAATGAACTGGTGC 57.197 37.500 0.00 0.00 38.88 5.01
1382 14703 5.246307 ACTCTAAAGTAATGAACTGGTGCC 58.754 41.667 0.00 0.00 38.88 5.01
1383 14704 5.013183 ACTCTAAAGTAATGAACTGGTGCCT 59.987 40.000 0.00 0.00 38.88 4.75
1384 14705 5.488341 TCTAAAGTAATGAACTGGTGCCTC 58.512 41.667 0.00 0.00 38.88 4.70
1385 14706 2.386661 AGTAATGAACTGGTGCCTCG 57.613 50.000 0.00 0.00 36.93 4.63
1386 14707 1.623811 AGTAATGAACTGGTGCCTCGT 59.376 47.619 0.00 0.00 36.93 4.18
1387 14708 1.732259 GTAATGAACTGGTGCCTCGTG 59.268 52.381 0.00 0.00 0.00 4.35
1388 14709 0.396435 AATGAACTGGTGCCTCGTGA 59.604 50.000 0.00 0.00 0.00 4.35
1389 14710 0.320771 ATGAACTGGTGCCTCGTGAC 60.321 55.000 0.00 0.00 0.00 3.67
1390 14711 1.367840 GAACTGGTGCCTCGTGACT 59.632 57.895 0.00 0.00 0.00 3.41
1391 14712 0.601558 GAACTGGTGCCTCGTGACTA 59.398 55.000 0.00 0.00 0.00 2.59
1392 14713 1.000506 GAACTGGTGCCTCGTGACTAA 59.999 52.381 0.00 0.00 0.00 2.24
1393 14714 0.603569 ACTGGTGCCTCGTGACTAAG 59.396 55.000 0.00 0.00 0.00 2.18
1394 14715 0.603569 CTGGTGCCTCGTGACTAAGT 59.396 55.000 0.00 0.00 0.00 2.24
1395 14716 0.317160 TGGTGCCTCGTGACTAAGTG 59.683 55.000 0.00 0.00 0.00 3.16
1396 14717 0.389948 GGTGCCTCGTGACTAAGTGG 60.390 60.000 0.00 0.00 0.00 4.00
1397 14718 0.389948 GTGCCTCGTGACTAAGTGGG 60.390 60.000 0.00 0.00 0.00 4.61
1398 14719 1.448013 GCCTCGTGACTAAGTGGGC 60.448 63.158 0.00 0.00 0.00 5.36
1399 14720 1.153823 CCTCGTGACTAAGTGGGCG 60.154 63.158 0.00 0.00 0.00 6.13
1400 14721 1.585006 CTCGTGACTAAGTGGGCGT 59.415 57.895 0.00 0.00 0.00 5.68
1401 14722 0.732880 CTCGTGACTAAGTGGGCGTG 60.733 60.000 0.00 0.00 0.00 5.34
1402 14723 1.174078 TCGTGACTAAGTGGGCGTGA 61.174 55.000 0.00 0.00 0.00 4.35
1403 14724 0.319211 CGTGACTAAGTGGGCGTGAA 60.319 55.000 0.00 0.00 0.00 3.18
1404 14725 1.870580 CGTGACTAAGTGGGCGTGAAA 60.871 52.381 0.00 0.00 0.00 2.69
1405 14726 2.215196 GTGACTAAGTGGGCGTGAAAA 58.785 47.619 0.00 0.00 0.00 2.29
1406 14727 2.614983 GTGACTAAGTGGGCGTGAAAAA 59.385 45.455 0.00 0.00 0.00 1.94
1407 14728 3.252458 GTGACTAAGTGGGCGTGAAAAAT 59.748 43.478 0.00 0.00 0.00 1.82
1408 14729 3.886505 TGACTAAGTGGGCGTGAAAAATT 59.113 39.130 0.00 0.00 0.00 1.82
1409 14730 4.023536 TGACTAAGTGGGCGTGAAAAATTC 60.024 41.667 0.00 0.00 0.00 2.17
1410 14731 4.142038 ACTAAGTGGGCGTGAAAAATTCT 58.858 39.130 0.00 0.00 0.00 2.40
1411 14732 5.310451 ACTAAGTGGGCGTGAAAAATTCTA 58.690 37.500 0.00 0.00 0.00 2.10
1412 14733 5.766174 ACTAAGTGGGCGTGAAAAATTCTAA 59.234 36.000 0.00 0.00 0.00 2.10
1413 14734 4.499037 AGTGGGCGTGAAAAATTCTAAC 57.501 40.909 0.00 0.00 0.00 2.34
1414 14735 3.254903 AGTGGGCGTGAAAAATTCTAACC 59.745 43.478 0.00 0.00 0.00 2.85
1415 14736 2.226912 TGGGCGTGAAAAATTCTAACCG 59.773 45.455 0.00 0.00 0.00 4.44
1416 14737 2.414957 GGGCGTGAAAAATTCTAACCGG 60.415 50.000 0.00 0.00 0.00 5.28
1417 14738 2.247637 GCGTGAAAAATTCTAACCGGC 58.752 47.619 0.00 0.00 0.00 6.13
1418 14739 2.858839 CGTGAAAAATTCTAACCGGCC 58.141 47.619 0.00 0.00 0.00 6.13
1419 14740 2.226912 CGTGAAAAATTCTAACCGGCCA 59.773 45.455 0.00 0.00 0.00 5.36
1420 14741 3.669557 CGTGAAAAATTCTAACCGGCCAG 60.670 47.826 0.00 0.00 0.00 4.85
1422 14743 1.847328 AAAATTCTAACCGGCCAGGG 58.153 50.000 16.44 6.84 46.96 4.45
1423 14744 0.702316 AAATTCTAACCGGCCAGGGT 59.298 50.000 16.44 13.02 46.96 4.34
1424 14745 0.034477 AATTCTAACCGGCCAGGGTG 60.034 55.000 13.61 5.00 42.40 4.61
1425 14746 1.921869 ATTCTAACCGGCCAGGGTGG 61.922 60.000 13.61 10.97 42.40 4.61
1434 14755 2.201210 CCAGGGTGGCCTTTGGTT 59.799 61.111 3.32 0.00 0.00 3.67
1435 14756 1.462928 CCAGGGTGGCCTTTGGTTA 59.537 57.895 3.32 0.00 0.00 2.85
1436 14757 0.611896 CCAGGGTGGCCTTTGGTTAG 60.612 60.000 3.32 0.00 0.00 2.34
1437 14758 0.404040 CAGGGTGGCCTTTGGTTAGA 59.596 55.000 3.32 0.00 0.00 2.10
1438 14759 1.005924 CAGGGTGGCCTTTGGTTAGAT 59.994 52.381 3.32 0.00 0.00 1.98
1439 14760 2.241176 CAGGGTGGCCTTTGGTTAGATA 59.759 50.000 3.32 0.00 0.00 1.98
1440 14761 3.117512 CAGGGTGGCCTTTGGTTAGATAT 60.118 47.826 3.32 0.00 0.00 1.63
1441 14762 4.104102 CAGGGTGGCCTTTGGTTAGATATA 59.896 45.833 3.32 0.00 0.00 0.86
1442 14763 4.920129 AGGGTGGCCTTTGGTTAGATATAT 59.080 41.667 3.32 0.00 0.00 0.86
1443 14764 5.375655 AGGGTGGCCTTTGGTTAGATATATT 59.624 40.000 3.32 0.00 0.00 1.28
1444 14765 5.710567 GGGTGGCCTTTGGTTAGATATATTC 59.289 44.000 3.32 0.00 0.00 1.75
1445 14766 6.303839 GGTGGCCTTTGGTTAGATATATTCA 58.696 40.000 3.32 0.00 0.00 2.57
1446 14767 6.431234 GGTGGCCTTTGGTTAGATATATTCAG 59.569 42.308 3.32 0.00 0.00 3.02
1447 14768 7.224297 GTGGCCTTTGGTTAGATATATTCAGA 58.776 38.462 3.32 0.00 0.00 3.27
1448 14769 7.173390 GTGGCCTTTGGTTAGATATATTCAGAC 59.827 40.741 3.32 0.00 0.00 3.51
1449 14770 7.147391 TGGCCTTTGGTTAGATATATTCAGACA 60.147 37.037 3.32 0.00 0.00 3.41
1450 14771 7.719633 GGCCTTTGGTTAGATATATTCAGACAA 59.280 37.037 0.00 0.00 0.00 3.18
1451 14772 9.120538 GCCTTTGGTTAGATATATTCAGACAAA 57.879 33.333 0.00 0.00 0.00 2.83
1465 14786 9.685276 ATATTCAGACAAAAGTACATGGATGAA 57.315 29.630 0.00 6.75 33.00 2.57
1466 14787 7.439157 TTCAGACAAAAGTACATGGATGAAG 57.561 36.000 0.00 0.00 0.00 3.02
1467 14788 6.768483 TCAGACAAAAGTACATGGATGAAGA 58.232 36.000 0.00 0.00 0.00 2.87
1468 14789 7.223584 TCAGACAAAAGTACATGGATGAAGAA 58.776 34.615 0.00 0.00 0.00 2.52
1469 14790 7.388776 TCAGACAAAAGTACATGGATGAAGAAG 59.611 37.037 0.00 0.00 0.00 2.85
1470 14791 6.656693 AGACAAAAGTACATGGATGAAGAAGG 59.343 38.462 0.00 0.00 0.00 3.46
