Multiple sequence alignment - TraesCS7D01G172400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G172400 chr7D 100.000 7460 0 0 1 7460 124530945 124523486 0.000000e+00 13777.0
1 TraesCS7D01G172400 chr7D 86.826 167 12 7 1635 1798 575593981 575594140 2.140000e-40 178.0
2 TraesCS7D01G172400 chr7D 95.238 84 4 0 6441 6524 124524466 124524383 4.700000e-27 134.0
3 TraesCS7D01G172400 chr7D 95.238 84 4 0 6480 6563 124524505 124524422 4.700000e-27 134.0
4 TraesCS7D01G172400 chr7D 84.536 97 13 2 7033 7127 454487004 454486908 2.220000e-15 95.3
5 TraesCS7D01G172400 chr7D 91.379 58 3 2 337 393 499960656 499960712 2.230000e-10 78.7
6 TraesCS7D01G172400 chr7D 95.000 40 1 1 3836 3874 234179279 234179240 2.250000e-05 62.1
7 TraesCS7D01G172400 chr7D 90.909 44 2 2 3831 3874 559273904 559273945 2.910000e-04 58.4
8 TraesCS7D01G172400 chr7A 96.158 3774 94 22 2294 6048 126955970 126952229 0.000000e+00 6119.0
9 TraesCS7D01G172400 chr7A 91.571 1661 77 30 633 2270 126957658 126956038 0.000000e+00 2233.0
10 TraesCS7D01G172400 chr7A 87.346 814 59 15 6179 6959 126951901 126951099 0.000000e+00 893.0
11 TraesCS7D01G172400 chr7A 85.801 331 25 10 7126 7442 126950996 126950674 1.550000e-86 331.0
12 TraesCS7D01G172400 chr7A 88.050 159 11 4 1639 1795 161689508 161689356 1.650000e-41 182.0
13 TraesCS7D01G172400 chr7A 91.667 108 7 2 6047 6152 126952068 126951961 1.680000e-31 148.0
14 TraesCS7D01G172400 chr7A 95.238 84 4 0 6480 6563 126951635 126951552 4.700000e-27 134.0
15 TraesCS7D01G172400 chr7A 92.188 64 3 2 1205 1268 48103152 48103091 1.030000e-13 89.8
16 TraesCS7D01G172400 chr7A 95.556 45 2 0 6519 6563 126951635 126951591 1.040000e-08 73.1
17 TraesCS7D01G172400 chr7A 97.297 37 0 1 3839 3874 464911313 464911349 2.250000e-05 62.1
18 TraesCS7D01G172400 chr7B 94.574 3889 131 38 2268 6113 86330991 86327140 0.000000e+00 5939.0
19 TraesCS7D01G172400 chr7B 92.072 1665 108 12 615 2270 86332687 86331038 0.000000e+00 2322.0
20 TraesCS7D01G172400 chr7B 93.528 309 19 1 6180 6487 86327003 86326695 6.820000e-125 459.0
21 TraesCS7D01G172400 chr7B 81.028 253 8 10 6519 6733 86326741 86326491 1.670000e-36 165.0
22 TraesCS7D01G172400 chr7B 90.566 106 6 3 177 279 141814558 141814454 3.630000e-28 137.0
23 TraesCS7D01G172400 chr7B 87.603 121 12 2 177 294 271298091 271297971 3.630000e-28 137.0
24 TraesCS7D01G172400 chr7B 90.000 90 6 2 6097 6183 86327128 86327039 6.120000e-21 113.0
25 TraesCS7D01G172400 chr7B 85.135 74 10 1 319 392 128766391 128766463 2.890000e-09 75.0
26 TraesCS7D01G172400 chr7B 93.617 47 3 0 6480 6526 86326741 86326695 3.730000e-08 71.3
27 TraesCS7D01G172400 chr7B 97.368 38 1 0 395 432 666580377 666580414 1.740000e-06 65.8
28 TraesCS7D01G172400 chr7B 87.755 49 5 1 3825 3873 21554684 21554731 1.000000e-03 56.5
29 TraesCS7D01G172400 chr6A 89.548 354 19 7 293 644 74429945 74429608 4.130000e-117 433.0
30 TraesCS7D01G172400 chr6A 92.574 202 14 1 3 204 74430141 74429941 9.470000e-74 289.0
31 TraesCS7D01G172400 chr6B 80.899 267 38 10 1375 1640 713712813 713713067 1.640000e-46 198.0
32 TraesCS7D01G172400 chr6B 87.629 97 9 3 7033 7127 354910781 354910686 7.910000e-20 110.0
33 TraesCS7D01G172400 chr6B 83.810 105 11 5 7028 7128 177769854 177769956 2.220000e-15 95.3
34 TraesCS7D01G172400 chr6B 83.673 98 12 4 7033 7127 576209767 576209863 1.030000e-13 89.8
35 TraesCS7D01G172400 chr6B 77.027 148 23 3 297 433 714127201 714127054 2.890000e-09 75.0
36 TraesCS7D01G172400 chr5D 80.899 267 38 5 1375 1640 344496505 344496759 1.640000e-46 198.0
37 TraesCS7D01G172400 chr5D 85.714 98 10 4 7033 7127 364679299 364679395 4.760000e-17 100.0
38 TraesCS7D01G172400 chr5D 84.000 100 9 6 7033 7128 50675212 50675116 1.030000e-13 89.8
39 TraesCS7D01G172400 chr5D 97.297 37 1 0 395 431 396691788 396691752 6.250000e-06 63.9
40 TraesCS7D01G172400 chr1A 88.889 162 10 7 1636 1795 395177604 395177449 7.640000e-45 193.0
41 TraesCS7D01G172400 chr1A 90.625 64 4 2 1205 1268 445261451 445261390 4.800000e-12 84.2
42 TraesCS7D01G172400 chr4D 88.415 164 10 4 1635 1795 74079347 74079504 9.880000e-44 189.0
43 TraesCS7D01G172400 chr1D 88.272 162 11 7 1636 1795 314705761 314705606 3.550000e-43 187.0
44 TraesCS7D01G172400 chr1D 84.946 93 12 2 302 392 58328113 58328205 7.970000e-15 93.5
45 TraesCS7D01G172400 chr1D 87.805 82 7 3 1205 1285 128529183 128529104 7.970000e-15 93.5
46 TraesCS7D01G172400 chr1D 97.436 39 1 0 394 432 41460433 41460471 4.830000e-07 67.6
47 TraesCS7D01G172400 chr2A 88.050 159 11 4 1639 1795 79316005 79316157 1.650000e-41 182.0
48 TraesCS7D01G172400 chr2A 91.262 103 4 5 181 279 75637126 75637227 1.310000e-27 135.0
49 TraesCS7D01G172400 chr2A 85.882 85 9 3 1205 1288 170470419 170470501 3.710000e-13 87.9
50 TraesCS7D01G172400 chr2A 88.333 60 6 1 476 534 144653702 144653761 3.730000e-08 71.3
51 TraesCS7D01G172400 chr2A 97.436 39 1 0 3836 3874 749565273 749565235 4.830000e-07 67.6
52 TraesCS7D01G172400 chr2A 97.297 37 1 0 395 431 696850843 696850879 6.250000e-06 63.9
53 TraesCS7D01G172400 chr4B 87.117 163 13 5 1638 1798 438375180 438375336 2.140000e-40 178.0
54 TraesCS7D01G172400 chr4B 88.034 117 11 2 181 294 494225684 494225568 1.310000e-27 135.0
55 TraesCS7D01G172400 chr1B 82.028 217 28 3 1425 1640 610151971 610151765 2.770000e-39 174.0
56 TraesCS7D01G172400 chr1B 87.179 117 12 2 181 294 423587967 423587851 6.070000e-26 130.0
57 TraesCS7D01G172400 chr1B 86.179 123 13 4 181 300 603215733 603215854 6.070000e-26 130.0
58 TraesCS7D01G172400 chr1B 81.250 160 22 4 177 333 558228144 558228298 1.020000e-23 122.0
59 TraesCS7D01G172400 chr1B 85.227 88 9 1 1794 1877 299465876 299465789 3.710000e-13 87.9
60 TraesCS7D01G172400 chr1B 90.625 64 4 2 1205 1268 160325246 160325307 4.800000e-12 84.2
61 TraesCS7D01G172400 chr1B 92.000 50 4 0 328 377 120393313 120393362 3.730000e-08 71.3
62 TraesCS7D01G172400 chr3B 90.000 120 7 4 181 296 734492292 734492174 4.660000e-32 150.0
63 TraesCS7D01G172400 chr3B 84.783 92 11 3 7038 7127 145469128 145469218 1.030000e-13 89.8
64 TraesCS7D01G172400 chr5B 87.603 121 12 3 181 298 522928965 522929085 3.630000e-28 137.0
65 TraesCS7D01G172400 chr5B 87.059 85 8 3 1205 1288 55370966 55371048 7.970000e-15 93.5
66 TraesCS7D01G172400 chr5B 88.235 51 6 0 339 389 187048696 187048746 2.250000e-05 62.1
67 TraesCS7D01G172400 chr2D 86.735 98 11 2 7033 7128 71262861 71262958 2.850000e-19 108.0
68 TraesCS7D01G172400 chr2D 79.167 144 15 11 297 429 492655225 492655364 1.330000e-12 86.1
69 TraesCS7D01G172400 chr2D 97.222 36 1 0 3840 3875 305841915 305841950 2.250000e-05 62.1
70 TraesCS7D01G172400 chr2B 85.849 106 10 5 7030 7132 651563098 651563201 2.850000e-19 108.0
71 TraesCS7D01G172400 chr2B 85.185 81 9 3 1205 1284 216462836 216462914 6.200000e-11 80.5
72 TraesCS7D01G172400 chr2B 80.851 94 18 0 298 391 721911168 721911261 2.890000e-09 75.0
73 TraesCS7D01G172400 chr2B 97.222 36 1 0 394 429 211011583 211011618 2.250000e-05 62.1
