Multiple sequence alignment - TraesCS7D01G169400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G169400 chr7D 100.000 5637 0 0 1 5637 120320604 120326240 0.000000e+00 10410.0
1 TraesCS7D01G169400 chr7D 91.519 566 40 6 5 564 55124960 55125523 0.000000e+00 773.0
2 TraesCS7D01G169400 chr7D 92.143 280 21 1 3777 4055 539382082 539381803 1.470000e-105 394.0
3 TraesCS7D01G169400 chr7D 88.636 264 23 5 309 566 623723173 623722911 1.180000e-81 315.0
4 TraesCS7D01G169400 chr7A 94.402 2644 91 21 2356 4980 125264105 125266710 0.000000e+00 4010.0
5 TraesCS7D01G169400 chr7A 93.847 1739 39 17 607 2300 125262391 125264106 0.000000e+00 2556.0
6 TraesCS7D01G169400 chr7B 93.722 1991 84 12 2960 4920 81692831 81694810 0.000000e+00 2946.0
7 TraesCS7D01G169400 chr7B 95.742 1409 21 9 607 1981 81690648 81692051 0.000000e+00 2233.0
8 TraesCS7D01G169400 chr7B 94.434 539 22 4 2345 2877 81692294 81692830 0.000000e+00 822.0
9 TraesCS7D01G169400 chr7B 89.878 573 48 6 1 566 585518666 585519235 0.000000e+00 728.0
10 TraesCS7D01G169400 chr7B 91.795 195 16 0 1981 2175 81692100 81692294 7.200000e-69 272.0
11 TraesCS7D01G169400 chr7B 81.651 109 9 9 5416 5524 201524065 201523968 4.680000e-11 80.5
12 TraesCS7D01G169400 chr6A 90.459 566 36 5 4 564 79696531 79695979 0.000000e+00 730.0
13 TraesCS7D01G169400 chr6A 85.984 635 86 3 1040 1671 562377879 562377245 0.000000e+00 676.0
14 TraesCS7D01G169400 chr6A 89.527 296 31 0 3776 4071 503240926 503241221 5.330000e-100 375.0
15 TraesCS7D01G169400 chr6A 91.908 173 9 1 2871 3038 559732674 559732846 2.630000e-58 237.0
16 TraesCS7D01G169400 chr6A 82.305 243 32 8 309 545 20336390 20336627 3.440000e-47 200.0
17 TraesCS7D01G169400 chr6A 80.751 213 34 7 358 566 21946653 21946444 5.850000e-35 159.0
18 TraesCS7D01G169400 chr6B 86.416 611 82 1 1061 1670 631203475 631202865 0.000000e+00 667.0
19 TraesCS7D01G169400 chr6B 85.993 614 85 1 1058 1670 630846918 630847531 0.000000e+00 656.0
20 TraesCS7D01G169400 chr6B 81.731 104 12 7 5457 5556 3747787 3747687 4.680000e-11 80.5
21 TraesCS7D01G169400 chr6D 86.066 610 85 0 1062 1671 418742534 418741925 0.000000e+00 656.0
22 TraesCS7D01G169400 chr6D 92.884 267 19 0 3781 4047 251231695 251231961 6.850000e-104 388.0
23 TraesCS7D01G169400 chr6D 86.859 312 34 5 257 564 85910115 85910423 5.410000e-90 342.0
24 TraesCS7D01G169400 chr1A 89.610 385 32 5 4 382 211990130 211989748 3.050000e-132 483.0
25 TraesCS7D01G169400 chr1A 92.884 267 19 0 3781 4047 540723172 540722906 6.850000e-104 388.0
26 TraesCS7D01G169400 chr1A 90.345 290 28 0 3779 4068 497854750 497855039 1.150000e-101 381.0
27 TraesCS7D01G169400 chr1A 90.270 185 14 4 391 572 211851337 211851154 7.300000e-59 239.0
28 TraesCS7D01G169400 chr1A 82.524 206 30 6 362 564 111590535 111590737 5.800000e-40 176.0
29 TraesCS7D01G169400 chr1A 82.090 67 10 2 499 564 578566593 578566658 7.890000e-04 56.5
30 TraesCS7D01G169400 chr3A 91.489 282 22 2 3775 4055 151313252 151313532 2.460000e-103 387.0
31 TraesCS7D01G169400 chr3A 93.939 165 7 1 2871 3032 699981620 699981784 4.360000e-61 246.0
32 TraesCS7D01G169400 chr4D 90.068 292 27 2 3780 4069 508709705 508709414 1.480000e-100 377.0
33 TraesCS7D01G169400 chr4D 92.308 182 10 4 2860 3039 220360625 220360446 7.250000e-64 255.0
34 TraesCS7D01G169400 chr4D 90.385 52 5 0 2478 2529 488649878 488649827 1.010000e-07 69.4
35 TraesCS7D01G169400 chr3D 84.639 332 28 8 3771 4081 588147810 588148139 5.480000e-80 309.0
36 TraesCS7D01G169400 chr3D 87.356 261 23 7 309 564 594965944 594965689 1.990000e-74 291.0
37 TraesCS7D01G169400 chr5A 86.038 265 29 5 309 567 64659149 64659411 1.550000e-70 278.0
38 TraesCS7D01G169400 chr5A 97.059 34 1 0 2501 2534 670405699 670405666 2.190000e-04 58.4
39 TraesCS7D01G169400 chr2A 87.983 233 28 0 3805 4037 317164640 317164872 5.560000e-70 276.0
40 TraesCS7D01G169400 chr2A 95.152 165 3 1 2871 3030 437970442 437970606 7.250000e-64 255.0
41 TraesCS7D01G169400 chr2A 85.227 88 8 5 5453 5537 59575647 59575732 1.010000e-12 86.1
42 TraesCS7D01G169400 chr5B 95.181 166 7 1 2871 3035 550926514 550926349 1.560000e-65 261.0
43 TraesCS7D01G169400 chr5B 92.771 166 10 2 2872 3036 1751180 1751344 7.300000e-59 239.0
44 TraesCS7D01G169400 chr5B 81.651 109 9 9 5416 5524 319895805 319895902 4.680000e-11 80.5
45 TraesCS7D01G169400 chr1D 85.019 267 21 7 309 567 407863974 407863719 2.610000e-63 254.0
46 TraesCS7D01G169400 chr1D 85.532 235 24 5 309 539 102531283 102531055 2.630000e-58 237.0
47 TraesCS7D01G169400 chr4B 94.012 167 9 1 2870 3036 24565236 24565071 9.380000e-63 252.0
48 TraesCS7D01G169400 chr4B 80.159 126 15 8 5436 5556 184158524 184158644 1.010000e-12 86.1
49 TraesCS7D01G169400 chr4A 90.449 178 12 2 2865 3039 674590151 674590326 4.390000e-56 230.0
50 TraesCS7D01G169400 chr4A 81.818 110 12 7 5452 5556 706565556 706565662 1.010000e-12 86.1
51 TraesCS7D01G169400 chr2B 86.449 214 23 4 309 518 108507498 108507287 4.390000e-56 230.0
52 TraesCS7D01G169400 chr2B 89.189 74 4 4 5457 5527 627716408 627716480 7.780000e-14 89.8
53 TraesCS7D01G169400 chr2B 81.651 109 9 10 5416 5524 73669720 73669817 4.680000e-11 80.5
54 TraesCS7D01G169400 chr3B 80.392 255 46 3 317 568 156911120 156911373 2.070000e-44 191.0
55 TraesCS7D01G169400 chr3B 97.143 35 0 1 5347 5381 31865309 31865276 2.190000e-04 58.4
56 TraesCS7D01G169400 chr1B 80.909 110 13 7 5452 5556 266334095 266334201 4.680000e-11 80.5
57 TraesCS7D01G169400 chr5D 97.059 34 0 1 5347 5380 445510037 445510005 7.890000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G169400 chr7D 120320604 120326240 5636 False 10410.00 10410 100.00000 1 5637 1 chr7D.!!$F2 5636
1 TraesCS7D01G169400 chr7D 55124960 55125523 563 False 773.00 773 91.51900 5 564 1 chr7D.!!$F1 559
2 TraesCS7D01G169400 chr7A 125262391 125266710 4319 False 3283.00 4010 94.12450 607 4980 2 chr7A.!!$F1 4373
3 TraesCS7D01G169400 chr7B 81690648 81694810 4162 False 1568.25 2946 93.92325 607 4920 4 chr7B.!!$F2 4313
4 TraesCS7D01G169400 chr7B 585518666 585519235 569 False 728.00 728 89.87800 1 566 1 chr7B.!!$F1 565
5 TraesCS7D01G169400 chr6A 79695979 79696531 552 True 730.00 730 90.45900 4 564 1 chr6A.!!$R2 560
6 TraesCS7D01G169400 chr6A 562377245 562377879 634 True 676.00 676 85.98400 1040 1671 1 chr6A.!!$R3 631
7 TraesCS7D01G169400 chr6B 631202865 631203475 610 True 667.00 667 86.41600 1061 1670 1 chr6B.!!$R2 609
8 TraesCS7D01G169400 chr6B 630846918 630847531 613 False 656.00 656 85.99300 1058 1670 1 chr6B.!!$F1 612
9 TraesCS7D01G169400 chr6D 418741925 418742534 609 True 656.00 656 86.06600 1062 1671 1 chr6D.!!$R1 609

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
600 610 0.095417 GCTCACGACCGAATGCTTTC 59.905 55.0 2.28 2.28 0.00 2.62 F
2119 2240 0.179004 AGTTGGCGGTTGGATGACAA 60.179 50.0 0.00 0.00 36.54 3.18 F
2352 2475 0.035152 TGTATGCCTTCCTGCCACAG 60.035 55.0 0.00 0.00 0.00 3.66 F
2636 2770 0.037590 TTGGTGAGGTACATGTGGCC 59.962 55.0 9.11 10.79 0.00 5.36 F
2638 2772 0.255890 GGTGAGGTACATGTGGCCAT 59.744 55.0 9.72 0.00 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2348 2471 0.168348 GCTGCACTGAGAATGCTGTG 59.832 55.000 0.00 0.00 43.77 3.66 R
3485 3632 1.286354 TGCTTCCGTTAACGAAGCCG 61.286 55.000 35.12 21.15 44.17 5.52 R
4197 4379 1.529865 GTACGTTGAAACCTGGCAGTC 59.470 52.381 14.43 5.17 0.00 3.51 R
4540 4724 1.493871 CCAGCAAGAGAATGGGAGGAT 59.506 52.381 0.00 0.00 0.00 3.24 R
4664 4848 1.480498 GGGCCCCATCCGATACAAATT 60.480 52.381 12.23 0.00 0.00 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
284 291 2.437281 GGCATGGATGAGGAGAGAGAAA 59.563 50.000 0.00 0.00 0.00 2.52
374 384 3.134792 GCAGCGGACGAGGAGAGA 61.135 66.667 0.00 0.00 0.00 3.10
385 395 1.797348 CGAGGAGAGAAGAGAAAGCGC 60.797 57.143 0.00 0.00 0.00 5.92
433 443 1.339610 TGCAACCCAAATTTGAGACGG 59.660 47.619 19.86 13.78 0.00 4.79
477 487 6.255887 ACAAAACGGACGCAAAATAAAAATGA 59.744 30.769 0.00 0.00 0.00 2.57
478 488 6.830114 AAACGGACGCAAAATAAAAATGAA 57.170 29.167 0.00 0.00 0.00 2.57
492 502 2.496899 AATGAATCTCTGCGTTGGGT 57.503 45.000 0.00 0.00 0.00 4.51
522 532 2.433491 CCGCACCGATCCAAACGA 60.433 61.111 0.00 0.00 0.00 3.85
