Multiple sequence alignment - TraesCS7D01G169100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G169100 chr7D 100.000 2694 0 0 1 2694 119890350 119893043 0.000000e+00 4975.0
1 TraesCS7D01G169100 chr7A 92.767 2060 71 32 658 2688 124789620 124791630 0.000000e+00 2907.0
2 TraesCS7D01G169100 chr7A 75.340 515 73 32 4 498 691724501 691724021 5.880000e-47 198.0
3 TraesCS7D01G169100 chr7B 89.228 1996 113 44 1 1930 81421256 81423215 0.000000e+00 2401.0
4 TraesCS7D01G169100 chr7B 87.708 602 34 22 2110 2694 81423320 81423898 0.000000e+00 665.0
5 TraesCS7D01G169100 chr7B 79.775 356 61 9 47 396 566314446 566314796 5.760000e-62 248.0
6 TraesCS7D01G169100 chr5D 79.618 628 76 35 3 612 134481637 134481044 1.160000e-108 403.0
7 TraesCS7D01G169100 chr4D 78.642 604 99 22 1 577 464147726 464147126 9.110000e-100 374.0
8 TraesCS7D01G169100 chr4B 78.318 535 89 19 1 524 103049641 103049123 1.200000e-83 320.0
9 TraesCS7D01G169100 chr4B 82.759 87 10 3 1980 2066 416883095 416883176 3.720000e-09 73.1
10 TraesCS7D01G169100 chr2A 77.778 567 87 22 47 582 491531749 491531191 2.010000e-81 313.0
11 TraesCS7D01G169100 chr1D 79.825 456 65 17 122 555 67859394 67859844 9.370000e-80 307.0
12 TraesCS7D01G169100 chr6B 81.044 364 49 13 3 351 612130163 612129805 3.420000e-69 272.0
13 TraesCS7D01G169100 chr3B 76.749 529 93 19 3 505 736657152 736657676 4.420000e-68 268.0
14 TraesCS7D01G169100 chr3B 74.557 621 109 27 1 589 429415071 429414468 2.700000e-55 226.0
15 TraesCS7D01G169100 chr2D 75.680 588 99 27 1 562 425737955 425737386 1.240000e-63 254.0
16 TraesCS7D01G169100 chr5A 80.573 314 44 9 271 576 4993368 4993672 2.700000e-55 226.0
17 TraesCS7D01G169100 chr5A 75.285 526 96 21 1 505 553167654 553168166 1.260000e-53 220.0
18 TraesCS7D01G169100 chr2B 77.922 385 53 18 256 614 495331047 495330669 7.560000e-51 211.0
19 TraesCS7D01G169100 chr6D 79.039 229 38 7 300 518 464520241 464520469 6.010000e-32 148.0
20 TraesCS7D01G169100 chr5B 76.159 302 47 16 300 589 631470826 631470538 4.680000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G169100 chr7D 119890350 119893043 2693 False 4975 4975 100.000 1 2694 1 chr7D.!!$F1 2693
1 TraesCS7D01G169100 chr7A 124789620 124791630 2010 False 2907 2907 92.767 658 2688 1 chr7A.!!$F1 2030
2 TraesCS7D01G169100 chr7B 81421256 81423898 2642 False 1533 2401 88.468 1 2694 2 chr7B.!!$F2 2693
3 TraesCS7D01G169100 chr5D 134481044 134481637 593 True 403 403 79.618 3 612 1 chr5D.!!$R1 609
4 TraesCS7D01G169100 chr4D 464147126 464147726 600 True 374 374 78.642 1 577 1 chr4D.!!$R1 576
5 TraesCS7D01G169100 chr4B 103049123 103049641 518 True 320 320 78.318 1 524 1 chr4B.!!$R1 523