74 TraesCS7D01G172400 chr4A 85.542 83 8 1 1794 1872 216441929 216441847 4.800000e-12 84.2
75 TraesCS7D01G172400 chr5A 97.297 37 1 0 395 431 502299904 502299868 6.250000e-06 63.9
76 TraesCS7D01G172400 chr3D 89.362 47 3 2 3829 3874 124764688 124764733 2.910000e-04 58.4
77 TraesCS7D01G172400 chr3D 94.118 34 2 0 501 534 263354466 263354499 1.400000e-02 52.8
78 TraesCS7D01G172400 chr6D 86.792 53 3 4 378 429 470613434 470613385 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G172400 chr7D 124523486 124530945 7459 True 13777.000000 13777 100.000000 1 7460 1 chr7D.!!$R1 7459
1 TraesCS7D01G172400 chr7A 126950674 126957658 6984 True 1418.728571 6119 91.905286 633 7442 7 chr7A.!!$R3 6809
2 TraesCS7D01G172400 chr7B 86326491 86332687 6196 True 1511.550000 5939 90.803167 615 6733 6 chr7B.!!$R3 6118
3 TraesCS7D01G172400 chr6A 74429608 74430141 533 True 361.000000 433 91.061000 3 644 2 chr6A.!!$R1 641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
961 975 0.536006 GCCCTGCACTCAAACTCAGT 60.536 55.000 0.00 0.00 0.00 3.41 F
1331 1351 0.106708 ATTGATGGATGGACCCGACG 59.893 55.000 0.00 0.00 38.00 5.12 F
1335 1355 1.616865 GATGGATGGACCCGACGAATA 59.383 52.381 0.00 0.00 38.00 1.75 F
1473 1495 1.882912 TGTCACGATTGCTTTGCTCT 58.117 45.000 0.00 0.00 0.00 4.09 F
2270 2301 2.222007 TGCAATTGTGGCAGTTTGTC 57.778 45.000 7.40 0.00 36.11 3.18 F
2273 2353 2.746269 CAATTGTGGCAGTTTGTCCAG 58.254 47.619 0.00 0.00 32.15 3.86 F
2292 2372 3.616821 CCAGCATGCAAATTCACATCTTG 59.383 43.478 21.98 4.05 31.97 3.02 F
3343 3428 4.892934 ACTGGTTAAAAGCCATTCTTGACA 59.107 37.500 0.00 0.00 35.19 3.58 F
4455 4540 4.710324 TGTTCGTAAAAGTGGGACTGATT 58.290 39.130 0.00 0.00 0.00 2.57 F
5706 5797 0.108186 TGACTAATCACTGGCAGCCG 60.108 55.000 15.89 6.27 0.00 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2251 2282 1.202510 GGACAAACTGCCACAATTGCA 60.203 47.619 5.05 0.00 37.17 4.08 R
2270 2301 3.520290 AGATGTGAATTTGCATGCTGG 57.480 42.857 20.33 0.00 0.00 4.85 R
2402 2482 5.010933 TGAAAACAGGTAAACCACAGAACA 58.989 37.500 1.26 0.00 38.89 3.18 R
2834 2914 8.297426 CCATTTGATCATCAGAGTCAAATATGG 58.703 37.037 15.49 12.99 45.64 2.74 R
3765 3850 3.503363 TCTGTGGCAGCAACTAAATCAAG 59.497 43.478 0.43 0.00 0.00 3.02 R
4209 4294 4.439057 TCTGGTTTCCACGCTGTATATTC 58.561 43.478 0.00 0.00 0.00 1.75 R
4455 4540 8.386264 ACTGAGATTCAAAAAGATAGGAGGAAA 58.614 33.333 0.00 0.00 0.00 3.13 R
5167 5255 1.593196 TGCTCACCAACGAAAGAAGG 58.407 50.000 0.00 0.00 35.33 3.46 R
6016 6141 0.729116 ACATGCACTTGTATGCTCGC 59.271 50.000 7.17 0.00 46.28 5.03 R
7182 7656 0.178068 ACCCATACCGATGACACTGC 59.822 55.000 0.00 0.00 34.73 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 8.454106 AGCAAAGTGATATAAGCAACTGTTTAG 58.546 33.333 0.00 0.00 0.00 1.85
42 43 7.698130 GCAAAGTGATATAAGCAACTGTTTAGG 59.302 37.037 0.00 0.00 0.00 2.69
101 102 5.091552 TCCACTACCAAGGTGAGACTAAAT 58.908 41.667 1.07 0.00 36.89 1.40
129 130 4.080863 CACCTTCACCTCTAGCCTTACATT 60.081 45.833 0.00 0.00 0.00 2.71
166 167 9.696917 ATTTCTTGTCTTACATGGAAATTTGTC 57.303 29.630 0.00 0.00 37.48 3.18
192 193 8.989980 CATTTATTAGAAATTACTCCCTCCGTC 58.010 37.037 0.00 0.00 0.00 4.79
193 194 5.548181 ATTAGAAATTACTCCCTCCGTCC 57.452 43.478 0.00 0.00 0.00 4.79
194 195 1.755380 AGAAATTACTCCCTCCGTCCG 59.245 52.381 0.00 0.00 0.00 4.79
195 196 1.753073 GAAATTACTCCCTCCGTCCGA 59.247 52.381 0.00 0.00 0.00 4.55
204 205 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
205 206 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
206 207 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
207 208 2.597305 CTCCGTCCGAAAATACTTGTCG 59.403 50.000 0.00 0.00 34.58 4.35
208 209 2.228582 TCCGTCCGAAAATACTTGTCGA 59.771 45.455 1.13 0.00 36.92 4.20
209 210 2.988493 CCGTCCGAAAATACTTGTCGAA 59.012 45.455 1.13 0.00 36.92 3.71
210 211 3.429543 CCGTCCGAAAATACTTGTCGAAA 59.570 43.478 1.13 0.00 36.92 3.46
211 212 4.084433 CCGTCCGAAAATACTTGTCGAAAA 60.084 41.667 1.13 0.00 36.92 2.29
212 213 5.433855 CGTCCGAAAATACTTGTCGAAAAA 58.566 37.500 1.13 0.00 36.92 1.94
269 270 9.915629 ACATTTAGATACATCTATTTCTCCGAC 57.084 33.333 0.00 0.00 39.02 4.79
270 271 9.914131 CATTTAGATACATCTATTTCTCCGACA 57.086 33.333 0.00 0.00 39.02 4.35
272 273 9.967346 TTTAGATACATCTATTTCTCCGACAAG 57.033 33.333 0.00 0.00 39.02 3.16
273 274 7.589958 AGATACATCTATTTCTCCGACAAGT 57.410 36.000 0.00 0.00 34.85 3.16
274 275 8.693120 AGATACATCTATTTCTCCGACAAGTA 57.307 34.615 0.00 0.00 34.85 2.24
275 276 9.303116 AGATACATCTATTTCTCCGACAAGTAT 57.697 33.333 0.00 0.00 34.85 2.12
276 277 9.915629 GATACATCTATTTCTCCGACAAGTATT 57.084 33.333 0.00 0.00 0.00 1.89
278 279 8.649973 ACATCTATTTCTCCGACAAGTATTTC 57.350 34.615 0.00 0.00 0.00 2.17
279 280 8.478877 ACATCTATTTCTCCGACAAGTATTTCT 58.521 33.333 0.00 0.00 0.00 2.52
280 281 9.967346 CATCTATTTCTCCGACAAGTATTTCTA 57.033 33.333 0.00 0.00 0.00 2.10
288 289 9.595823 TCTCCGACAAGTATTTCTAAAATAAGG 57.404 33.333 0.00 0.00 0.00 2.69
289 290 8.726870 TCCGACAAGTATTTCTAAAATAAGGG 57.273 34.615 0.00 0.00 0.00 3.95
290 291 8.542080 TCCGACAAGTATTTCTAAAATAAGGGA 58.458 33.333 0.00 0.00 0.00 4.20
291 292 8.827677 CCGACAAGTATTTCTAAAATAAGGGAG 58.172 37.037 0.00 0.00 0.00 4.30
292 293 9.379791 CGACAAGTATTTCTAAAATAAGGGAGT 57.620 33.333 0.00 0.00 0.00 3.85
380 381 8.782533 AAAATGTAGATTCACTCGTTTTGTTC 57.217 30.769 0.00 0.00 31.06 3.18
382 383 8.827177 AATGTAGATTCACTCGTTTTGTTCTA 57.173 30.769 0.00 0.00 0.00 2.10
435 436 8.913487 TTTAGAAACGGAAGGAGTAGAAATTT 57.087 30.769 0.00 0.00 0.00 1.82
448 449 7.035612 GGAGTAGAAATTTGTAAATGGCCAAG 58.964 38.462 10.96 0.00 0.00 3.61
479 480 9.690913 AAACTCTTAACAATTACTATTACCCCC 57.309 33.333 0.00 0.00 0.00 5.40
480 481 7.503549 ACTCTTAACAATTACTATTACCCCCG 58.496 38.462 0.00 0.00 0.00 5.73
503 504 8.856103 CCCGTCCCAAATTAAATGTCTTATATT 58.144 33.333 0.00 0.00 0.00 1.28
539 542 6.916387 CGGATGTATCTAGACACGTTGTAATT 59.084 38.462 0.00 0.00 30.52 1.40
541 544 8.540492 GGATGTATCTAGACACGTTGTAATTTG 58.460 37.037 0.00 0.00 30.52 2.32
555 558 5.988310 TGTAATTTGAGACGGAAGGAGTA 57.012 39.130 0.00 0.00 0.00 2.59
600 603 8.450578 ACTGAGTATTCTCTCATCTCAAGTAG 57.549 38.462 0.77 0.00 42.47 2.57
601 604 7.502226 ACTGAGTATTCTCTCATCTCAAGTAGG 59.498 40.741 0.77 0.00 42.47 3.18
602 605 7.350382 TGAGTATTCTCTCATCTCAAGTAGGT 58.650 38.462 0.77 0.00 39.20 3.08
603 606 8.495260 TGAGTATTCTCTCATCTCAAGTAGGTA 58.505 37.037 0.77 0.00 39.20 3.08
604 607 9.515226 GAGTATTCTCTCATCTCAAGTAGGTAT 57.485 37.037 0.00 0.00 37.68 2.73
607 610 8.644374 ATTCTCTCATCTCAAGTAGGTATACC 57.356 38.462 14.54 14.54 31.78 2.73
608 611 6.544650 TCTCTCATCTCAAGTAGGTATACCC 58.455 44.000 18.65 4.13 36.42 3.69
755 763 4.886121 GAACCCGTCCCGATCCGC 62.886 72.222 0.00 0.00 0.00 5.54
853 863 4.443034 GGGAATCGGGGAGATATTAATCGG 60.443 50.000 0.00 0.00 38.98 4.18
961 975 0.536006 GCCCTGCACTCAAACTCAGT 60.536 55.000 0.00 0.00 0.00 3.41
962 976 1.517242 CCCTGCACTCAAACTCAGTC 58.483 55.000 0.00 0.00 0.00 3.51
963 977 1.071385 CCCTGCACTCAAACTCAGTCT 59.929 52.381 0.00 0.00 0.00 3.24