523 533 2.452813 CCGCACCGATCCAAACGAG 61.453 63.158 0.00 0.00 0.00 4.18
566 576 2.229062 GCCCCTTTGAAGTTGCTCTAAC 59.771 50.000 0.00 0.00 39.65 2.34
567 577 2.820197 CCCCTTTGAAGTTGCTCTAACC 59.180 50.000 0.00 0.00 40.24 2.85
568 578 3.486383 CCCTTTGAAGTTGCTCTAACCA 58.514 45.455 0.00 0.00 40.24 3.67
569 579 4.082125 CCCTTTGAAGTTGCTCTAACCAT 58.918 43.478 0.00 0.00 40.24 3.55
570 580 4.156739 CCCTTTGAAGTTGCTCTAACCATC 59.843 45.833 0.00 0.00 40.24 3.51
571 581 5.006386 CCTTTGAAGTTGCTCTAACCATCT 58.994 41.667 0.00 0.00 40.24 2.90
572 582 6.173339 CCTTTGAAGTTGCTCTAACCATCTA 58.827 40.000 0.00 0.00 40.24 1.98
573 583 6.655003 CCTTTGAAGTTGCTCTAACCATCTAA 59.345 38.462 0.00 0.00 40.24 2.10
574 584 7.337942 CCTTTGAAGTTGCTCTAACCATCTAAT 59.662 37.037 0.00 0.00 40.24 1.73
575 585 7.849804 TTGAAGTTGCTCTAACCATCTAATC 57.150 36.000 0.00 0.00 40.24 1.75
576 586 6.946340 TGAAGTTGCTCTAACCATCTAATCA 58.054 36.000 0.00 0.00 40.24 2.57
577 587 7.044181 TGAAGTTGCTCTAACCATCTAATCAG 58.956 38.462 0.00 0.00 40.24 2.90
578 588 6.552445 AGTTGCTCTAACCATCTAATCAGT 57.448 37.500 0.00 0.00 40.24 3.41
579 589 6.951971 AGTTGCTCTAACCATCTAATCAGTT 58.048 36.000 0.00 0.00 40.24 3.16
580 590 7.044798 AGTTGCTCTAACCATCTAATCAGTTC 58.955 38.462 0.00 0.00 40.24 3.01
581 591 5.592054 TGCTCTAACCATCTAATCAGTTCG 58.408 41.667 0.00 0.00 0.00 3.95
582 592 4.446051 GCTCTAACCATCTAATCAGTTCGC 59.554 45.833 0.00 0.00 0.00 4.70
583 593 5.737635 GCTCTAACCATCTAATCAGTTCGCT 60.738 44.000 0.00 0.00 0.00 4.93
584 594 5.833082 TCTAACCATCTAATCAGTTCGCTC 58.167 41.667 0.00 0.00 0.00 5.03
585 595 4.471904 AACCATCTAATCAGTTCGCTCA 57.528 40.909 0.00 0.00 0.00 4.26
586 596 3.786635 ACCATCTAATCAGTTCGCTCAC 58.213 45.455 0.00 0.00 0.00 3.51
587 597 2.791560 CCATCTAATCAGTTCGCTCACG 59.208 50.000 0.00 0.00 42.01 4.35
596 606 2.506217 TCGCTCACGACCGAATGC 60.506 61.111 0.00 0.00 45.12 3.56
597 607 2.507102 CGCTCACGACCGAATGCT 60.507 61.111 0.00 0.00 43.93 3.79
598 608 2.094659 CGCTCACGACCGAATGCTT 61.095 57.895 0.00 0.00 43.93 3.91
599 609 1.626654 CGCTCACGACCGAATGCTTT 61.627 55.000 0.00 0.00 43.93 3.51
600 610 0.095417 GCTCACGACCGAATGCTTTC 59.905 55.000 2.28 2.28 0.00 2.62
649 659 3.818180 TGCAATGGAAACAAGGCAAATT 58.182 36.364 0.00 0.00 46.26 1.82
663 692 9.777297 AACAAGGCAAATTATCAAAGTACAAAT 57.223 25.926 0.00 0.00 0.00 2.32
667 696 9.139174 AGGCAAATTATCAAAGTACAAATTTCG 57.861 29.630 0.00 0.00 29.66 3.46
676 705 8.167605 TCAAAGTACAAATTTCGATTTACCCA 57.832 30.769 0.00 0.00 0.00 4.51
736 765 0.798776 CCCGCACAAGACACAGATTC 59.201 55.000 0.00 0.00 0.00 2.52
737 766 0.798776 CCGCACAAGACACAGATTCC 59.201 55.000 0.00 0.00 0.00 3.01
738 767 0.439985 CGCACAAGACACAGATTCCG 59.560 55.000 0.00 0.00 0.00 4.30
739 768 1.795768 GCACAAGACACAGATTCCGA 58.204 50.000 0.00 0.00 0.00 4.55
740 769 1.728971 GCACAAGACACAGATTCCGAG 59.271 52.381 0.00 0.00 0.00 4.63
741 770 1.728971 CACAAGACACAGATTCCGAGC 59.271 52.381 0.00 0.00 0.00 5.03
742 771 1.344438 ACAAGACACAGATTCCGAGCA 59.656 47.619 0.00 0.00 0.00 4.26
743 772 1.728971 CAAGACACAGATTCCGAGCAC 59.271 52.381 0.00 0.00 0.00 4.40
744 773 0.969149 AGACACAGATTCCGAGCACA 59.031 50.000 0.00 0.00 0.00 4.57
745 774 1.344438 AGACACAGATTCCGAGCACAA 59.656 47.619 0.00 0.00 0.00 3.33
746 775 2.143122 GACACAGATTCCGAGCACAAA 58.857 47.619 0.00 0.00 0.00 2.83
747 776 1.873591 ACACAGATTCCGAGCACAAAC 59.126 47.619 0.00 0.00 0.00 2.93
748 777 1.872952 CACAGATTCCGAGCACAAACA 59.127 47.619 0.00 0.00 0.00 2.83
749 778 2.096069 CACAGATTCCGAGCACAAACAG 60.096 50.000 0.00 0.00 0.00 3.16
750 779 2.146342 CAGATTCCGAGCACAAACAGT 58.854 47.619 0.00 0.00 0.00 3.55
751 780 2.158449 CAGATTCCGAGCACAAACAGTC 59.842 50.000 0.00 0.00 0.00 3.51
752 781 2.037772 AGATTCCGAGCACAAACAGTCT 59.962 45.455 0.00 0.00 0.00 3.24
753 782 2.325583 TTCCGAGCACAAACAGTCTT 57.674 45.000 0.00 0.00 0.00 3.01
754 783 2.325583 TCCGAGCACAAACAGTCTTT 57.674 45.000 0.00 0.00 0.00 2.52
839 895 1.891919 GACAACTGGCCAACTGCGA 60.892 57.895 7.01 0.00 42.61 5.10
1011 1083 4.424711 GCCCCAATGTCGAGGCCA 62.425 66.667 5.01 0.00 39.60 5.36
1569 1641 2.108514 CACCGTGCAATCCATCGCT 61.109 57.895 0.00 0.00 0.00 4.93
1780 1852 3.521560 TGTGAAGTTATCTGCGGATGTC 58.478 45.455 18.65 10.48 33.71 3.06
1795 1867 3.879295 CGGATGTCATTTCACCAATAGCT 59.121 43.478 0.00 0.00 0.00 3.32
1833 1905 5.239744 TGCTTCTCCGTTTTATACTTGCAAA 59.760 36.000 0.00 0.00 0.00 3.68
1834 1906 5.567915 GCTTCTCCGTTTTATACTTGCAAAC 59.432 40.000 0.00 0.00 0.00 2.93
2023 2144 2.846827 CCCAGACCCAAAAGGATAGAGT 59.153 50.000 0.00 0.00 39.89 3.24
2119 2240 0.179004 AGTTGGCGGTTGGATGACAA 60.179 50.000 0.00 0.00 36.54 3.18
2124 2245 1.378531 GCGGTTGGATGACAATGCTA 58.621 50.000 0.00 0.00 41.95 3.49
2132 2253 6.294176 GGTTGGATGACAATGCTATGGTTATC 60.294 42.308 0.00 0.00 41.95 1.75
2201 2322 5.049167 TCAAATGCTCATTTTGGTGTTCAC 58.951 37.500 5.19 0.00 38.84 3.18
2222 2343 3.244353 ACCTATGTGGAGCTGTATGCATC 60.244 47.826 0.19 0.00 41.15 3.91
2250 2371 4.039245 TCCTCGCCTATTTCACTCATAAGG 59.961 45.833 0.00 0.00 0.00 2.69
2300 2423 4.813697 GTCATCTTCCAGCTCCTATGTTTC 59.186 45.833 0.00 0.00 0.00 2.78
2301 2424 3.914426 TCTTCCAGCTCCTATGTTTCC 57.086 47.619 0.00 0.00 0.00 3.13
2302 2425 2.505819 TCTTCCAGCTCCTATGTTTCCC 59.494 50.000 0.00 0.00 0.00 3.97
2303 2426 1.965414 TCCAGCTCCTATGTTTCCCA 58.035 50.000 0.00 0.00 0.00 4.37
2304 2427 1.559682 TCCAGCTCCTATGTTTCCCAC 59.440 52.381 0.00 0.00 0.00 4.61
2305 2428 1.281867 CCAGCTCCTATGTTTCCCACA 59.718 52.381 0.00 0.00 40.71 4.17
2306 2429 2.290896 CCAGCTCCTATGTTTCCCACAA 60.291 50.000 0.00 0.00 39.50 3.33
2307 2430 2.749621 CAGCTCCTATGTTTCCCACAAC 59.250 50.000 0.00 0.00 39.50 3.32
2308 2431 2.644798 AGCTCCTATGTTTCCCACAACT 59.355 45.455 0.00 0.00 39.50 3.16
2309 2432 2.749621 GCTCCTATGTTTCCCACAACTG 59.250 50.000 0.00 0.00 39.50 3.16
2310 2433 3.559171 GCTCCTATGTTTCCCACAACTGA 60.559 47.826 0.00 0.00 39.50 3.41
2311 2434 4.848357 CTCCTATGTTTCCCACAACTGAT 58.152 43.478 0.00 0.00 39.50 2.90
2312 2435 4.843728 TCCTATGTTTCCCACAACTGATC 58.156 43.478 0.00 0.00 39.50 2.92
2313 2436 4.288366 TCCTATGTTTCCCACAACTGATCA 59.712 41.667 0.00 0.00 39.50 2.92
2314 2437 5.009631 CCTATGTTTCCCACAACTGATCAA 58.990 41.667 0.00 0.00 39.50 2.57
2315 2438 5.476599 CCTATGTTTCCCACAACTGATCAAA 59.523 40.000 0.00 0.00 39.50 2.69
2316 2439 6.153340 CCTATGTTTCCCACAACTGATCAAAT 59.847 38.462 0.00 0.00 39.50 2.32
2317 2440 5.452078 TGTTTCCCACAACTGATCAAATC 57.548 39.130 0.00 0.00 29.87 2.17
2318 2441 4.892345 TGTTTCCCACAACTGATCAAATCA 59.108 37.500 0.00 0.00 32.95 2.57
2333 2456 8.868522 TGATCAAATCAGGTCAATCTTAAGTT 57.131 30.769 1.63 0.00 33.59 2.66
2334 2457 8.733458 TGATCAAATCAGGTCAATCTTAAGTTG 58.267 33.333 1.63 6.87 33.59 3.16
2335 2458 8.641498 ATCAAATCAGGTCAATCTTAAGTTGT 57.359 30.769 1.63 0.00 0.00 3.32
2336 2459 9.739276 ATCAAATCAGGTCAATCTTAAGTTGTA 57.261 29.630 1.63 0.00 0.00 2.41
2337 2460 9.739276 TCAAATCAGGTCAATCTTAAGTTGTAT 57.261 29.630 1.63 0.00 0.00 2.29
2338 2461 9.778993 CAAATCAGGTCAATCTTAAGTTGTATG 57.221 33.333 1.63 7.48 0.00 2.39
2339 2462 6.985188 TCAGGTCAATCTTAAGTTGTATGC 57.015 37.500 1.63 0.00 0.00 3.14
2340 2463 5.880332 TCAGGTCAATCTTAAGTTGTATGCC 59.120 40.000 1.63 8.15 0.00 4.40
2341 2464 5.882557 CAGGTCAATCTTAAGTTGTATGCCT 59.117 40.000 1.63 9.76 0.00 4.75
2342 2465 6.375455 CAGGTCAATCTTAAGTTGTATGCCTT 59.625 38.462 1.63 0.00 0.00 4.35
2343 2466 6.599638 AGGTCAATCTTAAGTTGTATGCCTTC 59.400 38.462 1.63 0.00 0.00 3.46
2344 2467 6.183360 GGTCAATCTTAAGTTGTATGCCTTCC 60.183 42.308 1.63 0.00 0.00 3.46
2345 2468 6.599638 GTCAATCTTAAGTTGTATGCCTTCCT 59.400 38.462 1.63 0.00 0.00 3.36
2346 2469 6.599244 TCAATCTTAAGTTGTATGCCTTCCTG 59.401 38.462 1.63 0.00 0.00 3.86
2347 2470 4.261801 TCTTAAGTTGTATGCCTTCCTGC 58.738 43.478 1.63 0.00 0.00 4.85
2348 2471 1.839424 AAGTTGTATGCCTTCCTGCC 58.161 50.000 0.00 0.00 0.00 4.85
2349 2472 0.698238 AGTTGTATGCCTTCCTGCCA 59.302 50.000 0.00 0.00 0.00 4.92
2350 2473 0.811281 GTTGTATGCCTTCCTGCCAC 59.189 55.000 0.00 0.00 0.00 5.01
2351 2474 0.403655 TTGTATGCCTTCCTGCCACA 59.596 50.000 0.00 0.00 0.00 4.17
2352 2475 0.035152 TGTATGCCTTCCTGCCACAG 60.035 55.000 0.00 0.00 0.00 3.66
2353 2476 1.077501 TATGCCTTCCTGCCACAGC 60.078 57.895 0.00 0.00 40.48 4.40