6 TraesCS7D01G169100 chr2A 491531191 491531749 558 True 313 313 77.778 47 582 1 chr2A.!!$R1 535
7 TraesCS7D01G169100 chr3B 736657152 736657676 524 False 268 268 76.749 3 505 1 chr3B.!!$F1 502
8 TraesCS7D01G169100 chr3B 429414468 429415071 603 True 226 226 74.557 1 589 1 chr3B.!!$R1 588
9 TraesCS7D01G169100 chr2D 425737386 425737955 569 True 254 254 75.680 1 562 1 chr2D.!!$R1 561
10 TraesCS7D01G169100 chr5A 553167654 553168166 512 False 220 220 75.285 1 505 1 chr5A.!!$F2 504

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
828 979 0.034089 GACCCATAAGCAAGCACCCT 60.034 55.0 0.0 0.0 0.0 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2208 2410 0.391263 GGGGTGTCCGATGTCTTCAC 60.391 60.0 0.0 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 0.036590 GCACCAAAACCCTACCCGTA 59.963 55.000 0.00 0.00 0.00 4.02
25 26 1.340308 ACCAAAACCCTACCCGTATGC 60.340 52.381 0.00 0.00 0.00 3.14
269 331 2.004589 AGGTTCAGGAGGAGTAGGAGT 58.995 52.381 0.00 0.00 0.00 3.85
277 339 1.422402 GAGGAGTAGGAGTCGGAGGAT 59.578 57.143 0.00 0.00 0.00 3.24
293 355 1.407656 GGATGATGTGGGGGACGCTA 61.408 60.000 0.00 0.00 43.80 4.26
306 368 2.898840 CGCTAGGGACGCGGAGTA 60.899 66.667 12.47 0.00 46.32 2.59
326 401 1.410850 GCAGGGATCCTCGATTCCCA 61.411 60.000 23.04 0.00 44.63 4.37
335 410 4.524318 CGATTCCCACCGGTCGGG 62.524 72.222 27.24 27.24 46.03 5.14
408 483 1.904144 CCGCGAAAGTTGACGAGATA 58.096 50.000 8.23 0.00 0.00 1.98
433 532 4.403752 TCGCATATATGGATGAGGAGAAGG 59.596 45.833 14.51 0.00 0.00 3.46
434 533 4.403752 CGCATATATGGATGAGGAGAAGGA 59.596 45.833 14.51 0.00 0.00 3.36
435 534 5.451659 CGCATATATGGATGAGGAGAAGGAG 60.452 48.000 14.51 0.00 0.00 3.69
518 625 3.966154 ACGACGAATCATAGCTAAGGTG 58.034 45.455 0.00 0.00 0.00 4.00
519 626 3.380637 ACGACGAATCATAGCTAAGGTGT 59.619 43.478 0.00 0.00 0.00 4.16
524 640 5.066893 ACGAATCATAGCTAAGGTGTCGTAA 59.933 40.000 16.39 0.00 37.43 3.18
532 648 5.770417 AGCTAAGGTGTCGTAATACATAGC 58.230 41.667 0.00 0.00 35.54 2.97
589 705 5.366482 TGAAATATGAAAGACCCGGATGA 57.634 39.130 0.73 0.00 0.00 2.92
595 711 3.153919 TGAAAGACCCGGATGAAAAAGG 58.846 45.455 0.73 0.00 0.00 3.11
604 720 5.175127 CCCGGATGAAAAAGGGTAAATTTG 58.825 41.667 0.73 0.00 39.05 2.32
606 722 6.099341 CCGGATGAAAAAGGGTAAATTTGAG 58.901 40.000 0.00 0.00 0.00 3.02
614 730 5.584551 AAGGGTAAATTTGAGACCTGACT 57.415 39.130 8.22 0.00 33.48 3.41
616 732 4.351111 AGGGTAAATTTGAGACCTGACTGT 59.649 41.667 8.22 0.00 33.48 3.55
618 734 5.535030 GGGTAAATTTGAGACCTGACTGTTT 59.465 40.000 8.22 0.00 33.48 2.83
622 738 1.953559 TGAGACCTGACTGTTTGTGC 58.046 50.000 0.00 0.00 0.00 4.57