1471 14792 5.711976 ACAAAAGTACATGGATGAAGAAGGG 59.288 40.000 0.00 0.00 0.00 3.95
1472 14793 4.510167 AAGTACATGGATGAAGAAGGGG 57.490 45.455 0.00 0.00 0.00 4.79
1473 14794 3.464828 AGTACATGGATGAAGAAGGGGT 58.535 45.455 0.00 0.00 0.00 4.95
1474 14795 2.814805 ACATGGATGAAGAAGGGGTG 57.185 50.000 0.00 0.00 0.00 4.61
1475 14796 1.285962 ACATGGATGAAGAAGGGGTGG 59.714 52.381 0.00 0.00 0.00 4.61
1476 14797 1.565759 CATGGATGAAGAAGGGGTGGA 59.434 52.381 0.00 0.00 0.00 4.02
1477 14798 1.753903 TGGATGAAGAAGGGGTGGAA 58.246 50.000 0.00 0.00 0.00 3.53
1478 14799 2.287584 TGGATGAAGAAGGGGTGGAAT 58.712 47.619 0.00 0.00 0.00 3.01
1479 14800 2.654385 TGGATGAAGAAGGGGTGGAATT 59.346 45.455 0.00 0.00 0.00 2.17
1480 14801 3.077391 TGGATGAAGAAGGGGTGGAATTT 59.923 43.478 0.00 0.00 0.00 1.82
1481 14802 4.293634 TGGATGAAGAAGGGGTGGAATTTA 59.706 41.667 0.00 0.00 0.00 1.40
1482 14803 4.889995 GGATGAAGAAGGGGTGGAATTTAG 59.110 45.833 0.00 0.00 0.00 1.85
1483 14804 4.316025 TGAAGAAGGGGTGGAATTTAGG 57.684 45.455 0.00 0.00 0.00 2.69
1484 14805 3.920197 TGAAGAAGGGGTGGAATTTAGGA 59.080 43.478 0.00 0.00 0.00 2.94
1485 14806 4.018415 TGAAGAAGGGGTGGAATTTAGGAG 60.018 45.833 0.00 0.00 0.00 3.69
1486 14807 2.853077 AGAAGGGGTGGAATTTAGGAGG 59.147 50.000 0.00 0.00 0.00 4.30
1487 14808 2.680439 AGGGGTGGAATTTAGGAGGA 57.320 50.000 0.00 0.00 0.00 3.71
1488 14809 2.942905 AGGGGTGGAATTTAGGAGGAA 58.057 47.619 0.00 0.00 0.00 3.36
1489 14810 2.581246 AGGGGTGGAATTTAGGAGGAAC 59.419 50.000 0.00 0.00 0.00 3.62
1490 14811 2.310647 GGGGTGGAATTTAGGAGGAACA 59.689 50.000 0.00 0.00 0.00 3.18
1491 14812 3.353557 GGGTGGAATTTAGGAGGAACAC 58.646 50.000 0.00 0.00 0.00 3.32
1492 14813 3.010250 GGGTGGAATTTAGGAGGAACACT 59.990 47.826 0.00 0.00 0.00 3.55
1493 14814 4.226620 GGGTGGAATTTAGGAGGAACACTA 59.773 45.833 0.00 0.00 0.00 2.74
1494 14815 5.280830 GGGTGGAATTTAGGAGGAACACTAA 60.281 44.000 0.00 0.00 0.00 2.24
1495 14816 6.243148 GGTGGAATTTAGGAGGAACACTAAA 58.757 40.000 0.00 0.00 41.58 1.85
1496 14817 6.150641 GGTGGAATTTAGGAGGAACACTAAAC 59.849 42.308 0.00 0.00 40.71 2.01
1497 14818 6.940867 GTGGAATTTAGGAGGAACACTAAACT 59.059 38.462 0.00 0.00 40.71 2.66
1498 14819 6.940298 TGGAATTTAGGAGGAACACTAAACTG 59.060 38.462 0.00 0.00 40.71 3.16
1499 14820 6.940867 GGAATTTAGGAGGAACACTAAACTGT 59.059 38.462 0.00 0.00 40.71 3.55
1500 14821 7.119407 GGAATTTAGGAGGAACACTAAACTGTC 59.881 40.741 0.00 0.00 40.71 3.51
1501 14822 6.488769 TTTAGGAGGAACACTAAACTGTCA 57.511 37.500 0.00 0.00 35.96 3.58
1502 14823 4.338379 AGGAGGAACACTAAACTGTCAC 57.662 45.455 0.00 0.00 0.00 3.67
1503 14824 3.709653 AGGAGGAACACTAAACTGTCACA 59.290 43.478 0.00 0.00 0.00 3.58
1504 14825 4.163458 AGGAGGAACACTAAACTGTCACAA 59.837 41.667 0.00 0.00 0.00 3.33
1505 14826 5.063880 GGAGGAACACTAAACTGTCACAAT 58.936 41.667 0.00 0.00 0.00 2.71
1506 14827 5.531287 GGAGGAACACTAAACTGTCACAATT 59.469 40.000 0.00 0.00 0.00 2.32
1507 14828 6.293462 GGAGGAACACTAAACTGTCACAATTC 60.293 42.308 0.00 0.00 0.00 2.17
1508 14829 5.236478 AGGAACACTAAACTGTCACAATTCG 59.764 40.000 0.00 0.00 0.00 3.34
1509 14830 5.007332 GGAACACTAAACTGTCACAATTCGT 59.993 40.000 0.00 0.00 0.00 3.85
1523 14844 5.160607 ACAATTCGTGAGGGATGTTAAGA 57.839 39.130 0.00 0.00 0.00 2.10
1524 14845 5.556915 ACAATTCGTGAGGGATGTTAAGAA 58.443 37.500 0.00 0.00 0.00 2.52
1525 14846 6.001460 ACAATTCGTGAGGGATGTTAAGAAA 58.999 36.000 0.00 0.00 0.00 2.52
1526 14847 6.149474 ACAATTCGTGAGGGATGTTAAGAAAG 59.851 38.462 0.00 0.00 0.00 2.62
1527 14848 4.884668 TCGTGAGGGATGTTAAGAAAGT 57.115 40.909 0.00 0.00 0.00 2.66
1528 14849 5.988310 TCGTGAGGGATGTTAAGAAAGTA 57.012 39.130 0.00 0.00 0.00 2.24
1529 14850 5.717119 TCGTGAGGGATGTTAAGAAAGTAC 58.283 41.667 0.00 0.00 0.00 2.73
1530 14851 5.244402 TCGTGAGGGATGTTAAGAAAGTACA 59.756 40.000 0.00 0.00 0.00 2.90
1531 14852 5.929992 CGTGAGGGATGTTAAGAAAGTACAA 59.070 40.000 0.00 0.00 0.00 2.41
1532 14853 6.128634 CGTGAGGGATGTTAAGAAAGTACAAC 60.129 42.308 0.00 0.00 0.00 3.32
1533 14854 6.148976 GTGAGGGATGTTAAGAAAGTACAACC 59.851 42.308 0.00 0.00 34.90 3.77
1534 14855 6.043938 TGAGGGATGTTAAGAAAGTACAACCT 59.956 38.462 0.00 0.00 35.68 3.50
1535 14856 6.473758 AGGGATGTTAAGAAAGTACAACCTC 58.526 40.000 0.00 0.00 35.68 3.85
1536 14857 6.272558 AGGGATGTTAAGAAAGTACAACCTCT 59.727 38.462 0.00 0.00 35.68 3.69
1537 14858 6.940867 GGGATGTTAAGAAAGTACAACCTCTT 59.059 38.462 0.00 0.16 35.68 2.85
1538 14859 7.447545 GGGATGTTAAGAAAGTACAACCTCTTT 59.552 37.037 0.00 0.00 35.68 2.52
1539 14860 8.847196 GGATGTTAAGAAAGTACAACCTCTTTT 58.153 33.333 0.00 0.00 34.60 2.27
1544 14865 6.879276 AGAAAGTACAACCTCTTTTTAGGC 57.121 37.500 0.00 0.00 40.62 3.93
1579 14900 1.427368 GGAGGAGATCTCTGGCCTCTA 59.573 57.143 21.81 0.00 44.91 2.43
1610 14931 4.211164 ACGATGCATACGGTCACATTTATG 59.789 41.667 18.34 0.00 34.93 1.90
1835 15160 4.335647 CACACGCTCCCTGGCCTT 62.336 66.667 3.32 0.00 0.00 4.35
1963 15288 5.826643 AGTTCCAGACTGCCCATAATAAAA 58.173 37.500 0.00 0.00 37.17 1.52
2020 15345 1.496060 ATCTATCCCGTCAAGCCACA 58.504 50.000 0.00 0.00 0.00 4.17
2119 15444 5.449725 GCTAATGGACAATCAAGAAAGAGGC 60.450 44.000 0.00 0.00 0.00 4.70
2123 15448 4.000988 GGACAATCAAGAAAGAGGCGTTA 58.999 43.478 0.00 0.00 0.00 3.18
2124 15449 4.093556 GGACAATCAAGAAAGAGGCGTTAG 59.906 45.833 0.00 0.00 0.00 2.34
2125 15450 3.437049 ACAATCAAGAAAGAGGCGTTAGC 59.563 43.478 0.00 0.00 44.18 3.09