2573 2696 3.053619 GTGGTCCAGGATTGGGATAAAGT 60.054 47.826 0.00 0.00 45.10 2.66
2631 2765 3.738982 TCTGTGTTTGGTGAGGTACATG 58.261 45.455 0.00 0.00 0.00 3.21
2632 2766 3.135712 TCTGTGTTTGGTGAGGTACATGT 59.864 43.478 2.69 2.69 0.00 3.21
2633 2767 3.210227 TGTGTTTGGTGAGGTACATGTG 58.790 45.455 9.11 0.00 0.00 3.21
2634 2768 2.552315 GTGTTTGGTGAGGTACATGTGG 59.448 50.000 9.11 0.00 0.00 4.17
2635 2769 1.539827 GTTTGGTGAGGTACATGTGGC 59.460 52.381 9.11 0.81 0.00 5.01
2636 2770 0.037590 TTGGTGAGGTACATGTGGCC 59.962 55.000 9.11 10.79 0.00 5.36
2637 2771 1.130678 TGGTGAGGTACATGTGGCCA 61.131 55.000 19.20 0.00 0.00 5.36
2638 2772 0.255890 GGTGAGGTACATGTGGCCAT 59.744 55.000 9.72 0.00 0.00 4.40
2639 2773 1.488812 GGTGAGGTACATGTGGCCATA 59.511 52.381 9.72 6.71 0.00 2.74
2640 2774 2.106511 GGTGAGGTACATGTGGCCATAT 59.893 50.000 9.72 9.63 0.00 1.78
2886 3026 1.983119 TATGAAGGGGAGCCTTGGCG 61.983 60.000 5.95 0.00 0.00 5.69
2986 3126 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
3348 3495 5.733647 AGTAATCTCCATTTTCTCTTCCCCT 59.266 40.000 0.00 0.00 0.00 4.79
3829 4008 7.451731 TGTAGGAATTTCATAGGACAGGATT 57.548 36.000 0.00 0.00 0.00 3.01
3830 4009 7.872138 TGTAGGAATTTCATAGGACAGGATTT 58.128 34.615 0.00 0.00 0.00 2.17
3831 4010 7.993183 TGTAGGAATTTCATAGGACAGGATTTC 59.007 37.037 0.00 0.00 0.00 2.17
3832 4011 7.218314 AGGAATTTCATAGGACAGGATTTCT 57.782 36.000 0.00 0.00 0.00 2.52
3833 4012 8.337118 AGGAATTTCATAGGACAGGATTTCTA 57.663 34.615 0.00 0.00 0.00 2.10
3834 4013 8.953665 AGGAATTTCATAGGACAGGATTTCTAT 58.046 33.333 0.00 0.00 0.00 1.98
4037 4216 7.696981 AGATACATGGCATCTCATTTCCTATT 58.303 34.615 0.00 0.00 0.00 1.73
4038 4217 7.610692 AGATACATGGCATCTCATTTCCTATTG 59.389 37.037 0.00 0.00 0.00 1.90
4197 4379 5.288804 ACAATGGAAAATCAGGTGAAAACG 58.711 37.500 0.00 0.00 0.00 3.60
4215 4397 1.157870 CGACTGCCAGGTTTCAACGT 61.158 55.000 0.00 0.00 0.00 3.99
4216 4398 1.870580 CGACTGCCAGGTTTCAACGTA 60.871 52.381 0.00 0.00 0.00 3.57
4217 4399 1.529865 GACTGCCAGGTTTCAACGTAC 59.470 52.381 0.00 0.00 0.00 3.67
4314 4496 8.526147 CAACCTCATTTCCAAGATACAAGAAAT 58.474 33.333 0.00 0.00 39.01 2.17
4322 4504 8.523915 TTCCAAGATACAAGAAATGCATATGT 57.476 30.769 0.00 6.12 0.00 2.29
4335 4517 9.784531 AGAAATGCATATGTTTAGTACTGCTAT 57.215 29.630 5.39 0.00 0.00 2.97
4540 4724 1.533033 TTCGTCTGACCCTGGAGCA 60.533 57.895 1.55 0.00 0.00 4.26
4576 4760 3.855853 GGAAGCCTCTCGCCCTCC 61.856 72.222 0.00 0.00 38.78 4.30
4715 4899 2.264794 GTGGAACCTCGGCGACAT 59.735 61.111 4.99 0.00 0.00 3.06
4723 4907 1.644786 CCTCGGCGACATGGTTTTCC 61.645 60.000 4.99 0.00 41.14 3.13
4755 4940 2.511659 TGCTCACCGTGTCTAACTACT 58.488 47.619 0.00 0.00 0.00 2.57
4757 4942 3.057736 TGCTCACCGTGTCTAACTACTTC 60.058 47.826 0.00 0.00 0.00 3.01
4811 4997 2.223135 GGCTTGCTTCTCTACGAATTGC 60.223 50.000 0.00 0.00 0.00 3.56
4854 5045 5.046087 TGTGGTTCATCAGATCTCAGTCAAT 60.046 40.000 0.00 0.00 0.00 2.57
4855 5046 5.293814 GTGGTTCATCAGATCTCAGTCAATG 59.706 44.000 0.00 0.00 0.00 2.82
4867 5058 6.471233 TCTCAGTCAATGTATCTAGGTTGG 57.529 41.667 0.00 0.00 0.00 3.77
4890 5089 5.816258 GGTACAATTTTTCCCGAAACCAAAA 59.184 36.000 0.00 0.00 0.00 2.44
4891 5090 6.018588 GGTACAATTTTTCCCGAAACCAAAAG 60.019 38.462 0.00 0.00 0.00 2.27
4902 5101 5.233988 CCGAAACCAAAAGCATTAAATGGA 58.766 37.500 0.00 0.00 32.64 3.41
4956 5155 8.818141 TTTTTGAAACCAAACGCATTATATGA 57.182 26.923 0.00 0.00 33.67 2.15
4987 5186 2.829741 AGAAGACAAGTCTGGTGAGC 57.170 50.000 3.08 0.00 40.36 4.26
4988 5187 2.042464 AGAAGACAAGTCTGGTGAGCA 58.958 47.619 3.08 0.00 40.36 4.26
4989 5188 2.036992 AGAAGACAAGTCTGGTGAGCAG 59.963 50.000 5.07 5.07 40.36 4.24
4990 5189 0.034616 AGACAAGTCTGGTGAGCAGC 59.965 55.000 6.80 2.42 38.75 5.25
4991 5190 0.250038 GACAAGTCTGGTGAGCAGCA 60.250 55.000 6.80 2.16 37.27 4.41
4997 5196 4.648626 TGGTGAGCAGCAGGGCAC 62.649 66.667 0.00 0.00 34.41 5.01
4998 5197 4.341783 GGTGAGCAGCAGGGCACT 62.342 66.667 0.00 0.00 35.83 4.40
5000 5199 3.563224 TGAGCAGCAGGGCACTGT 61.563 61.111 19.18 0.97 46.62 3.55
5001 5200 2.216331 TGAGCAGCAGGGCACTGTA 61.216 57.895 19.18 0.00 46.62 2.74
5002 5201 1.449246 GAGCAGCAGGGCACTGTAG 60.449 63.158 19.18 11.61 46.62 2.74
5003 5202 2.177594 GAGCAGCAGGGCACTGTAGT 62.178 60.000 19.18 0.00 46.62 2.73
5004 5203 2.037136 GCAGCAGGGCACTGTAGTG 61.037 63.158 19.18 13.76 46.62 2.74
5018 5217 5.489792 ACTGTAGTGATTCTGTCCATTGT 57.510 39.130 0.00 0.00 0.00 2.71
5019 5218 6.605471 ACTGTAGTGATTCTGTCCATTGTA 57.395 37.500 0.00 0.00 0.00 2.41
5020 5219 6.634805 ACTGTAGTGATTCTGTCCATTGTAG 58.365 40.000 0.00 0.00 0.00 2.74
5021 5220 5.419542 TGTAGTGATTCTGTCCATTGTAGC 58.580 41.667 0.00 0.00 0.00 3.58
5022 5221 3.525537 AGTGATTCTGTCCATTGTAGCG 58.474 45.455 0.00 0.00 0.00 4.26
5023 5222 3.195610 AGTGATTCTGTCCATTGTAGCGA 59.804 43.478 0.00 0.00 0.00 4.93
5024 5223 3.932710 GTGATTCTGTCCATTGTAGCGAA 59.067 43.478 0.00 0.00 0.00 4.70
5025 5224 3.932710 TGATTCTGTCCATTGTAGCGAAC 59.067 43.478 0.00 0.00 0.00 3.95
5026 5225 3.678056 TTCTGTCCATTGTAGCGAACT 57.322 42.857 0.00 0.00 0.00 3.01
5027 5226 2.959516 TCTGTCCATTGTAGCGAACTG 58.040 47.619 0.00 0.00 0.00 3.16
5028 5227 2.002586 CTGTCCATTGTAGCGAACTGG 58.997 52.381 0.00 0.00 0.00 4.00
5029 5228 1.621317 TGTCCATTGTAGCGAACTGGA 59.379 47.619 0.00 0.00 33.70 3.86
5030 5229 2.000447 GTCCATTGTAGCGAACTGGAC 59.000 52.381 13.89 13.89 46.38 4.02
5031 5230 1.066430 TCCATTGTAGCGAACTGGACC 60.066 52.381 0.00 0.00 31.19 4.46
5032 5231 1.369625 CATTGTAGCGAACTGGACCC 58.630 55.000 0.00 0.00 0.00 4.46
5033 5232 1.066143 CATTGTAGCGAACTGGACCCT 60.066 52.381 0.00 0.00 0.00 4.34
5034 5233 0.320374 TTGTAGCGAACTGGACCCTG 59.680 55.000 0.00 0.00 0.00 4.45
5035 5234 0.830444 TGTAGCGAACTGGACCCTGT 60.830 55.000 0.00 0.00 0.00 4.00
5036 5235 1.180029 GTAGCGAACTGGACCCTGTA 58.820 55.000 0.00 0.00 0.00 2.74
5037 5236 1.134560 GTAGCGAACTGGACCCTGTAG 59.865 57.143 0.00 0.00 0.00 2.74
5038 5237 1.448013 GCGAACTGGACCCTGTAGC 60.448 63.158 0.00 5.19 0.00 3.58
5039 5238 1.153823 CGAACTGGACCCTGTAGCG 60.154 63.158 0.00 3.62 0.00 4.26
5040 5239 1.592400 CGAACTGGACCCTGTAGCGA 61.592 60.000 12.45 0.00 32.25 4.93
5041 5240 0.173708 GAACTGGACCCTGTAGCGAG 59.826 60.000 0.00 0.00 0.00 5.03
5042 5241 1.889530 AACTGGACCCTGTAGCGAGC 61.890 60.000 0.00 0.00 0.00 5.03
5043 5242 2.037367 TGGACCCTGTAGCGAGCT 59.963 61.111 2.25 2.25 0.00 4.09
5044 5243 2.290122 CTGGACCCTGTAGCGAGCTG 62.290 65.000 7.99 0.00 0.00 4.24
5045 5244 2.496817 GACCCTGTAGCGAGCTGG 59.503 66.667 7.99 2.76 0.00 4.85
5046 5245 2.283966 ACCCTGTAGCGAGCTGGT 60.284 61.111 7.99 3.43 0.00 4.00
5047 5246 1.889530 GACCCTGTAGCGAGCTGGTT 61.890 60.000 7.99 0.00 0.00 3.67
5048 5247 1.153549 CCCTGTAGCGAGCTGGTTC 60.154 63.158 7.99 0.00 0.00 3.62
5049 5248 1.591703 CCTGTAGCGAGCTGGTTCA 59.408 57.895 7.99 1.66 0.00 3.18
5050 5249 0.737715 CCTGTAGCGAGCTGGTTCAC 60.738 60.000 7.99 0.00 0.00 3.18
5051 5250 0.244994 CTGTAGCGAGCTGGTTCACT 59.755 55.000 7.99 0.00 0.00 3.41
5052 5251 1.472878 CTGTAGCGAGCTGGTTCACTA 59.527 52.381 7.99 0.00 0.00 2.74
5053 5252 1.201647 TGTAGCGAGCTGGTTCACTAC 59.798 52.381 7.99 0.00 34.72 2.73
5054 5253 0.450583 TAGCGAGCTGGTTCACTACG 59.549 55.000 7.99 0.00 0.00 3.51
5055 5254 1.805945 GCGAGCTGGTTCACTACGG 60.806 63.158 0.00 0.00 0.00 4.02
5056 5255 1.585006 CGAGCTGGTTCACTACGGT 59.415 57.895 0.00 0.00 0.00 4.83
5057 5256 0.732880 CGAGCTGGTTCACTACGGTG 60.733 60.000 0.00 0.00 44.23 4.94
5071 5270 7.972832 TCACTACGGTGATTTTTCTTGTTAT 57.027 32.000 0.00 0.00 46.19 1.89
5072 5271 8.385898 TCACTACGGTGATTTTTCTTGTTATT 57.614 30.769 0.00 0.00 46.19 1.40
5073 5272 9.491675 TCACTACGGTGATTTTTCTTGTTATTA 57.508 29.630 0.00 0.00 46.19 0.98
5112 5311 9.814899 TGAATATTTAATGGAAATGCGATTTGT 57.185 25.926 0.00 0.00 38.27 2.83
5123 5322 9.657121 TGGAAATGCGATTTGTTTTTAAATTTC 57.343 25.926 0.00 0.00 30.78 2.17
5124 5323 9.877137 GGAAATGCGATTTGTTTTTAAATTTCT 57.123 25.926 0.00 0.00 30.78 2.52
5126 5325 9.662545 AAATGCGATTTGTTTTTAAATTTCTGG 57.337 25.926 0.00 0.00 30.78 3.86
5127 5326 8.600449 ATGCGATTTGTTTTTAAATTTCTGGA 57.400 26.923 0.00 0.00 30.78 3.86
5128 5327 8.425577 TGCGATTTGTTTTTAAATTTCTGGAA 57.574 26.923 0.00 0.00 30.78 3.53
