Multiple sequence alignment - TraesCS7D01G166900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G166900 chr7D 100.000 2222 0 0 1 2222 117522144 117524365 0.000000e+00 4104
1 TraesCS7D01G166900 chr7A 93.822 696 31 8 812 1496 121912808 121913502 0.000000e+00 1037
2 TraesCS7D01G166900 chr7A 84.488 361 28 8 1674 2011 121921803 121922158 4.570000e-87 331
3 TraesCS7D01G166900 chr7A 85.859 297 27 5 116 399 121902660 121902954 3.590000e-78 302
4 TraesCS7D01G166900 chr7A 91.908 173 9 3 2052 2222 121922162 121922331 1.030000e-58 237
5 TraesCS7D01G166900 chr7B 86.490 681 55 20 1577 2222 78064692 78065370 0.000000e+00 713
6 TraesCS7D01G166900 chr7B 89.720 428 26 13 917 1332 78062972 78063393 4.200000e-147 531
7 TraesCS7D01G166900 chr7B 90.541 148 12 2 210 357 78062173 78062318 6.260000e-46 195


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G166900 chr7D 117522144 117524365 2221 False 4104.000000 4104 100.000 1 2222 1 chr7D.!!$F1 2221
1 TraesCS7D01G166900 chr7A 121912808 121913502 694 False 1037.000000 1037 93.822 812 1496 1 chr7A.!!$F2 684
2 TraesCS7D01G166900 chr7A 121921803 121922331 528 False 284.000000 331 88.198 1674 2222 2 chr7A.!!$F3 548
3 TraesCS7D01G166900 chr7B 78062173 78065370 3197 False 479.666667 713 88.917 210 2222 3 chr7B.!!$F1 2012

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
153 154 0.036858 GCACTTCTGACTGGGGAGAC 60.037 60.0 0.0 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1649 2930 0.73315 GTGGAAGGAAGTATTGCGCC 59.267 55.0 4.18 0.0 43.33 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.194005 TCCGAATCAGACTTTATGGGC 57.806 47.619 0.00 0.00 0.00 5.36
21 22 2.771943 TCCGAATCAGACTTTATGGGCT 59.228 45.455 0.00 0.00 0.00 5.19
22 23 3.199946 TCCGAATCAGACTTTATGGGCTT 59.800 43.478 0.00 0.00 0.00 4.35
23 24 3.561725 CCGAATCAGACTTTATGGGCTTC 59.438 47.826 0.00 0.00 0.00 3.86
24 25 4.191544 CGAATCAGACTTTATGGGCTTCA 58.808 43.478 0.00 0.00 0.00 3.02
25 26 4.635765 CGAATCAGACTTTATGGGCTTCAA 59.364 41.667 0.00 0.00 0.00 2.69
26 27 5.123820 CGAATCAGACTTTATGGGCTTCAAA 59.876 40.000 0.00 0.00 0.00 2.69
27 28 6.183360 CGAATCAGACTTTATGGGCTTCAAAT 60.183 38.462 0.00 0.00 0.00 2.32
28 29 6.705863 ATCAGACTTTATGGGCTTCAAATC 57.294 37.500 0.00 0.00 0.00 2.17
29 30 4.949856 TCAGACTTTATGGGCTTCAAATCC 59.050 41.667 0.00 0.00 0.00 3.01
30 31 4.706476 CAGACTTTATGGGCTTCAAATCCA 59.294 41.667 0.00 0.00 34.79 3.41
31 32 5.185635 CAGACTTTATGGGCTTCAAATCCAA 59.814 40.000 0.00 0.00 33.90 3.53
32 33 5.185828 AGACTTTATGGGCTTCAAATCCAAC 59.814 40.000 0.00 0.00 33.90 3.77
33 34 4.222810 ACTTTATGGGCTTCAAATCCAACC 59.777 41.667 0.00 0.00 33.90 3.77
34 35 1.571955 ATGGGCTTCAAATCCAACCC 58.428 50.000 0.00 0.00 37.88 4.11
35 36 0.897863 TGGGCTTCAAATCCAACCCG 60.898 55.000 0.00 0.00 40.41 5.28
36 37 1.604147 GGGCTTCAAATCCAACCCGG 61.604 60.000 0.00 0.00 0.00 5.73
37 38 0.898326 GGCTTCAAATCCAACCCGGT 60.898 55.000 0.00 0.00 35.57 5.28
38 39 0.243636 GCTTCAAATCCAACCCGGTG 59.756 55.000 0.00 0.00 35.57 4.94
39 40 0.243636 CTTCAAATCCAACCCGGTGC 59.756 55.000 0.00 0.00 35.57 5.01
40 41 1.519751 TTCAAATCCAACCCGGTGCG 61.520 55.000 0.00 0.00 35.57 5.34
41 42 1.969064 CAAATCCAACCCGGTGCGA 60.969 57.895 0.00 0.00 35.57 5.10
42 43 1.228306 AAATCCAACCCGGTGCGAA 60.228 52.632 0.00 0.00 35.57 4.70
43 44 0.610785 AAATCCAACCCGGTGCGAAT 60.611 50.000 0.00 0.00 35.57 3.34
44 45 0.610785 AATCCAACCCGGTGCGAATT 60.611 50.000 0.00 0.00 35.57 2.17
45 46 1.312371 ATCCAACCCGGTGCGAATTG 61.312 55.000 0.00 0.00 35.57 2.32
46 47 2.566010 CAACCCGGTGCGAATTGG 59.434 61.111 0.00 0.00 0.00 3.16
47 48 1.969064 CAACCCGGTGCGAATTGGA 60.969 57.895 0.00 0.00 0.00 3.53
48 49 1.674322 AACCCGGTGCGAATTGGAG 60.674 57.895 0.00 0.00 0.00 3.86
49 50 2.046314 CCCGGTGCGAATTGGAGT 60.046 61.111 0.00 0.00 0.00 3.85
50 51 1.674322 CCCGGTGCGAATTGGAGTT 60.674 57.895 0.00 0.00 0.00 3.01
51 52 1.644786 CCCGGTGCGAATTGGAGTTC 61.645 60.000 0.00 0.00 0.00 3.01
57 58 2.539003 CGAATTGGAGTTCGTGGCA 58.461 52.632 1.22 0.00 44.32 4.92
58 59 0.165944 CGAATTGGAGTTCGTGGCAC 59.834 55.000 7.79 7.79 44.32 5.01
59 60 1.234821 GAATTGGAGTTCGTGGCACA 58.765 50.000 19.09 1.83 0.00 4.57
74 75 4.462508 TGGCACACATTTTGTTCAAAGA 57.537 36.364 0.00 0.00 35.67 2.52
75 76 4.180057 TGGCACACATTTTGTTCAAAGAC 58.820 39.130 0.00 0.00 35.67 3.01
76 77 3.242712 GGCACACATTTTGTTCAAAGACG 59.757 43.478 0.00 0.00 35.67 4.18
77 78 4.101942 GCACACATTTTGTTCAAAGACGA 58.898 39.130 0.00 0.00 35.67 4.20
78 79 4.739716 GCACACATTTTGTTCAAAGACGAT 59.260 37.500 0.00 0.00 35.67 3.73
79 80 5.231991 GCACACATTTTGTTCAAAGACGATT 59.768 36.000 0.00 0.00 35.67 3.34
80 81 6.237808 GCACACATTTTGTTCAAAGACGATTT 60.238 34.615 0.00 0.00 35.67 2.17
81 82 7.329582 CACACATTTTGTTCAAAGACGATTTC 58.670 34.615 0.00 0.00 35.67 2.17
82 83 7.220683 CACACATTTTGTTCAAAGACGATTTCT 59.779 33.333 0.00 0.00 35.67 2.52
83 84 7.432252 ACACATTTTGTTCAAAGACGATTTCTC 59.568 33.333 0.00 0.00 33.09 2.87
84 85 6.918022 ACATTTTGTTCAAAGACGATTTCTCC 59.082 34.615 0.00 0.00 31.02 3.71
85 86 6.443934 TTTTGTTCAAAGACGATTTCTCCA 57.556 33.333 0.00 0.00 31.02 3.86
86 87 6.633500 TTTGTTCAAAGACGATTTCTCCAT 57.367 33.333 0.00 0.00 31.02 3.41
87 88 6.633500 TTGTTCAAAGACGATTTCTCCATT 57.367 33.333 0.00 0.00 31.02 3.16
88 89 7.737972 TTGTTCAAAGACGATTTCTCCATTA 57.262 32.000 0.00 0.00 31.02 1.90
89 90 7.364522 TGTTCAAAGACGATTTCTCCATTAG 57.635 36.000 0.00 0.00 31.02 1.73
90 91 7.158697 TGTTCAAAGACGATTTCTCCATTAGA 58.841 34.615 0.00 0.00 31.02 2.10
91 92 7.331934 TGTTCAAAGACGATTTCTCCATTAGAG 59.668 37.037 0.00 0.00 44.75 2.43
92 93 6.936279 TCAAAGACGATTTCTCCATTAGAGT 58.064 36.000 0.00 0.00 43.71 3.24
93 94 7.386851 TCAAAGACGATTTCTCCATTAGAGTT 58.613 34.615 0.00 0.00 43.71 3.01
94 95 7.878127 TCAAAGACGATTTCTCCATTAGAGTTT 59.122 33.333 0.00 0.00 43.71 2.66
95 96 7.602517 AAGACGATTTCTCCATTAGAGTTTG 57.397 36.000 0.00 0.00 43.71 2.93
96 97 6.109359 AGACGATTTCTCCATTAGAGTTTGG 58.891 40.000 0.00 0.00 43.71 3.28
97 98 6.049955 ACGATTTCTCCATTAGAGTTTGGA 57.950 37.500 0.00 0.00 43.71 3.53
98 99 6.472887 ACGATTTCTCCATTAGAGTTTGGAA 58.527 36.000 0.00 0.00 41.36 3.53
99 100 7.112779 ACGATTTCTCCATTAGAGTTTGGAAT 58.887 34.615 0.00 0.00 41.36 3.01
100 101 7.066284 ACGATTTCTCCATTAGAGTTTGGAATG 59.934 37.037 0.00 0.00 41.36 2.67