2145 15470 3.322191 CCTCTTCTTAGGCTAGGGACT 57.678 52.381 3.62 0.00 46.37 3.85
2146 15471 4.456662 CCTCTTCTTAGGCTAGGGACTA 57.543 50.000 3.62 0.00 41.75 2.59
2147 15472 4.805744 CCTCTTCTTAGGCTAGGGACTAA 58.194 47.826 3.62 0.00 42.17 2.24
2148 15473 5.209659 CCTCTTCTTAGGCTAGGGACTAAA 58.790 45.833 3.62 0.00 41.92 1.85
2149 15474 5.841783 CCTCTTCTTAGGCTAGGGACTAAAT 59.158 44.000 3.62 0.00 41.92 1.40
2150 15475 6.327887 CCTCTTCTTAGGCTAGGGACTAAATT 59.672 42.308 3.62 0.00 41.92 1.82
2151 15476 7.147461 CCTCTTCTTAGGCTAGGGACTAAATTT 60.147 40.741 3.62 0.00 41.92 1.82
2152 15477 7.793036 TCTTCTTAGGCTAGGGACTAAATTTC 58.207 38.462 3.62 0.00 41.92 2.17
2153 15478 7.402071 TCTTCTTAGGCTAGGGACTAAATTTCA 59.598 37.037 3.62 0.00 41.92 2.69
2154 15479 7.691993 TCTTAGGCTAGGGACTAAATTTCAT 57.308 36.000 3.62 0.00 41.92 2.57
2155 15480 7.509546 TCTTAGGCTAGGGACTAAATTTCATG 58.490 38.462 3.62 0.00 41.92 3.07
2156 15481 5.717119 AGGCTAGGGACTAAATTTCATGT 57.283 39.130 0.00 0.00 42.17 3.21
2157 15482 5.440610 AGGCTAGGGACTAAATTTCATGTG 58.559 41.667 0.00 0.00 42.17 3.21
2158 15483 4.036852 GGCTAGGGACTAAATTTCATGTGC 59.963 45.833 0.00 0.00 42.17 4.57
2159 15484 4.640201 GCTAGGGACTAAATTTCATGTGCA 59.360 41.667 0.00 0.00 42.17 4.57
2160 15485 5.449177 GCTAGGGACTAAATTTCATGTGCAC 60.449 44.000 10.75 10.75 42.17 4.57
2161 15486 4.406456 AGGGACTAAATTTCATGTGCACA 58.594 39.130 24.08 24.08 36.02 4.57
2162 15487 4.832266 AGGGACTAAATTTCATGTGCACAA 59.168 37.500 25.72 7.65 36.02 3.33
2163 15488 5.481473 AGGGACTAAATTTCATGTGCACAAT 59.519 36.000 25.72 10.01 36.02 2.71
2164 15489 5.577945 GGGACTAAATTTCATGTGCACAATG 59.422 40.000 25.72 20.84 0.00 2.82
2165 15490 5.577945 GGACTAAATTTCATGTGCACAATGG 59.422 40.000 25.72 16.30 0.00 3.16
2166 15491 4.931002 ACTAAATTTCATGTGCACAATGGC 59.069 37.500 25.72 0.00 0.00 4.40
2167 15492 3.404224 AATTTCATGTGCACAATGGCA 57.596 38.095 25.72 12.27 42.53 4.92
2168 15493 2.904697 TTTCATGTGCACAATGGCAA 57.095 40.000 25.72 10.34 46.93 4.52
2169 15494 2.442212 TTCATGTGCACAATGGCAAG 57.558 45.000 25.72 7.99 46.93 4.01
2170 15495 0.604073 TCATGTGCACAATGGCAAGG 59.396 50.000 25.72 0.00 46.93 3.61
2171 15496 1.017177 CATGTGCACAATGGCAAGGC 61.017 55.000 25.72 0.00 46.93 4.35
2182 15507 3.443588 GCAAGGCCACGTCCTTTT 58.556 55.556 5.01 0.00 43.62 2.27
2183 15508 1.007387 GCAAGGCCACGTCCTTTTG 60.007 57.895 5.01 0.00 43.62 2.44
2184 15509 1.659794 CAAGGCCACGTCCTTTTGG 59.340 57.895 5.01 0.00 43.62 3.28
2185 15510 1.106944 CAAGGCCACGTCCTTTTGGT 61.107 55.000 5.01 0.00 43.62 3.67
2186 15511 0.396556 AAGGCCACGTCCTTTTGGTT 60.397 50.000 5.01 0.00 43.62 3.67
2187 15512 1.106944 AGGCCACGTCCTTTTGGTTG 61.107 55.000 5.01 0.00 41.38 3.77
2188 15513 1.362355 GCCACGTCCTTTTGGTTGG 59.638 57.895 0.00 0.00 41.38 3.77
2189 15514 1.104577 GCCACGTCCTTTTGGTTGGA 61.105 55.000 0.00 0.00 41.38 3.53
2190 15515 0.666374 CCACGTCCTTTTGGTTGGAC 59.334 55.000 0.00 0.00 46.69 4.02
2196 15521 2.875296 TCCTTTTGGTTGGACATCTGG 58.125 47.619 0.00 0.00 41.38 3.86
2197 15522 2.176798 TCCTTTTGGTTGGACATCTGGT 59.823 45.455 0.00 0.00 41.38 4.00
2198 15523 2.297033 CCTTTTGGTTGGACATCTGGTG 59.703 50.000 0.00 0.00 34.07 4.17
2199 15524 2.746279 TTTGGTTGGACATCTGGTGT 57.254 45.000 0.00 0.00 45.83 4.16
2200 15525 1.979855 TTGGTTGGACATCTGGTGTG 58.020 50.000 0.00 0.00 42.36 3.82
2201 15526 1.135960 TGGTTGGACATCTGGTGTGA 58.864 50.000 0.00 0.00 42.36 3.58
2202 15527 1.072173 TGGTTGGACATCTGGTGTGAG 59.928 52.381 0.00 0.00 42.36 3.51
2203 15528 1.611673 GGTTGGACATCTGGTGTGAGG 60.612 57.143 0.00 0.00 42.36 3.86
2204 15529 1.347707 GTTGGACATCTGGTGTGAGGA 59.652 52.381 0.00 0.00 42.36 3.71
2205 15530 1.956869 TGGACATCTGGTGTGAGGAT 58.043 50.000 0.00 0.00 42.36 3.24
2206 15531 3.114643 TGGACATCTGGTGTGAGGATA 57.885 47.619 0.00 0.00 42.36 2.59
2207 15532 3.033909 TGGACATCTGGTGTGAGGATAG 58.966 50.000 0.00 0.00 42.36 2.08
2208 15533 2.366916 GGACATCTGGTGTGAGGATAGG 59.633 54.545 0.00 0.00 42.36 2.57
2209 15534 1.765314 ACATCTGGTGTGAGGATAGGC 59.235 52.381 0.00 0.00 40.28 3.93
2210 15535 1.043816 ATCTGGTGTGAGGATAGGCG 58.956 55.000 0.00 0.00 0.00 5.52
2211 15536 0.324368 TCTGGTGTGAGGATAGGCGT 60.324 55.000 0.00 0.00 0.00 5.68
2212 15537 0.103208 CTGGTGTGAGGATAGGCGTC 59.897 60.000 0.00 0.00 0.00 5.19
2213 15538 0.324368 TGGTGTGAGGATAGGCGTCT 60.324 55.000 0.00 0.00 32.70 4.18
2214 15539 0.386113 GGTGTGAGGATAGGCGTCTC 59.614 60.000 0.00 0.00 32.70 3.36
2215 15540 0.386113 GTGTGAGGATAGGCGTCTCC 59.614 60.000 0.00 2.74 32.70 3.71
2216 15541 1.101635 TGTGAGGATAGGCGTCTCCG 61.102 60.000 0.00 0.00 40.77 4.63
2217 15542 1.528542 TGAGGATAGGCGTCTCCGG 60.529 63.158 0.00 0.00 40.77 5.14
2218 15543 2.203509 AGGATAGGCGTCTCCGGG 60.204 66.667 0.00 0.00 40.77 5.73
2219 15544 2.203451 GGATAGGCGTCTCCGGGA 60.203 66.667 0.00 0.00 40.77 5.14
2220 15545 1.606889 GGATAGGCGTCTCCGGGAT 60.607 63.158 0.00 0.00 40.77 3.85
2221 15546 1.587054 GATAGGCGTCTCCGGGATG 59.413 63.158 0.00 4.60 40.77 3.51
2222 15547 1.878656 GATAGGCGTCTCCGGGATGG 61.879 65.000 0.00 0.00 40.77 3.51
2225 15550 4.162690 GCGTCTCCGGGATGGCTT 62.163 66.667 0.00 0.00 37.80 4.35
2226 15551 2.584608 CGTCTCCGGGATGGCTTT 59.415 61.111 0.00 0.00 37.80 3.51
2227 15552 1.521681 CGTCTCCGGGATGGCTTTC 60.522 63.158 0.00 0.00 37.80 2.62
2228 15553 1.153147 GTCTCCGGGATGGCTTTCC 60.153 63.158 0.00 0.00 37.80 3.13