5129 5328 8.883731 TGCGATTTGTTTTTAAATTTCTGGAAA 58.116 25.926 0.00 0.00 30.78 3.13
5130 5329 9.709600 GCGATTTGTTTTTAAATTTCTGGAAAA 57.290 25.926 0.00 0.00 33.56 2.29
5164 5363 8.756376 TTGATAACTTTCTAAAAACGTGAACG 57.244 30.769 0.40 0.40 46.33 3.95
5253 5452 9.657419 AAACTGTGAACAATTTCTTGAAAATCT 57.343 25.926 0.00 0.00 36.20 2.40
5254 5453 8.638685 ACTGTGAACAATTTCTTGAAAATCTG 57.361 30.769 0.00 1.91 36.20 2.90
5255 5454 8.469200 ACTGTGAACAATTTCTTGAAAATCTGA 58.531 29.630 0.00 0.00 36.20 3.27
5256 5455 9.304731 CTGTGAACAATTTCTTGAAAATCTGAA 57.695 29.630 0.00 0.00 36.20 3.02
5257 5456 9.650539 TGTGAACAATTTCTTGAAAATCTGAAA 57.349 25.926 0.00 0.00 36.20 2.69
5324 5523 6.588348 ATCACAACTTTTTAAAAGCACTGC 57.412 33.333 16.35 0.00 0.00 4.40
5325 5524 4.560819 TCACAACTTTTTAAAAGCACTGCG 59.439 37.500 16.35 6.84 0.00 5.18
5326 5525 4.560819 CACAACTTTTTAAAAGCACTGCGA 59.439 37.500 16.35 0.00 0.00 5.10
5327 5526 5.061560 CACAACTTTTTAAAAGCACTGCGAA 59.938 36.000 16.35 0.00 0.00 4.70
5328 5527 5.635700 ACAACTTTTTAAAAGCACTGCGAAA 59.364 32.000 16.35 0.00 0.00 3.46
5329 5528 6.146347 ACAACTTTTTAAAAGCACTGCGAAAA 59.854 30.769 16.35 0.00 0.00 2.29
5330 5529 6.902224 ACTTTTTAAAAGCACTGCGAAAAT 57.098 29.167 16.35 0.00 0.00 1.82
5331 5530 7.302350 ACTTTTTAAAAGCACTGCGAAAATT 57.698 28.000 16.35 0.00 0.00 1.82
5332 5531 7.747888 ACTTTTTAAAAGCACTGCGAAAATTT 58.252 26.923 16.35 0.00 0.00 1.82
5333 5532 8.874816 ACTTTTTAAAAGCACTGCGAAAATTTA 58.125 25.926 16.35 0.00 0.00 1.40
5334 5533 9.862585 CTTTTTAAAAGCACTGCGAAAATTTAT 57.137 25.926 4.42 0.00 0.00 1.40
5336 5535 9.643652 TTTTAAAAGCACTGCGAAAATTTATTG 57.356 25.926 0.00 0.00 0.00 1.90
5337 5536 8.581057 TTAAAAGCACTGCGAAAATTTATTGA 57.419 26.923 0.00 0.00 0.00 2.57
5338 5537 7.475771 AAAAGCACTGCGAAAATTTATTGAA 57.524 28.000 0.00 0.00 0.00 2.69
5339 5538 7.475771 AAAGCACTGCGAAAATTTATTGAAA 57.524 28.000 0.00 0.00 0.00 2.69
5340 5539 7.475771 AAGCACTGCGAAAATTTATTGAAAA 57.524 28.000 0.00 0.00 0.00 2.29
5341 5540 7.656707 AGCACTGCGAAAATTTATTGAAAAT 57.343 28.000 0.00 0.00 0.00 1.82
5342 5541 7.512297 AGCACTGCGAAAATTTATTGAAAATG 58.488 30.769 0.00 0.00 0.00 2.32
5343 5542 7.384660 AGCACTGCGAAAATTTATTGAAAATGA 59.615 29.630 0.00 0.00 0.00 2.57
5344 5543 7.685304 GCACTGCGAAAATTTATTGAAAATGAG 59.315 33.333 0.00 0.00 0.00 2.90
5345 5544 8.164153 CACTGCGAAAATTTATTGAAAATGAGG 58.836 33.333 0.00 0.00 0.00 3.86
5346 5545 8.087750 ACTGCGAAAATTTATTGAAAATGAGGA 58.912 29.630 0.00 0.00 0.00 3.71
5347 5546 8.238481 TGCGAAAATTTATTGAAAATGAGGAC 57.762 30.769 0.00 0.00 0.00 3.85
5348 5547 7.869937 TGCGAAAATTTATTGAAAATGAGGACA 59.130 29.630 0.00 0.00 0.00 4.02
5349 5548 8.162245 GCGAAAATTTATTGAAAATGAGGACAC 58.838 33.333 0.00 0.00 0.00 3.67
5350 5549 9.410556 CGAAAATTTATTGAAAATGAGGACACT 57.589 29.630 0.00 0.00 0.00 3.55
5438 5637 4.837896 AAAAAGAGAAAGAGCCGGAAAG 57.162 40.909 5.05 0.00 0.00 2.62
5439 5638 2.481289 AAGAGAAAGAGCCGGAAAGG 57.519 50.000 5.05 0.00 44.97 3.11
5440 5639 1.645710 AGAGAAAGAGCCGGAAAGGA 58.354 50.000 5.05 0.00 45.00 3.36
5441 5640 1.978580 AGAGAAAGAGCCGGAAAGGAA 59.021 47.619 5.05 0.00 45.00 3.36
5442 5641 2.372172 AGAGAAAGAGCCGGAAAGGAAA 59.628 45.455 5.05 0.00 45.00 3.13
5443 5642 3.009584 AGAGAAAGAGCCGGAAAGGAAAT 59.990 43.478 5.05 0.00 45.00 2.17
5444 5643 3.348119 AGAAAGAGCCGGAAAGGAAATC 58.652 45.455 5.05 0.00 45.00 2.17
5445 5644 2.879103 AAGAGCCGGAAAGGAAATCA 57.121 45.000 5.05 0.00 45.00 2.57
5446 5645 2.409948 AGAGCCGGAAAGGAAATCAG 57.590 50.000 5.05 0.00 45.00 2.90
5447 5646 1.909302 AGAGCCGGAAAGGAAATCAGA 59.091 47.619 5.05 0.00 45.00 3.27
5448 5647 2.305927 AGAGCCGGAAAGGAAATCAGAA 59.694 45.455 5.05 0.00 45.00 3.02
5449 5648 3.081804 GAGCCGGAAAGGAAATCAGAAA 58.918 45.455 5.05 0.00 45.00 2.52
5450 5649 3.496331 AGCCGGAAAGGAAATCAGAAAA 58.504 40.909 5.05 0.00 45.00 2.29
5451 5650 3.255888 AGCCGGAAAGGAAATCAGAAAAC 59.744 43.478 5.05 0.00 45.00 2.43
5452 5651 3.614150 GCCGGAAAGGAAATCAGAAAACC 60.614 47.826 5.05 0.00 45.00 3.27
5453 5652 3.572255 CCGGAAAGGAAATCAGAAAACCA 59.428 43.478 0.00 0.00 45.00 3.67
5454 5653 4.546570 CGGAAAGGAAATCAGAAAACCAC 58.453 43.478 0.00 0.00 0.00 4.16
5455 5654 4.278419 CGGAAAGGAAATCAGAAAACCACT 59.722 41.667 0.00 0.00 0.00 4.00
5456 5655 5.472137 CGGAAAGGAAATCAGAAAACCACTA 59.528 40.000 0.00 0.00 0.00 2.74
5457 5656 6.016610 CGGAAAGGAAATCAGAAAACCACTAA 60.017 38.462 0.00 0.00 0.00 2.24
5458 5657 7.469456 CGGAAAGGAAATCAGAAAACCACTAAA 60.469 37.037 0.00 0.00 0.00 1.85
5459 5658 8.201464 GGAAAGGAAATCAGAAAACCACTAAAA 58.799 33.333 0.00 0.00 0.00 1.52
5460 5659 9.594478 GAAAGGAAATCAGAAAACCACTAAAAA 57.406 29.630 0.00 0.00 0.00 1.94
5461 5660 8.942338 AAGGAAATCAGAAAACCACTAAAAAC 57.058 30.769 0.00 0.00 0.00 2.43
5462 5661 8.073467 AGGAAATCAGAAAACCACTAAAAACA 57.927 30.769 0.00 0.00 0.00 2.83
5463 5662 8.536175 AGGAAATCAGAAAACCACTAAAAACAA 58.464 29.630 0.00 0.00 0.00 2.83
5464 5663 8.600625 GGAAATCAGAAAACCACTAAAAACAAC 58.399 33.333 0.00 0.00 0.00 3.32
5465 5664 9.145865 GAAATCAGAAAACCACTAAAAACAACA 57.854 29.630 0.00 0.00 0.00 3.33
5466 5665 9.495572 AAATCAGAAAACCACTAAAAACAACAA 57.504 25.926 0.00 0.00 0.00 2.83
5467 5666 9.495572 AATCAGAAAACCACTAAAAACAACAAA 57.504 25.926 0.00 0.00 0.00 2.83
5468 5667 8.888579 TCAGAAAACCACTAAAAACAACAAAA 57.111 26.923 0.00 0.00 0.00 2.44
5469 5668 9.326413 TCAGAAAACCACTAAAAACAACAAAAA 57.674 25.926 0.00 0.00 0.00 1.94
5491 5690 5.582689 AAATGAAAATCGATCCAGGAACC 57.417 39.130 0.00 0.00 0.00 3.62
5492 5691 4.510167 ATGAAAATCGATCCAGGAACCT 57.490 40.909 0.00 0.00 0.00 3.50
5493 5692 4.301072 TGAAAATCGATCCAGGAACCTT 57.699 40.909 0.00 0.00 0.00 3.50
5494 5693 4.261801 TGAAAATCGATCCAGGAACCTTC 58.738 43.478 0.00 0.00 0.00 3.46
5495 5694 4.019321 TGAAAATCGATCCAGGAACCTTCT 60.019 41.667 0.00 0.00 0.00 2.85
5496 5695 5.188948 TGAAAATCGATCCAGGAACCTTCTA 59.811 40.000 0.00 0.00 0.00 2.10
5497 5696 4.946478 AATCGATCCAGGAACCTTCTAG 57.054 45.455 0.00 0.00 0.00 2.43
5498 5697 3.664551 TCGATCCAGGAACCTTCTAGA 57.335 47.619 0.00 0.00 0.00 2.43
5499 5698 3.977312 TCGATCCAGGAACCTTCTAGAA 58.023 45.455 4.81 4.81 0.00 2.10
5500 5699 3.954904 TCGATCCAGGAACCTTCTAGAAG 59.045 47.826 23.31 23.31 38.14 2.85
5513 5712 3.412237 TCTAGAAGGTTCCCAAAACCG 57.588 47.619 0.00 0.00 44.82 4.44
5514 5713 2.039348 TCTAGAAGGTTCCCAAAACCGG 59.961 50.000 0.00 0.00 44.82 5.28
5515 5714 0.554305 AGAAGGTTCCCAAAACCGGT 59.446 50.000 0.00 0.00 44.82 5.28
5516 5715 1.776063 AGAAGGTTCCCAAAACCGGTA 59.224 47.619 8.00 0.00 44.82 4.02
5517 5716 2.156917 GAAGGTTCCCAAAACCGGTAG 58.843 52.381 8.00 0.09 44.82 3.18
5518 5717 1.437397 AGGTTCCCAAAACCGGTAGA 58.563 50.000 8.00 0.00 44.82 2.59
5519 5718 1.776063 AGGTTCCCAAAACCGGTAGAA 59.224 47.619 8.00 3.55 44.82 2.10
5520 5719 2.175284 AGGTTCCCAAAACCGGTAGAAA 59.825 45.455 8.00 0.00 44.82 2.52
5521 5720 2.957680 GGTTCCCAAAACCGGTAGAAAA 59.042 45.455 8.00 0.00 0.00 2.29
5522 5721 3.243501 GGTTCCCAAAACCGGTAGAAAAC 60.244 47.826 8.00 8.18 0.00 2.43
5523 5722 2.585330 TCCCAAAACCGGTAGAAAACC 58.415 47.619 8.00 0.00 45.77 3.27
5538 5737 7.948278 GTAGAAAACCATACACTAGGCTATG 57.052 40.000 0.00 0.00 0.00 2.23
5539 5738 5.368989 AGAAAACCATACACTAGGCTATGC 58.631 41.667 0.00 0.00 0.00 3.14
5540 5739 5.131142 AGAAAACCATACACTAGGCTATGCT 59.869 40.000 0.00 0.00 0.00 3.79
5541 5740 6.326583 AGAAAACCATACACTAGGCTATGCTA 59.673 38.462 0.00 0.00 0.00 3.49
5542 5741 6.494666 AAACCATACACTAGGCTATGCTAA 57.505 37.500 0.00 0.00 0.00 3.09
5543 5742 6.494666 AACCATACACTAGGCTATGCTAAA 57.505 37.500 0.00 0.00 0.00 1.85
5544 5743 6.688073 ACCATACACTAGGCTATGCTAAAT 57.312 37.500 0.00 0.00 0.00 1.40
5545 5744 7.792364 ACCATACACTAGGCTATGCTAAATA 57.208 36.000 0.00 0.00 0.00 1.40
5546 5745 7.841956 ACCATACACTAGGCTATGCTAAATAG 58.158 38.462 0.00 0.00 0.00 1.73
5547 5746 7.093289 ACCATACACTAGGCTATGCTAAATAGG 60.093 40.741 0.00 0.00 0.00 2.57
5548 5747 5.153950 ACACTAGGCTATGCTAAATAGGC 57.846 43.478 10.11 10.11 44.55 3.93
5549 5748 4.020128 ACACTAGGCTATGCTAAATAGGCC 60.020 45.833 13.48 0.00 45.09 5.19
5550 5749 2.770164 AGGCTATGCTAAATAGGCCG 57.230 50.000 13.48 0.00 45.09 6.13
5551 5750 1.279271 AGGCTATGCTAAATAGGCCGG 59.721 52.381 13.48 0.00 45.09 6.13