101 102 7.066284 CGATTTCTCCATTAGAGTTTGGAATGT 59.934 37.037 0.00 0.00 41.36 2.71
102 103 9.396022 GATTTCTCCATTAGAGTTTGGAATGTA 57.604 33.333 0.00 0.00 41.36 2.29
103 104 8.792830 TTTCTCCATTAGAGTTTGGAATGTAG 57.207 34.615 0.00 0.00 41.36 2.74
104 105 7.496346 TCTCCATTAGAGTTTGGAATGTAGT 57.504 36.000 0.00 0.00 41.36 2.73
105 106 7.918076 TCTCCATTAGAGTTTGGAATGTAGTT 58.082 34.615 0.00 0.00 41.36 2.24
106 107 9.042450 TCTCCATTAGAGTTTGGAATGTAGTTA 57.958 33.333 0.00 0.00 41.36 2.24
107 108 9.667107 CTCCATTAGAGTTTGGAATGTAGTTAA 57.333 33.333 0.00 0.00 41.36 2.01
108 109 9.667107 TCCATTAGAGTTTGGAATGTAGTTAAG 57.333 33.333 0.00 0.00 39.05 1.85
109 110 8.398665 CCATTAGAGTTTGGAATGTAGTTAAGC 58.601 37.037 0.00 0.00 34.81 3.09
110 111 7.916914 TTAGAGTTTGGAATGTAGTTAAGCC 57.083 36.000 0.00 0.00 0.00 4.35
111 112 5.254115 AGAGTTTGGAATGTAGTTAAGCCC 58.746 41.667 0.00 0.00 0.00 5.19
112 113 5.014228 AGAGTTTGGAATGTAGTTAAGCCCT 59.986 40.000 0.00 0.00 0.00 5.19
113 114 5.010282 AGTTTGGAATGTAGTTAAGCCCTG 58.990 41.667 0.00 0.00 0.00 4.45
114 115 3.644966 TGGAATGTAGTTAAGCCCTGG 57.355 47.619 0.00 0.00 0.00 4.45
115 116 2.241176 TGGAATGTAGTTAAGCCCTGGG 59.759 50.000 8.86 8.86 0.00 4.45
116 117 2.241430 GGAATGTAGTTAAGCCCTGGGT 59.759 50.000 15.56 0.00 0.00 4.51
117 118 3.308904 GGAATGTAGTTAAGCCCTGGGTT 60.309 47.826 15.56 5.13 39.33 4.11
118 119 2.871096 TGTAGTTAAGCCCTGGGTTG 57.129 50.000 15.56 0.00 37.08 3.77
119 120 2.340731 TGTAGTTAAGCCCTGGGTTGA 58.659 47.619 15.56 0.00 37.08 3.18
120 121 2.039348 TGTAGTTAAGCCCTGGGTTGAC 59.961 50.000 15.56 13.37 40.72 3.18
121 122 1.145571 AGTTAAGCCCTGGGTTGACA 58.854 50.000 20.62 0.00 42.14 3.58
122 123 1.202891 AGTTAAGCCCTGGGTTGACAC 60.203 52.381 20.62 6.29 42.14 3.67
123 124 0.250553 TTAAGCCCTGGGTTGACACG 60.251 55.000 15.56 0.00 37.08 4.49
124 125 2.741486 TAAGCCCTGGGTTGACACGC 62.741 60.000 15.56 0.00 37.08 5.34
128 129 4.308458 CTGGGTTGACACGCCGGA 62.308 66.667 5.05 0.00 34.90 5.14
129 130 4.308458 TGGGTTGACACGCCGGAG 62.308 66.667 5.05 3.72 34.90 4.63
130 131 4.309950 GGGTTGACACGCCGGAGT 62.310 66.667 5.05 4.71 0.00 3.85
131 132 2.280592 GGTTGACACGCCGGAGTT 60.281 61.111 8.62 0.00 0.00 3.01
132 133 2.604174 GGTTGACACGCCGGAGTTG 61.604 63.158 8.62 7.17 0.00 3.16
133 134 1.593209 GTTGACACGCCGGAGTTGA 60.593 57.895 8.62 0.00 0.00 3.18
134 135 1.300620 TTGACACGCCGGAGTTGAG 60.301 57.895 8.62 0.00 0.00 3.02
135 136 3.112709 GACACGCCGGAGTTGAGC 61.113 66.667 8.62 0.00 0.00 4.26
136 137 3.858868 GACACGCCGGAGTTGAGCA 62.859 63.158 8.62 0.00 0.00 4.26
137 138 3.414700 CACGCCGGAGTTGAGCAC 61.415 66.667 8.62 0.00 0.00 4.40
138 139 3.616721 ACGCCGGAGTTGAGCACT 61.617 61.111 5.05 0.00 39.07 4.40
139 140 2.357517 CGCCGGAGTTGAGCACTT 60.358 61.111 5.05 0.00 35.01 3.16
140 141 2.383527 CGCCGGAGTTGAGCACTTC 61.384 63.158 5.05 0.00 35.01 3.01
141 142 1.004440 GCCGGAGTTGAGCACTTCT 60.004 57.895 5.05 0.00 35.01 2.85
142 143 1.294659 GCCGGAGTTGAGCACTTCTG 61.295 60.000 5.05 0.00 35.01 3.02
143 144 0.318441 CCGGAGTTGAGCACTTCTGA 59.682 55.000 0.00 0.00 35.01 3.27
144 145 1.423395 CGGAGTTGAGCACTTCTGAC 58.577 55.000 0.00 0.00 35.01 3.51
145 146 1.000283 CGGAGTTGAGCACTTCTGACT 60.000 52.381 0.00 0.00 35.01 3.41
146 147 2.411904 GGAGTTGAGCACTTCTGACTG 58.588 52.381 0.00 0.00 35.01 3.51
147 148 2.411904 GAGTTGAGCACTTCTGACTGG 58.588 52.381 0.00 0.00 35.01 4.00
148 149 1.071385 AGTTGAGCACTTCTGACTGGG 59.929 52.381 0.00 0.00 27.32 4.45
149 150 0.397941 TTGAGCACTTCTGACTGGGG 59.602 55.000 0.00 0.00 0.00 4.96
150 151 0.471780 TGAGCACTTCTGACTGGGGA 60.472 55.000 0.00 0.00 0.00 4.81
151 152 0.248843 GAGCACTTCTGACTGGGGAG 59.751 60.000 0.00 0.00 0.00 4.30
152 153 0.178921 AGCACTTCTGACTGGGGAGA 60.179 55.000 0.00 0.00 0.00 3.71
153 154 0.036858 GCACTTCTGACTGGGGAGAC 60.037 60.000 0.00 0.00 0.00 3.36
165 166 2.266055 GGAGACCTCCGTGCTTGG 59.734 66.667 0.00 0.00 40.36 3.61
166 167 2.584391 GGAGACCTCCGTGCTTGGT 61.584 63.158 0.00 0.00 40.36 3.67
167 168 1.374758 GAGACCTCCGTGCTTGGTG 60.375 63.158 0.00 0.00 33.74 4.17
168 169 2.358737 GACCTCCGTGCTTGGTGG 60.359 66.667 12.52 12.52 46.06 4.61
169 170 3.901797 GACCTCCGTGCTTGGTGGG 62.902 68.421 16.74 11.92 45.12 4.61
171 172 4.641645 CTCCGTGCTTGGTGGGCA 62.642 66.667 0.00 0.00 37.36 5.36
172 173 4.196778 TCCGTGCTTGGTGGGCAA 62.197 61.111 0.00 0.00 41.54 4.52
173 174 3.977244 CCGTGCTTGGTGGGCAAC 61.977 66.667 0.00 0.00 41.54 4.17
189 190 2.084610 CAACCATGCTTCTCAGTCGA 57.915 50.000 0.00 0.00 0.00 4.20
190 191 1.998315 CAACCATGCTTCTCAGTCGAG 59.002 52.381 0.00 0.00 40.98 4.04
191 192 0.534412 ACCATGCTTCTCAGTCGAGG 59.466 55.000 0.00 0.00 39.95 4.63
192 193 0.820226 CCATGCTTCTCAGTCGAGGA 59.180 55.000 0.00 0.00 39.95 3.71
193 194 1.470632 CCATGCTTCTCAGTCGAGGAC 60.471 57.143 0.00 0.00 39.95 3.85
194 195 1.203287 CATGCTTCTCAGTCGAGGACA 59.797 52.381 0.00 0.00 39.95 4.02
195 196 0.598562 TGCTTCTCAGTCGAGGACAC 59.401 55.000 0.00 0.00 39.95 3.67
196 197 0.598562 GCTTCTCAGTCGAGGACACA 59.401 55.000 0.00 0.00 39.95 3.72
197 198 1.402194 GCTTCTCAGTCGAGGACACAG 60.402 57.143 0.00 0.00 39.95 3.66
198 199 1.201181 CTTCTCAGTCGAGGACACAGG 59.799 57.143 0.00 0.00 39.95 4.00
199 200 0.400594 TCTCAGTCGAGGACACAGGA 59.599 55.000 0.00 0.00 39.95 3.86
200 201 1.202891 TCTCAGTCGAGGACACAGGAA 60.203 52.381 0.00 0.00 39.95 3.36
201 202 1.613925 CTCAGTCGAGGACACAGGAAA 59.386 52.381 0.00 0.00 35.44 3.13
202 203 1.613925 TCAGTCGAGGACACAGGAAAG 59.386 52.381 0.00 0.00 34.60 2.62
203 204 0.969894 AGTCGAGGACACAGGAAAGG 59.030 55.000 0.00 0.00 34.60 3.11
204 205 0.966920 GTCGAGGACACAGGAAAGGA 59.033 55.000 0.00 0.00 32.09 3.36
205 206 1.343465 GTCGAGGACACAGGAAAGGAA 59.657 52.381 0.00 0.00 32.09 3.36
206 207 2.043992 TCGAGGACACAGGAAAGGAAA 58.956 47.619 0.00 0.00 0.00 3.13
207 208 2.037251 TCGAGGACACAGGAAAGGAAAG 59.963 50.000 0.00 0.00 0.00 2.62
208 209 2.155279 GAGGACACAGGAAAGGAAAGC 58.845 52.381 0.00 0.00 0.00 3.51
209 210 1.494721 AGGACACAGGAAAGGAAAGCA 59.505 47.619 0.00 0.00 0.00 3.91
210 211 2.091885 AGGACACAGGAAAGGAAAGCAA 60.092 45.455 0.00 0.00 0.00 3.91
211 212 2.893489 GGACACAGGAAAGGAAAGCAAT 59.107 45.455 0.00 0.00 0.00 3.56
212 213 3.305608 GGACACAGGAAAGGAAAGCAATG 60.306 47.826 0.00 0.00 0.00 2.82
213 214 2.629617 ACACAGGAAAGGAAAGCAATGG 59.370 45.455 0.00 0.00 0.00 3.16
214 215 2.629617 CACAGGAAAGGAAAGCAATGGT 59.370 45.455 0.00 0.00 0.00 3.55