2229 15554 2.203070 CTCCGGGATGGCTTTCCG 60.203 66.667 12.97 12.97 43.05 4.30
2238 15563 3.662290 TGGCTTTCCGGCACTATTT 57.338 47.368 0.00 0.00 44.12 1.40
2239 15564 1.173043 TGGCTTTCCGGCACTATTTG 58.827 50.000 0.00 0.00 44.12 2.32
2249 15574 2.830772 GCACTATTTGCGATTGCTGA 57.169 45.000 6.47 0.00 42.79 4.26
2250 15575 3.135414 GCACTATTTGCGATTGCTGAA 57.865 42.857 6.47 1.70 42.79 3.02
2251 15576 3.500982 GCACTATTTGCGATTGCTGAAA 58.499 40.909 6.47 0.00 42.79 2.69
2252 15577 3.919804 GCACTATTTGCGATTGCTGAAAA 59.080 39.130 6.47 0.00 42.79 2.29
2253 15578 4.201523 GCACTATTTGCGATTGCTGAAAAC 60.202 41.667 6.47 0.00 42.79 2.43
2254 15579 4.324402 CACTATTTGCGATTGCTGAAAACC 59.676 41.667 6.47 0.00 43.34 3.27
2255 15580 2.879002 TTTGCGATTGCTGAAAACCA 57.121 40.000 6.47 0.00 43.34 3.67
2256 15581 2.420628 TTGCGATTGCTGAAAACCAG 57.579 45.000 6.47 0.00 45.67 4.00
2257 15582 1.603456 TGCGATTGCTGAAAACCAGA 58.397 45.000 6.47 0.00 45.78 3.86
2258 15583 1.952990 TGCGATTGCTGAAAACCAGAA 59.047 42.857 6.47 0.00 45.78 3.02
2259 15584 2.557924 TGCGATTGCTGAAAACCAGAAT 59.442 40.909 6.47 0.00 45.78 2.40
2260 15585 2.919229 GCGATTGCTGAAAACCAGAATG 59.081 45.455 0.00 0.00 45.78 2.67
2261 15586 2.919229 CGATTGCTGAAAACCAGAATGC 59.081 45.455 0.00 0.00 45.78 3.56
2262 15587 2.818130 TTGCTGAAAACCAGAATGCC 57.182 45.000 0.00 0.00 45.78 4.40
2263 15588 1.702182 TGCTGAAAACCAGAATGCCA 58.298 45.000 0.00 0.00 45.78 4.92
2264 15589 2.037901 TGCTGAAAACCAGAATGCCAA 58.962 42.857 0.00 0.00 45.78 4.52
2265 15590 2.433604 TGCTGAAAACCAGAATGCCAAA 59.566 40.909 0.00 0.00 45.78 3.28
2266 15591 3.062042 GCTGAAAACCAGAATGCCAAAG 58.938 45.455 0.00 0.00 45.78 2.77
2267 15592 3.493176 GCTGAAAACCAGAATGCCAAAGT 60.493 43.478 0.00 0.00 45.78 2.66
2268 15593 4.053295 CTGAAAACCAGAATGCCAAAGTG 58.947 43.478 0.00 0.00 45.78 3.16
2269 15594 3.181467 TGAAAACCAGAATGCCAAAGTGG 60.181 43.478 0.00 0.00 41.55 4.00
2280 15605 2.443887 CCAAAGTGGCAGAATGTTGG 57.556 50.000 0.00 0.00 39.31 3.77
2281 15606 1.606224 CCAAAGTGGCAGAATGTTGGC 60.606 52.381 0.00 0.00 43.38 4.52
2282 15607 0.314935 AAAGTGGCAGAATGTTGGCG 59.685 50.000 0.00 0.00 45.80 5.69
2283 15608 1.526575 AAGTGGCAGAATGTTGGCGG 61.527 55.000 0.00 0.00 45.80 6.13
2284 15609 3.372730 TGGCAGAATGTTGGCGGC 61.373 61.111 0.00 0.00 45.80 6.53
2285 15610 3.372730 GGCAGAATGTTGGCGGCA 61.373 61.111 7.97 7.97 39.31 5.69
2286 15611 2.180017 GCAGAATGTTGGCGGCAG 59.820 61.111 12.87 0.00 39.31 4.85
2287 15612 2.879907 CAGAATGTTGGCGGCAGG 59.120 61.111 12.87 0.00 0.00 4.85
2288 15613 2.361610 AGAATGTTGGCGGCAGGG 60.362 61.111 12.87 0.00 0.00 4.45
2289 15614 2.361104 GAATGTTGGCGGCAGGGA 60.361 61.111 12.87 0.00 0.00 4.20
2290 15615 2.676471 AATGTTGGCGGCAGGGAC 60.676 61.111 12.87 8.68 0.00 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 8.859090 CATAAGGCAGCTAAGATATAGATAGCT 58.141 37.037 9.48 9.48 44.01 3.32
4 5 8.855110 TCATAAGGCAGCTAAGATATAGATAGC 58.145 37.037 0.00 5.99 0.00 2.97
6 7 9.928618 AGTCATAAGGCAGCTAAGATATAGATA 57.071 33.333 0.00 0.00 0.00 1.98
7 8 8.837099 AGTCATAAGGCAGCTAAGATATAGAT 57.163 34.615 0.00 0.00 0.00 1.98
8 9 9.402320 CTAGTCATAAGGCAGCTAAGATATAGA 57.598 37.037 0.00 0.00 0.00 1.98
9 10 9.402320 TCTAGTCATAAGGCAGCTAAGATATAG 57.598 37.037 0.00 0.00 0.00 1.31
10 11 9.402320 CTCTAGTCATAAGGCAGCTAAGATATA 57.598 37.037 0.00 0.00 0.00 0.86
11 12 8.112822 TCTCTAGTCATAAGGCAGCTAAGATAT 58.887 37.037 0.00 0.00 0.00 1.63
12 13 7.462590 TCTCTAGTCATAAGGCAGCTAAGATA 58.537 38.462 0.00 0.00 0.00 1.98
13 14 6.310941 TCTCTAGTCATAAGGCAGCTAAGAT 58.689 40.000 0.00 0.00 0.00 2.40
15 16 6.588719 ATCTCTAGTCATAAGGCAGCTAAG 57.411 41.667 0.00 0.00 0.00 2.18
16 17 7.726291 ACTTATCTCTAGTCATAAGGCAGCTAA 59.274 37.037 19.20 0.00 37.04 3.09
30 31 7.676683 TTTAGGCAATCCACTTATCTCTAGT 57.323 36.000 0.00 0.00 33.74 2.57
90 91 0.698238 ATAGGTGGCAGCTGGAAACA 59.302 50.000 28.23 8.29 39.59 2.83
93 94 0.469917 GCTATAGGTGGCAGCTGGAA 59.530 55.000 28.23 9.86 32.46 3.53
117 122 5.232414 CCATAAAAGCTGAGTAGAAGCGTAC 59.768 44.000 0.00 0.00 45.59 3.67
127 132 3.091633 ACCATGCCATAAAAGCTGAGT 57.908 42.857 0.00 0.00 0.00 3.41
128 133 3.429822 CCAACCATGCCATAAAAGCTGAG 60.430 47.826 0.00 0.00 0.00 3.35
130 135 2.234414 ACCAACCATGCCATAAAAGCTG 59.766 45.455 0.00 0.00 0.00 4.24
214 251 4.219033 GTGACCGTTTGATTGATTGTCAC 58.781 43.478 0.00 0.00 42.69 3.67
221 258 2.920724 TCAGGTGACCGTTTGATTGA 57.079 45.000 0.00 0.00 0.00 2.57
232 269 1.243902 TGGGCGAAATTTCAGGTGAC 58.756 50.000 17.99 3.71 0.00 3.67
414 2783 5.750067 AGAACTTTTCGCGTTCAGTACTTAA 59.250 36.000 5.77 0.00 42.37 1.85
415 2784 5.284079 AGAACTTTTCGCGTTCAGTACTTA 58.716 37.500 5.77 0.00 42.37 2.24
437 3151 9.329913 CAAACTTCAATCGGTAATGTAAAAGAG 57.670 33.333 0.00 0.00 0.00 2.85
458 3172 4.442893 GCTTGGCTAAACCCTTTTCAAACT 60.443 41.667 0.00 0.00 37.83 2.66
460 3174 3.452627 TGCTTGGCTAAACCCTTTTCAAA 59.547 39.130 0.00 0.00 37.83 2.69
486 3203 9.173021 TCTGAAAAATAAGAGTTGAACACTTCA 57.827 29.630 11.17 2.46 35.01 3.02
500 4351 7.035612 GGGGCTACAAACATCTGAAAAATAAG 58.964 38.462 0.00 0.00 0.00 1.73
501 4352 6.495181 TGGGGCTACAAACATCTGAAAAATAA 59.505 34.615 0.00 0.00 0.00 1.40
544 5880 4.251268 ACTTGGACGTTGGCTATACTTTC 58.749 43.478 0.00 0.00 0.00 2.62
550 5886 2.170607 AGCATACTTGGACGTTGGCTAT 59.829 45.455 0.00 0.00 0.00 2.97
617 5963 1.065636 GTGGGAGCTAAGGGGTTGTAC 60.066 57.143 0.00 0.00 0.00 2.90