5552 5751 1.087501 GCTATGCTAAATAGGCCGGC 58.912 55.000 21.18 21.18 0.00 6.13
5553 5752 1.739067 CTATGCTAAATAGGCCGGCC 58.261 55.000 39.29 39.29 0.00 6.13
5554 5753 0.326927 TATGCTAAATAGGCCGGCCC 59.673 55.000 41.72 24.52 36.58 5.80
5555 5754 1.715019 ATGCTAAATAGGCCGGCCCA 61.715 55.000 41.72 31.32 36.58 5.36
5556 5755 1.897137 GCTAAATAGGCCGGCCCAC 60.897 63.158 41.72 18.27 36.58 4.61
5557 5756 1.228154 CTAAATAGGCCGGCCCACC 60.228 63.158 41.72 17.85 36.58 4.61
5558 5757 1.990160 CTAAATAGGCCGGCCCACCA 61.990 60.000 41.72 24.54 36.58 4.17
5559 5758 1.572689 TAAATAGGCCGGCCCACCAA 61.573 55.000 41.72 22.24 36.58 3.67
5560 5759 2.854300 AAATAGGCCGGCCCACCAAG 62.854 60.000 41.72 0.00 36.58 3.61
5573 5772 1.513158 ACCAAGAGTGATCGCCTCG 59.487 57.895 1.76 0.00 34.08 4.63
5574 5773 1.880340 CCAAGAGTGATCGCCTCGC 60.880 63.158 1.76 0.00 34.08 5.03
5575 5774 1.880340 CAAGAGTGATCGCCTCGCC 60.880 63.158 1.76 0.00 34.78 5.54
5576 5775 2.055042 AAGAGTGATCGCCTCGCCT 61.055 57.895 1.76 0.00 34.78 5.52
5577 5776 0.752009 AAGAGTGATCGCCTCGCCTA 60.752 55.000 1.76 0.00 34.78 3.93
5578 5777 1.169661 AGAGTGATCGCCTCGCCTAG 61.170 60.000 1.76 0.00 34.78 3.02
5579 5778 2.355244 GTGATCGCCTCGCCTAGC 60.355 66.667 0.00 0.00 0.00 3.42
5580 5779 2.519541 TGATCGCCTCGCCTAGCT 60.520 61.111 0.00 0.00 0.00 3.32
5581 5780 2.049618 GATCGCCTCGCCTAGCTG 60.050 66.667 0.00 0.00 0.00 4.24
5582 5781 2.835431 ATCGCCTCGCCTAGCTGT 60.835 61.111 0.00 0.00 0.00 4.40
5583 5782 3.144120 ATCGCCTCGCCTAGCTGTG 62.144 63.158 0.00 0.00 0.00 3.66
5584 5783 4.135153 CGCCTCGCCTAGCTGTGT 62.135 66.667 0.00 0.00 0.00 3.72
5585 5784 2.510238 GCCTCGCCTAGCTGTGTG 60.510 66.667 0.00 0.00 0.00 3.82
5586 5785 2.973899 CCTCGCCTAGCTGTGTGT 59.026 61.111 0.00 0.00 0.00 3.72
5587 5786 1.293498 CCTCGCCTAGCTGTGTGTT 59.707 57.895 0.00 0.00 0.00 3.32
5588 5787 0.320771 CCTCGCCTAGCTGTGTGTTT 60.321 55.000 0.00 0.00 0.00 2.83
5589 5788 0.792640 CTCGCCTAGCTGTGTGTTTG 59.207 55.000 0.00 0.00 0.00 2.93
5590 5789 0.602638 TCGCCTAGCTGTGTGTTTGG 60.603 55.000 0.00 0.00 0.00 3.28
5591 5790 1.577328 CGCCTAGCTGTGTGTTTGGG 61.577 60.000 0.00 0.00 0.00 4.12
5592 5791 1.866853 GCCTAGCTGTGTGTTTGGGC 61.867 60.000 0.00 0.00 0.00 5.36
5593 5792 0.537143 CCTAGCTGTGTGTTTGGGCA 60.537 55.000 0.00 0.00 0.00 5.36
5594 5793 1.317613 CTAGCTGTGTGTTTGGGCAA 58.682 50.000 0.00 0.00 0.00 4.52
5595 5794 1.001378 CTAGCTGTGTGTTTGGGCAAC 60.001 52.381 0.00 0.00 35.71 4.17
5607 5806 3.357079 GGCAACCACTGGACGCAG 61.357 66.667 0.71 0.00 0.00 5.18
5623 5822 4.705337 ACGCAGTGGTGTTAAAAGAAAA 57.295 36.364 0.00 0.00 42.51 2.29
5624 5823 4.668289 ACGCAGTGGTGTTAAAAGAAAAG 58.332 39.130 0.00 0.00 42.51 2.27
5625 5824 4.396790 ACGCAGTGGTGTTAAAAGAAAAGA 59.603 37.500 0.00 0.00 42.51 2.52
5626 5825 5.106078 ACGCAGTGGTGTTAAAAGAAAAGAA 60.106 36.000 0.00 0.00 42.51 2.52
5627 5826 5.229260 CGCAGTGGTGTTAAAAGAAAAGAAC 59.771 40.000 0.00 0.00 0.00 3.01
5628 5827 6.330278 GCAGTGGTGTTAAAAGAAAAGAACT 58.670 36.000 0.00 0.00 0.00 3.01
5629 5828 6.253512 GCAGTGGTGTTAAAAGAAAAGAACTG 59.746 38.462 0.00 0.00 34.66 3.16
5630 5829 7.312899 CAGTGGTGTTAAAAGAAAAGAACTGT 58.687 34.615 0.00 0.00 0.00 3.55
5631 5830 7.812669 CAGTGGTGTTAAAAGAAAAGAACTGTT 59.187 33.333 0.00 0.00 0.00 3.16
5632 5831 7.812669 AGTGGTGTTAAAAGAAAAGAACTGTTG 59.187 33.333 0.00 0.00 0.00 3.33
5633 5832 7.597369 GTGGTGTTAAAAGAAAAGAACTGTTGT 59.403 33.333 0.00 0.00 0.00 3.32
5634 5833 8.794553 TGGTGTTAAAAGAAAAGAACTGTTGTA 58.205 29.630 0.00 0.00 0.00 2.41
5635 5834 9.069078 GGTGTTAAAAGAAAAGAACTGTTGTAC 57.931 33.333 0.00 0.00 0.00 2.90
5636 5835 9.615295 GTGTTAAAAGAAAAGAACTGTTGTACA 57.385 29.630 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.617018 CCCATCCTTGACTCGCCTCA 61.617 60.000 0.00 0.00 0.00 3.86
154 156 4.514577 CCATCGCCTCGCCTCGTT 62.515 66.667 0.00 0.00 0.00 3.85
258 265 0.545171 CTCCTCATCCATGCCACACT 59.455 55.000 0.00 0.00 0.00 3.55
477 487 2.180276 AGACTACCCAACGCAGAGATT 58.820 47.619 0.00 0.00 0.00 2.40
478 488 1.853963 AGACTACCCAACGCAGAGAT 58.146 50.000 0.00 0.00 0.00 2.75
509 519 0.670546 CTGTGCTCGTTTGGATCGGT 60.671 55.000 0.00 0.00 0.00 4.69
522 532 1.973281 CATTTGGTCCGCCTGTGCT 60.973 57.895 0.00 0.00 35.27 4.40
523 533 2.568090 CATTTGGTCCGCCTGTGC 59.432 61.111 0.00 0.00 35.27 4.57
566 576 2.791560 CGTGAGCGAACTGATTAGATGG 59.208 50.000 0.00 0.00 41.33 3.51
567 577 3.695816 TCGTGAGCGAACTGATTAGATG 58.304 45.455 0.00 0.00 44.92 2.90
581 591 0.095417 GAAAGCATTCGGTCGTGAGC 59.905 55.000 0.00 0.00 0.00 4.26
596 606 2.095110 TGCCACAATGATTCAGCGAAAG 60.095 45.455 0.00 0.00 0.00 2.62
597 607 1.885233 TGCCACAATGATTCAGCGAAA 59.115 42.857 0.00 0.00 0.00 3.46
598 608 1.532523 TGCCACAATGATTCAGCGAA 58.467 45.000 0.00 0.00 0.00 4.70
599 609 1.532523 TTGCCACAATGATTCAGCGA 58.467 45.000 0.00 0.00 0.00 4.93
600 610 2.350899 TTTGCCACAATGATTCAGCG 57.649 45.000 0.00 0.00 0.00 5.18
601 611 3.852286 TCATTTGCCACAATGATTCAGC 58.148 40.909 0.00 0.00 31.10 4.26
602 612 8.657074 ATTTATCATTTGCCACAATGATTCAG 57.343 30.769 16.68 0.00 41.82 3.02
603 613 8.884726 CAATTTATCATTTGCCACAATGATTCA 58.115 29.630 16.68 8.10 41.82 2.57
604 614 7.853929 GCAATTTATCATTTGCCACAATGATTC 59.146 33.333 16.68 2.78 41.82 2.52
605 615 7.337184 TGCAATTTATCATTTGCCACAATGATT 59.663 29.630 16.68 2.71 45.94 2.57
609 619 7.415765 CCATTGCAATTTATCATTTGCCACAAT 60.416 33.333 9.83 0.00 45.94 2.71
663 692 9.675464 ACTCTATTTATGTTGGGTAAATCGAAA 57.325 29.630 0.00 0.00 34.54 3.46
676 705 6.931838 TCTCGTGACCAACTCTATTTATGTT 58.068 36.000 0.00 0.00 0.00 2.71
736 765 2.032549 CAGAAAGACTGTTTGTGCTCGG 60.033 50.000 0.00 0.00 41.30 4.63
737 766 3.244670 CAGAAAGACTGTTTGTGCTCG 57.755 47.619 0.00 0.00 41.30 5.03
738 767 2.287248 GGCAGAAAGACTGTTTGTGCTC 60.287 50.000 17.11 6.99 44.80 4.26
739 768 1.678101 GGCAGAAAGACTGTTTGTGCT 59.322 47.619 17.11 0.00 44.80 4.40
740 769 8.984481 TTTTCTGGCAGAAAGACTGTTTGTGC 62.984 42.308 33.73 11.23 44.14 4.57
741 770 5.622007 TTTTCTGGCAGAAAGACTGTTTGTG 60.622 40.000 33.73 0.00 44.14 3.33
742 771 4.462483 TTTTCTGGCAGAAAGACTGTTTGT 59.538 37.500 33.73 0.00 44.14 2.83
743 772 4.800471 GTTTTCTGGCAGAAAGACTGTTTG 59.200 41.667 33.73 0.00 44.14 2.93
744 773 4.462483 TGTTTTCTGGCAGAAAGACTGTTT 59.538 37.500 33.73 0.00 44.14 2.83
745 774 4.016444 TGTTTTCTGGCAGAAAGACTGTT 58.984 39.130 33.73 0.00 44.14 3.16
746 775 3.620488 TGTTTTCTGGCAGAAAGACTGT 58.380 40.909 33.73 0.00 44.14 3.55
747 776 4.354587 GTTGTTTTCTGGCAGAAAGACTG 58.645 43.478 33.73 1.25 44.14 3.51
748 777 3.065371 CGTTGTTTTCTGGCAGAAAGACT 59.935 43.478 33.73 0.00 44.14 3.24
749 778 3.181500 ACGTTGTTTTCTGGCAGAAAGAC 60.181 43.478 33.73 30.76 44.14 3.01
750 779 3.013921 ACGTTGTTTTCTGGCAGAAAGA 58.986 40.909 33.73 24.51 44.14 2.52
751 780 3.363178 GACGTTGTTTTCTGGCAGAAAG 58.637 45.455 33.73 26.01 44.14 2.62
752 781 2.098443 GGACGTTGTTTTCTGGCAGAAA 59.902 45.455 32.85 32.85 42.00 2.52
753 782 1.673920 GGACGTTGTTTTCTGGCAGAA 59.326 47.619 25.38 25.38 31.28 3.02
754 783 1.305201 GGACGTTGTTTTCTGGCAGA 58.695 50.000 14.43 14.43 0.00 4.26
922 985 0.390998 AGCTCTCTCTCGGCTTTTGC 60.391 55.000 0.00 0.00 46.64 3.68
1692 1764 0.739462 TCAGTGGCAGCGTTAATCGG 60.739 55.000 0.00 0.00 40.26 4.18
1833 1905 6.068010 TCACAATGGTCTTTTTGTATCTGGT 58.932 36.000 0.00 0.00 34.42 4.00
1834 1906 6.573664 TCACAATGGTCTTTTTGTATCTGG 57.426 37.500 0.00 0.00 34.42 3.86
1981 2053 2.943033 GCTGCAACCTGGTAATAATCGT 59.057 45.455 0.00 0.00 0.00 3.73
2023 2144 2.531771 TCACGGTAGTTCCATTCCTCA 58.468 47.619 0.00 0.00 35.57 3.86
2084 2205 2.358582 CCAACTGTGCAAATGACTGTCA 59.641 45.455 13.60 13.60 0.00 3.58
2119 2240 4.532126 TCCGAATCTGGATAACCATAGCAT 59.468 41.667 0.00 0.00 45.87 3.79
2124 2245 6.040842 CCAAAATTCCGAATCTGGATAACCAT 59.959 38.462 13.54 0.00 45.87 3.55
2132 2253 3.874392 AAGCCAAAATTCCGAATCTGG 57.126 42.857 14.13 14.13 0.00 3.86
2201 2322 2.916702 TGCATACAGCTCCACATAGG 57.083 50.000 0.00 0.00 45.94 2.57
2222 2343 4.635765 TGAGTGAAATAGGCGAGGAAAATG 59.364 41.667 0.00 0.00 0.00 2.32
2308 2431 8.733458 CAACTTAAGATTGACCTGATTTGATCA 58.267 33.333 10.09 0.00 37.76 2.92
2309 2432 8.734386 ACAACTTAAGATTGACCTGATTTGATC 58.266 33.333 10.09 0.00 0.00 2.92
2310 2433 8.641498 ACAACTTAAGATTGACCTGATTTGAT 57.359 30.769 10.09 0.00 0.00 2.57