1151 1166 0.253488 TCCCCCTTCTCTTTACCCCC 60.253 60.000 0.00 0.00 0.00 5.40
1158 1173 0.991920 TCTCTTTACCCCCTTGCCTG 59.008 55.000 0.00 0.00 0.00 4.85
1199 1214 1.896660 TTTGACCAGCTGTTCGCCC 60.897 57.895 13.81 0.00 40.39 6.13
1247 1262 8.392372 AGACGTATTTCAGTGCTAGATACATA 57.608 34.615 0.00 0.00 0.00 2.29
1264 1279 1.393539 CATACGTTTGAGCCTCCAACG 59.606 52.381 24.37 24.37 0.00 4.10
1272 1288 0.744771 GAGCCTCCAACGAATCCCAC 60.745 60.000 0.00 0.00 0.00 4.61
1330 1350 2.289694 CCTATTGATGGATGGACCCGAC 60.290 54.545 0.00 0.00 38.00 4.79
1331 1351 0.106708 ATTGATGGATGGACCCGACG 59.893 55.000 0.00 0.00 38.00 5.12
1335 1355 1.616865 GATGGATGGACCCGACGAATA 59.383 52.381 0.00 0.00 38.00 1.75
1473 1495 1.882912 TGTCACGATTGCTTTGCTCT 58.117 45.000 0.00 0.00 0.00 4.09
1583 1606 4.096984 GGAGTAGAATGAACCTTTGGCATG 59.903 45.833 0.00 0.00 0.00 4.06
1607 1630 8.631480 TGTAGTAGGACATGTGGTGTATATAG 57.369 38.462 1.15 0.00 42.36 1.31
1647 1670 5.067544 GTCGTGCTTATAAACTACTCCCTCT 59.932 44.000 0.00 0.00 0.00 3.69
1692 1716 9.667107 TTCTAACTTTTTCTGAATCGGATGTAT 57.333 29.630 0.00 0.00 0.00 2.29
1732 1756 9.900264 GTTTTAGTGTGTTTGTTCATTCATTTC 57.100 29.630 0.00 0.00 0.00 2.17
1736 1760 7.995289 AGTGTGTTTGTTCATTCATTTCAGTA 58.005 30.769 0.00 0.00 0.00 2.74
1738 1762 7.700234 GTGTGTTTGTTCATTCATTTCAGTACA 59.300 33.333 0.00 0.00 0.00 2.90
1785 1815 6.259167 TCCGGAACATCTTATAATTTGGAACG 59.741 38.462 0.00 0.00 0.00 3.95
1788 1818 7.518370 CGGAACATCTTATAATTTGGAACGGAG 60.518 40.741 0.00 0.00 0.00 4.63
1790 1820 6.659824 ACATCTTATAATTTGGAACGGAGGT 58.340 36.000 0.00 0.00 0.00 3.85
1796 1826 9.420551 CTTATAATTTGGAACGGAGGTAGTATC 57.579 37.037 0.00 0.00 0.00 2.24
1800 1830 5.841957 TTGGAACGGAGGTAGTATCTAAC 57.158 43.478 0.00 0.00 0.00 2.34
1820 1850 4.833478 ACTTATGCTCTGTTGTCCATCT 57.167 40.909 0.00 0.00 0.00 2.90
1831 1861 7.128234 TCTGTTGTCCATCTATCATGATTGA 57.872 36.000 19.81 19.81 36.00 2.57
1885 1915 7.631717 AAATCATGACTAAGAAAAGCTACCC 57.368 36.000 0.00 0.00 0.00 3.69
1956 1986 6.312918 GCGTGAGTTCTCATATTTGGACTTAA 59.687 38.462 5.80 0.00 0.00 1.85
2025 2055 7.383300 CAGAAACGTATGCAGATCTCATAATCA 59.617 37.037 13.22 0.00 0.00 2.57
2027 2057 7.592439 AACGTATGCAGATCTCATAATCATG 57.408 36.000 13.22 0.00 0.00 3.07
2090 2120 4.141846 TGCCCTTTAGTTGTTGAAAATGCA 60.142 37.500 0.00 0.00 0.00 3.96
2191 2222 7.338196 TGTTTCAATTCTACTCAACCAGTCAAA 59.662 33.333 0.00 0.00 36.43 2.69
2198 2229 6.513180 TCTACTCAACCAGTCAAAGTACAAG 58.487 40.000 0.00 0.00 36.43 3.16
2251 2282 4.291249 TGCCTCACCCTAGATTTACCTTTT 59.709 41.667 0.00 0.00 0.00 2.27
2270 2301 2.222007 TGCAATTGTGGCAGTTTGTC 57.778 45.000 7.40 0.00 36.11 3.18
2273 2353 2.746269 CAATTGTGGCAGTTTGTCCAG 58.254 47.619 0.00 0.00 32.15 3.86
2292 2372 3.616821 CCAGCATGCAAATTCACATCTTG 59.383 43.478 21.98 4.05 31.97 3.02
2634 2714 9.077885 TGGGAATAATTTTAGGAGCAACATATC 57.922 33.333 0.00 0.00 0.00 1.63
3064 3144 8.251721 TCAAGGTAGCTGTACTAGAGATTTTTC 58.748 37.037 0.00 0.00 0.00 2.29
3065 3145 7.964666 AGGTAGCTGTACTAGAGATTTTTCT 57.035 36.000 0.00 0.00 0.00 2.52
3066 3146 8.368962 AGGTAGCTGTACTAGAGATTTTTCTT 57.631 34.615 0.00 0.00 0.00 2.52
3067 3147 8.817876 AGGTAGCTGTACTAGAGATTTTTCTTT 58.182 33.333 0.00 0.00 0.00 2.52
3068 3148 9.438228 GGTAGCTGTACTAGAGATTTTTCTTTT 57.562 33.333 0.00 0.00 0.00 2.27
3343 3428 4.892934 ACTGGTTAAAAGCCATTCTTGACA 59.107 37.500 0.00 0.00 35.19 3.58
3619 3704 6.577055 CCATGTCTTTTGTTATGTTGTACGTG 59.423 38.462 0.00 0.00 0.00 4.49
3765 3850 6.396829 AGATTTGCCACCTAATAATCTTGC 57.603 37.500 0.00 0.00 33.08 4.01
3774 3859 8.078596 GCCACCTAATAATCTTGCTTGATTTAG 58.921 37.037 9.35 6.90 37.73 1.85
3962 4047 7.231722 ACTCCACCTAGATAGCTACAATAACTG 59.768 40.741 0.00 0.00 0.00 3.16
4209 4294 9.840427 AACTTAATATCGAATGTTTGAACTTGG 57.160 29.630 0.00 0.00 0.00 3.61
4455 4540 4.710324 TGTTCGTAAAAGTGGGACTGATT 58.290 39.130 0.00 0.00 0.00 2.57
4532 4617 6.323996 TCAAGTACATCCCTCAGGTATTACTG 59.676 42.308 0.00 0.00 39.84 2.74
4575 4660 7.959175 AGTTACAGAGTACAACCAAATGACTA 58.041 34.615 0.00 0.00 0.00 2.59
4740 4825 6.514012 AATATGAACACCCCAGATATGTCA 57.486 37.500 0.00 0.00 0.00 3.58
5167 5255 4.894784 TCTATGGAAATATCGGCAAGACC 58.105 43.478 0.00 0.00 0.00 3.85
5228 5317 6.015180 ACAGACTATACGTTTTTGGTCACCTA 60.015 38.462 0.00 0.00 0.00 3.08
5242 5331 4.113354 GGTCACCTATTAGCTTTCTGACG 58.887 47.826 0.00 0.00 0.00 4.35
5262 5351 7.328493 TCTGACGTGTTCTCACAGTATAAAATG 59.672 37.037 0.00 0.00 44.02 2.32
5440 5529 6.155475 AGCCTGAAGAAGATAGTGTATGAC 57.845 41.667 0.00 0.00 0.00 3.06
5484 5573 7.880195 AGTGCTGTCTCAATTACTATCTGTTTT 59.120 33.333 0.00 0.00 0.00 2.43
5485 5574 9.151471 GTGCTGTCTCAATTACTATCTGTTTTA 57.849 33.333 0.00 0.00 0.00 1.52
5698 5789 5.385198 TCCTTTTGCCTTTGACTAATCACT 58.615 37.500 0.00 0.00 33.38 3.41
5700 5791 5.452078 TTTTGCCTTTGACTAATCACTGG 57.548 39.130 0.00 0.00 33.38 4.00
5701 5792 2.436417 TGCCTTTGACTAATCACTGGC 58.564 47.619 9.02 9.02 46.18 4.85
5702 5793 2.436417 GCCTTTGACTAATCACTGGCA 58.564 47.619 10.58 0.00 45.69 4.92
5703 5794 2.421424 GCCTTTGACTAATCACTGGCAG 59.579 50.000 14.16 14.16 45.69 4.85
5704 5795 2.421424 CCTTTGACTAATCACTGGCAGC 59.579 50.000 15.89 0.00 33.38 5.25
5705 5796 2.113860 TTGACTAATCACTGGCAGCC 57.886 50.000 15.89 3.66 33.38 4.85
5706 5797 0.108186 TGACTAATCACTGGCAGCCG 60.108 55.000 15.89 6.27 0.00 5.52
5745 5836 3.579586 ACCAATGGCATGTTTCAGACAAT 59.420 39.130 0.00 0.00 42.62 2.71
5749 5840 6.477688 CCAATGGCATGTTTCAGACAATAATC 59.522 38.462 0.00 0.00 42.62 1.75
5777 5868 2.588877 GTGACAGCCACGTGTGCT 60.589 61.111 21.19 21.19 40.41 4.40
5804 5906 8.188531 ACTTCAATTTATTTTTCATGGCATCG 57.811 30.769 0.00 0.00 0.00 3.84
5818 5920 2.145053 GCATCGTTGCTAAACTGTCG 57.855 50.000 11.21 0.00 45.77 4.35
5907 6032 2.102578 AGTGGAGCTTTGCTTGTTTGT 58.897 42.857 0.00 0.00 39.88 2.83
5908 6033 2.099756 AGTGGAGCTTTGCTTGTTTGTC 59.900 45.455 0.00 0.00 39.88 3.18
5962 6087 9.793245 GTTTCATCAAATAGAATAATACGTCGG 57.207 33.333 0.00 0.00 0.00 4.79
5969 6094 2.861935 AGAATAATACGTCGGCAAACGG 59.138 45.455 13.65 0.00 46.72 4.44
6000 6125 7.427989 AAAGATTGGGTGCTCATTAAATGAT 57.572 32.000 0.00 0.00 38.85 2.45
6006 6131 5.046448 TGGGTGCTCATTAAATGATTTGCTT 60.046 36.000 0.00 0.00 38.85 3.91
6016 6141 9.438291 CATTAAATGATTTGCTTAAGGAGTACG 57.562 33.333 4.29 0.00 0.00 3.67
6053 6340 8.023128 AGTGCATGTTTGTATCATTTAGTTGAC 58.977 33.333 0.00 0.00 0.00 3.18
6172 6491 3.120234 TGCTCGTGCATTTGTTACTCATG 60.120 43.478 8.30 0.00 45.31 3.07
6196 6558 1.967319 AAGCGGAAGTTCTTTGAGCA 58.033 45.000 2.25 0.00 0.00 4.26
6207 6569 1.988107 TCTTTGAGCATCTCCAACCCT 59.012 47.619 0.00 0.00 34.92 4.34
6218 6580 3.709587 TCTCCAACCCTAACCTAGTCAG 58.290 50.000 0.00 0.00 0.00 3.51
6227 6589 9.193806 CAACCCTAACCTAGTCAGTAAAGTATA 57.806 37.037 0.00 0.00 0.00 1.47
6229 6591 9.364653 ACCCTAACCTAGTCAGTAAAGTATATG 57.635 37.037 0.00 0.00 0.00 1.78
6230 6592 9.364653 CCCTAACCTAGTCAGTAAAGTATATGT 57.635 37.037 0.00 0.00 0.00 2.29
6277 6642 0.921347 CGCAAAACGGAGGATCTACG 59.079 55.000 0.00 0.00 44.37 3.51