629 5979 1.366319 AATCTGGAACTGTGGGAGCT 58.634 50.000 0.00 0.00 0.00 4.09
686 6039 4.131596 TCAGCGGTGTAGCTTAAAAGTTT 58.868 39.130 15.22 0.00 46.80 2.66
731 8675 7.065923 GGGTTTAAGAAATGAGTGGATCAGTAC 59.934 40.741 0.00 0.00 42.53 2.73
775 8878 1.333791 GCCTTGTAGTTGTCGTTGTGC 60.334 52.381 0.00 0.00 0.00 4.57
885 9011 1.023513 GCTGTGAGCTGGGTGATGAC 61.024 60.000 0.00 0.00 38.45 3.06
886 9012 1.297689 GCTGTGAGCTGGGTGATGA 59.702 57.895 0.00 0.00 38.45 2.92
887 9013 1.748122 GGCTGTGAGCTGGGTGATG 60.748 63.158 0.00 0.00 41.99 3.07
888 9014 1.908340 GAGGCTGTGAGCTGGGTGAT 61.908 60.000 0.00 0.00 41.99 3.06
890 9016 2.046507 GAGGCTGTGAGCTGGGTG 60.047 66.667 0.00 0.00 41.99 4.61
891 9017 2.527624 TGAGGCTGTGAGCTGGGT 60.528 61.111 0.00 0.00 41.99 4.51
892 9018 2.046507 GTGAGGCTGTGAGCTGGG 60.047 66.667 0.00 0.00 41.99 4.45
893 9019 1.670406 GTGTGAGGCTGTGAGCTGG 60.670 63.158 0.00 0.00 41.99 4.85
894 9020 0.669932 GAGTGTGAGGCTGTGAGCTG 60.670 60.000 0.00 0.00 41.99 4.24
895 9021 1.670590 GAGTGTGAGGCTGTGAGCT 59.329 57.895 0.00 0.00 41.99 4.09
896 9022 1.735920 CGAGTGTGAGGCTGTGAGC 60.736 63.158 0.00 0.00 41.46 4.26
897 9023 1.735920 GCGAGTGTGAGGCTGTGAG 60.736 63.158 0.00 0.00 0.00 3.51
898 9024 2.340078 GCGAGTGTGAGGCTGTGA 59.660 61.111 0.00 0.00 0.00 3.58
899 9025 2.029518 TGCGAGTGTGAGGCTGTG 59.970 61.111 0.00 0.00 0.00 3.66
900 9026 2.029666 GTGCGAGTGTGAGGCTGT 59.970 61.111 0.00 0.00 0.00 4.40
901 9027 1.735920 GAGTGCGAGTGTGAGGCTG 60.736 63.158 0.00 0.00 0.00 4.85
902 9028 2.203082 TGAGTGCGAGTGTGAGGCT 61.203 57.895 0.00 0.00 0.00 4.58
903 9029 2.024319 GTGAGTGCGAGTGTGAGGC 61.024 63.158 0.00 0.00 0.00 4.70
904 9030 0.941463 GTGTGAGTGCGAGTGTGAGG 60.941 60.000 0.00 0.00 0.00 3.86
938 11118 1.522569 GTCGATTAGCTGCCCTGGT 59.477 57.895 0.00 0.00 0.00 4.00
1275 14524 2.028130 CTTGATCAGTAGGAGCCGAGT 58.972 52.381 0.00 0.00 0.00 4.18
1299 14548 4.928020 CCATCTCATACTCCACATCATTCG 59.072 45.833 0.00 0.00 0.00 3.34
1301 14550 6.044054 ACATCCATCTCATACTCCACATCATT 59.956 38.462 0.00 0.00 0.00 2.57
1345 14666 1.471119 TAGAGTTACAGCCACTCCCG 58.529 55.000 0.00 0.00 41.55 5.14
1350 14671 7.603024 AGTTCATTACTTTAGAGTTACAGCCAC 59.397 37.037 0.00 0.00 37.33 5.01
1351 14672 7.602644 CAGTTCATTACTTTAGAGTTACAGCCA 59.397 37.037 0.00 0.00 37.33 4.75
1352 14673 7.064728 CCAGTTCATTACTTTAGAGTTACAGCC 59.935 40.741 0.00 0.00 37.33 4.85
1353 14674 7.603024 ACCAGTTCATTACTTTAGAGTTACAGC 59.397 37.037 0.00 0.00 37.33 4.40
1354 14675 8.926710 CACCAGTTCATTACTTTAGAGTTACAG 58.073 37.037 0.00 0.00 37.33 2.74
1355 14676 7.386848 GCACCAGTTCATTACTTTAGAGTTACA 59.613 37.037 0.00 0.00 37.33 2.41
1356 14677 7.148457 GGCACCAGTTCATTACTTTAGAGTTAC 60.148 40.741 0.00 0.00 37.33 2.50
1357 14678 6.877322 GGCACCAGTTCATTACTTTAGAGTTA 59.123 38.462 0.00 0.00 37.33 2.24
1358 14679 5.705905 GGCACCAGTTCATTACTTTAGAGTT 59.294 40.000 0.00 0.00 37.33 3.01
1359 14680 5.013183 AGGCACCAGTTCATTACTTTAGAGT 59.987 40.000 0.00 0.00 39.97 3.24
1360 14681 5.491982 AGGCACCAGTTCATTACTTTAGAG 58.508 41.667 0.00 0.00 33.85 2.43
1361 14682 5.488341 GAGGCACCAGTTCATTACTTTAGA 58.512 41.667 0.00 0.00 33.85 2.10
1362 14683 4.330074 CGAGGCACCAGTTCATTACTTTAG 59.670 45.833 0.00 0.00 33.85 1.85
1363 14684 4.250464 CGAGGCACCAGTTCATTACTTTA 58.750 43.478 0.00 0.00 33.85 1.85
1364 14685 3.074412 CGAGGCACCAGTTCATTACTTT 58.926 45.455 0.00 0.00 33.85 2.66
1365 14686 2.038557 ACGAGGCACCAGTTCATTACTT 59.961 45.455 0.00 0.00 33.85 2.24
1366 14687 1.623811 ACGAGGCACCAGTTCATTACT 59.376 47.619 0.00 0.00 37.68 2.24
1367 14688 1.732259 CACGAGGCACCAGTTCATTAC 59.268 52.381 0.00 0.00 0.00 1.89
1368 14689 1.621317 TCACGAGGCACCAGTTCATTA 59.379 47.619 0.00 0.00 0.00 1.90
1369 14690 0.396435 TCACGAGGCACCAGTTCATT 59.604 50.000 0.00 0.00 0.00 2.57
1370 14691 0.320771 GTCACGAGGCACCAGTTCAT 60.321 55.000 0.00 0.00 0.00 2.57
1371 14692 1.069090 GTCACGAGGCACCAGTTCA 59.931 57.895 0.00 0.00 0.00 3.18
1372 14693 0.601558 TAGTCACGAGGCACCAGTTC 59.398 55.000 0.00 0.00 0.00 3.01
1373 14694 1.000955 CTTAGTCACGAGGCACCAGTT 59.999 52.381 0.00 0.00 0.00 3.16
1374 14695 0.603569 CTTAGTCACGAGGCACCAGT 59.396 55.000 0.00 0.00 0.00 4.00
1375 14696 0.603569 ACTTAGTCACGAGGCACCAG 59.396 55.000 0.00 0.00 0.00 4.00
1376 14697 0.317160 CACTTAGTCACGAGGCACCA 59.683 55.000 0.00 0.00 0.00 4.17
1377 14698 0.389948 CCACTTAGTCACGAGGCACC 60.390 60.000 0.00 0.00 0.00 5.01
1378 14699 0.389948 CCCACTTAGTCACGAGGCAC 60.390 60.000 0.00 0.00 0.00 5.01
1379 14700 1.972198 CCCACTTAGTCACGAGGCA 59.028 57.895 0.00 0.00 0.00 4.75
1380 14701 1.448013 GCCCACTTAGTCACGAGGC 60.448 63.158 0.00 0.00 0.00 4.70
1381 14702 1.153823 CGCCCACTTAGTCACGAGG 60.154 63.158 0.00 0.00 0.00 4.63
1382 14703 0.732880 CACGCCCACTTAGTCACGAG 60.733 60.000 5.42 0.00 0.00 4.18
1383 14704 1.174078 TCACGCCCACTTAGTCACGA 61.174 55.000 5.42 0.00 0.00 4.35
1384 14705 0.319211 TTCACGCCCACTTAGTCACG 60.319 55.000 0.00 0.00 0.00 4.35
1385 14706 1.873698 TTTCACGCCCACTTAGTCAC 58.126 50.000 0.00 0.00 0.00 3.67
1386 14707 2.623878 TTTTCACGCCCACTTAGTCA 57.376 45.000 0.00 0.00 0.00 3.41
1387 14708 4.215613 AGAATTTTTCACGCCCACTTAGTC 59.784 41.667 0.00 0.00 0.00 2.59
1388 14709 4.142038 AGAATTTTTCACGCCCACTTAGT 58.858 39.130 0.00 0.00 0.00 2.24
1389 14710 4.766404 AGAATTTTTCACGCCCACTTAG 57.234 40.909 0.00 0.00 0.00 2.18
1390 14711 5.048573 GGTTAGAATTTTTCACGCCCACTTA 60.049 40.000 0.00 0.00 0.00 2.24