2311 2434 9.739276 ATACAACTTAAGATTGACCTGATTTGA 57.261 29.630 10.09 0.00 0.00 2.69
2312 2435 9.778993 CATACAACTTAAGATTGACCTGATTTG 57.221 33.333 10.09 1.20 0.00 2.32
2313 2436 8.462016 GCATACAACTTAAGATTGACCTGATTT 58.538 33.333 10.09 0.00 0.00 2.17
2314 2437 7.067494 GGCATACAACTTAAGATTGACCTGATT 59.933 37.037 10.09 0.00 0.00 2.57
2315 2438 6.543831 GGCATACAACTTAAGATTGACCTGAT 59.456 38.462 10.09 0.00 0.00 2.90
2316 2439 5.880332 GGCATACAACTTAAGATTGACCTGA 59.120 40.000 10.09 0.00 0.00 3.86
2317 2440 5.882557 AGGCATACAACTTAAGATTGACCTG 59.117 40.000 10.09 10.43 0.00 4.00
2318 2441 6.067217 AGGCATACAACTTAAGATTGACCT 57.933 37.500 10.09 12.51 0.00 3.85
2319 2442 6.183360 GGAAGGCATACAACTTAAGATTGACC 60.183 42.308 10.09 10.89 0.00 4.02
2320 2443 6.599638 AGGAAGGCATACAACTTAAGATTGAC 59.400 38.462 10.09 0.00 0.00 3.18
2321 2444 6.599244 CAGGAAGGCATACAACTTAAGATTGA 59.401 38.462 10.09 2.03 0.00 2.57
2322 2445 6.678900 GCAGGAAGGCATACAACTTAAGATTG 60.679 42.308 10.09 12.01 0.00 2.67
2323 2446 5.358160 GCAGGAAGGCATACAACTTAAGATT 59.642 40.000 10.09 0.00 0.00 2.40
2324 2447 4.884164 GCAGGAAGGCATACAACTTAAGAT 59.116 41.667 10.09 0.00 0.00 2.40
2325 2448 4.261801 GCAGGAAGGCATACAACTTAAGA 58.738 43.478 10.09 0.00 0.00 2.10
2326 2449 3.378427 GGCAGGAAGGCATACAACTTAAG 59.622 47.826 0.00 0.00 43.51 1.85
2327 2450 3.352648 GGCAGGAAGGCATACAACTTAA 58.647 45.455 0.00 0.00 43.51 1.85
2328 2451 2.999331 GGCAGGAAGGCATACAACTTA 58.001 47.619 0.00 0.00 43.51 2.24
2329 2452 1.839424 GGCAGGAAGGCATACAACTT 58.161 50.000 0.00 0.00 43.51 2.66
2330 2453 3.577389 GGCAGGAAGGCATACAACT 57.423 52.632 0.00 0.00 43.51 3.16
2346 2469 1.239296 TGCACTGAGAATGCTGTGGC 61.239 55.000 0.00 0.00 43.77 5.01
2347 2470 0.803117 CTGCACTGAGAATGCTGTGG 59.197 55.000 0.00 0.00 43.77 4.17
2348 2471 0.168348 GCTGCACTGAGAATGCTGTG 59.832 55.000 0.00 0.00 43.77 3.66
2349 2472 0.250597 TGCTGCACTGAGAATGCTGT 60.251 50.000 0.00 0.00 43.77 4.40
2350 2473 0.879090 TTGCTGCACTGAGAATGCTG 59.121 50.000 0.00 0.00 43.77 4.41
2351 2474 1.612676 TTTGCTGCACTGAGAATGCT 58.387 45.000 0.00 0.00 43.77 3.79
2352 2475 2.030540 TCTTTTGCTGCACTGAGAATGC 60.031 45.455 0.00 0.00 43.68 3.56
2353 2476 3.909776 TCTTTTGCTGCACTGAGAATG 57.090 42.857 0.00 0.00 0.00 2.67
2354 2477 4.521639 TCAATCTTTTGCTGCACTGAGAAT 59.478 37.500 0.00 0.00 32.61 2.40
2355 2478 3.884693 TCAATCTTTTGCTGCACTGAGAA 59.115 39.130 0.00 0.00 32.61 2.87
2356 2479 3.479489 TCAATCTTTTGCTGCACTGAGA 58.521 40.909 0.00 6.54 32.61 3.27
2573 2696 1.500474 ACCTAGCAGGCTCAAGCATA 58.500 50.000 4.13 0.00 44.36 3.14
2631 2765 2.371841 TCCACATCACCTATATGGCCAC 59.628 50.000 8.16 0.00 40.22 5.01
2632 2766 2.700354 TCCACATCACCTATATGGCCA 58.300 47.619 8.56 8.56 40.22 5.36
2633 2767 4.384208 GGTATCCACATCACCTATATGGCC 60.384 50.000 0.00 0.00 40.22 5.36
2634 2768 4.225042 TGGTATCCACATCACCTATATGGC 59.775 45.833 0.00 0.00 40.22 4.40
2635 2769 6.156775 TCATGGTATCCACATCACCTATATGG 59.843 42.308 0.00 0.00 35.80 2.74
2636 2770 7.186570 TCATGGTATCCACATCACCTATATG 57.813 40.000 0.00 0.00 35.80 1.78
2637 2771 8.270030 CAATCATGGTATCCACATCACCTATAT 58.730 37.037 0.00 0.00 35.80 0.86
2638 2772 7.237471 ACAATCATGGTATCCACATCACCTATA 59.763 37.037 0.00 0.00 35.80 1.31
2639 2773 6.044754 ACAATCATGGTATCCACATCACCTAT 59.955 38.462 0.00 0.00 35.80 2.57
2640 2774 5.369404 ACAATCATGGTATCCACATCACCTA 59.631 40.000 0.00 0.00 35.80 3.08
2888 3028 0.537371 AAGGCAACAGCTTTACCGCT 60.537 50.000 0.00 0.00 41.90 5.52
2889 3029 0.109735 GAAGGCAACAGCTTTACCGC 60.110 55.000 0.00 0.00 41.41 5.68
3035 3175 6.714810 ACTGAACATAGTTAACCATCAGCAAA 59.285 34.615 16.90 0.00 37.03 3.68
3036 3176 6.237901 ACTGAACATAGTTAACCATCAGCAA 58.762 36.000 16.90 0.00 37.03 3.91
3037 3177 5.804639 ACTGAACATAGTTAACCATCAGCA 58.195 37.500 16.90 5.21 37.03 4.41
3324 3471 5.733647 AGGGGAAGAGAAAATGGAGATTACT 59.266 40.000 0.00 0.00 0.00 2.24
3431 3578 2.264794 GTGGGCTGGGTAGTCACG 59.735 66.667 0.00 0.00 0.00 4.35
3485 3632 1.286354 TGCTTCCGTTAACGAAGCCG 61.286 55.000 35.12 21.15 44.17 5.52
3551 3714 5.888982 ATGTAAGTATCTTCAACCCGGAT 57.111 39.130 0.73 0.00 0.00 4.18
3830 4009 9.862149 GGGGTCTAAAGGAATTTTTCATATAGA 57.138 33.333 0.00 0.00 0.00 1.98
3831 4010 9.868160 AGGGGTCTAAAGGAATTTTTCATATAG 57.132 33.333 0.00 0.00 0.00 1.31
3833 4012 9.560860 AAAGGGGTCTAAAGGAATTTTTCATAT 57.439 29.630 0.00 0.00 0.00 1.78
3834 4013 8.811994 CAAAGGGGTCTAAAGGAATTTTTCATA 58.188 33.333 0.00 0.00 0.00 2.15
3835 4014 7.256655 CCAAAGGGGTCTAAAGGAATTTTTCAT 60.257 37.037 0.00 0.00 0.00 2.57
3836 4015 6.042666 CCAAAGGGGTCTAAAGGAATTTTTCA 59.957 38.462 0.00 0.00 0.00 2.69
3837 4016 6.464222 CCAAAGGGGTCTAAAGGAATTTTTC 58.536 40.000 0.00 0.00 0.00 2.29
3838 4017 6.433847 CCAAAGGGGTCTAAAGGAATTTTT 57.566 37.500 0.00 0.00 0.00 1.94
4021 4200 7.105241 AGGAAAACAATAGGAAATGAGATGC 57.895 36.000 0.00 0.00 0.00 3.91
4037 4216 5.586155 TTGGTTCATAGGGTAGGAAAACA 57.414 39.130 0.00 0.00 29.56 2.83
4038 4217 5.417894 CCTTTGGTTCATAGGGTAGGAAAAC 59.582 44.000 0.00 0.00 30.68 2.43
4197 4379 1.529865 GTACGTTGAAACCTGGCAGTC 59.470 52.381 14.43 5.17 0.00 3.51
4258 4440 6.602803 TGATCCTGAATTTAGCATGCAAGTAA 59.397 34.615 21.98 7.14 0.00 2.24
4314 4496 7.207383 ACGAATAGCAGTACTAAACATATGCA 58.793 34.615 1.58 0.00 36.15 3.96
4322 4504 8.821147 TGAAGAAAACGAATAGCAGTACTAAA 57.179 30.769 0.00 0.00 33.57 1.85
4540 4724 1.493871 CCAGCAAGAGAATGGGAGGAT 59.506 52.381 0.00 0.00 0.00 3.24
4664 4848 1.480498 GGGCCCCATCCGATACAAATT 60.480 52.381 12.23 0.00 0.00 1.82
4709 4893 0.169009 GAGCTGGAAAACCATGTCGC 59.831 55.000 0.00 0.00 0.00 5.19
4715 4899 1.734655 AGAGAGGAGCTGGAAAACCA 58.265 50.000 0.00 0.00 0.00 3.67
4723 4907 0.108233 GGTGAGCAAGAGAGGAGCTG 60.108 60.000 0.00 0.00 39.02 4.24
4755 4940 4.232091 AGAACCCTACTGAAACTCCAGAA 58.768 43.478 0.00 0.00 37.59 3.02
4757 4942 3.055747 GGAGAACCCTACTGAAACTCCAG 60.056 52.174 0.00 0.00 41.12 3.86
4811 4997 4.446385 CCACAAACTTCAATGCAACAGATG 59.554 41.667 0.00 0.00 0.00 2.90
4854 5045 7.612633 GGGAAAAATTGTACCAACCTAGATACA 59.387 37.037 0.00 0.00 0.00 2.29
4855 5046 7.201670 CGGGAAAAATTGTACCAACCTAGATAC 60.202 40.741 0.00 0.00 0.00 2.24
4867 5058 6.510478 GCTTTTGGTTTCGGGAAAAATTGTAC 60.510 38.462 0.00 0.00 31.33 2.90
4931 5130 8.704234 GTCATATAATGCGTTTGGTTTCAAAAA 58.296 29.630 0.00 0.00 43.56 1.94
4932 5131 7.867909 TGTCATATAATGCGTTTGGTTTCAAAA 59.132 29.630 0.00 0.00 43.56 2.44
4933 5132 7.371159 TGTCATATAATGCGTTTGGTTTCAAA 58.629 30.769 0.00 0.00 40.23 2.69
4934 5133 6.914259 TGTCATATAATGCGTTTGGTTTCAA 58.086 32.000 0.00 0.00 0.00 2.69
4980 5179 4.648626 GTGCCCTGCTGCTCACCA 62.649 66.667 0.00 0.00 0.00 4.17
4981 5180 4.341783 AGTGCCCTGCTGCTCACC 62.342 66.667 0.00 0.00 0.00 4.02
4982 5181 2.454832 TACAGTGCCCTGCTGCTCAC 62.455 60.000 0.00 4.21 42.81 3.51
4983 5182 2.176314 CTACAGTGCCCTGCTGCTCA 62.176 60.000 0.00 0.00 42.81 4.26
4984 5183 1.449246 CTACAGTGCCCTGCTGCTC 60.449 63.158 0.00 0.00 42.81 4.26
4985 5184 2.219875 ACTACAGTGCCCTGCTGCT 61.220 57.895 0.00 0.00 42.81 4.24
4986 5185 2.037136 CACTACAGTGCCCTGCTGC 61.037 63.158 0.00 0.00 42.81 5.25
4987 5186 0.251354 ATCACTACAGTGCCCTGCTG 59.749 55.000 4.43 0.00 45.25 4.41
4988 5187 0.987294 AATCACTACAGTGCCCTGCT 59.013 50.000 4.43 0.00 45.25 4.24
4989 5188 1.065854 AGAATCACTACAGTGCCCTGC 60.066 52.381 4.43 0.00 45.25 4.85
4990 5189 2.027745 ACAGAATCACTACAGTGCCCTG 60.028 50.000 16.58 16.58 45.25 4.45
4991 5190 2.234908 GACAGAATCACTACAGTGCCCT 59.765 50.000 4.43 0.00 45.25 5.19
4992 5191 2.622436 GACAGAATCACTACAGTGCCC 58.378 52.381 4.43 0.00 45.25 5.36
4993 5192 2.028112 TGGACAGAATCACTACAGTGCC 60.028 50.000 4.43 0.00 45.25 5.01
4994 5193 3.319137 TGGACAGAATCACTACAGTGC 57.681 47.619 4.43 0.00 45.25 4.40
4995 5194 5.240891 ACAATGGACAGAATCACTACAGTG 58.759 41.667 2.84 2.84 46.91 3.66
4996 5195 5.489792 ACAATGGACAGAATCACTACAGT 57.510 39.130 0.00 0.00 0.00 3.55
4997 5196 5.521735 GCTACAATGGACAGAATCACTACAG 59.478 44.000 0.00 0.00 0.00 2.74
4998 5197 5.419542 GCTACAATGGACAGAATCACTACA 58.580 41.667 0.00 0.00 0.00 2.74
4999 5198 4.504461 CGCTACAATGGACAGAATCACTAC 59.496 45.833 0.00 0.00 0.00 2.73