215 216 2.893489 ACAGGAAAGGAAAGCAATGGTC 59.107 45.455 0.00 0.00 0.00 4.02
216 217 3.160269 CAGGAAAGGAAAGCAATGGTCT 58.840 45.455 0.00 0.00 0.00 3.85
217 218 3.575687 CAGGAAAGGAAAGCAATGGTCTT 59.424 43.478 0.00 0.00 0.00 3.01
218 219 3.575687 AGGAAAGGAAAGCAATGGTCTTG 59.424 43.478 0.00 0.00 0.00 3.02
245 246 1.207593 GCTCGTTGCATGCGAACTT 59.792 52.632 22.12 0.00 42.31 2.66
246 247 0.385974 GCTCGTTGCATGCGAACTTT 60.386 50.000 22.12 0.00 42.31 2.66
247 248 1.925946 GCTCGTTGCATGCGAACTTTT 60.926 47.619 22.12 0.00 42.31 2.27
270 271 1.847798 TAGCCGGTTGCATGGGAACT 61.848 55.000 1.90 0.00 44.83 3.01
272 273 1.815817 GCCGGTTGCATGGGAACTTT 61.816 55.000 1.90 0.00 40.77 2.66
273 274 0.038343 CCGGTTGCATGGGAACTTTG 60.038 55.000 0.00 0.00 0.00 2.77
337 338 5.220989 CCATCATCTTCGCAAACATCAAGAT 60.221 40.000 0.00 0.00 36.26 2.40
357 358 3.762407 TTGAGGTCAAGAATTCGGTCA 57.238 42.857 0.00 0.00 0.00 4.02
358 359 3.040147 TGAGGTCAAGAATTCGGTCAC 57.960 47.619 0.00 0.00 0.00 3.67
359 360 2.289444 TGAGGTCAAGAATTCGGTCACC 60.289 50.000 0.00 5.43 0.00 4.02
377 378 3.892200 CGGAGGTGCAAAGCATTTT 57.108 47.368 0.00 0.00 41.91 1.82
378 379 1.421382 CGGAGGTGCAAAGCATTTTG 58.579 50.000 0.00 0.00 45.17 2.44
379 380 1.000385 CGGAGGTGCAAAGCATTTTGA 60.000 47.619 2.79 0.00 45.21 2.69
380 381 2.680577 GGAGGTGCAAAGCATTTTGAG 58.319 47.619 2.79 0.00 45.21 3.02
381 382 2.036346 GGAGGTGCAAAGCATTTTGAGT 59.964 45.455 2.79 0.00 45.21 3.41
382 383 3.493176 GGAGGTGCAAAGCATTTTGAGTT 60.493 43.478 2.79 0.00 45.21 3.01
383 384 4.122046 GAGGTGCAAAGCATTTTGAGTTT 58.878 39.130 2.79 0.00 45.21 2.66
384 385 4.516323 AGGTGCAAAGCATTTTGAGTTTT 58.484 34.783 2.79 0.00 45.21 2.43
385 386 5.669477 AGGTGCAAAGCATTTTGAGTTTTA 58.331 33.333 2.79 0.00 45.21 1.52
399 400 8.948853 TTTTGAGTTTTATAATTGTGCGAGAG 57.051 30.769 0.00 0.00 0.00 3.20
400 401 7.899178 TTGAGTTTTATAATTGTGCGAGAGA 57.101 32.000 0.00 0.00 0.00 3.10
414 415 2.349912 GCGAGAGAAGACTTTTTGTGGC 60.350 50.000 0.00 0.00 0.00 5.01
430 431 0.482446 TGGCTCCCATTTGTTGAGGT 59.518 50.000 0.00 0.00 0.00 3.85
433 434 2.554344 GGCTCCCATTTGTTGAGGTGTA 60.554 50.000 0.00 0.00 0.00 2.90
441 442 5.469479 CATTTGTTGAGGTGTAAATGGACC 58.531 41.667 0.00 0.00 37.05 4.46
454 455 1.280457 ATGGACCTCACTGAACCTCC 58.720 55.000 0.00 0.00 0.00 4.30
458 459 1.891150 GACCTCACTGAACCTCCGTTA 59.109 52.381 0.00 0.00 30.30 3.18
470 471 1.207089 CCTCCGTTAATCTCAGTGGCA 59.793 52.381 0.00 0.00 0.00 4.92
477 478 1.242076 AATCTCAGTGGCAAGTGCAC 58.758 50.000 9.40 9.40 44.36 4.57
479 480 1.047801 TCTCAGTGGCAAGTGCACTA 58.952 50.000 22.01 0.19 44.36 2.74
482 483 1.089920 CAGTGGCAAGTGCACTATCC 58.910 55.000 22.01 22.81 44.36 2.59
485 486 0.403655 TGGCAAGTGCACTATCCCAA 59.596 50.000 22.01 6.52 44.36 4.12
490 491 3.428045 GCAAGTGCACTATCCCAATGAAC 60.428 47.826 22.01 0.00 41.59 3.18
492 493 4.032960 AGTGCACTATCCCAATGAACAA 57.967 40.909 20.16 0.00 0.00 2.83
503 504 4.701651 TCCCAATGAACAAGTCTGCATAAG 59.298 41.667 0.00 0.00 0.00 1.73
507 508 6.318144 CCAATGAACAAGTCTGCATAAGAGAT 59.682 38.462 0.00 0.00 34.84 2.75
508 509 7.408123 CAATGAACAAGTCTGCATAAGAGATC 58.592 38.462 0.00 0.00 34.84 2.75
509 510 6.041423 TGAACAAGTCTGCATAAGAGATCA 57.959 37.500 0.00 0.00 34.84 2.92
510 511 6.104665 TGAACAAGTCTGCATAAGAGATCAG 58.895 40.000 0.00 0.00 34.84 2.90
512 513 6.482898 ACAAGTCTGCATAAGAGATCAGAT 57.517 37.500 0.00 0.00 37.81 2.90
514 515 4.885413 AGTCTGCATAAGAGATCAGATGC 58.115 43.478 11.88 11.88 44.00 3.91
531 532 2.260434 CCACTTGGCACATGCAGC 59.740 61.111 6.15 2.28 44.36 5.25
542 543 2.747436 CACATGCAGCGAGCTATCTAA 58.253 47.619 0.00 0.00 45.94 2.10
543 544 2.730404 CACATGCAGCGAGCTATCTAAG 59.270 50.000 0.00 0.00 45.94 2.18
565 614 4.467795 AGAGAGTGCATAAAAGCCACTCTA 59.532 41.667 18.99 0.00 44.84 2.43
578 627 7.827819 AAAGCCACTCTAGAAAAACAAAAAC 57.172 32.000 0.00 0.00 0.00 2.43
579 628 6.524101 AGCCACTCTAGAAAAACAAAAACA 57.476 33.333 0.00 0.00 0.00 2.83
580 629 6.930731 AGCCACTCTAGAAAAACAAAAACAA 58.069 32.000 0.00 0.00 0.00 2.83
581 630 7.382898 AGCCACTCTAGAAAAACAAAAACAAA 58.617 30.769 0.00 0.00 0.00 2.83
582 631 7.875554 AGCCACTCTAGAAAAACAAAAACAAAA 59.124 29.630 0.00 0.00 0.00 2.44
583 632 8.499967 GCCACTCTAGAAAAACAAAAACAAAAA 58.500 29.630 0.00 0.00 0.00 1.94
584 633 9.805966 CCACTCTAGAAAAACAAAAACAAAAAC 57.194 29.630 0.00 0.00 0.00 2.43
643 744 5.134339 TCCTAATTCATCAAGTAATGGGCCT 59.866 40.000 4.53 0.00 0.00 5.19
644 745 5.835280 CCTAATTCATCAAGTAATGGGCCTT 59.165 40.000 4.53 0.00 0.00 4.35
645 746 5.859205 AATTCATCAAGTAATGGGCCTTC 57.141 39.130 4.53 0.00 0.00 3.46
647 748 4.524802 TCATCAAGTAATGGGCCTTCAT 57.475 40.909 4.53 0.00 0.00 2.57
649 750 6.012337 TCATCAAGTAATGGGCCTTCATAA 57.988 37.500 4.53 0.00 0.00 1.90
650 751 6.430864 TCATCAAGTAATGGGCCTTCATAAA 58.569 36.000 4.53 0.00 0.00 1.40
651 752 6.894654 TCATCAAGTAATGGGCCTTCATAAAA 59.105 34.615 4.53 0.00 0.00 1.52
652 753 6.773976 TCAAGTAATGGGCCTTCATAAAAG 57.226 37.500 4.53 0.00 0.00 2.27
674 805 4.215613 AGGCAGACAAACGGAAATAAGAAC 59.784 41.667 0.00 0.00 0.00 3.01
686 817 3.994931 AATAAGAACGGGCTACCAGTT 57.005 42.857 1.63 1.63 36.61 3.16
687 818 3.994931 ATAAGAACGGGCTACCAGTTT 57.005 42.857 3.67 0.00 34.96 2.66
694 825 2.285977 CGGGCTACCAGTTTGTTATCC 58.714 52.381 0.00 0.00 36.13 2.59
735 866 1.361668 CGCCTCAAATGACTGGGTCG 61.362 60.000 0.00 0.00 34.95 4.79
739 870 2.356125 CCTCAAATGACTGGGTCGGATT 60.356 50.000 0.00 0.00 34.95 3.01
740 871 2.679837 CTCAAATGACTGGGTCGGATTG 59.320 50.000 0.00 0.00 34.95 2.67
741 872 2.039746 TCAAATGACTGGGTCGGATTGT 59.960 45.455 0.00 0.00 34.95 2.71
742 873 2.403252 AATGACTGGGTCGGATTGTC 57.597 50.000 0.00 0.00 34.95 3.18
743 874 1.573108 ATGACTGGGTCGGATTGTCT 58.427 50.000 0.00 0.00 34.95 3.41
744 875 2.225382 TGACTGGGTCGGATTGTCTA 57.775 50.000 0.00 0.00 34.95 2.59
745 876 2.531771 TGACTGGGTCGGATTGTCTAA 58.468 47.619 0.00 0.00 34.95 2.10
746 877 2.901192 TGACTGGGTCGGATTGTCTAAA 59.099 45.455 0.00 0.00 34.95 1.85
747 878 3.325425 TGACTGGGTCGGATTGTCTAAAA 59.675 43.478 0.00 0.00 34.95 1.52
748 879 4.202377 TGACTGGGTCGGATTGTCTAAAAA 60.202 41.667 0.00 0.00 34.95 1.94
772 903 1.203013 TGACTGGGTCGGAGAGAGAAA 60.203 52.381 0.00 0.00 36.95 2.52
786 917 2.437716 GAAATTCGCCGGCAGGGA 60.438 61.111 28.98 13.41 38.47 4.20