1391 14712 4.261867 GGTTAGAATTTTTCACGCCCACTT 60.262 41.667 0.00 0.00 0.00 3.16
1392 14713 3.254903 GGTTAGAATTTTTCACGCCCACT 59.745 43.478 0.00 0.00 0.00 4.00
1393 14714 3.571571 GGTTAGAATTTTTCACGCCCAC 58.428 45.455 0.00 0.00 0.00 4.61
1394 14715 2.226912 CGGTTAGAATTTTTCACGCCCA 59.773 45.455 0.00 0.00 0.00 5.36
1395 14716 2.414957 CCGGTTAGAATTTTTCACGCCC 60.415 50.000 0.00 0.00 0.00 6.13
1396 14717 2.858839 CCGGTTAGAATTTTTCACGCC 58.141 47.619 0.00 0.00 0.00 5.68
1397 14718 2.247637 GCCGGTTAGAATTTTTCACGC 58.752 47.619 1.90 0.00 0.00 5.34
1398 14719 2.226912 TGGCCGGTTAGAATTTTTCACG 59.773 45.455 1.90 0.00 0.00 4.35
1399 14720 3.366985 CCTGGCCGGTTAGAATTTTTCAC 60.367 47.826 11.58 0.00 0.00 3.18
1400 14721 2.823154 CCTGGCCGGTTAGAATTTTTCA 59.177 45.455 11.58 0.00 0.00 2.69
1401 14722 2.165641 CCCTGGCCGGTTAGAATTTTTC 59.834 50.000 11.58 0.00 0.00 2.29
1402 14723 2.176045 CCCTGGCCGGTTAGAATTTTT 58.824 47.619 11.58 0.00 0.00 1.94
1403 14724 1.076513 ACCCTGGCCGGTTAGAATTTT 59.923 47.619 11.58 0.00 29.19 1.82
1404 14725 0.702316 ACCCTGGCCGGTTAGAATTT 59.298 50.000 11.58 0.00 29.19 1.82
1405 14726 0.034477 CACCCTGGCCGGTTAGAATT 60.034 55.000 11.58 0.00 32.17 2.17
1406 14727 1.607612 CACCCTGGCCGGTTAGAAT 59.392 57.895 11.58 0.00 32.17 2.40
1407 14728 2.598787 CCACCCTGGCCGGTTAGAA 61.599 63.158 11.58 0.00 32.17 2.10
1408 14729 3.006728 CCACCCTGGCCGGTTAGA 61.007 66.667 11.58 0.00 32.17 2.10
1417 14738 0.611896 CTAACCAAAGGCCACCCTGG 60.612 60.000 5.01 8.26 41.90 4.45
1418 14739 0.404040 TCTAACCAAAGGCCACCCTG 59.596 55.000 5.01 0.00 41.90 4.45
1419 14740 1.382914 ATCTAACCAAAGGCCACCCT 58.617 50.000 5.01 0.00 45.77 4.34
1420 14741 3.595190 ATATCTAACCAAAGGCCACCC 57.405 47.619 5.01 0.00 0.00 4.61
1421 14742 6.303839 TGAATATATCTAACCAAAGGCCACC 58.696 40.000 5.01 0.00 0.00 4.61
1422 14743 7.173390 GTCTGAATATATCTAACCAAAGGCCAC 59.827 40.741 5.01 0.00 0.00 5.01
1423 14744 7.147391 TGTCTGAATATATCTAACCAAAGGCCA 60.147 37.037 5.01 0.00 0.00 5.36
1424 14745 7.224297 TGTCTGAATATATCTAACCAAAGGCC 58.776 38.462 0.00 0.00 0.00 5.19
1425 14746 8.677148 TTGTCTGAATATATCTAACCAAAGGC 57.323 34.615 0.00 0.00 0.00 4.35
1439 14760 9.685276 TTCATCCATGTACTTTTGTCTGAATAT 57.315 29.630 0.00 0.00 0.00 1.28
1440 14761 9.166173 CTTCATCCATGTACTTTTGTCTGAATA 57.834 33.333 0.00 0.00 0.00 1.75
1441 14762 7.884877 TCTTCATCCATGTACTTTTGTCTGAAT 59.115 33.333 0.00 0.00 0.00 2.57
1442 14763 7.223584 TCTTCATCCATGTACTTTTGTCTGAA 58.776 34.615 0.00 1.34 0.00 3.02
1443 14764 6.768483 TCTTCATCCATGTACTTTTGTCTGA 58.232 36.000 0.00 0.00 0.00 3.27
1444 14765 7.361542 CCTTCTTCATCCATGTACTTTTGTCTG 60.362 40.741 0.00 0.00 0.00 3.51
1445 14766 6.656693 CCTTCTTCATCCATGTACTTTTGTCT 59.343 38.462 0.00 0.00 0.00 3.41
1446 14767 6.127897 CCCTTCTTCATCCATGTACTTTTGTC 60.128 42.308 0.00 0.00 0.00 3.18
1447 14768 5.711976 CCCTTCTTCATCCATGTACTTTTGT 59.288 40.000 0.00 0.00 0.00 2.83
1448 14769 5.126061 CCCCTTCTTCATCCATGTACTTTTG 59.874 44.000 0.00 0.00 0.00 2.44
1449 14770 5.222337 ACCCCTTCTTCATCCATGTACTTTT 60.222 40.000 0.00 0.00 0.00 2.27
1450 14771 4.292306 ACCCCTTCTTCATCCATGTACTTT 59.708 41.667 0.00 0.00 0.00 2.66
1451 14772 3.852578 ACCCCTTCTTCATCCATGTACTT 59.147 43.478 0.00 0.00 0.00 2.24
1452 14773 3.200825 CACCCCTTCTTCATCCATGTACT 59.799 47.826 0.00 0.00 0.00 2.73
1453 14774 3.545703 CACCCCTTCTTCATCCATGTAC 58.454 50.000 0.00 0.00 0.00 2.90
1454 14775 2.509548 CCACCCCTTCTTCATCCATGTA 59.490 50.000 0.00 0.00 0.00 2.29
1455 14776 1.285962 CCACCCCTTCTTCATCCATGT 59.714 52.381 0.00 0.00 0.00 3.21
1456 14777 1.565759 TCCACCCCTTCTTCATCCATG 59.434 52.381 0.00 0.00 0.00 3.66
1457 14778 1.985622 TCCACCCCTTCTTCATCCAT 58.014 50.000 0.00 0.00 0.00 3.41
1458 14779 1.753903 TTCCACCCCTTCTTCATCCA 58.246 50.000 0.00 0.00 0.00 3.41
1459 14780 3.388552 AATTCCACCCCTTCTTCATCC 57.611 47.619 0.00 0.00 0.00 3.51
1460 14781 4.889995 CCTAAATTCCACCCCTTCTTCATC 59.110 45.833 0.00 0.00 0.00 2.92
1461 14782 4.544152 TCCTAAATTCCACCCCTTCTTCAT 59.456 41.667 0.00 0.00 0.00 2.57
1462 14783 3.920197 TCCTAAATTCCACCCCTTCTTCA 59.080 43.478 0.00 0.00 0.00 3.02
1463 14784 4.527944 CTCCTAAATTCCACCCCTTCTTC 58.472 47.826 0.00 0.00 0.00 2.87
1464 14785 3.269643 CCTCCTAAATTCCACCCCTTCTT 59.730 47.826 0.00 0.00 0.00 2.52
1465 14786 2.853077 CCTCCTAAATTCCACCCCTTCT 59.147 50.000 0.00 0.00 0.00 2.85
1466 14787 2.850568 TCCTCCTAAATTCCACCCCTTC 59.149 50.000 0.00 0.00 0.00 3.46
1467 14788 2.942905 TCCTCCTAAATTCCACCCCTT 58.057 47.619 0.00 0.00 0.00 3.95
1468 14789 2.581246 GTTCCTCCTAAATTCCACCCCT 59.419 50.000 0.00 0.00 0.00 4.79
1469 14790 2.310647 TGTTCCTCCTAAATTCCACCCC 59.689 50.000 0.00 0.00 0.00 4.95
1470 14791 3.010250 AGTGTTCCTCCTAAATTCCACCC 59.990 47.826 0.00 0.00 0.00 4.61
1471 14792 4.302559 AGTGTTCCTCCTAAATTCCACC 57.697 45.455 0.00 0.00 0.00 4.61
1472 14793 6.940867 AGTTTAGTGTTCCTCCTAAATTCCAC 59.059 38.462 0.00 0.00 36.04 4.02
1473 14794 6.940298 CAGTTTAGTGTTCCTCCTAAATTCCA 59.060 38.462 0.00 0.00 36.04 3.53
1474 14795 6.940867 ACAGTTTAGTGTTCCTCCTAAATTCC 59.059 38.462 0.00 0.00 36.04 3.01
1475 14796 7.660208 TGACAGTTTAGTGTTCCTCCTAAATTC 59.340 37.037 0.00 0.00 36.04 2.17
1476 14797 7.444487 GTGACAGTTTAGTGTTCCTCCTAAATT 59.556 37.037 0.00 0.00 36.04 1.82
1477 14798 6.935208 GTGACAGTTTAGTGTTCCTCCTAAAT 59.065 38.462 0.00 0.00 36.04 1.40