6381 6746 7.906611 TGTTTGAATTTTGTATGTCTGTTCG 57.093 32.000 0.00 0.00 0.00 3.95
6473 6839 3.998341 GCCGTGTAAACTTGTAGGATTGA 59.002 43.478 0.00 0.00 0.00 2.57
6526 6931 3.673343 AGGATTGGAGATGAAGATGGGA 58.327 45.455 0.00 0.00 0.00 4.37
6527 6932 3.393941 AGGATTGGAGATGAAGATGGGAC 59.606 47.826 0.00 0.00 0.00 4.46
6528 6933 2.988010 TTGGAGATGAAGATGGGACG 57.012 50.000 0.00 0.00 0.00 4.79
6529 6934 1.123077 TGGAGATGAAGATGGGACGG 58.877 55.000 0.00 0.00 0.00 4.79
6530 6935 0.250081 GGAGATGAAGATGGGACGGC 60.250 60.000 0.00 0.00 0.00 5.68
6531 6936 0.755686 GAGATGAAGATGGGACGGCT 59.244 55.000 0.00 0.00 0.00 5.52
6532 6937 0.467384 AGATGAAGATGGGACGGCTG 59.533 55.000 0.00 0.00 0.00 4.85
6533 6938 0.179000 GATGAAGATGGGACGGCTGT 59.821 55.000 0.00 0.00 0.00 4.40
6534 6939 0.107508 ATGAAGATGGGACGGCTGTG 60.108 55.000 0.80 0.00 0.00 3.66
6535 6940 1.296715 GAAGATGGGACGGCTGTGT 59.703 57.895 0.80 0.00 0.00 3.72
6536 6941 0.535335 GAAGATGGGACGGCTGTGTA 59.465 55.000 0.80 0.00 0.00 2.90
6537 6942 0.981183 AAGATGGGACGGCTGTGTAA 59.019 50.000 0.80 0.00 0.00 2.41
6538 6943 0.981183 AGATGGGACGGCTGTGTAAA 59.019 50.000 0.80 0.00 0.00 2.01
6539 6944 1.084289 GATGGGACGGCTGTGTAAAC 58.916 55.000 0.80 0.00 0.00 2.01
6540 6945 0.690762 ATGGGACGGCTGTGTAAACT 59.309 50.000 0.80 0.00 0.00 2.66
6541 6946 0.470766 TGGGACGGCTGTGTAAACTT 59.529 50.000 0.80 0.00 0.00 2.66
6542 6947 0.872388 GGGACGGCTGTGTAAACTTG 59.128 55.000 0.80 0.00 0.00 3.16
6543 6948 1.589803 GGACGGCTGTGTAAACTTGT 58.410 50.000 0.80 0.00 0.00 3.16
6544 6949 2.548493 GGGACGGCTGTGTAAACTTGTA 60.548 50.000 0.80 0.00 0.00 2.41
6545 6950 2.735134 GGACGGCTGTGTAAACTTGTAG 59.265 50.000 0.80 0.00 0.00 2.74
6546 6951 2.735134 GACGGCTGTGTAAACTTGTAGG 59.265 50.000 0.80 0.00 0.00 3.18
6547 6952 2.366266 ACGGCTGTGTAAACTTGTAGGA 59.634 45.455 0.00 0.00 0.00 2.94
6548 6953 3.007614 ACGGCTGTGTAAACTTGTAGGAT 59.992 43.478 0.00 0.00 0.00 3.24
6549 6954 4.000988 CGGCTGTGTAAACTTGTAGGATT 58.999 43.478 0.00 0.00 0.00 3.01
6550 6955 4.142902 CGGCTGTGTAAACTTGTAGGATTG 60.143 45.833 0.00 0.00 0.00 2.67
6551 6956 4.156008 GGCTGTGTAAACTTGTAGGATTGG 59.844 45.833 0.00 0.00 0.00 3.16
6552 6957 5.001232 GCTGTGTAAACTTGTAGGATTGGA 58.999 41.667 0.00 0.00 0.00 3.53
6553 6958 5.122396 GCTGTGTAAACTTGTAGGATTGGAG 59.878 44.000 0.00 0.00 0.00 3.86
6554 6959 6.428083 TGTGTAAACTTGTAGGATTGGAGA 57.572 37.500 0.00 0.00 0.00 3.71
6555 6960 7.016153 TGTGTAAACTTGTAGGATTGGAGAT 57.984 36.000 0.00 0.00 0.00 2.75
6556 6961 6.878923 TGTGTAAACTTGTAGGATTGGAGATG 59.121 38.462 0.00 0.00 0.00 2.90
6557 6962 7.103641 GTGTAAACTTGTAGGATTGGAGATGA 58.896 38.462 0.00 0.00 0.00 2.92
6558 6963 7.606456 GTGTAAACTTGTAGGATTGGAGATGAA 59.394 37.037 0.00 0.00 0.00 2.57
6559 6964 7.824289 TGTAAACTTGTAGGATTGGAGATGAAG 59.176 37.037 0.00 0.00 0.00 3.02
6560 6965 6.627087 AACTTGTAGGATTGGAGATGAAGA 57.373 37.500 0.00 0.00 0.00 2.87
6561 6966 6.821616 ACTTGTAGGATTGGAGATGAAGAT 57.178 37.500 0.00 0.00 0.00 2.40
6562 6967 6.590068 ACTTGTAGGATTGGAGATGAAGATG 58.410 40.000 0.00 0.00 0.00 2.90
6563 6968 6.385176 ACTTGTAGGATTGGAGATGAAGATGA 59.615 38.462 0.00 0.00 0.00 2.92
6564 6969 6.416631 TGTAGGATTGGAGATGAAGATGAG 57.583 41.667 0.00 0.00 0.00 2.90
6605 7010 2.623418 TGAGGGAGGCTCTCAAGTAA 57.377 50.000 18.31 0.00 38.20 2.24
6607 7012 3.454858 TGAGGGAGGCTCTCAAGTAATT 58.545 45.455 18.31 0.00 38.20 1.40
6608 7013 4.620723 TGAGGGAGGCTCTCAAGTAATTA 58.379 43.478 18.31 0.00 38.20 1.40
6609 7014 5.030147 TGAGGGAGGCTCTCAAGTAATTAA 58.970 41.667 18.31 0.00 38.20 1.40
6650 7067 1.961793 GGACCAAAAACAAAAGGGCC 58.038 50.000 0.00 0.00 43.32 5.80
6654 7071 2.041755 ACCAAAAACAAAAGGGCCCAAA 59.958 40.909 27.56 0.00 0.00 3.28
6655 7072 2.425312 CCAAAAACAAAAGGGCCCAAAC 59.575 45.455 27.56 0.00 0.00 2.93
6656 7073 2.031258 AAAACAAAAGGGCCCAAACG 57.969 45.000 27.56 12.40 0.00 3.60
6657 7074 1.196012 AAACAAAAGGGCCCAAACGA 58.804 45.000 27.56 0.00 0.00 3.85
6658 7075 1.419381 AACAAAAGGGCCCAAACGAT 58.581 45.000 27.56 2.35 0.00 3.73
6739 7181 8.908786 AGAAGAAGCATCGGAAATCAAATATA 57.091 30.769 0.00 0.00 0.00 0.86
6744 7189 7.582435 AGCATCGGAAATCAAATATACTACG 57.418 36.000 0.00 0.00 0.00 3.51
6748 7193 6.274579 TCGGAAATCAAATATACTACGTGCA 58.725 36.000 0.00 0.00 0.00 4.57
6766 7211 5.932303 ACGTGCAAATTCTACTCATGTAGTT 59.068 36.000 0.00 0.00 44.74 2.24
6789 7234 5.388408 TTTACCACAAGAAAACAAACCGT 57.612 34.783 0.00 0.00 0.00 4.83
6807 7252 3.254166 ACCGTACACAATTCTACTCGTGT 59.746 43.478 0.00 0.00 44.40 4.49
6808 7253 3.606777 CCGTACACAATTCTACTCGTGTG 59.393 47.826 7.12 1.28 45.45 3.82
6809 7254 4.469552 CGTACACAATTCTACTCGTGTGA 58.530 43.478 9.46 0.00 43.23 3.58
6810 7255 5.093457 CGTACACAATTCTACTCGTGTGAT 58.907 41.667 9.46 0.00 43.23 3.06
6812 7257 5.845985 ACACAATTCTACTCGTGTGATTG 57.154 39.130 9.46 15.41 43.23 2.67
6813 7258 5.297547 ACACAATTCTACTCGTGTGATTGT 58.702 37.500 16.25 16.25 43.23 2.71
6814 7259 5.758296 ACACAATTCTACTCGTGTGATTGTT 59.242 36.000 18.00 11.47 43.23 2.83
6815 7260 6.926826 ACACAATTCTACTCGTGTGATTGTTA 59.073 34.615 18.00 0.00 43.23 2.41
6820 7265 5.720202 TCTACTCGTGTGATTGTTAGCAAT 58.280 37.500 4.27 4.27 46.99 3.56
6834 7279 7.616103 TTGTTAGCAATCGTAACACAAAATG 57.384 32.000 0.00 0.00 39.53 2.32
6853 7298 3.274095 TGAACACACCATGAGTTGACA 57.726 42.857 0.00 0.00 31.51 3.58
6855 7300 3.565063 TGAACACACCATGAGTTGACATG 59.435 43.478 0.00 0.00 44.78 3.21
6858 7303 4.065088 ACACACCATGAGTTGACATGTAC 58.935 43.478 0.00 0.00 44.00 2.90
6860 7305 2.094258 CACCATGAGTTGACATGTACGC 59.906 50.000 0.00 0.00 44.00 4.42
6892 7337 7.655328 GGTTATTCTCATCTCAAGATCGTGATT 59.345 37.037 11.88 0.49 31.21 2.57
6903 7348 3.763902 AGATCGTGATTTCGAGTGACAG 58.236 45.455 0.00 0.00 43.00 3.51
6904 7349 3.191581 AGATCGTGATTTCGAGTGACAGT 59.808 43.478 0.00 0.00 43.00 3.55
6918 7363 7.431249 TCGAGTGACAGTTAAGAAGTGTATTT 58.569 34.615 0.00 0.00 44.73 1.40
6919 7364 7.924412 TCGAGTGACAGTTAAGAAGTGTATTTT 59.076 33.333 0.00 0.00 44.73 1.82
6978 7449 7.901029 AGAGAATAATGAGATTAAGGCATCGA 58.099 34.615 0.00 0.00 0.00 3.59
6981 7452 8.099537 AGAATAATGAGATTAAGGCATCGATGT 58.900 33.333 25.47 9.60 0.00 3.06
6984 7455 5.022282 TGAGATTAAGGCATCGATGTGAA 57.978 39.130 25.47 14.65 0.00 3.18
6986 7457 5.467735 TGAGATTAAGGCATCGATGTGAATG 59.532 40.000 25.47 1.90 0.00 2.67
6987 7458 3.969117 TTAAGGCATCGATGTGAATGC 57.031 42.857 25.47 12.37 39.15 3.56
6989 7460 2.048444 AGGCATCGATGTGAATGCTT 57.952 45.000 25.47 6.25 39.74 3.91
6991 7462 1.672363 GGCATCGATGTGAATGCTTCA 59.328 47.619 25.47 0.00 39.74 3.02
6992 7463 2.097954 GGCATCGATGTGAATGCTTCAA 59.902 45.455 25.47 0.00 42.15 2.69
7006 7480 8.804743 GTGAATGCTTCAACTGATGATTTAATG 58.195 33.333 0.96 0.00 42.15 1.90
7031 7505 9.499479 TGAATTGGTATATTTTGCACAAACATT 57.501 25.926 0.00 0.00 0.00 2.71
7035 7509 9.988815 TTGGTATATTTTGCACAAACATTTACT 57.011 25.926 0.00 0.00 0.00 2.24
7036 7510 9.988815 TGGTATATTTTGCACAAACATTTACTT 57.011 25.926 0.00 0.00 0.00 2.24