792 923 2.709125 TTCGCCGGCAGGGAATATCG 62.709 60.000 28.98 5.69 42.08 2.92
804 935 4.274950 CAGGGAATATCGTTTGCCGTATTT 59.725 41.667 0.00 0.00 41.59 1.40
807 938 5.440685 GGAATATCGTTTGCCGTATTTCTG 58.559 41.667 0.00 0.00 37.94 3.02
812 943 2.031508 CGTTTGCCGTATTTCTGTGGTT 60.032 45.455 0.00 0.00 0.00 3.67
814 945 4.364860 GTTTGCCGTATTTCTGTGGTTTT 58.635 39.130 0.00 0.00 0.00 2.43
815 946 5.521544 GTTTGCCGTATTTCTGTGGTTTTA 58.478 37.500 0.00 0.00 0.00 1.52
988 1172 0.100682 CACTGACCGTCCGATCGATT 59.899 55.000 18.66 0.00 0.00 3.34
990 1174 0.317938 CTGACCGTCCGATCGATTCC 60.318 60.000 18.66 0.00 0.00 3.01
1276 1463 2.540361 GCCGAGCTGAATAATGTTGCTG 60.540 50.000 0.00 0.00 33.83 4.41
1283 1470 2.163412 TGAATAATGTTGCTGCCGTTCC 59.837 45.455 0.00 0.00 0.00 3.62
1303 1490 2.354303 CCGTTGTGTTCCCTAGTGCATA 60.354 50.000 0.00 0.00 0.00 3.14
1338 1525 5.865085 AGTACTGTCTTCCATGCTTTGTTA 58.135 37.500 0.00 0.00 0.00 2.41
1365 1552 3.181496 GCTTAACTGGCTTGGCTATGTTC 60.181 47.826 0.00 0.00 0.00 3.18
1406 1793 3.543494 CGCGAATCAGCAATAAACCTTTG 59.457 43.478 0.00 0.00 36.85 2.77
1420 1807 9.113876 CAATAAACCTTTGCTTTCTTAACTACG 57.886 33.333 0.00 0.00 0.00 3.51
1421 1808 6.688637 AAACCTTTGCTTTCTTAACTACGT 57.311 33.333 0.00 0.00 0.00 3.57
1422 1809 7.790823 AAACCTTTGCTTTCTTAACTACGTA 57.209 32.000 0.00 0.00 0.00 3.57
1423 1810 6.775939 ACCTTTGCTTTCTTAACTACGTAC 57.224 37.500 0.00 0.00 0.00 3.67
1424 1811 6.519382 ACCTTTGCTTTCTTAACTACGTACT 58.481 36.000 0.00 0.00 0.00 2.73
1425 1812 6.644181 ACCTTTGCTTTCTTAACTACGTACTC 59.356 38.462 0.00 0.00 0.00 2.59
1429 1816 5.009911 TGCTTTCTTAACTACGTACTCCACA 59.990 40.000 0.00 0.00 0.00 4.17
1430 1817 5.572126 GCTTTCTTAACTACGTACTCCACAG 59.428 44.000 0.00 0.00 0.00 3.66
1431 1818 6.639632 TTTCTTAACTACGTACTCCACAGT 57.360 37.500 0.00 0.00 36.55 3.55
1479 1870 6.692486 ACTCGAGATGTAGTTGAAAGAATGT 58.308 36.000 21.68 0.00 0.00 2.71
1488 1879 9.640963 ATGTAGTTGAAAGAATGTAGTGTAGAC 57.359 33.333 0.00 0.00 0.00 2.59
1521 1912 0.526524 TTGAAAAAGCGGTGCGGTTG 60.527 50.000 0.00 0.00 46.74 3.77
1522 1913 1.660264 GAAAAAGCGGTGCGGTTGG 60.660 57.895 0.00 0.00 46.74 3.77
1550 1968 7.467557 AAACACAGTTACAAAATTGATGCTG 57.532 32.000 0.00 7.00 33.49 4.41
1573 1991 7.164826 GCTGAAAATAGCATCGATAAACACTTG 59.835 37.037 0.00 0.00 43.17 3.16
1586 2853 2.405892 ACACTTGATTTGAAGCACGC 57.594 45.000 0.00 0.00 0.00 5.34
1593 2860 3.637432 TGATTTGAAGCACGCGAAAAAT 58.363 36.364 15.93 8.94 0.00 1.82
1594 2861 4.788690 TGATTTGAAGCACGCGAAAAATA 58.211 34.783 15.93 0.00 0.00 1.40
1595 2862 4.615121 TGATTTGAAGCACGCGAAAAATAC 59.385 37.500 15.93 0.00 0.00 1.89
1596 2863 3.610786 TTGAAGCACGCGAAAAATACA 57.389 38.095 15.93 0.81 0.00 2.29
1598 2865 4.153958 TGAAGCACGCGAAAAATACAAT 57.846 36.364 15.93 0.00 0.00 2.71
1599 2866 4.541779 TGAAGCACGCGAAAAATACAATT 58.458 34.783 15.93 0.00 0.00 2.32
1600 2867 5.690816 TGAAGCACGCGAAAAATACAATTA 58.309 33.333 15.93 0.00 0.00 1.40
1601 2868 6.318628 TGAAGCACGCGAAAAATACAATTAT 58.681 32.000 15.93 0.00 0.00 1.28
1604 2871 7.659290 AGCACGCGAAAAATACAATTATAAC 57.341 32.000 15.93 0.00 0.00 1.89
1605 2872 7.244898 AGCACGCGAAAAATACAATTATAACA 58.755 30.769 15.93 0.00 0.00 2.41
1606 2873 7.428183 AGCACGCGAAAAATACAATTATAACAG 59.572 33.333 15.93 0.00 0.00 3.16
1607 2874 7.305190 GCACGCGAAAAATACAATTATAACAGG 60.305 37.037 15.93 0.00 0.00 4.00
1608 2875 6.689669 ACGCGAAAAATACAATTATAACAGGC 59.310 34.615 15.93 0.00 0.00 4.85
1609 2876 6.129820 CGCGAAAAATACAATTATAACAGGCG 60.130 38.462 0.00 0.00 0.00 5.52
1628 2898 5.176590 CAGGCGATAGAGTTAAAGAAGATGC 59.823 44.000 0.00 0.00 39.76 3.91
1629 2899 5.050490 GGCGATAGAGTTAAAGAAGATGCA 58.950 41.667 0.00 0.00 39.76 3.96
1630 2900 5.050702 GGCGATAGAGTTAAAGAAGATGCAC 60.051 44.000 0.00 0.00 39.76 4.57
1631 2901 5.751028 GCGATAGAGTTAAAGAAGATGCACT 59.249 40.000 0.00 0.00 39.76 4.40
1632 2902 6.918569 GCGATAGAGTTAAAGAAGATGCACTA 59.081 38.462 0.00 0.00 39.76 2.74
1649 2930 4.210328 TGCACTAGTACATTGTTGTCAACG 59.790 41.667 11.03 0.00 37.28 4.10
1657 2938 0.945099 TTGTTGTCAACGGCGCAATA 59.055 45.000 10.83 0.00 0.00 1.90
1658 2939 0.236187 TGTTGTCAACGGCGCAATAC 59.764 50.000 10.83 0.49 0.00 1.89
1661 2942 0.793861 TGTCAACGGCGCAATACTTC 59.206 50.000 10.83 0.00 0.00 3.01
1678 2959 7.870445 GCAATACTTCCTTCCACATTGTTTTTA 59.130 33.333 0.00 0.00 0.00 1.52
1681 2962 5.069914 ACTTCCTTCCACATTGTTTTTACCC 59.930 40.000 0.00 0.00 0.00 3.69
1740 3021 2.357034 GCTCGGGCAAGTGTTCGA 60.357 61.111 0.00 0.00 38.54 3.71
1741 3022 3.862124 CTCGGGCAAGTGTTCGAG 58.138 61.111 9.66 9.66 42.09 4.04
1742 3023 3.450507 TCGGGCAAGTGTTCGAGA 58.549 55.556 0.00 0.00 0.00 4.04
1743 3024 1.743391 TCGGGCAAGTGTTCGAGAA 59.257 52.632 0.00 0.00 0.00 2.87
1744 3025 0.105224 TCGGGCAAGTGTTCGAGAAA 59.895 50.000 0.00 0.00 0.00 2.52
1745 3026 0.941542 CGGGCAAGTGTTCGAGAAAA 59.058 50.000 0.00 0.00 0.00 2.29
1746 3027 1.332375 CGGGCAAGTGTTCGAGAAAAA 59.668 47.619 0.00 0.00 0.00 1.94
1748 3029 2.616842 GGGCAAGTGTTCGAGAAAAAGA 59.383 45.455 0.00 0.00 0.00 2.52
1749 3030 3.066203 GGGCAAGTGTTCGAGAAAAAGAA 59.934 43.478 0.00 0.00 0.00 2.52
1750 3031 4.439563 GGGCAAGTGTTCGAGAAAAAGAAA 60.440 41.667 0.00 0.00 0.00 2.52
1751 3032 5.099575 GGCAAGTGTTCGAGAAAAAGAAAA 58.900 37.500 0.00 0.00 0.00 2.29
1774 3069 5.137412 ACCATTAAGGCCCTGCTTTATAA 57.863 39.130 0.00 0.00 43.14 0.98
1855 3151 3.113979 CTCAGCGCGCACATGACA 61.114 61.111 35.10 6.95 0.00 3.58
2011 3323 2.430465 GCCACACACAGATCACTCAAT 58.570 47.619 0.00 0.00 0.00 2.57
2030 3342 6.268847 ACTCAATATTATCTGTCCTCCTGTCC 59.731 42.308 0.00 0.00 0.00 4.02
2031 3343 6.385443 TCAATATTATCTGTCCTCCTGTCCT 58.615 40.000 0.00 0.00 0.00 3.85
2033 3345 3.474798 TTATCTGTCCTCCTGTCCTGT 57.525 47.619 0.00 0.00 0.00 4.00
2040 3352 2.606519 TCCTGTCCTGTTCCCCCG 60.607 66.667 0.00 0.00 0.00 5.73
2049 3361 2.668550 GTTCCCCCGTGACACTGC 60.669 66.667 3.68 0.00 0.00 4.40
2113 3427 6.175471 TCTTTCAAGCTCAGCATCAGAAATA 58.825 36.000 0.00 0.00 0.00 1.40
2132 3446 7.797587 CAGAAATAGCGAATGATCTCAAATGTC 59.202 37.037 0.00 0.00 0.00 3.06
2200 3514 2.809174 CGCGACCAACGATGAGCA 60.809 61.111 0.00 0.00 45.77 4.26
2204 3518 0.439985 CGACCAACGATGAGCAACAG 59.560 55.000 0.00 0.00 45.77 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.199880 AGCCCATAAAGTCTGATTCGG 57.800 47.619 0.00 0.00 0.00 4.30