1478 14799 6.126997 TGTGACAGTTTAGTGTTCCTCCTAAA 60.127 38.462 0.00 0.00 32.29 1.85
1479 14800 5.364446 TGTGACAGTTTAGTGTTCCTCCTAA 59.636 40.000 0.00 0.00 0.00 2.69
1480 14801 4.897076 TGTGACAGTTTAGTGTTCCTCCTA 59.103 41.667 0.00 0.00 0.00 2.94
1481 14802 3.709653 TGTGACAGTTTAGTGTTCCTCCT 59.290 43.478 0.00 0.00 0.00 3.69
1482 14803 4.067972 TGTGACAGTTTAGTGTTCCTCC 57.932 45.455 0.00 0.00 0.00 4.30
1483 14804 6.564125 CGAATTGTGACAGTTTAGTGTTCCTC 60.564 42.308 0.00 0.00 0.00 3.71
1484 14805 5.236478 CGAATTGTGACAGTTTAGTGTTCCT 59.764 40.000 0.00 0.00 0.00 3.36
1485 14806 5.007332 ACGAATTGTGACAGTTTAGTGTTCC 59.993 40.000 0.00 0.00 0.00 3.62
1486 14807 6.044512 ACGAATTGTGACAGTTTAGTGTTC 57.955 37.500 0.00 0.00 0.00 3.18
1501 14822 5.160607 TCTTAACATCCCTCACGAATTGT 57.839 39.130 0.00 0.00 0.00 2.71
1502 14823 6.149474 ACTTTCTTAACATCCCTCACGAATTG 59.851 38.462 0.00 0.00 0.00 2.32
1503 14824 6.238648 ACTTTCTTAACATCCCTCACGAATT 58.761 36.000 0.00 0.00 0.00 2.17
1504 14825 5.805728 ACTTTCTTAACATCCCTCACGAAT 58.194 37.500 0.00 0.00 0.00 3.34
1505 14826 5.223449 ACTTTCTTAACATCCCTCACGAA 57.777 39.130 0.00 0.00 0.00 3.85
1506 14827 4.884668 ACTTTCTTAACATCCCTCACGA 57.115 40.909 0.00 0.00 0.00 4.35
1507 14828 5.475719 TGTACTTTCTTAACATCCCTCACG 58.524 41.667 0.00 0.00 0.00 4.35
1508 14829 6.148976 GGTTGTACTTTCTTAACATCCCTCAC 59.851 42.308 0.00 0.00 30.16 3.51
1509 14830 6.043938 AGGTTGTACTTTCTTAACATCCCTCA 59.956 38.462 0.00 0.00 34.78 3.86
1510 14831 6.473758 AGGTTGTACTTTCTTAACATCCCTC 58.526 40.000 0.00 0.00 34.78 4.30
1511 14832 6.272558 AGAGGTTGTACTTTCTTAACATCCCT 59.727 38.462 0.00 0.00 35.22 4.20
1512 14833 6.473758 AGAGGTTGTACTTTCTTAACATCCC 58.526 40.000 0.00 0.00 35.22 3.85
1513 14834 7.981102 AAGAGGTTGTACTTTCTTAACATCC 57.019 36.000 0.00 0.00 35.22 3.51
1518 14839 8.843262 GCCTAAAAAGAGGTTGTACTTTCTTAA 58.157 33.333 0.00 0.00 39.02 1.85
1519 14840 8.215736 AGCCTAAAAAGAGGTTGTACTTTCTTA 58.784 33.333 0.00 0.00 39.02 2.10
1520 14841 7.061054 AGCCTAAAAAGAGGTTGTACTTTCTT 58.939 34.615 0.00 0.00 39.02 2.52
1521 14842 6.602278 AGCCTAAAAAGAGGTTGTACTTTCT 58.398 36.000 0.00 0.00 39.02 2.52
1522 14843 6.879276 AGCCTAAAAAGAGGTTGTACTTTC 57.121 37.500 0.00 0.00 39.02 2.62
1523 14844 7.655521 AAAGCCTAAAAAGAGGTTGTACTTT 57.344 32.000 0.00 0.00 39.02 2.66
1524 14845 7.655521 AAAAGCCTAAAAAGAGGTTGTACTT 57.344 32.000 0.00 0.00 39.02 2.24
1525 14846 7.655521 AAAAAGCCTAAAAAGAGGTTGTACT 57.344 32.000 0.00 0.00 39.02 2.73
1561 14882 1.856259 TGTAGAGGCCAGAGATCTCCT 59.144 52.381 19.30 9.79 0.00 3.69
1610 14931 6.961554 CCTGTGTCGAACTTATTTGCTTATTC 59.038 38.462 0.00 0.00 0.00 1.75
1835 15160 1.079612 TCGCTACTCACTCCGACGA 60.080 57.895 0.00 0.00 0.00 4.20
1963 15288 4.744570 CACATTCGTGTAGGAGTATGTGT 58.255 43.478 0.00 0.00 38.52 3.72
2020 15345 6.177610 ACACTATCAACACGTTATTTGGGAT 58.822 36.000 0.00 0.00 0.00 3.85
2091 15416 8.125978 TCTTTCTTGATTGTCCATTAGCAAAT 57.874 30.769 0.00 0.00 0.00 2.32
2097 15422 4.635765 CGCCTCTTTCTTGATTGTCCATTA 59.364 41.667 0.00 0.00 0.00 1.90
2125 15450 3.322191 AGTCCCTAGCCTAAGAAGAGG 57.678 52.381 0.00 0.00 39.88 3.69
2126 15451 6.987403 ATTTAGTCCCTAGCCTAAGAAGAG 57.013 41.667 0.00 0.00 0.00 2.85
2127 15452 7.402071 TGAAATTTAGTCCCTAGCCTAAGAAGA 59.598 37.037 0.00 0.00 0.00 2.87
2128 15453 7.565680 TGAAATTTAGTCCCTAGCCTAAGAAG 58.434 38.462 0.00 0.00 0.00 2.85
2129 15454 7.504926 TGAAATTTAGTCCCTAGCCTAAGAA 57.495 36.000 0.00 0.00 0.00 2.52
2130 15455 7.127339 ACATGAAATTTAGTCCCTAGCCTAAGA 59.873 37.037 0.00 0.00 0.00 2.10
2131 15456 7.227512 CACATGAAATTTAGTCCCTAGCCTAAG 59.772 40.741 0.00 0.00 0.00 2.18
2132 15457 7.054124 CACATGAAATTTAGTCCCTAGCCTAA 58.946 38.462 0.00 0.00 0.00 2.69
2133 15458 6.591935 CACATGAAATTTAGTCCCTAGCCTA 58.408 40.000 0.00 0.00 0.00 3.93
2134 15459 5.440610 CACATGAAATTTAGTCCCTAGCCT 58.559 41.667 0.00 0.00 0.00 4.58
2135 15460 4.036852 GCACATGAAATTTAGTCCCTAGCC 59.963 45.833 0.00 0.00 0.00 3.93
2136 15461 4.640201 TGCACATGAAATTTAGTCCCTAGC 59.360 41.667 0.00 0.00 0.00 3.42
2137 15462 5.647658 TGTGCACATGAAATTTAGTCCCTAG 59.352 40.000 17.42 0.00 0.00 3.02
2138 15463 5.565509 TGTGCACATGAAATTTAGTCCCTA 58.434 37.500 17.42 0.00 0.00 3.53
2139 15464 4.406456 TGTGCACATGAAATTTAGTCCCT 58.594 39.130 17.42 0.00 0.00 4.20
2140 15465 4.782019 TGTGCACATGAAATTTAGTCCC 57.218 40.909 17.42 0.00 0.00 4.46
2141 15466 5.577945 CCATTGTGCACATGAAATTTAGTCC 59.422 40.000 22.39 0.00 0.00 3.85
2142 15467 5.062558 GCCATTGTGCACATGAAATTTAGTC 59.937 40.000 22.39 0.00 0.00 2.59
2143 15468 4.931002 GCCATTGTGCACATGAAATTTAGT 59.069 37.500 22.39 0.00 0.00 2.24
2144 15469 4.930405 TGCCATTGTGCACATGAAATTTAG 59.070 37.500 22.39 7.51 36.04 1.85
2145 15470 4.891260 TGCCATTGTGCACATGAAATTTA 58.109 34.783 22.39 2.72 36.04 1.40
2146 15471 3.741249 TGCCATTGTGCACATGAAATTT 58.259 36.364 22.39 0.00 36.04 1.82
2147 15472 3.404224 TGCCATTGTGCACATGAAATT 57.596 38.095 22.39 0.00 36.04 1.82
2148 15473 3.331150 CTTGCCATTGTGCACATGAAAT 58.669 40.909 22.39 8.28 41.88 2.17
2149 15474 2.548280 CCTTGCCATTGTGCACATGAAA 60.548 45.455 22.39 12.06 41.88 2.69
2150 15475 1.001068 CCTTGCCATTGTGCACATGAA 59.999 47.619 22.39 6.21 41.88 2.57
2151 15476 0.604073 CCTTGCCATTGTGCACATGA 59.396 50.000 22.39 7.09 41.88 3.07
2152 15477 1.017177 GCCTTGCCATTGTGCACATG 61.017 55.000 22.39 19.20 41.88 3.21
2153 15478 1.294138 GCCTTGCCATTGTGCACAT 59.706 52.632 22.39 8.18 41.88 3.21