7040 7514 9.777297 ATATTTTGCACAAACATTTACTTCCTT 57.223 25.926 0.00 0.00 0.00 3.36
7041 7515 7.532682 TTTTGCACAAACATTTACTTCCTTC 57.467 32.000 0.00 0.00 0.00 3.46
7042 7516 4.854399 TGCACAAACATTTACTTCCTTCG 58.146 39.130 0.00 0.00 0.00 3.79
7043 7517 4.336993 TGCACAAACATTTACTTCCTTCGT 59.663 37.500 0.00 0.00 0.00 3.85
7044 7518 4.909880 GCACAAACATTTACTTCCTTCGTC 59.090 41.667 0.00 0.00 0.00 4.20
7045 7519 5.449304 CACAAACATTTACTTCCTTCGTCC 58.551 41.667 0.00 0.00 0.00 4.79
7046 7520 4.517832 ACAAACATTTACTTCCTTCGTCCC 59.482 41.667 0.00 0.00 0.00 4.46
7047 7521 4.360951 AACATTTACTTCCTTCGTCCCA 57.639 40.909 0.00 0.00 0.00 4.37
7048 7522 4.360951 ACATTTACTTCCTTCGTCCCAA 57.639 40.909 0.00 0.00 0.00 4.12
7049 7523 4.721132 ACATTTACTTCCTTCGTCCCAAA 58.279 39.130 0.00 0.00 0.00 3.28
7050 7524 5.134661 ACATTTACTTCCTTCGTCCCAAAA 58.865 37.500 0.00 0.00 0.00 2.44
7051 7525 5.773176 ACATTTACTTCCTTCGTCCCAAAAT 59.227 36.000 0.00 0.00 0.00 1.82
7052 7526 6.943718 ACATTTACTTCCTTCGTCCCAAAATA 59.056 34.615 0.00 0.00 0.00 1.40
7053 7527 7.449086 ACATTTACTTCCTTCGTCCCAAAATAA 59.551 33.333 0.00 0.00 0.00 1.40
7054 7528 7.443259 TTTACTTCCTTCGTCCCAAAATAAG 57.557 36.000 0.00 0.00 0.00 1.73
7055 7529 4.981812 ACTTCCTTCGTCCCAAAATAAGT 58.018 39.130 0.00 0.00 0.00 2.24
7056 7530 4.760204 ACTTCCTTCGTCCCAAAATAAGTG 59.240 41.667 0.00 0.00 0.00 3.16
7057 7531 4.360951 TCCTTCGTCCCAAAATAAGTGT 57.639 40.909 0.00 0.00 0.00 3.55
7058 7532 4.320870 TCCTTCGTCCCAAAATAAGTGTC 58.679 43.478 0.00 0.00 0.00 3.67
7059 7533 4.041198 TCCTTCGTCCCAAAATAAGTGTCT 59.959 41.667 0.00 0.00 0.00 3.41
7060 7534 4.760204 CCTTCGTCCCAAAATAAGTGTCTT 59.240 41.667 0.00 0.00 0.00 3.01
7061 7535 5.935789 CCTTCGTCCCAAAATAAGTGTCTTA 59.064 40.000 0.00 0.00 0.00 2.10
7062 7536 6.428771 CCTTCGTCCCAAAATAAGTGTCTTAA 59.571 38.462 0.00 0.00 0.00 1.85
7063 7537 6.790285 TCGTCCCAAAATAAGTGTCTTAAC 57.210 37.500 0.00 0.00 0.00 2.01
7064 7538 6.527423 TCGTCCCAAAATAAGTGTCTTAACT 58.473 36.000 0.00 0.00 0.00 2.24
7065 7539 6.647895 TCGTCCCAAAATAAGTGTCTTAACTC 59.352 38.462 0.00 0.00 0.00 3.01
7066 7540 6.649557 CGTCCCAAAATAAGTGTCTTAACTCT 59.350 38.462 0.00 0.00 0.00 3.24
7067 7541 7.816031 CGTCCCAAAATAAGTGTCTTAACTCTA 59.184 37.037 0.00 0.00 0.00 2.43
7068 7542 9.152595 GTCCCAAAATAAGTGTCTTAACTCTAG 57.847 37.037 0.00 0.00 0.00 2.43
7069 7543 8.877195 TCCCAAAATAAGTGTCTTAACTCTAGT 58.123 33.333 0.00 0.00 0.00 2.57
7122 7596 8.622948 AAAGACACTTATTTTAAGACAGAGGG 57.377 34.615 1.47 0.00 0.00 4.30
7123 7597 7.554959 AGACACTTATTTTAAGACAGAGGGA 57.445 36.000 1.47 0.00 0.00 4.20
7124 7598 7.616313 AGACACTTATTTTAAGACAGAGGGAG 58.384 38.462 1.47 0.00 0.00 4.30
7138 7612 3.967326 CAGAGGGAGTACCATGTCCATAA 59.033 47.826 0.00 0.00 43.89 1.90
7141 7615 3.458487 AGGGAGTACCATGTCCATAAACC 59.542 47.826 0.00 0.00 43.89 3.27
7148 7622 5.213868 ACCATGTCCATAAACCCCATAAA 57.786 39.130 0.00 0.00 0.00 1.40
7150 7624 4.039124 CCATGTCCATAAACCCCATAAAGC 59.961 45.833 0.00 0.00 0.00 3.51
7152 7626 3.284617 GTCCATAAACCCCATAAAGCGT 58.715 45.455 0.00 0.00 0.00 5.07
7164 7638 3.697045 CCATAAAGCGTTCCATGGGTTTA 59.303 43.478 13.02 9.00 39.52 2.01
7174 7648 2.562298 TCCATGGGTTTAAAGCAAGCAG 59.438 45.455 18.43 2.81 0.00 4.24
7199 7673 2.245159 ATGCAGTGTCATCGGTATGG 57.755 50.000 0.00 0.00 33.61 2.74
7208 7682 2.038557 GTCATCGGTATGGGTGCCTTAT 59.961 50.000 0.00 0.00 33.61 1.73
7210 7684 1.796017 TCGGTATGGGTGCCTTATGA 58.204 50.000 0.00 0.00 0.00 2.15
7233 7707 7.796838 TGAGTTTTCTAGTCATGAATTGTTCG 58.203 34.615 0.00 0.00 31.17 3.95
7234 7708 7.441157 TGAGTTTTCTAGTCATGAATTGTTCGT 59.559 33.333 0.00 0.00 31.17 3.85
7235 7709 7.797819 AGTTTTCTAGTCATGAATTGTTCGTC 58.202 34.615 0.00 0.00 0.00 4.20
7236 7710 7.657761 AGTTTTCTAGTCATGAATTGTTCGTCT 59.342 33.333 0.00 0.00 0.00 4.18
7237 7711 7.962964 TTTCTAGTCATGAATTGTTCGTCTT 57.037 32.000 0.00 0.00 0.00 3.01
7238 7712 7.582435 TTCTAGTCATGAATTGTTCGTCTTC 57.418 36.000 0.00 0.00 0.00 2.87
7239 7713 6.687604 TCTAGTCATGAATTGTTCGTCTTCA 58.312 36.000 0.00 0.00 33.75 3.02
7240 7714 5.852738 AGTCATGAATTGTTCGTCTTCAG 57.147 39.130 0.00 0.00 32.82 3.02
7241 7715 5.541845 AGTCATGAATTGTTCGTCTTCAGA 58.458 37.500 0.00 0.00 32.82 3.27
7242 7716 5.406780 AGTCATGAATTGTTCGTCTTCAGAC 59.593 40.000 0.00 0.00 41.47 3.51
7243 7717 4.690748 TCATGAATTGTTCGTCTTCAGACC 59.309 41.667 0.00 0.00 41.86 3.85
7244 7718 3.399330 TGAATTGTTCGTCTTCAGACCC 58.601 45.455 1.25 0.00 41.86 4.46
7245 7719 3.071023 TGAATTGTTCGTCTTCAGACCCT 59.929 43.478 1.25 0.00 41.86 4.34
7284 7772 6.012745 ACTCATCTGTAAAGAGGGCAAAATT 58.987 36.000 0.00 0.00 33.76 1.82
7285 7773 6.071728 ACTCATCTGTAAAGAGGGCAAAATTG 60.072 38.462 0.00 0.00 33.76 2.32
7286 7774 5.774690 TCATCTGTAAAGAGGGCAAAATTGT 59.225 36.000 0.00 0.00 0.00 2.71
7312 7800 4.265073 AGGATTGCCTTAATCACAGTCAC 58.735 43.478 0.00 0.00 43.90 3.67
7338 7826 4.499019 GGCCTTTGACAAGACGAAAATGAA 60.499 41.667 0.00 0.00 30.57 2.57
7339 7827 5.040635 GCCTTTGACAAGACGAAAATGAAA 58.959 37.500 0.00 0.00 30.57 2.69
7340 7828 5.051708 GCCTTTGACAAGACGAAAATGAAAC 60.052 40.000 0.00 0.00 30.57 2.78
7341 7829 6.033341 CCTTTGACAAGACGAAAATGAAACA 58.967 36.000 0.00 0.00 30.57 2.83
7342 7830 6.697019 CCTTTGACAAGACGAAAATGAAACAT 59.303 34.615 0.00 0.00 30.57 2.71
7376 7864 5.945784 TCTGATCATTGACAAAAACTAGGGG 59.054 40.000 0.00 0.00 0.00 4.79
7402 7890 9.444600 GTAAACTATTGAGTGGGAATGAACTAA 57.555 33.333 0.00 0.00 35.52 2.24
7415 7903 7.453126 TGGGAATGAACTAAGGAAAATGCTTTA 59.547 33.333 0.00 0.00 0.00 1.85
7419 7907 9.520515 AATGAACTAAGGAAAATGCTTTAGAGA 57.479 29.630 0.00 0.00 0.00 3.10
7424 7912 8.157476 ACTAAGGAAAATGCTTTAGAGACTCAA 58.843 33.333 5.02 0.00 0.00 3.02
7428 7916 7.821846 AGGAAAATGCTTTAGAGACTCAACTAG 59.178 37.037 5.02 0.00 0.00 2.57
7445 7933 4.130857 GCATTTGCGTCGACAACC 57.869 55.556 17.16 3.62 0.00 3.77
7446 7934 1.574428 GCATTTGCGTCGACAACCT 59.426 52.632 17.16 0.00 0.00 3.50
7447 7935 0.452784 GCATTTGCGTCGACAACCTC 60.453 55.000 17.16 0.00 0.00 3.85
7448 7936 0.165944 CATTTGCGTCGACAACCTCC 59.834 55.000 17.16 0.00 0.00 4.30
7449 7937 0.034896 ATTTGCGTCGACAACCTCCT 59.965 50.000 17.16 0.00 0.00 3.69
7450 7938 0.179067 TTTGCGTCGACAACCTCCTT 60.179 50.000 17.16 0.00 0.00 3.36
7451 7939 0.179067 TTGCGTCGACAACCTCCTTT 60.179 50.000 17.16 0.00 0.00 3.11
7452 7940 0.878523 TGCGTCGACAACCTCCTTTG 60.879 55.000 17.16 0.00 0.00 2.77
7453 7941 1.860078 CGTCGACAACCTCCTTTGC 59.140 57.895 17.16 0.00 0.00 3.68
7454 7942 0.878523 CGTCGACAACCTCCTTTGCA 60.879 55.000 17.16 0.00 0.00 4.08
7455 7943 1.523758 GTCGACAACCTCCTTTGCAT 58.476 50.000 11.55 0.00 0.00 3.96
7456 7944 1.197721 GTCGACAACCTCCTTTGCATG 59.802 52.381 11.55 0.00 0.00 4.06
7457 7945 0.109597 CGACAACCTCCTTTGCATGC 60.110 55.000 11.82 11.82 0.00 4.06
7458 7946 0.244721 GACAACCTCCTTTGCATGCC 59.755 55.000 16.68 0.00 0.00 4.40
7459 7947 0.469705 ACAACCTCCTTTGCATGCCA 60.470 50.000 16.68 0.00 0.00 4.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.182950 TCACTTTGCTTTTCTTGAGTGTTGA 59.817 36.000 0.00 0.00 36.70 3.18