629 745 1.651132 GACTGTTTGTGCACGCGTG 60.651 57.895 34.01 34.01 0.00 5.34
630 746 2.031044 GACTGTTTGTGCACGCGTGA 62.031 55.000 41.19 23.48 0.00 4.35
818 969 3.495100 CCCCAAATCTCTCGACCCATAAG 60.495 52.174 0.00 0.00 0.00 1.73
828 979 0.034089 GACCCATAAGCAAGCACCCT 60.034 55.000 0.00 0.00 0.00 4.34
947 1106 4.527944 GGAAGGATCCGGAAAAGATCTTT 58.472 43.478 15.11 15.11 41.26 2.52
1076 1235 1.118838 CTCCGCCTCTTTCCATCTCT 58.881 55.000 0.00 0.00 0.00 3.10
1145 1304 0.391927 TTCGCCCGATTTCCGTTGAT 60.392 50.000 0.00 0.00 36.31 2.57
1148 1312 1.531058 CGCCCGATTTCCGTTGATTTC 60.531 52.381 0.00 0.00 36.31 2.17
1156 1320 5.445142 CGATTTCCGTTGATTTCTGACTCTG 60.445 44.000 0.00 0.00 0.00 3.35
1157 1321 2.688507 TCCGTTGATTTCTGACTCTGC 58.311 47.619 0.00 0.00 0.00 4.26
1390 1561 1.572447 CGTTCGTTGCGGTTGGATT 59.428 52.632 0.00 0.00 0.00 3.01
1425 1596 3.764885 GGAAACGGAATTGATGTCCTG 57.235 47.619 0.00 0.00 32.53 3.86
1461 1640 1.800586 CTCTGTCGGTGATGTTTGGTG 59.199 52.381 0.00 0.00 0.00 4.17
1469 1648 2.423538 GGTGATGTTTGGTGGTATCAGC 59.576 50.000 0.00 0.00 39.76 4.26
1638 1817 4.436998 GTCGTCCAGGAGCCCGTG 62.437 72.222 0.00 0.00 0.00 4.94
1654 1839 1.695893 CGTGCCCGTACAGCAATCTG 61.696 60.000 9.01 0.00 43.02 2.90
1773 1962 7.306399 CCTTTCCTTGCGTACGTACAATAATAG 60.306 40.741 24.50 11.91 0.00 1.73
1774 1963 6.135290 TCCTTGCGTACGTACAATAATAGT 57.865 37.500 24.50 0.00 0.00 2.12
1775 1964 7.258022 TCCTTGCGTACGTACAATAATAGTA 57.742 36.000 24.50 4.07 0.00 1.82
1776 1965 7.874940 TCCTTGCGTACGTACAATAATAGTAT 58.125 34.615 24.50 0.00 0.00 2.12
1814 2003 1.807142 GACTTTGCTCTGGTGTAAGCC 59.193 52.381 0.00 0.00 37.73 4.35
1879 2069 3.402628 ACCTCACAAATACAGAACGCT 57.597 42.857 0.00 0.00 0.00 5.07
1948 2138 7.913674 ACATCTCTTCTTACTCATTTGGAAC 57.086 36.000 0.00 0.00 0.00 3.62
1949 2139 7.684529 ACATCTCTTCTTACTCATTTGGAACT 58.315 34.615 0.00 0.00 0.00 3.01
1951 2141 9.658799 CATCTCTTCTTACTCATTTGGAACTTA 57.341 33.333 0.00 0.00 0.00 2.24
1957 2147 9.744468 TTCTTACTCATTTGGAACTTAAAAAGC 57.256 29.630 0.00 0.00 0.00 3.51
1958 2148 9.131791 TCTTACTCATTTGGAACTTAAAAAGCT 57.868 29.630 0.00 0.00 0.00 3.74
2048 2241 6.594788 TGATTAAGCAGAAAAGAATTGCCT 57.405 33.333 0.00 0.00 38.58 4.75
2086 2279 6.817765 AAACATGACGAACAAATAGTCCAT 57.182 33.333 0.00 0.00 34.24 3.41
2088 2281 6.903883 ACATGACGAACAAATAGTCCATAC 57.096 37.500 0.00 0.00 34.24 2.39
2089 2282 6.403049 ACATGACGAACAAATAGTCCATACA 58.597 36.000 0.00 0.00 34.24 2.29
2090 2283 6.312918 ACATGACGAACAAATAGTCCATACAC 59.687 38.462 0.00 0.00 34.24 2.90
2091 2284 5.785243 TGACGAACAAATAGTCCATACACA 58.215 37.500 0.00 0.00 34.24 3.72