2154 15479 2.735883 GCCTTGCCATTGTGCACA 59.264 55.556 17.42 17.42 41.88 4.57
2168 15493 1.106944 CAACCAAAAGGACGTGGCCT 61.107 55.000 3.32 0.00 38.58 5.19
2169 15494 1.362355 CAACCAAAAGGACGTGGCC 59.638 57.895 0.00 0.00 38.58 5.36
2170 15495 1.104577 TCCAACCAAAAGGACGTGGC 61.105 55.000 0.00 0.00 38.58 5.01
2171 15496 0.666374 GTCCAACCAAAAGGACGTGG 59.334 55.000 0.00 0.00 44.23 4.94
2176 15501 2.176798 ACCAGATGTCCAACCAAAAGGA 59.823 45.455 0.00 0.00 0.00 3.36
2177 15502 2.297033 CACCAGATGTCCAACCAAAAGG 59.703 50.000 0.00 0.00 0.00 3.11
2178 15503 2.958355 ACACCAGATGTCCAACCAAAAG 59.042 45.455 0.00 0.00 36.54 2.27
2179 15504 2.692557 CACACCAGATGTCCAACCAAAA 59.307 45.455 0.00 0.00 40.64 2.44
2180 15505 2.092158 TCACACCAGATGTCCAACCAAA 60.092 45.455 0.00 0.00 40.64 3.28
2181 15506 1.492599 TCACACCAGATGTCCAACCAA 59.507 47.619 0.00 0.00 40.64 3.67
2182 15507 1.072173 CTCACACCAGATGTCCAACCA 59.928 52.381 0.00 0.00 40.64 3.67
2183 15508 1.611673 CCTCACACCAGATGTCCAACC 60.612 57.143 0.00 0.00 40.64 3.77
2184 15509 1.347707 TCCTCACACCAGATGTCCAAC 59.652 52.381 0.00 0.00 40.64 3.77
2185 15510 1.728323 TCCTCACACCAGATGTCCAA 58.272 50.000 0.00 0.00 40.64 3.53
2186 15511 1.956869 ATCCTCACACCAGATGTCCA 58.043 50.000 0.00 0.00 40.64 4.02
2187 15512 2.366916 CCTATCCTCACACCAGATGTCC 59.633 54.545 0.00 0.00 40.64 4.02
2188 15513 2.224161 GCCTATCCTCACACCAGATGTC 60.224 54.545 0.00 0.00 40.64 3.06
2189 15514 1.765314 GCCTATCCTCACACCAGATGT 59.235 52.381 0.00 0.00 44.81 3.06
2190 15515 1.269988 CGCCTATCCTCACACCAGATG 60.270 57.143 0.00 0.00 0.00 2.90
2191 15516 1.043816 CGCCTATCCTCACACCAGAT 58.956 55.000 0.00 0.00 0.00 2.90
2192 15517 0.324368 ACGCCTATCCTCACACCAGA 60.324 55.000 0.00 0.00 0.00 3.86
2193 15518 0.103208 GACGCCTATCCTCACACCAG 59.897 60.000 0.00 0.00 0.00 4.00
2194 15519 0.324368 AGACGCCTATCCTCACACCA 60.324 55.000 0.00 0.00 0.00 4.17
2195 15520 0.386113 GAGACGCCTATCCTCACACC 59.614 60.000 0.00 0.00 0.00 4.16
2196 15521 0.386113 GGAGACGCCTATCCTCACAC 59.614 60.000 0.00 0.00 32.51 3.82
2197 15522 2.808598 GGAGACGCCTATCCTCACA 58.191 57.895 0.00 0.00 32.51 3.58
2210 15535 1.153147 GGAAAGCCATCCCGGAGAC 60.153 63.158 0.73 0.00 36.56 3.36
2211 15536 2.731571 CGGAAAGCCATCCCGGAGA 61.732 63.158 0.73 0.00 39.59 3.71
2212 15537 2.203070 CGGAAAGCCATCCCGGAG 60.203 66.667 0.73 0.00 39.59 4.63
2215 15540 4.794648 TGCCGGAAAGCCATCCCG 62.795 66.667 5.05 0.00 42.64 5.14
2216 15541 2.265467 TAGTGCCGGAAAGCCATCCC 62.265 60.000 5.05 0.00 36.00 3.85
2217 15542 0.179018 ATAGTGCCGGAAAGCCATCC 60.179 55.000 5.05 0.00 36.05 3.51
2218 15543 1.680338 AATAGTGCCGGAAAGCCATC 58.320 50.000 5.05 0.00 0.00 3.51
2219 15544 1.750778 CAAATAGTGCCGGAAAGCCAT 59.249 47.619 5.05 0.00 0.00 4.40
2220 15545 1.173043 CAAATAGTGCCGGAAAGCCA 58.827 50.000 5.05 0.00 0.00 4.75
2231 15556 4.324402 GGTTTTCAGCAATCGCAAATAGTG 59.676 41.667 0.00 0.00 42.27 2.74
2232 15557 4.022416 TGGTTTTCAGCAATCGCAAATAGT 60.022 37.500 0.00 0.00 42.27 2.12
2233 15558 4.484236 TGGTTTTCAGCAATCGCAAATAG 58.516 39.130 0.00 0.00 42.27 1.73
2234 15559 4.217334 TCTGGTTTTCAGCAATCGCAAATA 59.783 37.500 0.00 0.00 43.06 1.40
2235 15560 3.005684 TCTGGTTTTCAGCAATCGCAAAT 59.994 39.130 0.00 0.00 43.06 2.32
2236 15561 2.360483 TCTGGTTTTCAGCAATCGCAAA 59.640 40.909 0.00 0.00 43.06 3.68
2237 15562 1.952990 TCTGGTTTTCAGCAATCGCAA 59.047 42.857 0.00 0.00 43.06 4.85
2238 15563 1.603456 TCTGGTTTTCAGCAATCGCA 58.397 45.000 0.00 0.00 43.06 5.10
2239 15564 2.704725 TTCTGGTTTTCAGCAATCGC 57.295 45.000 0.00 0.00 43.06 4.58
2240 15565 2.919229 GCATTCTGGTTTTCAGCAATCG 59.081 45.455 0.00 0.00 43.06 3.34
2241 15566 3.256558 GGCATTCTGGTTTTCAGCAATC 58.743 45.455 0.00 0.00 43.06 2.67
2242 15567 2.633967 TGGCATTCTGGTTTTCAGCAAT 59.366 40.909 0.00 0.00 43.06 3.56
2243 15568 2.037901 TGGCATTCTGGTTTTCAGCAA 58.962 42.857 0.00 0.00 43.06 3.91
2244 15569 1.702182 TGGCATTCTGGTTTTCAGCA 58.298 45.000 0.00 0.00 43.06 4.41
2245 15570 2.818130 TTGGCATTCTGGTTTTCAGC 57.182 45.000 0.00 0.00 43.06 4.26
2246 15571 4.053295 CACTTTGGCATTCTGGTTTTCAG 58.947 43.478 0.00 0.00 44.68 3.02
2247 15572 3.181467 CCACTTTGGCATTCTGGTTTTCA 60.181 43.478 0.00 0.00 0.00 2.69
2248 15573 3.392882 CCACTTTGGCATTCTGGTTTTC 58.607 45.455 0.00 0.00 0.00 2.29
2249 15574 3.473923 CCACTTTGGCATTCTGGTTTT 57.526 42.857 0.00 0.00 0.00 2.43
2261 15586 1.606224 GCCAACATTCTGCCACTTTGG 60.606 52.381 0.00 0.00 41.55 3.28
2262 15587 1.787012 GCCAACATTCTGCCACTTTG 58.213 50.000 0.00 0.00 0.00 2.77
2263 15588 0.314935 CGCCAACATTCTGCCACTTT 59.685 50.000 0.00 0.00 0.00 2.66
2264 15589 1.526575 CCGCCAACATTCTGCCACTT 61.527 55.000 0.00 0.00 0.00 3.16
2265 15590 1.973281 CCGCCAACATTCTGCCACT 60.973 57.895 0.00 0.00 0.00 4.00
2266 15591 2.568090 CCGCCAACATTCTGCCAC 59.432 61.111 0.00 0.00 0.00 5.01
2267 15592 3.372730 GCCGCCAACATTCTGCCA 61.373 61.111 0.00 0.00 0.00 4.92
2268 15593 3.346631 CTGCCGCCAACATTCTGCC 62.347 63.158 0.00 0.00 0.00 4.85
2269 15594 2.180017 CTGCCGCCAACATTCTGC 59.820 61.111 0.00 0.00 0.00 4.26
2270 15595 2.703798 CCCTGCCGCCAACATTCTG 61.704 63.158 0.00 0.00 0.00 3.02
2271 15596 2.361610 CCCTGCCGCCAACATTCT 60.362 61.111 0.00 0.00 0.00 2.40
2272 15597 2.361104 TCCCTGCCGCCAACATTC 60.361 61.111 0.00 0.00 0.00 2.67
2273 15598 2.676471 GTCCCTGCCGCCAACATT 60.676 61.111 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.