1 2 5.401550 TCACTTTGCTTTTCTTGAGTGTTG 58.598 37.500 0.00 0.00 36.70 3.33
18 19 8.730680 CACCTAAACAGTTGCTTATATCACTTT 58.269 33.333 0.00 0.00 0.00 2.66
41 42 0.465460 TTGCAAGTGTCTCCACCACC 60.465 55.000 0.00 0.00 42.88 4.61
42 43 0.947244 CTTGCAAGTGTCTCCACCAC 59.053 55.000 18.65 0.00 42.88 4.16
48 49 3.325293 TGATCTCCTTGCAAGTGTCTC 57.675 47.619 24.35 15.35 0.00 3.36
62 63 3.416156 AGTGGAGGCAAAGTTTGATCTC 58.584 45.455 19.82 20.76 34.18 2.75
101 102 2.379972 GCTAGAGGTGAAGGTGCTCTA 58.620 52.381 0.00 0.00 0.00 2.43
140 141 9.696917 GACAAATTTCCATGTAAGACAAGAAAT 57.303 29.630 11.97 11.97 42.17 2.17
166 167 8.904099 ACGGAGGGAGTAATTTCTAATAAATG 57.096 34.615 0.00 0.00 0.00 2.32
243 244 9.915629 GTCGGAGAAATAGATGTATCTAAATGT 57.084 33.333 5.75 0.00 39.88 2.71
244 245 9.914131 TGTCGGAGAAATAGATGTATCTAAATG 57.086 33.333 5.75 0.00 39.88 2.32
246 247 9.967346 CTTGTCGGAGAAATAGATGTATCTAAA 57.033 33.333 5.75 0.00 39.88 1.85
247 248 9.132923 ACTTGTCGGAGAAATAGATGTATCTAA 57.867 33.333 5.75 0.00 39.88 2.10
248 249 8.693120 ACTTGTCGGAGAAATAGATGTATCTA 57.307 34.615 4.22 4.22 40.45 1.98
249 250 7.589958 ACTTGTCGGAGAAATAGATGTATCT 57.410 36.000 0.00 0.00 39.69 1.98
250 251 9.915629 AATACTTGTCGGAGAAATAGATGTATC 57.084 33.333 0.00 0.00 39.69 2.24
252 253 9.745880 GAAATACTTGTCGGAGAAATAGATGTA 57.254 33.333 0.00 0.00 39.69 2.29
253 254 8.478877 AGAAATACTTGTCGGAGAAATAGATGT 58.521 33.333 0.00 0.00 39.69 3.06
254 255 8.879342 AGAAATACTTGTCGGAGAAATAGATG 57.121 34.615 0.00 0.00 39.69 2.90
262 263 9.595823 CCTTATTTTAGAAATACTTGTCGGAGA 57.404 33.333 0.00 0.00 0.00 3.71
263 264 8.827677 CCCTTATTTTAGAAATACTTGTCGGAG 58.172 37.037 0.00 0.00 0.00 4.63
264 265 8.542080 TCCCTTATTTTAGAAATACTTGTCGGA 58.458 33.333 0.00 0.00 0.00 4.55
265 266 8.726870 TCCCTTATTTTAGAAATACTTGTCGG 57.273 34.615 0.00 0.00 0.00 4.79
266 267 9.379791 ACTCCCTTATTTTAGAAATACTTGTCG 57.620 33.333 0.00 0.00 0.00 4.35
354 355 9.872757 GAACAAAACGAGTGAATCTACATTTTA 57.127 29.630 0.00 0.00 0.00 1.52
355 356 8.621286 AGAACAAAACGAGTGAATCTACATTTT 58.379 29.630 0.00 0.00 0.00 1.82
356 357 8.154649 AGAACAAAACGAGTGAATCTACATTT 57.845 30.769 0.00 0.00 0.00 2.32
357 358 7.730364 AGAACAAAACGAGTGAATCTACATT 57.270 32.000 0.00 0.00 0.00 2.71
369 370 6.971184 ACGGACTACATATAGAACAAAACGAG 59.029 38.462 0.00 0.00 32.23 4.18
378 379 9.270640 GTCTTCTTAGACGGACTACATATAGAA 57.729 37.037 7.10 0.00 41.28 2.10
399 400 9.813446 TCCTTCCGTTTCTAAATATAAGTCTTC 57.187 33.333 0.00 0.00 0.00 2.87
420 421 7.093945 TGGCCATTTACAAATTTCTACTCCTTC 60.094 37.037 0.00 0.00 0.00 3.46
477 478 6.709018 ATAAGACATTTAATTTGGGACGGG 57.291 37.500 0.00 0.00 0.00 5.28
503 504 7.550597 TCTAGATACATCCGTACCTAGAGAA 57.449 40.000 0.41 0.00 43.31 2.87
539 542 5.740290 AGAAAATACTCCTTCCGTCTCAA 57.260 39.130 0.00 0.00 0.00 3.02
541 544 7.436430 AAAAAGAAAATACTCCTTCCGTCTC 57.564 36.000 0.00 0.00 0.00 3.36
687 694 0.306533 CGGTCGTGAAAGGTTGGTTG 59.693 55.000 0.00 0.00 0.00 3.77
755 763 4.760047 CCGGGTCTGGTTGCGGAG 62.760 72.222 0.00 0.00 0.00 4.63
853 863 3.010420 CGGAATCCAGAGGAAAAGGAAC 58.990 50.000 0.00 0.00 34.34 3.62
1151 1166 0.798776 CCAAGAACGCTACAGGCAAG 59.201 55.000 0.00 0.00 41.91 4.01
1158 1173 2.362717 AGATCTAGCCCAAGAACGCTAC 59.637 50.000 0.00 0.00 36.53 3.58
1199 1214 2.004583 TACATCCGTTTTGAGGAGCG 57.995 50.000 0.00 0.00 41.66 5.03
1247 1262 0.179067 TTCGTTGGAGGCTCAAACGT 60.179 50.000 40.64 0.00 0.00 3.99
1264 1279 4.396166 CACATACTTCCTTGTGTGGGATTC 59.604 45.833 0.00 0.00 38.69 2.52
1272 1288 5.862924 AAATCGACACATACTTCCTTGTG 57.137 39.130 0.00 1.74 46.76 3.33
1307 1327 2.573462 CGGGTCCATCCATCAATAGGAT 59.427 50.000 0.00 0.00 46.61 3.24
1327 1347 1.605710 AGGTACCGGACATATTCGTCG 59.394 52.381 9.46 0.00 36.73 5.12
1330 1350 2.100252 ACACAGGTACCGGACATATTCG 59.900 50.000 19.63 0.00 0.00 3.34
1331 1351 3.814005 ACACAGGTACCGGACATATTC 57.186 47.619 19.63 0.00 0.00 1.75
1335 1355 2.811410 TCTTACACAGGTACCGGACAT 58.189 47.619 19.63 5.93 0.00 3.06
1473 1495 3.245229 ACAGGGCCATTATCTTGTCACAA 60.245 43.478 6.18 0.00 0.00 3.33
1583 1606 7.362747 GCCTATATACACCACATGTCCTACTAC 60.363 44.444 0.00 0.00 42.09 2.73
1607 1630 1.866925 GACAAGCAACTACGGTGCC 59.133 57.895 0.00 0.00 0.00 5.01
1695 1719 9.048446 ACAAACACACTAAAACGTGTCTATAAT 57.952 29.630 0.00 0.00 45.74 1.28
1696 1720 8.422973 ACAAACACACTAAAACGTGTCTATAA 57.577 30.769 0.00 0.00 45.74 0.98
1761 1791 6.427150 CGTTCCAAATTATAAGATGTTCCGG 58.573 40.000 0.00 0.00 0.00 5.14
1763 1793 7.255139 CCTCCGTTCCAAATTATAAGATGTTCC 60.255 40.741 0.00 0.00 0.00 3.62
1764 1794 7.282450 ACCTCCGTTCCAAATTATAAGATGTTC 59.718 37.037 0.00 0.00 0.00 3.18
1776 1806 6.610425 AGTTAGATACTACCTCCGTTCCAAAT 59.390 38.462 0.00 0.00 34.56 2.32
1779 1809 5.121380 AGTTAGATACTACCTCCGTTCCA 57.879 43.478 0.00 0.00 34.56 3.53
1780 1810 7.592051 CATAAGTTAGATACTACCTCCGTTCC 58.408 42.308 0.00 0.00 35.54 3.62
1785 1815 7.449086 ACAGAGCATAAGTTAGATACTACCTCC 59.551 40.741 0.00 0.00 35.54 4.30
1788 1818 8.414778 ACAACAGAGCATAAGTTAGATACTACC 58.585 37.037 0.00 0.00 35.54 3.18
1790 1820 8.630917 GGACAACAGAGCATAAGTTAGATACTA 58.369 37.037 0.00 0.00 35.54 1.82
1796 1826 6.344500 AGATGGACAACAGAGCATAAGTTAG 58.656 40.000 0.00 0.00 0.00 2.34
1800 1830 6.519382 TGATAGATGGACAACAGAGCATAAG 58.481 40.000 0.00 0.00 0.00 1.73
1820 1850 6.707161 TGCAAGAATCGACATCAATCATGATA 59.293 34.615 9.04 0.00 44.53 2.15
1831 1861 3.313526 GCCATAACTGCAAGAATCGACAT 59.686 43.478 0.00 0.00 37.43 3.06
1884 1914 3.284197 ACGGAAGTTTCAGACACGG 57.716 52.632 0.00 0.00 46.40 4.94
1956 1986 1.664321 CTACAGGGTACGCTTCCGCT 61.664 60.000 10.17 0.00 38.22 5.52
1964 1994 4.205587 AGAGGATTACACTACAGGGTACG 58.794 47.826 0.00 0.00 0.00 3.67
2090 2120 9.030452 TGGAAAATAGTAAGGTTAAACATGCAT 57.970 29.630 0.00 0.00 0.00 3.96
2136 2167 7.990886 ACCAAACTATACTTCAAAGTTCAGACA 59.009 33.333 0.00 0.00 40.37 3.41
2191 2222 9.772973 TGATCAAATACTACACAAACTTGTACT 57.227 29.630 0.00 0.00 39.91 2.73
2198 2229 8.970691 AAATGCTGATCAAATACTACACAAAC 57.029 30.769 0.00 0.00 0.00 2.93
2251 2282 1.202510 GGACAAACTGCCACAATTGCA 60.203 47.619 5.05 0.00 37.17 4.08
2270 2301 3.520290 AGATGTGAATTTGCATGCTGG 57.480 42.857 20.33 0.00 0.00 4.85
2273 2353 6.897259 AATACAAGATGTGAATTTGCATGC 57.103 33.333 11.82 11.82 0.00 4.06
2402 2482 5.010933 TGAAAACAGGTAAACCACAGAACA 58.989 37.500 1.26 0.00 38.89 3.18
2834 2914 8.297426 CCATTTGATCATCAGAGTCAAATATGG 58.703 37.037 15.49 12.99 45.64 2.74
3343 3428 8.891671 ATGTGAAATTTGTCAGCTAAAATTGT 57.108 26.923 12.24 5.75 36.40 2.71
3619 3704 6.389906 ACCTAGCATATTTTGTTTCACAAGC 58.610 36.000 0.00 0.00 39.53 4.01
3646 3731 9.868277 GATGGGAGTAGTTCATGATAATAAGAG 57.132 37.037 0.00 0.00 0.00 2.85
3765 3850 3.503363 TCTGTGGCAGCAACTAAATCAAG 59.497 43.478 0.43 0.00 0.00 3.02
3979 4064 8.417884 GCCTGGGTAGATATAATCTTGATACTC 58.582 40.741 0.00 0.00 40.76 2.59
4209 4294 4.439057 TCTGGTTTCCACGCTGTATATTC 58.561 43.478 0.00 0.00 0.00 1.75
4455 4540 8.386264 ACTGAGATTCAAAAAGATAGGAGGAAA 58.614 33.333 0.00 0.00 0.00 3.13