4 5 6.097412 GGATTTGAAGCCCATAAAGTCTGATT 59.903 38.462 0.00 0.00 0.00 2.57
6 7 4.949856 GGATTTGAAGCCCATAAAGTCTGA 59.050 41.667 0.00 0.00 0.00 3.27
7 8 4.706476 TGGATTTGAAGCCCATAAAGTCTG 59.294 41.667 0.00 0.00 32.20 3.51
8 9 4.934356 TGGATTTGAAGCCCATAAAGTCT 58.066 39.130 0.00 0.00 32.20 3.24
9 10 5.410924 GTTGGATTTGAAGCCCATAAAGTC 58.589 41.667 0.00 0.00 32.20 3.01
10 11 4.222810 GGTTGGATTTGAAGCCCATAAAGT 59.777 41.667 0.00 0.00 32.20 2.66
11 12 4.383010 GGGTTGGATTTGAAGCCCATAAAG 60.383 45.833 0.00 0.00 35.33 1.85
12 13 3.517500 GGGTTGGATTTGAAGCCCATAAA 59.482 43.478 0.00 0.00 35.33 1.40
13 14 3.103742 GGGTTGGATTTGAAGCCCATAA 58.896 45.455 0.00 0.00 35.33 1.90
14 15 2.745968 GGGTTGGATTTGAAGCCCATA 58.254 47.619 0.00 0.00 35.33 2.74
15 16 1.571955 GGGTTGGATTTGAAGCCCAT 58.428 50.000 0.00 0.00 35.33 4.00
16 17 0.897863 CGGGTTGGATTTGAAGCCCA 60.898 55.000 0.00 0.00 37.64 5.36
17 18 1.604147 CCGGGTTGGATTTGAAGCCC 61.604 60.000 0.00 0.00 42.00 5.19
18 19 0.898326 ACCGGGTTGGATTTGAAGCC 60.898 55.000 6.32 0.00 42.00 4.35
19 20 0.243636 CACCGGGTTGGATTTGAAGC 59.756 55.000 6.32 0.00 42.00 3.86
20 21 0.243636 GCACCGGGTTGGATTTGAAG 59.756 55.000 6.32 0.00 42.00 3.02
21 22 1.519751 CGCACCGGGTTGGATTTGAA 61.520 55.000 6.32 0.00 42.00 2.69
22 23 1.969064 CGCACCGGGTTGGATTTGA 60.969 57.895 6.32 0.00 42.00 2.69
23 24 1.519751 TTCGCACCGGGTTGGATTTG 61.520 55.000 6.32 0.00 42.00 2.32
24 25 0.610785 ATTCGCACCGGGTTGGATTT 60.611 50.000 6.32 0.00 42.00 2.17
25 26 0.610785 AATTCGCACCGGGTTGGATT 60.611 50.000 6.32 0.00 42.00 3.01
26 27 1.001393 AATTCGCACCGGGTTGGAT 60.001 52.632 6.32 0.00 42.00 3.41
27 28 1.969064 CAATTCGCACCGGGTTGGA 60.969 57.895 6.32 0.00 42.00 3.53
28 29 2.566010 CAATTCGCACCGGGTTGG 59.434 61.111 6.32 0.00 46.41 3.77
29 30 1.922135 CTCCAATTCGCACCGGGTTG 61.922 60.000 6.32 0.00 0.00 3.77
30 31 1.674322 CTCCAATTCGCACCGGGTT 60.674 57.895 6.32 0.00 0.00 4.11
31 32 2.046314 CTCCAATTCGCACCGGGT 60.046 61.111 6.32 0.00 0.00 5.28
32 33 1.644786 GAACTCCAATTCGCACCGGG 61.645 60.000 6.32 0.00 0.00 5.73
33 34 1.794222 GAACTCCAATTCGCACCGG 59.206 57.895 0.00 0.00 0.00 5.28
34 35 1.419922 CGAACTCCAATTCGCACCG 59.580 57.895 0.00 0.00 44.37 4.94
40 41 1.069227 GTGTGCCACGAACTCCAATTC 60.069 52.381 0.00 0.00 0.00 2.17
41 42 0.951558 GTGTGCCACGAACTCCAATT 59.048 50.000 0.00 0.00 0.00 2.32
42 43 0.179032 TGTGTGCCACGAACTCCAAT 60.179 50.000 0.00 0.00 37.14 3.16
43 44 0.179032 ATGTGTGCCACGAACTCCAA 60.179 50.000 0.00 0.00 37.14 3.53
44 45 0.179032 AATGTGTGCCACGAACTCCA 60.179 50.000 0.00 0.00 37.14 3.86
45 46 0.951558 AAATGTGTGCCACGAACTCC 59.048 50.000 0.00 0.00 37.14 3.85
46 47 2.223479 ACAAAATGTGTGCCACGAACTC 60.223 45.455 0.00 0.00 39.72 3.01
47 48 1.748493 ACAAAATGTGTGCCACGAACT 59.252 42.857 0.00 0.00 39.72 3.01
48 49 2.202295 ACAAAATGTGTGCCACGAAC 57.798 45.000 0.00 0.00 39.72 3.95
49 50 2.164422 TGAACAAAATGTGTGCCACGAA 59.836 40.909 0.00 0.00 40.60 3.85
50 51 1.745653 TGAACAAAATGTGTGCCACGA 59.254 42.857 0.00 0.00 40.60 4.35
51 52 2.200792 TGAACAAAATGTGTGCCACG 57.799 45.000 0.00 0.00 40.60 4.94
52 53 4.032786 GTCTTTGAACAAAATGTGTGCCAC 59.967 41.667 1.76 0.00 40.60 5.01
53 54 4.180057 GTCTTTGAACAAAATGTGTGCCA 58.820 39.130 1.76 0.00 40.60 4.92
54 55 3.242712 CGTCTTTGAACAAAATGTGTGCC 59.757 43.478 1.76 0.00 40.60 5.01
55 56 4.101942 TCGTCTTTGAACAAAATGTGTGC 58.898 39.130 1.76 0.00 40.60 4.57
56 57 6.810888 AATCGTCTTTGAACAAAATGTGTG 57.189 33.333 1.76 0.00 40.60 3.82
57 58 7.257722 AGAAATCGTCTTTGAACAAAATGTGT 58.742 30.769 1.76 0.00 35.71 3.72
58 59 7.096477 GGAGAAATCGTCTTTGAACAAAATGTG 60.096 37.037 1.76 0.00 36.41 3.21
59 60 6.918022 GGAGAAATCGTCTTTGAACAAAATGT 59.082 34.615 1.76 0.00 36.41 2.71
60 61 6.917477 TGGAGAAATCGTCTTTGAACAAAATG 59.083 34.615 1.76 0.39 36.41 2.32
61 62 7.038154 TGGAGAAATCGTCTTTGAACAAAAT 57.962 32.000 1.76 0.00 36.41 1.82
62 63 6.443934 TGGAGAAATCGTCTTTGAACAAAA 57.556 33.333 1.76 0.00 36.41 2.44
63 64 6.633500 ATGGAGAAATCGTCTTTGAACAAA 57.367 33.333 0.17 0.17 36.41 2.83
64 65 6.633500 AATGGAGAAATCGTCTTTGAACAA 57.367 33.333 0.00 0.00 36.41 2.83
65 66 7.158697 TCTAATGGAGAAATCGTCTTTGAACA 58.841 34.615 0.00 0.00 36.41 3.18
66 67 7.332182 ACTCTAATGGAGAAATCGTCTTTGAAC 59.668 37.037 0.00 0.00 44.45 3.18
67 68 7.386851 ACTCTAATGGAGAAATCGTCTTTGAA 58.613 34.615 0.00 0.00 44.45 2.69
68 69 6.936279 ACTCTAATGGAGAAATCGTCTTTGA 58.064 36.000 0.00 0.00 44.45 2.69
69 70 7.602517 AACTCTAATGGAGAAATCGTCTTTG 57.397 36.000 0.00 0.00 44.45 2.77
70 71 7.119846 CCAAACTCTAATGGAGAAATCGTCTTT 59.880 37.037 0.00 0.00 44.45 2.52
71 72 6.595716 CCAAACTCTAATGGAGAAATCGTCTT 59.404 38.462 0.00 0.00 44.45 3.01
72 73 6.070767 TCCAAACTCTAATGGAGAAATCGTCT 60.071 38.462 0.00 0.00 44.45 4.18
73 74 6.106673 TCCAAACTCTAATGGAGAAATCGTC 58.893 40.000 0.00 0.00 44.45 4.20
74 75 6.049955 TCCAAACTCTAATGGAGAAATCGT 57.950 37.500 0.00 0.00 44.45 3.73
75 76 6.985188 TTCCAAACTCTAATGGAGAAATCG 57.015 37.500 0.00 0.00 45.94 3.34
76 77 8.286191 ACATTCCAAACTCTAATGGAGAAATC 57.714 34.615 0.00 0.00 45.94 2.17
77 78 9.401058 CTACATTCCAAACTCTAATGGAGAAAT 57.599 33.333 0.00 0.00 45.94 2.17
78 79 8.383175 ACTACATTCCAAACTCTAATGGAGAAA 58.617 33.333 12.28 0.00 45.94 2.52
79 80 7.918076 ACTACATTCCAAACTCTAATGGAGAA 58.082 34.615 12.28 0.00 45.94 2.87
80 81 7.496346 ACTACATTCCAAACTCTAATGGAGA 57.504 36.000 12.28 0.00 45.94 3.71
81 82 9.667107 TTAACTACATTCCAAACTCTAATGGAG 57.333 33.333 5.22 5.22 45.94 3.86
82 83 9.667107 CTTAACTACATTCCAAACTCTAATGGA 57.333 33.333 0.00 0.00 43.84 3.41
83 84 8.398665 GCTTAACTACATTCCAAACTCTAATGG 58.601 37.037 0.00 0.00 35.40 3.16
84 85 8.398665 GGCTTAACTACATTCCAAACTCTAATG 58.601 37.037 0.00 0.00 36.80 1.90
85 86 7.556635 GGGCTTAACTACATTCCAAACTCTAAT 59.443 37.037 0.00 0.00 0.00 1.73
86 87 6.882678 GGGCTTAACTACATTCCAAACTCTAA 59.117 38.462 0.00 0.00 0.00 2.10
87 88 6.214819 AGGGCTTAACTACATTCCAAACTCTA 59.785 38.462 0.00 0.00 0.00 2.43
88 89 5.014228 AGGGCTTAACTACATTCCAAACTCT 59.986 40.000 0.00 0.00 0.00 3.24
89 90 5.123979 CAGGGCTTAACTACATTCCAAACTC 59.876 44.000 0.00 0.00 0.00 3.01
90 91 5.010282 CAGGGCTTAACTACATTCCAAACT 58.990 41.667 0.00 0.00 0.00 2.66
91 92 4.157840 CCAGGGCTTAACTACATTCCAAAC 59.842 45.833 0.00 0.00 0.00 2.93
92 93 4.340617 CCAGGGCTTAACTACATTCCAAA 58.659 43.478 0.00 0.00 0.00 3.28
93 94 3.308832 CCCAGGGCTTAACTACATTCCAA 60.309 47.826 0.00 0.00 0.00 3.53