2092 2285 5.867174 TGACGAACAAATAGTCCATACACAG 59.133 40.000 0.00 0.00 34.24 3.66
2093 2286 6.032956 ACGAACAAATAGTCCATACACAGA 57.967 37.500 0.00 0.00 0.00 3.41
2094 2287 5.867716 ACGAACAAATAGTCCATACACAGAC 59.132 40.000 0.00 0.00 0.00 3.51
2095 2288 6.100004 CGAACAAATAGTCCATACACAGACT 58.900 40.000 0.00 0.00 45.20 3.24
2096 2289 7.094075 ACGAACAAATAGTCCATACACAGACTA 60.094 37.037 2.63 2.63 46.61 2.59
2097 2290 7.220300 CGAACAAATAGTCCATACACAGACTAC 59.780 40.741 2.20 0.00 45.69 2.73
2098 2291 7.719871 ACAAATAGTCCATACACAGACTACT 57.280 36.000 2.20 0.00 45.69 2.57
2099 2292 7.773149 ACAAATAGTCCATACACAGACTACTC 58.227 38.462 2.20 0.00 45.69 2.59
2116 2309 4.765339 ACTACTCACAAAGCATAAAACCCC 59.235 41.667 0.00 0.00 0.00 4.95
2182 2379 1.276622 ACCCACCACACCTCTACATC 58.723 55.000 0.00 0.00 0.00 3.06
2197 2394 2.009681 ACATCACAAAGGAAACCCCC 57.990 50.000 0.00 0.00 34.66 5.40
2202 2404 1.834263 CACAAAGGAAACCCCCAACAA 59.166 47.619 0.00 0.00 34.66 2.83
2203 2405 2.115427 ACAAAGGAAACCCCCAACAAG 58.885 47.619 0.00 0.00 34.66 3.16
2208 2410 2.158460 AGGAAACCCCCAACAAGAAGAG 60.158 50.000 0.00 0.00 34.66 2.85
2217 2419 4.392940 CCCAACAAGAAGAGTGAAGACAT 58.607 43.478 0.00 0.00 0.00 3.06
2226 2428 0.608640 AGTGAAGACATCGGACACCC 59.391 55.000 0.00 0.00 32.76 4.61
2268 2474 4.712051 AATGGAGATAACTATGGCTGCA 57.288 40.909 0.50 0.00 33.31 4.41
2420 2636 7.057894 GGGACAGGTTACAAATATACATCCAA 58.942 38.462 0.00 0.00 0.00 3.53
2601 2817 1.065126 TCTGATGACCTCGAGCTCAGA 60.065 52.381 21.33 21.33 39.87 3.27
2626 2842 0.320374 GGACCGTCACAATGTCTCCA 59.680 55.000 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 58 0.033504 GGACTGCGAGTGGAAAGTGA 59.966 55.000 0.00 0.00 0.00 3.41
110 115 1.670087 CGTTAGATATGGGCAGCTCCG 60.670 57.143 0.00 0.00 34.94 4.63
117 122 0.389948 CTCCGGCGTTAGATATGGGC 60.390 60.000 6.01 0.00 0.00 5.36
230 244 2.318908 CTCATCCTCCTTCTCCTCCAG 58.681 57.143 0.00 0.00 0.00 3.86
269 331 1.766059 CCCCCACATCATCCTCCGA 60.766 63.158 0.00 0.00 0.00 4.55
277 339 2.063979 CCTAGCGTCCCCCACATCA 61.064 63.158 0.00 0.00 0.00 3.07
293 355 3.141488 CTGCTACTCCGCGTCCCT 61.141 66.667 4.92 0.00 0.00 4.20
304 366 1.273886 GGAATCGAGGATCCCTGCTAC 59.726 57.143 8.55 0.00 31.76 3.58
306 368 1.124477 GGGAATCGAGGATCCCTGCT 61.124 60.000 20.85 0.00 39.27 4.24
326 401 3.712907 CATCCAACCCCGACCGGT 61.713 66.667 6.92 6.92 37.93 5.28
335 410 4.424711 TGGCCTCCGCATCCAACC 62.425 66.667 3.32 0.00 36.38 3.77
408 483 4.604156 TCTCCTCATCCATATATGCGAGT 58.396 43.478 7.24 0.00 30.80 4.18
582 698 6.031751 TCAAATTTACCCTTTTTCATCCGG 57.968 37.500 0.00 0.00 0.00 5.14