4575 4660 5.813383 AGTTCAACATTCACATCAGGAGAT 58.187 37.500 0.00 0.00 33.87 2.75
4635 4720 5.221126 GCTGAATTTCAGTGTTCCTTTGTCT 60.221 40.000 23.66 0.00 45.94 3.41
5091 5179 9.974980 TTGTATTGTTAGGAAAAGAATCCAAAC 57.025 29.630 0.00 0.00 42.27 2.93
5167 5255 1.593196 TGCTCACCAACGAAAGAAGG 58.407 50.000 0.00 0.00 35.33 3.46
5228 5317 4.686554 GTGAGAACACGTCAGAAAGCTAAT 59.313 41.667 0.00 0.00 37.28 1.73
5440 5529 5.343325 CAGCACTGCGTGTACTGTATATATG 59.657 44.000 9.76 0.00 35.78 1.78
5512 5601 9.935682 GTACATCAGTTAATTCACAATACATGG 57.064 33.333 0.00 0.00 0.00 3.66
5533 5622 9.261180 CAGTAATCCGTGAAGAAATATGTACAT 57.739 33.333 13.93 13.93 0.00 2.29
5745 5836 4.695455 GGCTGTCACACTTTAGCAAGATTA 59.305 41.667 0.00 0.00 37.89 1.75
5749 5840 2.031682 GTGGCTGTCACACTTTAGCAAG 60.032 50.000 7.66 0.00 45.39 4.01
5777 5868 9.153721 GATGCCATGAAAAATAAATTGAAGTCA 57.846 29.630 0.00 0.00 0.00 3.41
5781 5872 8.441608 CAACGATGCCATGAAAAATAAATTGAA 58.558 29.630 0.00 0.00 0.00 2.69
5804 5906 4.642424 GGTAACTCGACAGTTTAGCAAC 57.358 45.455 0.00 0.00 40.16 4.17
5872 5974 3.426292 GCTCCACTTGCGTTTATCCTTTC 60.426 47.826 0.00 0.00 0.00 2.62
5876 5978 1.739067 AGCTCCACTTGCGTTTATCC 58.261 50.000 0.00 0.00 35.28 2.59
5888 5990 2.159254 TGACAAACAAGCAAAGCTCCAC 60.159 45.455 0.00 0.00 38.25 4.02
5935 6060 9.793245 CGACGTATTATTCTATTTGATGAAACC 57.207 33.333 0.00 0.00 0.00 3.27
5936 6061 9.793245 CCGACGTATTATTCTATTTGATGAAAC 57.207 33.333 0.00 0.00 0.00 2.78
5938 6063 7.654116 TGCCGACGTATTATTCTATTTGATGAA 59.346 33.333 0.00 0.00 0.00 2.57
5939 6064 7.149307 TGCCGACGTATTATTCTATTTGATGA 58.851 34.615 0.00 0.00 0.00 2.92
5940 6065 7.346208 TGCCGACGTATTATTCTATTTGATG 57.654 36.000 0.00 0.00 0.00 3.07
5941 6066 7.956420 TTGCCGACGTATTATTCTATTTGAT 57.044 32.000 0.00 0.00 0.00 2.57
5948 6073 2.861935 CCGTTTGCCGACGTATTATTCT 59.138 45.455 7.96 0.00 41.26 2.40
5960 6085 4.625972 ATCTTTAATAACCCGTTTGCCG 57.374 40.909 0.00 0.00 0.00 5.69
5962 6087 5.106442 CCCAATCTTTAATAACCCGTTTGC 58.894 41.667 0.00 0.00 0.00 3.68
5969 6094 6.715347 ATGAGCACCCAATCTTTAATAACC 57.285 37.500 0.00 0.00 0.00 2.85
6000 6125 2.602878 CTCGCGTACTCCTTAAGCAAA 58.397 47.619 5.77 0.00 35.06 3.68
6006 6131 2.291365 TGTATGCTCGCGTACTCCTTA 58.709 47.619 18.79 0.00 38.75 2.69
6016 6141 0.729116 ACATGCACTTGTATGCTCGC 59.271 50.000 7.17 0.00 46.28 5.03
6105 6393 7.238710 ACAGTTCCTACCATGGAAAAACTAAT 58.761 34.615 21.47 10.43 46.34 1.73
6110 6398 5.319043 AGACAGTTCCTACCATGGAAAAA 57.681 39.130 21.47 4.11 46.34 1.94
6118 6435 1.334160 TCGCAAGACAGTTCCTACCA 58.666 50.000 0.00 0.00 45.01 3.25
6172 6491 2.542595 TCAAAGAACTTCCGCTTTCGAC 59.457 45.455 0.00 0.00 38.10 4.20
6196 6558 4.264895 ACTGACTAGGTTAGGGTTGGAGAT 60.265 45.833 0.00 0.00 0.00 2.75
6237 6599 6.658831 TGCGCTTTATATTGCTTTAGCTAAG 58.341 36.000 9.73 2.74 42.66 2.18
6253 6615 1.735571 GATCCTCCGTTTTGCGCTTTA 59.264 47.619 9.73 0.00 39.71 1.85
6316 6681 8.662781 TGGATTTCTGTAAGCACATAGATAAC 57.337 34.615 0.00 0.00 33.14 1.89
6322 6687 8.800370 TTACATTGGATTTCTGTAAGCACATA 57.200 30.769 0.00 0.00 32.09 2.29
6394 6760 3.074687 AGAACAGGGTACTCAGAGTCTGA 59.925 47.826 21.46 21.46 38.25 3.27
6473 6839 2.575279 ACAGCTGTCCCATCTTCATCTT 59.425 45.455 15.25 0.00 0.00 2.40
6489 6894 5.003804 CCAATCCTACAAGTTTACACAGCT 58.996 41.667 0.00 0.00 0.00 4.24
6526 6931 2.366266 TCCTACAAGTTTACACAGCCGT 59.634 45.455 0.00 0.00 0.00 5.68
6527 6932 3.034721 TCCTACAAGTTTACACAGCCG 57.965 47.619 0.00 0.00 0.00 5.52
6528 6933 4.156008 CCAATCCTACAAGTTTACACAGCC 59.844 45.833 0.00 0.00 0.00 4.85
6529 6934 5.001232 TCCAATCCTACAAGTTTACACAGC 58.999 41.667 0.00 0.00 0.00 4.40
6530 6935 6.464222 TCTCCAATCCTACAAGTTTACACAG 58.536 40.000 0.00 0.00 0.00 3.66
6531 6936 6.428083 TCTCCAATCCTACAAGTTTACACA 57.572 37.500 0.00 0.00 0.00 3.72
6532 6937 7.103641 TCATCTCCAATCCTACAAGTTTACAC 58.896 38.462 0.00 0.00 0.00 2.90
6533 6938 7.252612 TCATCTCCAATCCTACAAGTTTACA 57.747 36.000 0.00 0.00 0.00 2.41
6534 6939 8.041323 TCTTCATCTCCAATCCTACAAGTTTAC 58.959 37.037 0.00 0.00 0.00 2.01
6535 6940 8.146053 TCTTCATCTCCAATCCTACAAGTTTA 57.854 34.615 0.00 0.00 0.00 2.01
6536 6941 7.020827 TCTTCATCTCCAATCCTACAAGTTT 57.979 36.000 0.00 0.00 0.00 2.66
6537 6942 6.627087 TCTTCATCTCCAATCCTACAAGTT 57.373 37.500 0.00 0.00 0.00 2.66
6538 6943 6.385176 TCATCTTCATCTCCAATCCTACAAGT 59.615 38.462 0.00 0.00 0.00 3.16
6539 6944 6.824553 TCATCTTCATCTCCAATCCTACAAG 58.175 40.000 0.00 0.00 0.00 3.16
6540 6945 6.385176 ACTCATCTTCATCTCCAATCCTACAA 59.615 38.462 0.00 0.00 0.00 2.41
6541 6946 5.901853 ACTCATCTTCATCTCCAATCCTACA 59.098 40.000 0.00 0.00 0.00 2.74
6542 6947 6.267471 AGACTCATCTTCATCTCCAATCCTAC 59.733 42.308 0.00 0.00 0.00 3.18
6543 6948 6.380414 AGACTCATCTTCATCTCCAATCCTA 58.620 40.000 0.00 0.00 0.00 2.94
6544 6949 5.218179 AGACTCATCTTCATCTCCAATCCT 58.782 41.667 0.00 0.00 0.00 3.24
6545 6950 5.549742 AGACTCATCTTCATCTCCAATCC 57.450 43.478 0.00 0.00 0.00 3.01
6546 6951 7.603404 CCATAAGACTCATCTTCATCTCCAATC 59.397 40.741 0.00 0.00 41.63 2.67
6547 6952 7.451732 CCATAAGACTCATCTTCATCTCCAAT 58.548 38.462 0.00 0.00 41.63 3.16
6548 6953 6.183361 CCCATAAGACTCATCTTCATCTCCAA 60.183 42.308 0.00 0.00 41.63 3.53
6549 6954 5.306419 CCCATAAGACTCATCTTCATCTCCA 59.694 44.000 0.00 0.00 41.63 3.86
6550 6955 5.306678 ACCCATAAGACTCATCTTCATCTCC 59.693 44.000 0.00 0.00 41.63 3.71
6551 6956 6.418057 ACCCATAAGACTCATCTTCATCTC 57.582 41.667 0.00 0.00 41.63 2.75
6552 6957 5.306678 GGACCCATAAGACTCATCTTCATCT 59.693 44.000 0.00 0.00 41.63 2.90
6553 6958 5.070981 TGGACCCATAAGACTCATCTTCATC 59.929 44.000 0.00 0.00 41.63 2.92
6554 6959 4.971282 TGGACCCATAAGACTCATCTTCAT 59.029 41.667 0.00 0.00 41.63 2.57
6555 6960 4.361783 TGGACCCATAAGACTCATCTTCA 58.638 43.478 0.00 0.00 41.63 3.02
6556 6961 5.359194 TTGGACCCATAAGACTCATCTTC 57.641 43.478 0.00 0.00 41.63 2.87
6558 6963 4.971282 TCATTGGACCCATAAGACTCATCT 59.029 41.667 0.00 0.00 36.42 2.90
6559 6964 5.296151 TCATTGGACCCATAAGACTCATC 57.704 43.478 0.00 0.00 0.00 2.92
6560 6965 5.688807 CTTCATTGGACCCATAAGACTCAT 58.311 41.667 0.00 0.00 0.00 2.90
6561 6966 4.626287 GCTTCATTGGACCCATAAGACTCA 60.626 45.833 9.24 0.00 0.00 3.41
6562 6967 3.879892 GCTTCATTGGACCCATAAGACTC 59.120 47.826 9.24 0.00 0.00 3.36
6563 6968 3.266772 TGCTTCATTGGACCCATAAGACT 59.733 43.478 9.24 0.00 0.00 3.24
6564 6969 3.620488 TGCTTCATTGGACCCATAAGAC 58.380 45.455 9.24 3.85 0.00 3.01
6605 7010 8.821686 TTGGTAAATCCATCACACATCTTAAT 57.178 30.769 0.00 0.00 46.60 1.40
6607 7012 6.828273 CCTTGGTAAATCCATCACACATCTTA 59.172 38.462 0.00 0.00 46.60 2.10
6608 7013 5.653769 CCTTGGTAAATCCATCACACATCTT 59.346 40.000 0.00 0.00 46.60 2.40
6609 7014 5.044919 TCCTTGGTAAATCCATCACACATCT 60.045 40.000 0.00 0.00 46.60 2.90
6650 7067 5.772521 AGGATTCTTTTGAACATCGTTTGG 58.227 37.500 0.00 0.00 41.77 3.28
6654 7071 6.072673 GGTACAAGGATTCTTTTGAACATCGT 60.073 38.462 0.00 0.00 41.77 3.73
6655 7072 6.314784 GGTACAAGGATTCTTTTGAACATCG 58.685 40.000 0.00 0.00 41.77 3.84
6656 7073 6.208599 TGGGTACAAGGATTCTTTTGAACATC 59.791 38.462 0.00 0.00 41.77 3.06