5000 5199 4.401202 TCGCTACAATGGACAGAATCACTA 59.599 41.667 0.00 0.00 0.00 2.74
5001 5200 3.195610 TCGCTACAATGGACAGAATCACT 59.804 43.478 0.00 0.00 0.00 3.41
5002 5201 3.521560 TCGCTACAATGGACAGAATCAC 58.478 45.455 0.00 0.00 0.00 3.06
5003 5202 3.885724 TCGCTACAATGGACAGAATCA 57.114 42.857 0.00 0.00 0.00 2.57
5004 5203 4.033358 CAGTTCGCTACAATGGACAGAATC 59.967 45.833 0.00 0.00 0.00 2.52
5005 5204 3.935203 CAGTTCGCTACAATGGACAGAAT 59.065 43.478 0.00 0.00 0.00 2.40
5006 5205 3.325870 CAGTTCGCTACAATGGACAGAA 58.674 45.455 0.00 0.00 0.00 3.02
5007 5206 2.353704 CCAGTTCGCTACAATGGACAGA 60.354 50.000 0.00 0.00 32.55 3.41
5008 5207 2.002586 CCAGTTCGCTACAATGGACAG 58.997 52.381 0.00 0.00 32.55 3.51
5009 5208 1.621317 TCCAGTTCGCTACAATGGACA 59.379 47.619 0.00 0.00 35.16 4.02
5010 5209 2.380084 TCCAGTTCGCTACAATGGAC 57.620 50.000 0.00 0.00 35.16 4.02
5011 5210 1.066430 GGTCCAGTTCGCTACAATGGA 60.066 52.381 0.00 0.00 37.71 3.41
5012 5211 1.369625 GGTCCAGTTCGCTACAATGG 58.630 55.000 0.00 0.00 0.00 3.16
5013 5212 1.066143 AGGGTCCAGTTCGCTACAATG 60.066 52.381 0.00 0.00 0.00 2.82
5014 5213 1.066143 CAGGGTCCAGTTCGCTACAAT 60.066 52.381 0.00 0.00 0.00 2.71
5015 5214 0.320374 CAGGGTCCAGTTCGCTACAA 59.680 55.000 0.00 0.00 0.00 2.41
5016 5215 0.830444 ACAGGGTCCAGTTCGCTACA 60.830 55.000 0.00 0.00 0.00 2.74
5017 5216 1.134560 CTACAGGGTCCAGTTCGCTAC 59.865 57.143 0.00 0.00 0.00 3.58
5018 5217 1.471119 CTACAGGGTCCAGTTCGCTA 58.529 55.000 0.00 0.00 0.00 4.26
5019 5218 1.889530 GCTACAGGGTCCAGTTCGCT 61.890 60.000 0.00 0.00 0.00 4.93
5020 5219 1.448013 GCTACAGGGTCCAGTTCGC 60.448 63.158 0.00 0.00 0.00 4.70
5021 5220 1.153823 CGCTACAGGGTCCAGTTCG 60.154 63.158 0.00 0.00 0.00 3.95
5022 5221 0.173708 CTCGCTACAGGGTCCAGTTC 59.826 60.000 0.00 0.00 0.00 3.01
5023 5222 1.889530 GCTCGCTACAGGGTCCAGTT 61.890 60.000 0.00 0.00 0.00 3.16
5024 5223 2.352032 GCTCGCTACAGGGTCCAGT 61.352 63.158 0.00 0.00 0.00 4.00
5025 5224 2.055042 AGCTCGCTACAGGGTCCAG 61.055 63.158 0.00 0.00 0.00 3.86
5026 5225 2.037367 AGCTCGCTACAGGGTCCA 59.963 61.111 0.00 0.00 0.00 4.02
5027 5226 2.496817 CAGCTCGCTACAGGGTCC 59.503 66.667 0.00 0.00 0.00 4.46
5028 5227 1.889530 AACCAGCTCGCTACAGGGTC 61.890 60.000 0.00 0.00 0.00 4.46
5029 5228 1.889530 GAACCAGCTCGCTACAGGGT 61.890 60.000 0.00 0.00 0.00 4.34
5030 5229 1.153549 GAACCAGCTCGCTACAGGG 60.154 63.158 0.00 0.00 0.00 4.45
5031 5230 0.737715 GTGAACCAGCTCGCTACAGG 60.738 60.000 0.00 0.00 0.00 4.00
5032 5231 0.244994 AGTGAACCAGCTCGCTACAG 59.755 55.000 0.00 0.00 34.40 2.74
5033 5232 1.541379 TAGTGAACCAGCTCGCTACA 58.459 50.000 0.00 0.00 37.37 2.74
5034 5233 1.910688 GTAGTGAACCAGCTCGCTAC 58.089 55.000 8.20 8.20 46.51 3.58
5035 5234 0.450583 CGTAGTGAACCAGCTCGCTA 59.549 55.000 0.00 0.00 37.37 4.26
5036 5235 1.213013 CGTAGTGAACCAGCTCGCT 59.787 57.895 0.00 0.00 39.47 4.93
5037 5236 1.805945 CCGTAGTGAACCAGCTCGC 60.806 63.158 0.00 0.00 0.00 5.03
5038 5237 1.585006 ACCGTAGTGAACCAGCTCG 59.415 57.895 0.00 0.00 0.00 5.03
5086 5285 9.814899 ACAAATCGCATTTCCATTAAATATTCA 57.185 25.926 0.00 0.00 35.54 2.57
5097 5296 9.657121 GAAATTTAAAAACAAATCGCATTTCCA 57.343 25.926 0.00 0.00 0.00 3.53
5098 5297 9.877137 AGAAATTTAAAAACAAATCGCATTTCC 57.123 25.926 0.00 0.00 0.00 3.13
5100 5299 9.662545 CCAGAAATTTAAAAACAAATCGCATTT 57.337 25.926 0.00 0.00 0.00 2.32
5101 5300 9.050601 TCCAGAAATTTAAAAACAAATCGCATT 57.949 25.926 0.00 0.00 0.00 3.56
5102 5301 8.600449 TCCAGAAATTTAAAAACAAATCGCAT 57.400 26.923 0.00 0.00 0.00 4.73
5103 5302 8.425577 TTCCAGAAATTTAAAAACAAATCGCA 57.574 26.923 0.00 0.00 0.00 5.10
5104 5303 9.709600 TTTTCCAGAAATTTAAAAACAAATCGC 57.290 25.926 0.00 0.00 0.00 4.58
5138 5337 9.377383 CGTTCACGTTTTTAGAAAGTTATCAAT 57.623 29.630 0.00 0.00 34.11 2.57
5139 5338 8.756376 CGTTCACGTTTTTAGAAAGTTATCAA 57.244 30.769 0.00 0.00 34.11 2.57
5227 5426 9.657419 AGATTTTCAAGAAATTGTTCACAGTTT 57.343 25.926 0.41 0.41 38.28 2.66
5228 5427 9.090692 CAGATTTTCAAGAAATTGTTCACAGTT 57.909 29.630 0.00 0.00 36.09 3.16
5229 5428 8.469200 TCAGATTTTCAAGAAATTGTTCACAGT 58.531 29.630 0.00 0.00 36.09 3.55
5230 5429 8.861033 TCAGATTTTCAAGAAATTGTTCACAG 57.139 30.769 0.00 0.00 36.09 3.66
5231 5430 9.650539 TTTCAGATTTTCAAGAAATTGTTCACA 57.349 25.926 0.00 0.00 36.09 3.58
5298 5497 8.599774 GCAGTGCTTTTAAAAAGTTGTGATTTA 58.400 29.630 8.18 0.00 0.00 1.40
5299 5498 7.463544 GCAGTGCTTTTAAAAAGTTGTGATTT 58.536 30.769 8.18 0.00 0.00 2.17
5300 5499 6.237808 CGCAGTGCTTTTAAAAAGTTGTGATT 60.238 34.615 14.33 0.00 0.00 2.57
5301 5500 5.231991 CGCAGTGCTTTTAAAAAGTTGTGAT 59.768 36.000 14.33 0.00 0.00 3.06
5302 5501 4.560819 CGCAGTGCTTTTAAAAAGTTGTGA 59.439 37.500 14.33 0.00 0.00 3.58
5303 5502 4.560819 TCGCAGTGCTTTTAAAAAGTTGTG 59.439 37.500 14.33 5.61 0.00 3.33
5304 5503 4.739195 TCGCAGTGCTTTTAAAAAGTTGT 58.261 34.783 14.33 0.00 0.00 3.32
5305 5504 5.694674 TTCGCAGTGCTTTTAAAAAGTTG 57.305 34.783 14.33 0.55 0.00 3.16
5306 5505 6.713792 TTTTCGCAGTGCTTTTAAAAAGTT 57.286 29.167 14.33 0.00 0.00 2.66
5307 5506 6.902224 ATTTTCGCAGTGCTTTTAAAAAGT 57.098 29.167 14.33 0.00 0.00 2.66
5308 5507 9.862585 ATAAATTTTCGCAGTGCTTTTAAAAAG 57.137 25.926 14.33 0.00 0.00 2.27
5310 5509 9.643652 CAATAAATTTTCGCAGTGCTTTTAAAA 57.356 25.926 14.33 13.71 0.00 1.52
5311 5510 9.035607 TCAATAAATTTTCGCAGTGCTTTTAAA 57.964 25.926 14.33 8.19 0.00 1.52
5312 5511 8.581057 TCAATAAATTTTCGCAGTGCTTTTAA 57.419 26.923 14.33 2.56 0.00 1.52
5313 5512 8.581057 TTCAATAAATTTTCGCAGTGCTTTTA 57.419 26.923 14.33 9.40 0.00 1.52
5314 5513 7.475771 TTCAATAAATTTTCGCAGTGCTTTT 57.524 28.000 14.33 7.63 0.00 2.27
5315 5514 7.475771 TTTCAATAAATTTTCGCAGTGCTTT 57.524 28.000 14.33 8.91 0.00 3.51
5316 5515 7.475771 TTTTCAATAAATTTTCGCAGTGCTT 57.524 28.000 14.33 1.70 0.00 3.91
5317 5516 7.384660 TCATTTTCAATAAATTTTCGCAGTGCT 59.615 29.630 14.33 0.00 0.00 4.40
5318 5517 7.508965 TCATTTTCAATAAATTTTCGCAGTGC 58.491 30.769 4.58 4.58 0.00 4.40
5319 5518 8.164153 CCTCATTTTCAATAAATTTTCGCAGTG 58.836 33.333 0.00 0.00 0.00 3.66
5320 5519 8.087750 TCCTCATTTTCAATAAATTTTCGCAGT 58.912 29.630 0.00 0.00 0.00 4.40
5321 5520 8.375465 GTCCTCATTTTCAATAAATTTTCGCAG 58.625 33.333 0.00 0.00 0.00 5.18
5322 5521 7.869937 TGTCCTCATTTTCAATAAATTTTCGCA 59.130 29.630 0.00 0.00 0.00 5.10
5323 5522 8.162245 GTGTCCTCATTTTCAATAAATTTTCGC 58.838 33.333 0.00 0.00 0.00 4.70
5324 5523 9.410556 AGTGTCCTCATTTTCAATAAATTTTCG 57.589 29.630 0.00 0.00 0.00 3.46
5417 5616 3.570125 CCTTTCCGGCTCTTTCTCTTTTT 59.430 43.478 0.00 0.00 0.00 1.94
5418 5617 3.149981 CCTTTCCGGCTCTTTCTCTTTT 58.850 45.455 0.00 0.00 0.00 2.27
5419 5618 2.372172 TCCTTTCCGGCTCTTTCTCTTT 59.628 45.455 0.00 0.00 0.00 2.52
5420 5619 1.978580 TCCTTTCCGGCTCTTTCTCTT 59.021 47.619 0.00 0.00 0.00 2.85
5421 5620 1.645710 TCCTTTCCGGCTCTTTCTCT 58.354 50.000 0.00 0.00 0.00 3.10
5422 5621 2.474410 TTCCTTTCCGGCTCTTTCTC 57.526 50.000 0.00 0.00 0.00 2.87
5423 5622 2.951229 TTTCCTTTCCGGCTCTTTCT 57.049 45.000 0.00 0.00 0.00 2.52
5424 5623 3.081804 TGATTTCCTTTCCGGCTCTTTC 58.918 45.455 0.00 0.00 0.00 2.62
5425 5624 3.084786 CTGATTTCCTTTCCGGCTCTTT 58.915 45.455 0.00 0.00 0.00 2.52
5426 5625 2.305927 TCTGATTTCCTTTCCGGCTCTT 59.694 45.455 0.00 0.00 0.00 2.85
5427 5626 1.909302 TCTGATTTCCTTTCCGGCTCT 59.091 47.619 0.00 0.00 0.00 4.09
5428 5627 2.403252 TCTGATTTCCTTTCCGGCTC 57.597 50.000 0.00 0.00 0.00 4.70
5429 5628 2.879103 TTCTGATTTCCTTTCCGGCT 57.121 45.000 0.00 0.00 0.00 5.52
5430 5629 3.575630 GTTTTCTGATTTCCTTTCCGGC 58.424 45.455 0.00 0.00 0.00 6.13
5431 5630 3.572255 TGGTTTTCTGATTTCCTTTCCGG 59.428 43.478 0.00 0.00 0.00 5.14
5432 5631 4.278419 AGTGGTTTTCTGATTTCCTTTCCG 59.722 41.667 0.00 0.00 0.00 4.30
5433 5632 5.791336 AGTGGTTTTCTGATTTCCTTTCC 57.209 39.130 0.00 0.00 0.00 3.13
5434 5633 9.594478 TTTTTAGTGGTTTTCTGATTTCCTTTC 57.406 29.630 0.00 0.00 0.00 2.62
5435 5634 9.378551 GTTTTTAGTGGTTTTCTGATTTCCTTT 57.621 29.630 0.00 0.00 0.00 3.11
5436 5635 8.536175 TGTTTTTAGTGGTTTTCTGATTTCCTT 58.464 29.630 0.00 0.00 0.00 3.36
5437 5636 8.073467 TGTTTTTAGTGGTTTTCTGATTTCCT 57.927 30.769 0.00 0.00 0.00 3.36
5438 5637 8.600625 GTTGTTTTTAGTGGTTTTCTGATTTCC 58.399 33.333 0.00 0.00 0.00 3.13
5439 5638 9.145865 TGTTGTTTTTAGTGGTTTTCTGATTTC 57.854 29.630 0.00 0.00 0.00 2.17