94 95 2.241176 CCCAGGGCTTAACTACATTCCA 59.759 50.000 0.00 0.00 0.00 3.53
95 96 2.241430 ACCCAGGGCTTAACTACATTCC 59.759 50.000 4.91 0.00 0.00 3.01
96 97 3.646736 ACCCAGGGCTTAACTACATTC 57.353 47.619 4.91 0.00 0.00 2.67
97 98 3.332485 TCAACCCAGGGCTTAACTACATT 59.668 43.478 4.91 0.00 0.00 2.71
98 99 2.916934 TCAACCCAGGGCTTAACTACAT 59.083 45.455 4.91 0.00 0.00 2.29
99 100 2.039348 GTCAACCCAGGGCTTAACTACA 59.961 50.000 4.91 0.00 0.00 2.74
100 101 2.039348 TGTCAACCCAGGGCTTAACTAC 59.961 50.000 4.91 0.00 0.00 2.73
101 102 2.039348 GTGTCAACCCAGGGCTTAACTA 59.961 50.000 4.91 0.00 0.00 2.24
102 103 1.145571 TGTCAACCCAGGGCTTAACT 58.854 50.000 4.91 0.00 0.00 2.24
103 104 1.244816 GTGTCAACCCAGGGCTTAAC 58.755 55.000 4.91 0.00 0.00 2.01
104 105 0.250553 CGTGTCAACCCAGGGCTTAA 60.251 55.000 4.91 0.00 0.00 1.85
105 106 1.373435 CGTGTCAACCCAGGGCTTA 59.627 57.895 4.91 0.00 0.00 3.09
106 107 2.113139 CGTGTCAACCCAGGGCTT 59.887 61.111 4.91 0.00 0.00 4.35
107 108 4.643387 GCGTGTCAACCCAGGGCT 62.643 66.667 4.91 0.00 0.00 5.19
111 112 4.308458 TCCGGCGTGTCAACCCAG 62.308 66.667 6.01 0.00 0.00 4.45
112 113 4.308458 CTCCGGCGTGTCAACCCA 62.308 66.667 6.01 0.00 0.00 4.51
113 114 3.819877 AACTCCGGCGTGTCAACCC 62.820 63.158 6.01 0.00 0.00 4.11
114 115 2.280592 AACTCCGGCGTGTCAACC 60.281 61.111 6.01 0.00 0.00 3.77
115 116 1.557443 CTCAACTCCGGCGTGTCAAC 61.557 60.000 6.01 0.00 0.00 3.18
116 117 1.300620 CTCAACTCCGGCGTGTCAA 60.301 57.895 6.01 0.00 0.00 3.18
117 118 2.338620 CTCAACTCCGGCGTGTCA 59.661 61.111 6.01 0.00 0.00 3.58
118 119 3.112709 GCTCAACTCCGGCGTGTC 61.113 66.667 6.01 0.00 0.00 3.67
119 120 3.923864 TGCTCAACTCCGGCGTGT 61.924 61.111 6.01 0.88 0.00 4.49
120 121 3.414700 GTGCTCAACTCCGGCGTG 61.415 66.667 6.01 0.14 0.00 5.34
121 122 3.165160 AAGTGCTCAACTCCGGCGT 62.165 57.895 6.01 0.00 38.56 5.68
122 123 2.357517 AAGTGCTCAACTCCGGCG 60.358 61.111 0.00 0.00 38.56 6.46
123 124 1.004440 AGAAGTGCTCAACTCCGGC 60.004 57.895 0.00 0.00 38.56 6.13
124 125 0.318441 TCAGAAGTGCTCAACTCCGG 59.682 55.000 0.00 0.00 38.56 5.14
125 126 1.000283 AGTCAGAAGTGCTCAACTCCG 60.000 52.381 0.00 0.00 38.56 4.63
126 127 2.411904 CAGTCAGAAGTGCTCAACTCC 58.588 52.381 0.00 0.00 38.56 3.85
127 128 2.411904 CCAGTCAGAAGTGCTCAACTC 58.588 52.381 0.00 0.00 38.56 3.01
128 129 1.071385 CCCAGTCAGAAGTGCTCAACT 59.929 52.381 0.00 0.00 42.60 3.16
129 130 1.517242 CCCAGTCAGAAGTGCTCAAC 58.483 55.000 0.00 0.00 0.00 3.18
130 131 0.397941 CCCCAGTCAGAAGTGCTCAA 59.602 55.000 0.00 0.00 0.00 3.02
131 132 0.471780 TCCCCAGTCAGAAGTGCTCA 60.472 55.000 0.00 0.00 0.00 4.26
132 133 0.248843 CTCCCCAGTCAGAAGTGCTC 59.751 60.000 0.00 0.00 0.00 4.26
133 134 0.178921 TCTCCCCAGTCAGAAGTGCT 60.179 55.000 0.00 0.00 0.00 4.40
134 135 0.036858 GTCTCCCCAGTCAGAAGTGC 60.037 60.000 0.00 0.00 0.00 4.40
135 136 0.610687 GGTCTCCCCAGTCAGAAGTG 59.389 60.000 0.00 0.00 0.00 3.16
136 137 0.489567 AGGTCTCCCCAGTCAGAAGT 59.510 55.000 0.00 0.00 34.66 3.01
137 138 1.190643 GAGGTCTCCCCAGTCAGAAG 58.809 60.000 0.00 0.00 34.66 2.85
138 139 0.252284 GGAGGTCTCCCCAGTCAGAA 60.252 60.000 5.73 0.00 43.94 3.02
139 140 1.388531 GGAGGTCTCCCCAGTCAGA 59.611 63.158 5.73 0.00 43.94 3.27
140 141 2.055042 CGGAGGTCTCCCCAGTCAG 61.055 68.421 11.08 0.00 46.96 3.51
141 142 2.037367 CGGAGGTCTCCCCAGTCA 59.963 66.667 11.08 0.00 46.96 3.41
142 143 2.037527 ACGGAGGTCTCCCCAGTC 59.962 66.667 11.08 0.00 46.96 3.51
143 144 2.283966 CACGGAGGTCTCCCCAGT 60.284 66.667 11.08 1.40 46.96 4.00
144 145 3.775654 GCACGGAGGTCTCCCCAG 61.776 72.222 11.08 3.17 46.96 4.45
145 146 3.846405 AAGCACGGAGGTCTCCCCA 62.846 63.158 11.08 0.00 46.96 4.96
146 147 3.003763 AAGCACGGAGGTCTCCCC 61.004 66.667 11.08 1.07 46.96 4.81
147 148 2.266055 CAAGCACGGAGGTCTCCC 59.734 66.667 11.08 0.00 46.96 4.30
148 149 2.266055 CCAAGCACGGAGGTCTCC 59.734 66.667 6.94 6.94 46.18 3.71
149 150 1.374758 CACCAAGCACGGAGGTCTC 60.375 63.158 0.00 0.00 32.15 3.36
150 151 2.743718 CACCAAGCACGGAGGTCT 59.256 61.111 0.00 0.00 32.15 3.85
151 152 2.358737 CCACCAAGCACGGAGGTC 60.359 66.667 0.00 0.00 32.48 3.85
152 153 3.953775 CCCACCAAGCACGGAGGT 61.954 66.667 7.05 0.00 35.15 3.85
154 155 4.641645 TGCCCACCAAGCACGGAG 62.642 66.667 0.00 0.00 34.69 4.63
155 156 4.196778 TTGCCCACCAAGCACGGA 62.197 61.111 0.00 0.00 40.69 4.69
156 157 3.977244 GTTGCCCACCAAGCACGG 61.977 66.667 0.00 0.00 40.69 4.94
169 170 3.810936 CTCGACTGAGAAGCATGGTTGC 61.811 54.545 16.18 7.48 46.33 4.17
170 171 1.998315 CTCGACTGAGAAGCATGGTTG 59.002 52.381 16.18 2.87 45.57 3.77
171 172 1.066573 CCTCGACTGAGAAGCATGGTT 60.067 52.381 10.50 10.50 45.57 3.67
172 173 0.534412 CCTCGACTGAGAAGCATGGT 59.466 55.000 0.00 0.00 45.57 3.55
173 174 0.820226 TCCTCGACTGAGAAGCATGG 59.180 55.000 0.00 0.00 45.57 3.66
174 175 1.203287 TGTCCTCGACTGAGAAGCATG 59.797 52.381 0.00 0.00 45.57 4.06
175 176 1.203523 GTGTCCTCGACTGAGAAGCAT 59.796 52.381 0.00 0.00 45.57 3.79
176 177 0.598562 GTGTCCTCGACTGAGAAGCA 59.401 55.000 0.00 0.00 45.57 3.91
177 178 0.598562 TGTGTCCTCGACTGAGAAGC 59.401 55.000 0.00 0.00 45.57 3.86
178 179 1.201181 CCTGTGTCCTCGACTGAGAAG 59.799 57.143 0.00 0.00 45.57 2.85
179 180 1.202891 TCCTGTGTCCTCGACTGAGAA 60.203 52.381 0.00 0.00 45.57 2.87
180 181 0.400594 TCCTGTGTCCTCGACTGAGA 59.599 55.000 0.00 0.00 45.57 3.27
181 182 1.248486 TTCCTGTGTCCTCGACTGAG 58.752 55.000 0.00 0.00 42.18 3.35
182 183 1.613925 CTTTCCTGTGTCCTCGACTGA 59.386 52.381 0.00 0.00 33.15 3.41
183 184 1.337260 CCTTTCCTGTGTCCTCGACTG 60.337 57.143 0.00 0.00 33.15 3.51
184 185 0.969894 CCTTTCCTGTGTCCTCGACT 59.030 55.000 0.00 0.00 33.15 4.18
185 186 0.966920 TCCTTTCCTGTGTCCTCGAC 59.033 55.000 0.00 0.00 0.00 4.20
186 187 1.712056 TTCCTTTCCTGTGTCCTCGA 58.288 50.000 0.00 0.00 0.00 4.04
187 188 2.417719 CTTTCCTTTCCTGTGTCCTCG 58.582 52.381 0.00 0.00 0.00 4.63
188 189 2.155279 GCTTTCCTTTCCTGTGTCCTC 58.845 52.381 0.00 0.00 0.00 3.71
189 190 1.494721 TGCTTTCCTTTCCTGTGTCCT 59.505 47.619 0.00 0.00 0.00 3.85
190 191 1.981256 TGCTTTCCTTTCCTGTGTCC 58.019 50.000 0.00 0.00 0.00 4.02
191 192 3.305608 CCATTGCTTTCCTTTCCTGTGTC 60.306 47.826 0.00 0.00 0.00 3.67
192 193 2.629617 CCATTGCTTTCCTTTCCTGTGT 59.370 45.455 0.00 0.00 0.00 3.72
193 194 2.629617 ACCATTGCTTTCCTTTCCTGTG 59.370 45.455 0.00 0.00 0.00 3.66