6657 7074 6.015434 GTGGGTACAAGGATTCTTTTGAACAT 60.015 38.462 0.00 0.00 41.77 2.71
6658 7075 5.300792 GTGGGTACAAGGATTCTTTTGAACA 59.699 40.000 0.00 0.00 41.77 3.18
6766 7211 5.780984 ACGGTTTGTTTTCTTGTGGTAAAA 58.219 33.333 0.00 0.00 0.00 1.52
6789 7234 6.452242 ACAATCACACGAGTAGAATTGTGTA 58.548 36.000 14.92 0.00 44.33 2.90
6810 7255 7.418408 TCATTTTGTGTTACGATTGCTAACAA 58.582 30.769 8.71 0.00 36.18 2.83
6812 7257 7.377397 TGTTCATTTTGTGTTACGATTGCTAAC 59.623 33.333 0.00 0.00 0.00 2.34
6813 7258 7.377397 GTGTTCATTTTGTGTTACGATTGCTAA 59.623 33.333 0.00 0.00 0.00 3.09
6814 7259 6.853872 GTGTTCATTTTGTGTTACGATTGCTA 59.146 34.615 0.00 0.00 0.00 3.49
6815 7260 5.685511 GTGTTCATTTTGTGTTACGATTGCT 59.314 36.000 0.00 0.00 0.00 3.91
6820 7265 4.395231 TGGTGTGTTCATTTTGTGTTACGA 59.605 37.500 0.00 0.00 0.00 3.43
6821 7266 4.663166 TGGTGTGTTCATTTTGTGTTACG 58.337 39.130 0.00 0.00 0.00 3.18
6834 7279 3.565482 ACATGTCAACTCATGGTGTGTTC 59.435 43.478 10.64 0.00 46.39 3.18
6853 7298 4.056050 GAGAATAACCAATCCGCGTACAT 58.944 43.478 4.92 0.00 0.00 2.29
6855 7300 3.450578 TGAGAATAACCAATCCGCGTAC 58.549 45.455 4.92 0.00 0.00 3.67
6858 7303 3.393800 AGATGAGAATAACCAATCCGCG 58.606 45.455 0.00 0.00 0.00 6.46
6860 7305 6.283694 TCTTGAGATGAGAATAACCAATCCG 58.716 40.000 0.00 0.00 0.00 4.18
6892 7337 5.258456 ACACTTCTTAACTGTCACTCGAA 57.742 39.130 0.00 0.00 0.00 3.71
6986 7457 8.814235 CCAATTCATTAAATCATCAGTTGAAGC 58.186 33.333 0.00 0.00 38.03 3.86
6987 7458 9.865321 ACCAATTCATTAAATCATCAGTTGAAG 57.135 29.630 0.00 0.00 38.03 3.02
7031 7505 6.428771 CACTTATTTTGGGACGAAGGAAGTAA 59.571 38.462 0.00 0.00 0.00 2.24
7032 7506 5.935789 CACTTATTTTGGGACGAAGGAAGTA 59.064 40.000 0.00 0.00 0.00 2.24
7033 7507 4.760204 CACTTATTTTGGGACGAAGGAAGT 59.240 41.667 0.00 0.00 0.00 3.01
7034 7508 4.760204 ACACTTATTTTGGGACGAAGGAAG 59.240 41.667 0.00 0.00 0.00 3.46
7035 7509 4.721132 ACACTTATTTTGGGACGAAGGAA 58.279 39.130 0.00 0.00 0.00 3.36
7036 7510 4.041198 AGACACTTATTTTGGGACGAAGGA 59.959 41.667 0.00 0.00 0.00 3.36
7037 7511 4.324267 AGACACTTATTTTGGGACGAAGG 58.676 43.478 0.00 0.00 0.00 3.46
7038 7512 5.941948 AAGACACTTATTTTGGGACGAAG 57.058 39.130 0.00 0.00 0.00 3.79
7039 7513 6.993902 AGTTAAGACACTTATTTTGGGACGAA 59.006 34.615 0.00 0.00 0.00 3.85
7040 7514 6.527423 AGTTAAGACACTTATTTTGGGACGA 58.473 36.000 0.00 0.00 0.00 4.20
7041 7515 6.649557 AGAGTTAAGACACTTATTTTGGGACG 59.350 38.462 0.00 0.00 0.00 4.79
7042 7516 7.981102 AGAGTTAAGACACTTATTTTGGGAC 57.019 36.000 0.00 0.00 0.00 4.46
7043 7517 8.877195 ACTAGAGTTAAGACACTTATTTTGGGA 58.123 33.333 0.00 0.00 0.00 4.37
7096 7570 9.720769 CCCTCTGTCTTAAAATAAGTGTCTTTA 57.279 33.333 0.00 0.00 0.00 1.85
7097 7571 8.437575 TCCCTCTGTCTTAAAATAAGTGTCTTT 58.562 33.333 0.00 0.00 0.00 2.52
7098 7572 7.974504 TCCCTCTGTCTTAAAATAAGTGTCTT 58.025 34.615 0.00 0.00 0.00 3.01
7099 7573 7.235812 ACTCCCTCTGTCTTAAAATAAGTGTCT 59.764 37.037 0.00 0.00 0.00 3.41
7100 7574 7.387643 ACTCCCTCTGTCTTAAAATAAGTGTC 58.612 38.462 0.00 0.00 0.00 3.67
7101 7575 7.317722 ACTCCCTCTGTCTTAAAATAAGTGT 57.682 36.000 0.00 0.00 0.00 3.55
7102 7576 7.764901 GGTACTCCCTCTGTCTTAAAATAAGTG 59.235 40.741 0.00 0.00 0.00 3.16
7103 7577 7.456902 TGGTACTCCCTCTGTCTTAAAATAAGT 59.543 37.037 0.00 0.00 0.00 2.24
7104 7578 7.848128 TGGTACTCCCTCTGTCTTAAAATAAG 58.152 38.462 0.00 0.00 0.00 1.73
7105 7579 7.801893 TGGTACTCCCTCTGTCTTAAAATAA 57.198 36.000 0.00 0.00 0.00 1.40
7106 7580 7.402071 ACATGGTACTCCCTCTGTCTTAAAATA 59.598 37.037 0.00 0.00 0.00 1.40
7107 7581 6.215636 ACATGGTACTCCCTCTGTCTTAAAAT 59.784 38.462 0.00 0.00 0.00 1.82
7108 7582 5.546499 ACATGGTACTCCCTCTGTCTTAAAA 59.454 40.000 0.00 0.00 0.00 1.52
7109 7583 5.091552 ACATGGTACTCCCTCTGTCTTAAA 58.908 41.667 0.00 0.00 0.00 1.52
7110 7584 4.684724 ACATGGTACTCCCTCTGTCTTAA 58.315 43.478 0.00 0.00 0.00 1.85
7111 7585 4.279145 GACATGGTACTCCCTCTGTCTTA 58.721 47.826 0.00 0.00 40.52 2.10
7112 7586 3.100671 GACATGGTACTCCCTCTGTCTT 58.899 50.000 0.00 0.00 40.52 3.01
7113 7587 2.624557 GGACATGGTACTCCCTCTGTCT 60.625 54.545 0.00 0.00 42.00 3.41
7114 7588 1.757699 GGACATGGTACTCCCTCTGTC 59.242 57.143 0.00 0.00 41.79 3.51
7115 7589 1.078823 TGGACATGGTACTCCCTCTGT 59.921 52.381 0.00 0.00 33.97 3.41
7116 7590 1.866015 TGGACATGGTACTCCCTCTG 58.134 55.000 0.00 0.00 0.00 3.35
7117 7591 2.877154 ATGGACATGGTACTCCCTCT 57.123 50.000 0.00 0.00 0.00 3.69
7118 7592 4.444449 GGTTTATGGACATGGTACTCCCTC 60.444 50.000 0.00 0.00 0.00 4.30
7119 7593 3.458487 GGTTTATGGACATGGTACTCCCT 59.542 47.826 0.00 0.00 0.00 4.20
7120 7594 3.434596 GGGTTTATGGACATGGTACTCCC 60.435 52.174 0.00 0.00 0.00 4.30
7121 7595 3.434596 GGGGTTTATGGACATGGTACTCC 60.435 52.174 0.00 0.00 0.00 3.85
7122 7596 3.201266 TGGGGTTTATGGACATGGTACTC 59.799 47.826 0.00 0.00 0.00 2.59
7123 7597 3.194620 TGGGGTTTATGGACATGGTACT 58.805 45.455 0.00 0.00 0.00 2.73
7124 7598 3.655615 TGGGGTTTATGGACATGGTAC 57.344 47.619 0.00 0.00 0.00 3.34
7138 7612 2.099405 CATGGAACGCTTTATGGGGTT 58.901 47.619 0.00 0.00 43.34 4.11
7148 7622 1.544246 GCTTTAAACCCATGGAACGCT 59.456 47.619 15.22 0.00 0.00 5.07
7150 7624 3.574614 CTTGCTTTAAACCCATGGAACG 58.425 45.455 15.22 0.00 0.00 3.95
7152 7626 2.968574 TGCTTGCTTTAAACCCATGGAA 59.031 40.909 15.22 0.00 0.00 3.53
7164 7638 1.792006 GCATTCTTGCTGCTTGCTTT 58.208 45.000 0.00 0.00 45.77 3.51
7174 7648 7.695540 CATACCGATGACACTGCATTCTTGC 62.696 48.000 0.00 0.00 41.42 4.01
7178 7652 2.545526 CCATACCGATGACACTGCATTC 59.454 50.000 0.00 0.00 34.73 2.67
7182 7656 0.178068 ACCCATACCGATGACACTGC 59.822 55.000 0.00 0.00 34.73 4.40
7199 7673 5.488341 TGACTAGAAAACTCATAAGGCACC 58.512 41.667 0.00 0.00 0.00 5.01
7208 7682 7.441157 ACGAACAATTCATGACTAGAAAACTCA 59.559 33.333 0.00 0.00 0.00 3.41
7210 7684 7.657761 AGACGAACAATTCATGACTAGAAAACT 59.342 33.333 0.00 0.00 0.00 2.66
7265 7753 4.522789 GGACAATTTTGCCCTCTTTACAGA 59.477 41.667 0.00 0.00 0.00 3.41
7291 7779 4.009675 TGTGACTGTGATTAAGGCAATCC 58.990 43.478 0.00 0.00 42.17 3.01
7292 7780 5.392380 CCTTGTGACTGTGATTAAGGCAATC 60.392 44.000 0.00 0.00 43.01 2.67
7312 7800 1.593196 TCGTCTTGTCAAAGGCCTTG 58.407 50.000 21.33 13.47 34.31 3.61
7317 7805 6.033341 TGTTTCATTTTCGTCTTGTCAAAGG 58.967 36.000 0.00 0.00 33.90 3.11
7339 7827 9.234827 TGTCAATGATCAGAAATGTTCTTATGT 57.765 29.630 0.09 0.00 38.11 2.29
7376 7864 7.923414 AGTTCATTCCCACTCAATAGTTTAC 57.077 36.000 0.00 0.00 31.97 2.01
7402 7890 6.538263 AGTTGAGTCTCTAAAGCATTTTCCT 58.462 36.000 0.65 0.00 40.09 3.36
7415 7903 3.257393 CGCAAATGCTAGTTGAGTCTCT 58.743 45.455 3.63 0.00 39.32 3.10
7419 7907 1.726791 CGACGCAAATGCTAGTTGAGT 59.273 47.619 3.63 5.70 40.99 3.41
7424 7912 1.459592 GTTGTCGACGCAAATGCTAGT 59.540 47.619 11.62 0.00 39.32 2.57
7428 7916 0.452784 GAGGTTGTCGACGCAAATGC 60.453 55.000 11.62 0.00 37.78 3.56
7439 7927 0.244721 GGCATGCAAAGGAGGTTGTC 59.755 55.000 21.36 0.00 0.00 3.18
7442 7930 4.950200 TGGCATGCAAAGGAGGTT 57.050 50.000 21.36 0.00 0.00 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.