589 705 6.839134 AGTCAGGTCTCAAATTTACCCTTTTT 59.161 34.615 5.20 0.00 33.53 1.94
595 711 6.039382 ACAAACAGTCAGGTCTCAAATTTACC 59.961 38.462 0.97 0.97 0.00 2.85
597 713 6.459573 GCACAAACAGTCAGGTCTCAAATTTA 60.460 38.462 0.00 0.00 0.00 1.40
604 720 1.599542 GTGCACAAACAGTCAGGTCTC 59.400 52.381 13.17 0.00 0.00 3.36
606 722 0.304705 CGTGCACAAACAGTCAGGTC 59.695 55.000 18.64 0.00 0.00 3.85
614 730 1.010238 CATCACGCGTGCACAAACA 60.010 52.632 33.63 15.71 0.00 2.83
616 732 2.636462 CCATCACGCGTGCACAAA 59.364 55.556 33.63 17.29 0.00 2.83
635 752 3.484547 GGCGGTCGGCAACTTACG 61.485 66.667 11.98 0.00 46.16 3.18
743 860 1.568612 CTGTGCCGTGTGCCTAGTTG 61.569 60.000 0.00 0.00 40.16 3.16
818 969 0.027586 CGCGTAATAAGGGTGCTTGC 59.972 55.000 0.00 0.00 0.00 4.01
828 979 0.108233 AAACCGGGAGCGCGTAATAA 60.108 50.000 8.43 0.00 0.00 1.40
936 1095 0.098905 GCGCCCCGAAAGATCTTTTC 59.901 55.000 21.33 13.24 32.11 2.29
1018 1177 3.010420 GAGTTCCAAGTACCATGAAGCC 58.990 50.000 0.00 0.00 0.00 4.35
1145 1304 1.664649 CACCGCGCAGAGTCAGAAA 60.665 57.895 8.75 0.00 0.00 2.52
1216 1386 0.312416 CATCCTCGTCGTCATCCTCC 59.688 60.000 0.00 0.00 0.00 4.30
1217 1387 1.002251 GACATCCTCGTCGTCATCCTC 60.002 57.143 0.00 0.00 0.00 3.71
1218 1388 1.025812 GACATCCTCGTCGTCATCCT 58.974 55.000 0.00 0.00 0.00 3.24
1250 1420 4.052229 CTCCACCTCGTCGCCGTT 62.052 66.667 0.00 0.00 35.01 4.44
1365 1535 2.351774 CGCAACGAACGCAAGCAA 60.352 55.556 0.00 0.00 45.62 3.91
1366 1536 4.306471 CCGCAACGAACGCAAGCA 62.306 61.111 0.00 0.00 45.62 3.91
1367 1537 3.800323 AACCGCAACGAACGCAAGC 62.800 57.895 0.00 0.00 45.62 4.01
1369 1539 2.023461 CAACCGCAACGAACGCAA 59.977 55.556 0.00 0.00 0.00 4.85
1390 1561 3.556775 CCGTTTCCGACTTTACAAGTTCA 59.443 43.478 0.00 0.00 43.03 3.18
1402 1573 2.095372 GGACATCAATTCCGTTTCCGAC 59.905 50.000 0.00 0.00 35.63 4.79
1425 1596 2.171448 ACAGAGAGAGAGAGAGAGAGGC 59.829 54.545 0.00 0.00 0.00 4.70
1461 1640 2.728817 CCCCGTCGAGCTGATACC 59.271 66.667 0.00 0.00 0.00 2.73
1469 1648 4.796231 CTTCACCGCCCCGTCGAG 62.796 72.222 0.00 0.00 0.00 4.04
1635 1814 1.695893 CAGATTGCTGTACGGGCACG 61.696 60.000 6.92 6.92 39.55 5.34
1636 1815 1.982073 GCAGATTGCTGTACGGGCAC 61.982 60.000 11.93 3.70 44.17 5.01
1637 1816 1.745115 GCAGATTGCTGTACGGGCA 60.745 57.895 3.34 6.53 44.17 5.36
1638 1817 3.102097 GCAGATTGCTGTACGGGC 58.898 61.111 3.34 3.73 44.17 6.13
1654 1839 1.673665 CTGCTGGAACACCTGGAGC 60.674 63.158 0.00 0.00 35.32 4.70
1707 1895 2.325082 CGGCCTGTACTGTGGTTGC 61.325 63.158 0.00 0.00 0.00 4.17
1773 1962 9.448294 AAAGTCGTAAAGAACAGATCGATATAC 57.552 33.333 0.00 0.00 0.00 1.47