5440 5639 9.495572 TTGTTGTTTTTAGTGGTTTTCTGATTT 57.504 25.926 0.00 0.00 0.00 2.17
5441 5640 9.495572 TTTGTTGTTTTTAGTGGTTTTCTGATT 57.504 25.926 0.00 0.00 0.00 2.57
5442 5641 9.495572 TTTTGTTGTTTTTAGTGGTTTTCTGAT 57.504 25.926 0.00 0.00 0.00 2.90
5443 5642 8.888579 TTTTGTTGTTTTTAGTGGTTTTCTGA 57.111 26.923 0.00 0.00 0.00 3.27
5467 5666 6.211384 AGGTTCCTGGATCGATTTTCATTTTT 59.789 34.615 0.00 0.00 0.00 1.94
5468 5667 5.716703 AGGTTCCTGGATCGATTTTCATTTT 59.283 36.000 0.00 0.00 0.00 1.82
5469 5668 5.264395 AGGTTCCTGGATCGATTTTCATTT 58.736 37.500 0.00 0.00 0.00 2.32
5470 5669 4.860022 AGGTTCCTGGATCGATTTTCATT 58.140 39.130 0.00 0.00 0.00 2.57
5471 5670 4.510167 AGGTTCCTGGATCGATTTTCAT 57.490 40.909 0.00 0.00 0.00 2.57
5472 5671 4.019321 AGAAGGTTCCTGGATCGATTTTCA 60.019 41.667 0.00 0.00 0.00 2.69
5473 5672 4.518249 AGAAGGTTCCTGGATCGATTTTC 58.482 43.478 0.00 0.44 0.00 2.29
5474 5673 4.576330 AGAAGGTTCCTGGATCGATTTT 57.424 40.909 0.00 0.00 0.00 1.82
5475 5674 4.962995 TCTAGAAGGTTCCTGGATCGATTT 59.037 41.667 0.00 0.00 0.00 2.17
5476 5675 4.547671 TCTAGAAGGTTCCTGGATCGATT 58.452 43.478 0.00 0.00 0.00 3.34
5477 5676 4.186077 TCTAGAAGGTTCCTGGATCGAT 57.814 45.455 0.00 0.00 0.00 3.59
5478 5677 3.664551 TCTAGAAGGTTCCTGGATCGA 57.335 47.619 0.00 0.00 0.00 3.59
5479 5678 4.314740 CTTCTAGAAGGTTCCTGGATCG 57.685 50.000 22.67 0.00 34.87 3.69
5500 5699 6.292610 GGTTTTCTACCGGTTTTGGGAACC 62.293 50.000 15.04 15.90 43.90 3.62
5501 5700 3.243501 GGTTTTCTACCGGTTTTGGGAAC 60.244 47.826 15.04 10.75 37.12 3.62
5502 5701 2.957680 GGTTTTCTACCGGTTTTGGGAA 59.042 45.455 15.04 7.45 37.12 3.97
5503 5702 2.585330 GGTTTTCTACCGGTTTTGGGA 58.415 47.619 15.04 0.76 37.12 4.37
5514 5713 6.424207 GCATAGCCTAGTGTATGGTTTTCTAC 59.576 42.308 9.50 0.00 0.00 2.59
5515 5714 6.326583 AGCATAGCCTAGTGTATGGTTTTCTA 59.673 38.462 7.23 0.00 34.47 2.10
5516 5715 5.131142 AGCATAGCCTAGTGTATGGTTTTCT 59.869 40.000 7.23 0.00 34.47 2.52
5517 5716 5.368989 AGCATAGCCTAGTGTATGGTTTTC 58.631 41.667 7.23 0.00 34.47 2.29
5518 5717 5.373812 AGCATAGCCTAGTGTATGGTTTT 57.626 39.130 7.23 0.00 34.47 2.43
5519 5718 6.494666 TTAGCATAGCCTAGTGTATGGTTT 57.505 37.500 14.89 0.00 38.16 3.27
5520 5719 6.494666 TTTAGCATAGCCTAGTGTATGGTT 57.505 37.500 14.89 0.00 38.16 3.67
5521 5720 6.688073 ATTTAGCATAGCCTAGTGTATGGT 57.312 37.500 14.37 14.37 39.88 3.55
5522 5721 7.268586 CCTATTTAGCATAGCCTAGTGTATGG 58.731 42.308 9.50 0.00 0.00 2.74
5523 5722 6.758886 GCCTATTTAGCATAGCCTAGTGTATG 59.241 42.308 4.80 4.80 0.00 2.39
5524 5723 6.127026 GGCCTATTTAGCATAGCCTAGTGTAT 60.127 42.308 0.00 0.00 0.00 2.29
5525 5724 5.187186 GGCCTATTTAGCATAGCCTAGTGTA 59.813 44.000 0.00 0.00 0.00 2.90
5526 5725 4.020128 GGCCTATTTAGCATAGCCTAGTGT 60.020 45.833 0.00 0.00 0.00 3.55
5527 5726 4.508662 GGCCTATTTAGCATAGCCTAGTG 58.491 47.826 0.00 0.00 0.00 2.74
5528 5727 3.195825 CGGCCTATTTAGCATAGCCTAGT 59.804 47.826 0.00 0.00 0.00 2.57
5529 5728 3.430929 CCGGCCTATTTAGCATAGCCTAG 60.431 52.174 0.00 0.00 0.00 3.02
5530 5729 2.500098 CCGGCCTATTTAGCATAGCCTA 59.500 50.000 0.00 0.00 0.00 3.93
5531 5730 1.279271 CCGGCCTATTTAGCATAGCCT 59.721 52.381 0.00 0.00 0.00 4.58
5532 5731 1.739067 CCGGCCTATTTAGCATAGCC 58.261 55.000 0.00 0.00 0.00 3.93
5533 5732 1.087501 GCCGGCCTATTTAGCATAGC 58.912 55.000 18.11 0.00 0.00 2.97
5534 5733 1.679032 GGGCCGGCCTATTTAGCATAG 60.679 57.143 42.70 0.00 36.10 2.23
5535 5734 0.326927 GGGCCGGCCTATTTAGCATA 59.673 55.000 42.70 0.00 36.10 3.14
5536 5735 1.074951 GGGCCGGCCTATTTAGCAT 59.925 57.895 42.70 0.00 36.10 3.79
5537 5736 2.379459 TGGGCCGGCCTATTTAGCA 61.379 57.895 42.70 27.93 36.10 3.49
5538 5737 1.897137 GTGGGCCGGCCTATTTAGC 60.897 63.158 42.70 25.58 36.10 3.09
5539 5738 1.228154 GGTGGGCCGGCCTATTTAG 60.228 63.158 42.70 0.00 36.10 1.85
5540 5739 1.572689 TTGGTGGGCCGGCCTATTTA 61.573 55.000 42.70 24.69 37.67 1.40
5541 5740 2.854300 CTTGGTGGGCCGGCCTATTT 62.854 60.000 42.70 0.00 37.67 1.40
5542 5741 3.343326 TTGGTGGGCCGGCCTATT 61.343 61.111 42.70 0.00 37.67 1.73
5543 5742 3.809013 CTTGGTGGGCCGGCCTAT 61.809 66.667 42.70 0.00 37.67 2.57
5548 5747 2.876368 GATCACTCTTGGTGGGCCGG 62.876 65.000 0.00 0.00 45.38 6.13
5549 5748 1.450312 GATCACTCTTGGTGGGCCG 60.450 63.158 0.00 0.00 45.38 6.13
5550 5749 1.450312 CGATCACTCTTGGTGGGCC 60.450 63.158 0.00 0.00 45.38 5.80
5551 5750 2.109126 GCGATCACTCTTGGTGGGC 61.109 63.158 0.00 0.00 45.38 5.36
5552 5751 1.450312 GGCGATCACTCTTGGTGGG 60.450 63.158 0.00 0.00 45.38 4.61
5553 5752 0.460987 GAGGCGATCACTCTTGGTGG 60.461 60.000 7.07 0.00 45.38 4.61
5554 5753 0.803768 CGAGGCGATCACTCTTGGTG 60.804 60.000 11.36 0.00 46.60 4.17
5555 5754 1.513158 CGAGGCGATCACTCTTGGT 59.487 57.895 11.36 0.00 32.83 3.67
5556 5755 1.880340 GCGAGGCGATCACTCTTGG 60.880 63.158 11.36 0.11 32.83 3.61
5557 5756 1.880340 GGCGAGGCGATCACTCTTG 60.880 63.158 11.36 2.45 32.83 3.02
5558 5757 0.752009 TAGGCGAGGCGATCACTCTT 60.752 55.000 11.36 2.25 32.83 2.85
5559 5758 1.152943 TAGGCGAGGCGATCACTCT 60.153 57.895 11.36 0.00 32.83 3.24
5560 5759 1.284408 CTAGGCGAGGCGATCACTC 59.716 63.158 4.70 4.70 0.00 3.51
5561 5760 2.851071 GCTAGGCGAGGCGATCACT 61.851 63.158 0.00 0.00 0.00 3.41
5562 5761 2.355244 GCTAGGCGAGGCGATCAC 60.355 66.667 0.00 0.00 0.00 3.06
5563 5762 2.519541 AGCTAGGCGAGGCGATCA 60.520 61.111 0.00 0.00 0.00 2.92
5564 5763 2.049618 CAGCTAGGCGAGGCGATC 60.050 66.667 0.00 0.00 0.00 3.69
5565 5764 2.835431 ACAGCTAGGCGAGGCGAT 60.835 61.111 0.00 0.00 0.00 4.58
5566 5765 3.826754 CACAGCTAGGCGAGGCGA 61.827 66.667 0.00 0.00 0.00 5.54
5567 5766 4.135153 ACACAGCTAGGCGAGGCG 62.135 66.667 0.00 0.00 0.00 5.52
5568 5767 2.510238 CACACAGCTAGGCGAGGC 60.510 66.667 0.00 0.00 0.00 4.70
5569 5768 0.320771 AAACACACAGCTAGGCGAGG 60.321 55.000 0.00 0.00 0.00 4.63
5570 5769 0.792640 CAAACACACAGCTAGGCGAG 59.207 55.000 0.00 0.00 0.00 5.03
5571 5770 0.602638 CCAAACACACAGCTAGGCGA 60.603 55.000 0.00 0.00 0.00 5.54
5572 5771 1.577328 CCCAAACACACAGCTAGGCG 61.577 60.000 0.00 0.00 0.00 5.52
5573 5772 1.866853 GCCCAAACACACAGCTAGGC 61.867 60.000 0.00 0.00 0.00 3.93
5574 5773 0.537143 TGCCCAAACACACAGCTAGG 60.537 55.000 0.00 0.00 0.00 3.02
5575 5774 1.001378 GTTGCCCAAACACACAGCTAG 60.001 52.381 0.00 0.00 38.75 3.42
5576 5775 1.028905 GTTGCCCAAACACACAGCTA 58.971 50.000 0.00 0.00 38.75 3.32
5577 5776 1.675720 GGTTGCCCAAACACACAGCT 61.676 55.000 0.00 0.00 40.86 4.24
5578 5777 1.227234 GGTTGCCCAAACACACAGC 60.227 57.895 0.00 0.00 40.86 4.40
5579 5778 2.197250 TGGTTGCCCAAACACACAG 58.803 52.632 0.00 0.00 40.86 3.66
5580 5779 4.442038 TGGTTGCCCAAACACACA 57.558 50.000 0.00 0.00 40.86 3.72
5584 5783 1.040339 GTCCAGTGGTTGCCCAAACA 61.040 55.000 9.54 0.00 44.15 2.83
5585 5784 1.739667 GTCCAGTGGTTGCCCAAAC 59.260 57.895 9.54 0.00 44.15 2.93
5586 5785 1.826054 CGTCCAGTGGTTGCCCAAA 60.826 57.895 9.54 0.00 44.15 3.28
5587 5786 2.203280 CGTCCAGTGGTTGCCCAA 60.203 61.111 9.54 0.00 44.15 4.12
5588 5787 4.947147 GCGTCCAGTGGTTGCCCA 62.947 66.667 9.54 0.00 38.87 5.36
5589 5788 4.947147 TGCGTCCAGTGGTTGCCC 62.947 66.667 20.56 4.19 0.00 5.36
5590 5789 3.357079 CTGCGTCCAGTGGTTGCC 61.357 66.667 20.56 5.68 34.31 4.52
5598 5797 1.588674 TTTAACACCACTGCGTCCAG 58.411 50.000 0.00 0.00 44.80 3.86
5599 5798 1.944024 CTTTTAACACCACTGCGTCCA 59.056 47.619 0.00 0.00 0.00 4.02
5600 5799 2.215196 TCTTTTAACACCACTGCGTCC 58.785 47.619 0.00 0.00 0.00 4.79
5601 5800 3.955771 TTCTTTTAACACCACTGCGTC 57.044 42.857 0.00 0.00 0.00 5.19
5602 5801 4.396790 TCTTTTCTTTTAACACCACTGCGT 59.603 37.500 0.00 0.00 0.00 5.24
5603 5802 4.915704 TCTTTTCTTTTAACACCACTGCG 58.084 39.130 0.00 0.00 0.00 5.18
5604 5803 6.253512 CAGTTCTTTTCTTTTAACACCACTGC 59.746 38.462 0.00 0.00 0.00 4.40
5605 5804 7.312899 ACAGTTCTTTTCTTTTAACACCACTG 58.687 34.615 0.00 0.00 34.28 3.66
5606 5805 7.462571 ACAGTTCTTTTCTTTTAACACCACT 57.537 32.000 0.00 0.00 0.00 4.00
5607 5806 7.597369 ACAACAGTTCTTTTCTTTTAACACCAC 59.403 33.333 0.00 0.00 0.00 4.16
5608 5807 7.662897 ACAACAGTTCTTTTCTTTTAACACCA 58.337 30.769 0.00 0.00 0.00 4.17
5609 5808 9.069078 GTACAACAGTTCTTTTCTTTTAACACC 57.931 33.333 0.00 0.00 0.00 4.16
5610 5809 9.615295 TGTACAACAGTTCTTTTCTTTTAACAC 57.385 29.630 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.