194 195 2.893489 GACCATTGCTTTCCTTTCCTGT 59.107 45.455 0.00 0.00 0.00 4.00
195 196 3.160269 AGACCATTGCTTTCCTTTCCTG 58.840 45.455 0.00 0.00 0.00 3.86
196 197 3.532641 AGACCATTGCTTTCCTTTCCT 57.467 42.857 0.00 0.00 0.00 3.36
197 198 3.321968 ACAAGACCATTGCTTTCCTTTCC 59.678 43.478 0.00 0.00 0.00 3.13
198 199 4.590850 ACAAGACCATTGCTTTCCTTTC 57.409 40.909 0.00 0.00 0.00 2.62
199 200 5.453567 GTACAAGACCATTGCTTTCCTTT 57.546 39.130 0.00 0.00 0.00 3.11
212 213 5.963655 GCAACGAGCATAAGGTACAAGACC 61.964 50.000 0.00 0.00 46.09 3.85
213 214 3.062234 GCAACGAGCATAAGGTACAAGAC 59.938 47.826 0.00 0.00 44.79 3.01
214 215 3.259064 GCAACGAGCATAAGGTACAAGA 58.741 45.455 0.00 0.00 44.79 3.02
215 216 3.658351 GCAACGAGCATAAGGTACAAG 57.342 47.619 0.00 0.00 44.79 3.16
247 248 0.605589 CCCATGCAACCGGCTAAAAA 59.394 50.000 0.00 0.00 45.15 1.94
337 338 3.399330 GTGACCGAATTCTTGACCTCAA 58.601 45.455 3.52 0.00 0.00 3.02
357 358 0.827507 AAATGCTTTGCACCTCCGGT 60.828 50.000 0.00 0.00 43.04 5.28
358 359 0.318120 AAAATGCTTTGCACCTCCGG 59.682 50.000 0.00 0.00 43.04 5.14
359 360 1.000385 TCAAAATGCTTTGCACCTCCG 60.000 47.619 0.00 0.00 43.04 4.63
360 361 2.036346 ACTCAAAATGCTTTGCACCTCC 59.964 45.455 0.00 0.00 43.04 4.30
361 362 3.375782 ACTCAAAATGCTTTGCACCTC 57.624 42.857 0.00 0.00 43.04 3.85
362 363 3.825143 AACTCAAAATGCTTTGCACCT 57.175 38.095 0.00 0.00 43.04 4.00
363 364 4.880886 AAAACTCAAAATGCTTTGCACC 57.119 36.364 0.00 0.00 43.04 5.01
369 370 8.434661 CGCACAATTATAAAACTCAAAATGCTT 58.565 29.630 0.00 0.00 0.00 3.91
370 371 7.812191 TCGCACAATTATAAAACTCAAAATGCT 59.188 29.630 0.00 0.00 0.00 3.79
371 372 7.948137 TCGCACAATTATAAAACTCAAAATGC 58.052 30.769 0.00 0.00 0.00 3.56
372 373 9.340695 TCTCGCACAATTATAAAACTCAAAATG 57.659 29.630 0.00 0.00 0.00 2.32
373 374 9.559958 CTCTCGCACAATTATAAAACTCAAAAT 57.440 29.630 0.00 0.00 0.00 1.82
374 375 8.779303 TCTCTCGCACAATTATAAAACTCAAAA 58.221 29.630 0.00 0.00 0.00 2.44
375 376 8.317891 TCTCTCGCACAATTATAAAACTCAAA 57.682 30.769 0.00 0.00 0.00 2.69
376 377 7.899178 TCTCTCGCACAATTATAAAACTCAA 57.101 32.000 0.00 0.00 0.00 3.02
377 378 7.817478 TCTTCTCTCGCACAATTATAAAACTCA 59.183 33.333 0.00 0.00 0.00 3.41
378 379 8.111224 GTCTTCTCTCGCACAATTATAAAACTC 58.889 37.037 0.00 0.00 0.00 3.01
379 380 7.819900 AGTCTTCTCTCGCACAATTATAAAACT 59.180 33.333 0.00 0.00 0.00 2.66
380 381 7.965045 AGTCTTCTCTCGCACAATTATAAAAC 58.035 34.615 0.00 0.00 0.00 2.43
381 382 8.547967 AAGTCTTCTCTCGCACAATTATAAAA 57.452 30.769 0.00 0.00 0.00 1.52
382 383 8.547967 AAAGTCTTCTCTCGCACAATTATAAA 57.452 30.769 0.00 0.00 0.00 1.40
383 384 8.547967 AAAAGTCTTCTCTCGCACAATTATAA 57.452 30.769 0.00 0.00 0.00 0.98
384 385 8.443160 CAAAAAGTCTTCTCTCGCACAATTATA 58.557 33.333 0.00 0.00 0.00 0.98
385 386 7.041098 ACAAAAAGTCTTCTCTCGCACAATTAT 60.041 33.333 0.00 0.00 0.00 1.28
399 400 2.306847 TGGGAGCCACAAAAAGTCTTC 58.693 47.619 0.00 0.00 0.00 2.87
400 401 2.452600 TGGGAGCCACAAAAAGTCTT 57.547 45.000 0.00 0.00 0.00 3.01
414 415 5.713025 CATTTACACCTCAACAAATGGGAG 58.287 41.667 0.00 0.00 35.63 4.30
430 431 3.650942 AGGTTCAGTGAGGTCCATTTACA 59.349 43.478 11.70 0.00 0.00 2.41
433 434 2.040412 GGAGGTTCAGTGAGGTCCATTT 59.960 50.000 10.98 0.00 0.00 2.32
441 442 4.082190 TGAGATTAACGGAGGTTCAGTGAG 60.082 45.833 0.00 0.00 37.58 3.51
454 455 2.159653 GCACTTGCCACTGAGATTAACG 60.160 50.000 0.00 0.00 34.31 3.18
458 459 1.202855 AGTGCACTTGCCACTGAGATT 60.203 47.619 15.25 0.00 41.18 2.40
470 471 4.032960 TGTTCATTGGGATAGTGCACTT 57.967 40.909 27.06 12.95 0.00 3.16
477 478 4.264253 TGCAGACTTGTTCATTGGGATAG 58.736 43.478 0.00 0.00 0.00 2.08
479 480 3.159213 TGCAGACTTGTTCATTGGGAT 57.841 42.857 0.00 0.00 0.00 3.85
482 483 5.645067 TCTCTTATGCAGACTTGTTCATTGG 59.355 40.000 0.00 0.00 0.00 3.16
485 486 6.647229 TGATCTCTTATGCAGACTTGTTCAT 58.353 36.000 0.00 0.00 0.00 2.57
490 491 5.177881 GCATCTGATCTCTTATGCAGACTTG 59.822 44.000 13.58 0.00 43.30 3.16
492 493 4.262549 GGCATCTGATCTCTTATGCAGACT 60.263 45.833 17.63 0.00 45.13 3.24
514 515 2.260434 GCTGCATGTGCCAAGTGG 59.740 61.111 2.07 0.00 41.18 4.00
523 524 2.625314 TCTTAGATAGCTCGCTGCATGT 59.375 45.455 0.85 0.00 45.94 3.21
531 532 4.764679 ATGCACTCTCTTAGATAGCTCG 57.235 45.455 0.00 0.00 0.00 5.03
542 543 3.262915 AGAGTGGCTTTTATGCACTCTCT 59.737 43.478 12.14 0.00 42.16 3.10
543 544 3.604582 AGAGTGGCTTTTATGCACTCTC 58.395 45.455 12.14 0.00 42.16 3.20
613 662 8.917088 CCATTACTTGATGAATTAGGAAATGGT 58.083 33.333 0.00 0.00 34.81 3.55
615 664 7.869429 GCCCATTACTTGATGAATTAGGAAATG 59.131 37.037 0.00 0.00 0.00 2.32
616 665 7.015584 GGCCCATTACTTGATGAATTAGGAAAT 59.984 37.037 0.00 0.00 0.00 2.17
620 669 5.388654 AGGCCCATTACTTGATGAATTAGG 58.611 41.667 0.00 0.00 0.00 2.69
621 670 6.547141 TGAAGGCCCATTACTTGATGAATTAG 59.453 38.462 0.00 0.00 0.00 1.73
627 728 6.713762 TTTATGAAGGCCCATTACTTGATG 57.286 37.500 0.00 0.00 0.00 3.07
630 731 5.906073 CCTTTTATGAAGGCCCATTACTTG 58.094 41.667 0.00 0.00 0.00 3.16
643 744 4.138290 TCCGTTTGTCTGCCTTTTATGAA 58.862 39.130 0.00 0.00 0.00 2.57
644 745 3.745799 TCCGTTTGTCTGCCTTTTATGA 58.254 40.909 0.00 0.00 0.00 2.15
645 746 4.497473 TTCCGTTTGTCTGCCTTTTATG 57.503 40.909 0.00 0.00 0.00 1.90
647 748 6.487331 TCTTATTTCCGTTTGTCTGCCTTTTA 59.513 34.615 0.00 0.00 0.00 1.52
649 750 4.825085 TCTTATTTCCGTTTGTCTGCCTTT 59.175 37.500 0.00 0.00 0.00 3.11
650 751 4.394729 TCTTATTTCCGTTTGTCTGCCTT 58.605 39.130 0.00 0.00 0.00 4.35
651 752 4.015872 TCTTATTTCCGTTTGTCTGCCT 57.984 40.909 0.00 0.00 0.00 4.75
652 753 4.473199 GTTCTTATTTCCGTTTGTCTGCC 58.527 43.478 0.00 0.00 0.00 4.85
656 757 3.668757 GCCCGTTCTTATTTCCGTTTGTC 60.669 47.826 0.00 0.00 0.00 3.18
657 758 2.227149 GCCCGTTCTTATTTCCGTTTGT 59.773 45.455 0.00 0.00 0.00 2.83
660 791 2.484742 AGCCCGTTCTTATTTCCGTT 57.515 45.000 0.00 0.00 0.00 4.44
662 793 2.207590 GGTAGCCCGTTCTTATTTCCG 58.792 52.381 0.00 0.00 0.00 4.30
674 805 2.285977 GGATAACAAACTGGTAGCCCG 58.714 52.381 0.00 0.00 40.09 6.13
686 817 2.040545 TCCTCGGGCTTTTGGATAACAA 59.959 45.455 0.00 0.00 37.28 2.83
687 818 1.631388 TCCTCGGGCTTTTGGATAACA 59.369 47.619 0.00 0.00 0.00 2.41
694 825 1.537202 CAAGTTCTCCTCGGGCTTTTG 59.463 52.381 0.00 0.00 0.00 2.44
721 852 2.420022 GACAATCCGACCCAGTCATTTG 59.580 50.000 0.00 0.00 32.09 2.32
747 878 2.637872 TCTCTCCGACCCAGTCATTTTT 59.362 45.455 0.00 0.00 32.09 1.94