1774 1963 9.447040 CAAAGTCGTAAAGAACAGATCGATATA 57.553 33.333 0.00 0.00 0.00 0.86
1775 1964 7.043325 GCAAAGTCGTAAAGAACAGATCGATAT 60.043 37.037 0.00 0.00 0.00 1.63
1776 1965 6.252869 GCAAAGTCGTAAAGAACAGATCGATA 59.747 38.462 0.00 0.00 0.00 2.92
1814 2003 3.690460 ACAAAAACTGCTATCTCCTGGG 58.310 45.455 0.00 0.00 0.00 4.45
1879 2069 7.962441 TCCCAAAATCAGACTCGATGATAATA 58.038 34.615 0.59 0.00 36.38 0.98
2073 2266 8.135382 AGTAGTCTGTGTATGGACTATTTGTT 57.865 34.615 6.18 0.00 43.81 2.83
2083 2276 4.627467 GCTTTGTGAGTAGTCTGTGTATGG 59.373 45.833 0.00 0.00 0.00 2.74
2086 2279 4.929819 TGCTTTGTGAGTAGTCTGTGTA 57.070 40.909 0.00 0.00 0.00 2.90
2088 2281 6.785488 TTTATGCTTTGTGAGTAGTCTGTG 57.215 37.500 0.00 0.00 0.00 3.66
2089 2282 6.204882 GGTTTTATGCTTTGTGAGTAGTCTGT 59.795 38.462 0.00 0.00 0.00 3.41
2090 2283 6.348540 GGGTTTTATGCTTTGTGAGTAGTCTG 60.349 42.308 0.00 0.00 0.00 3.51
2091 2284 5.705905 GGGTTTTATGCTTTGTGAGTAGTCT 59.294 40.000 0.00 0.00 0.00 3.24
2092 2285 5.106277 GGGGTTTTATGCTTTGTGAGTAGTC 60.106 44.000 0.00 0.00 0.00 2.59
2093 2286 4.765339 GGGGTTTTATGCTTTGTGAGTAGT 59.235 41.667 0.00 0.00 0.00 2.73
2094 2287 4.764823 TGGGGTTTTATGCTTTGTGAGTAG 59.235 41.667 0.00 0.00 0.00 2.57
2095 2288 4.730966 TGGGGTTTTATGCTTTGTGAGTA 58.269 39.130 0.00 0.00 0.00 2.59
2096 2289 3.571590 TGGGGTTTTATGCTTTGTGAGT 58.428 40.909 0.00 0.00 0.00 3.41
2097 2290 4.220382 TCATGGGGTTTTATGCTTTGTGAG 59.780 41.667 0.00 0.00 0.00 3.51
2098 2291 4.021544 GTCATGGGGTTTTATGCTTTGTGA 60.022 41.667 0.00 0.00 0.00 3.58
2099 2292 4.244862 GTCATGGGGTTTTATGCTTTGTG 58.755 43.478 0.00 0.00 0.00 3.33
2116 2309 2.677003 GGTTGACGGTGCGGTCATG 61.677 63.158 12.21 0.00 45.62 3.07
2182 2379 1.490574 TGTTGGGGGTTTCCTTTGTG 58.509 50.000 0.00 0.00 35.33 3.33
2197 2394 4.151335 CCGATGTCTTCACTCTTCTTGTTG 59.849 45.833 0.00 0.00 0.00 3.33
2202 2404 3.057174 GTGTCCGATGTCTTCACTCTTCT 60.057 47.826 0.00 0.00 0.00 2.85
2203 2405 3.246619 GTGTCCGATGTCTTCACTCTTC 58.753 50.000 0.00 0.00 0.00 2.87
2208 2410 0.391263 GGGGTGTCCGATGTCTTCAC 60.391 60.000 0.00 0.00 0.00 3.18
2217 2419 1.211567 ATGGATTTGGGGGTGTCCGA 61.212 55.000 0.00 0.00 36.01 4.55
2226 2428 8.166061 TCCATTATTCTCTTCTATGGATTTGGG 58.834 37.037 0.00 0.00 39.73 4.12
2259 2465 3.193267 GGAAATGTTTGTCTGCAGCCATA 59.807 43.478 9.47 0.00 0.00 2.74
2345 2557 6.636447 TGTCGTTGCTTTCTCAATAAAACATG 59.364 34.615 0.00 0.00 0.00 3.21
2362 2578 3.392769 TGTTGTAACAAGTGTCGTTGC 57.607 42.857 0.00 0.00 35.67 4.17
2420 2636 1.898574 CCAAACTGGCGGCTTGAGT 60.899 57.895 11.43 1.96 0.00 3.41
2626 2842 0.606401 CACTTGGGTCGTCAGGCAAT 60.606 55.000 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.