748 879 2.234908 CTCTCTCCGACCCAGTCATTTT 59.765 50.000 0.00 0.00 32.09 1.82
749 880 1.827969 CTCTCTCCGACCCAGTCATTT 59.172 52.381 0.00 0.00 32.09 2.32
750 881 1.006043 TCTCTCTCCGACCCAGTCATT 59.994 52.381 0.00 0.00 32.09 2.57
751 882 0.626382 TCTCTCTCCGACCCAGTCAT 59.374 55.000 0.00 0.00 32.09 3.06
752 883 0.404426 TTCTCTCTCCGACCCAGTCA 59.596 55.000 0.00 0.00 32.09 3.41
753 884 1.546961 TTTCTCTCTCCGACCCAGTC 58.453 55.000 0.00 0.00 0.00 3.51
754 885 2.239681 ATTTCTCTCTCCGACCCAGT 57.760 50.000 0.00 0.00 0.00 4.00
755 886 2.480416 CGAATTTCTCTCTCCGACCCAG 60.480 54.545 0.00 0.00 0.00 4.45
756 887 1.476891 CGAATTTCTCTCTCCGACCCA 59.523 52.381 0.00 0.00 0.00 4.51
757 888 1.803252 GCGAATTTCTCTCTCCGACCC 60.803 57.143 0.00 0.00 0.00 4.46
758 889 1.562017 GCGAATTTCTCTCTCCGACC 58.438 55.000 0.00 0.00 0.00 4.79
759 890 1.562017 GGCGAATTTCTCTCTCCGAC 58.438 55.000 0.00 0.00 0.00 4.79
760 891 0.100682 CGGCGAATTTCTCTCTCCGA 59.899 55.000 0.00 0.00 37.79 4.55
761 892 0.872021 CCGGCGAATTTCTCTCTCCG 60.872 60.000 9.30 0.00 35.60 4.63
762 893 1.154814 GCCGGCGAATTTCTCTCTCC 61.155 60.000 12.58 0.00 0.00 3.71
763 894 0.460284 TGCCGGCGAATTTCTCTCTC 60.460 55.000 23.90 0.00 0.00 3.20
764 895 0.460987 CTGCCGGCGAATTTCTCTCT 60.461 55.000 23.90 0.00 0.00 3.10
765 896 1.432270 CCTGCCGGCGAATTTCTCTC 61.432 60.000 23.90 0.00 0.00 3.20
772 903 0.321653 GATATTCCCTGCCGGCGAAT 60.322 55.000 25.01 25.01 35.62 3.34
792 923 3.636282 AACCACAGAAATACGGCAAAC 57.364 42.857 0.00 0.00 0.00 2.93
804 935 4.756135 GGTTCCGTTGTATAAAACCACAGA 59.244 41.667 0.00 0.00 39.33 3.41
807 938 5.435820 TTGGTTCCGTTGTATAAAACCAC 57.564 39.130 6.51 0.00 46.62 4.16
812 943 5.067413 TGCTTGTTTGGTTCCGTTGTATAAA 59.933 36.000 0.00 0.00 0.00 1.40
814 945 4.135306 TGCTTGTTTGGTTCCGTTGTATA 58.865 39.130 0.00 0.00 0.00 1.47
815 946 2.952978 TGCTTGTTTGGTTCCGTTGTAT 59.047 40.909 0.00 0.00 0.00 2.29
853 1009 2.267642 CCTCGGATTTGTCGCCCA 59.732 61.111 0.00 0.00 0.00 5.36
890 1046 0.039256 TATATACGAACGCGGCCCAC 60.039 55.000 12.47 0.00 43.17 4.61
899 1055 6.368791 TGATGGATGCTTGCTTATATACGAAC 59.631 38.462 0.00 0.00 0.00 3.95
988 1172 1.250154 CCGGCCATTTCAGCAAAGGA 61.250 55.000 2.24 0.00 0.00 3.36
990 1174 1.446618 GCCGGCCATTTCAGCAAAG 60.447 57.895 18.11 0.00 0.00 2.77
1283 1470 1.808411 ATGCACTAGGGAACACAACG 58.192 50.000 0.00 0.00 0.00 4.10
1357 1544 3.179830 ACACAATCGAGACGAACATAGC 58.820 45.455 0.00 0.00 39.99 2.97
1365 1552 1.124297 CGTCCAAACACAATCGAGACG 59.876 52.381 4.10 4.10 39.51 4.18
1406 1793 5.464168 TGTGGAGTACGTAGTTAAGAAAGC 58.536 41.667 4.03 0.00 37.78 3.51
1420 1807 4.082895 ACTCACGTCATTACTGTGGAGTAC 60.083 45.833 0.00 0.00 34.23 2.73
1421 1808 4.077108 ACTCACGTCATTACTGTGGAGTA 58.923 43.478 0.00 0.00 33.67 2.59
1422 1809 2.891580 ACTCACGTCATTACTGTGGAGT 59.108 45.455 0.00 0.00 33.67 3.85
1423 1810 3.577649 ACTCACGTCATTACTGTGGAG 57.422 47.619 0.00 0.00 33.67 3.86
1424 1811 3.319689 TCAACTCACGTCATTACTGTGGA 59.680 43.478 0.00 0.00 33.67 4.02
1425 1812 3.649073 TCAACTCACGTCATTACTGTGG 58.351 45.455 0.00 0.00 33.67 4.17
1429 1816 6.046593 TCAACTTTCAACTCACGTCATTACT 58.953 36.000 0.00 0.00 0.00 2.24
1430 1817 6.281848 TCAACTTTCAACTCACGTCATTAC 57.718 37.500 0.00 0.00 0.00 1.89
1431 1818 6.912203 TTCAACTTTCAACTCACGTCATTA 57.088 33.333 0.00 0.00 0.00 1.90
1456 1847 7.971168 ACTACATTCTTTCAACTACATCTCGAG 59.029 37.037 5.93 5.93 0.00 4.04
1461 1852 9.856488 TCTACACTACATTCTTTCAACTACATC 57.144 33.333 0.00 0.00 0.00 3.06
1479 1870 7.712205 TCAACTGTATATAGCGTGTCTACACTA 59.288 37.037 11.22 0.00 44.34 2.74
1488 1879 5.896432 CGCTTTTTCAACTGTATATAGCGTG 59.104 40.000 0.00 0.00 42.64 5.34
1548 1966 8.390354 TCAAGTGTTTATCGATGCTATTTTCAG 58.610 33.333 8.54 0.00 0.00 3.02
1550 1968 9.722056 AATCAAGTGTTTATCGATGCTATTTTC 57.278 29.630 8.54 0.00 0.00 2.29
1562 1980 5.059710 GCGTGCTTCAAATCAAGTGTTTATC 59.940 40.000 0.00 0.00 0.00 1.75
1563 1981 4.917415 GCGTGCTTCAAATCAAGTGTTTAT 59.083 37.500 0.00 0.00 0.00 1.40
1565 1983 3.115554 GCGTGCTTCAAATCAAGTGTTT 58.884 40.909 0.00 0.00 0.00 2.83
1573 1991 4.615121 TGTATTTTTCGCGTGCTTCAAATC 59.385 37.500 5.77 0.00 0.00 2.17
1594 2861 9.826574 TTTAACTCTATCGCCTGTTATAATTGT 57.173 29.630 0.00 0.00 0.00 2.71
1598 2865 9.745880 CTTCTTTAACTCTATCGCCTGTTATAA 57.254 33.333 0.00 0.00 0.00 0.98
1599 2866 9.128404 TCTTCTTTAACTCTATCGCCTGTTATA 57.872 33.333 0.00 0.00 0.00 0.98
1600 2867 8.008513 TCTTCTTTAACTCTATCGCCTGTTAT 57.991 34.615 0.00 0.00 0.00 1.89
1601 2868 7.400599 TCTTCTTTAACTCTATCGCCTGTTA 57.599 36.000 0.00 0.00 0.00 2.41
1604 2871 5.176590 GCATCTTCTTTAACTCTATCGCCTG 59.823 44.000 0.00 0.00 0.00 4.85
1605 2872 5.163405 TGCATCTTCTTTAACTCTATCGCCT 60.163 40.000 0.00 0.00 0.00 5.52
1606 2873 5.050490 TGCATCTTCTTTAACTCTATCGCC 58.950 41.667 0.00 0.00 0.00 5.54
1607 2874 5.751028 AGTGCATCTTCTTTAACTCTATCGC 59.249 40.000 0.00 0.00 0.00 4.58
1608 2875 8.132362 ACTAGTGCATCTTCTTTAACTCTATCG 58.868 37.037 0.00 0.00 0.00 2.92
1618 2888 7.445402 ACAACAATGTACTAGTGCATCTTCTTT 59.555 33.333 24.25 8.00 38.24 2.52
1621 2891 6.368791 TGACAACAATGTACTAGTGCATCTTC 59.631 38.462 24.25 16.10 40.74 2.87
1628 2898 4.377022 GCCGTTGACAACAATGTACTAGTG 60.377 45.833 18.09 0.00 40.74 2.74
1629 2899 3.744426 GCCGTTGACAACAATGTACTAGT 59.256 43.478 18.09 0.00 40.74 2.57
1630 2900 3.181534 CGCCGTTGACAACAATGTACTAG 60.182 47.826 18.09 0.00 40.74 2.57
1631 2901 2.732500 CGCCGTTGACAACAATGTACTA 59.267 45.455 18.09 0.00 40.74 1.82
1632 2902 1.529438 CGCCGTTGACAACAATGTACT 59.471 47.619 18.09 0.00 40.74 2.73
1649 2930 0.733150 GTGGAAGGAAGTATTGCGCC 59.267 55.000 4.18 0.00 43.33 6.53
1657 2938 5.069914 GGGTAAAAACAATGTGGAAGGAAGT 59.930 40.000 0.00 0.00 0.00 3.01
1658 2939 5.510690 GGGGTAAAAACAATGTGGAAGGAAG 60.511 44.000 0.00 0.00 0.00 3.46
1661 2942 3.643792 TGGGGTAAAAACAATGTGGAAGG 59.356 43.478 0.00 0.00 0.00 3.46
1678 2959 4.215109 GTCATATAAAGTGGCAATGGGGT 58.785 43.478 0.00 0.00 0.00 4.95
1681 2962 5.065859 TCGTTGTCATATAAAGTGGCAATGG 59.934 40.000 11.37 1.91 44.31 3.16
1740 3021 6.101150 AGGGCCTTAATGGTTTTTCTTTTTCT 59.899 34.615 0.00 0.00 38.35 2.52
1741 3022 6.204688 CAGGGCCTTAATGGTTTTTCTTTTTC 59.795 38.462 1.32 0.00 38.35 2.29
1742 3023 6.061441 CAGGGCCTTAATGGTTTTTCTTTTT 58.939 36.000 1.32 0.00 38.35 1.94
1743 3024 5.620206 CAGGGCCTTAATGGTTTTTCTTTT 58.380 37.500 1.32 0.00 38.35 2.27
1744 3025 4.504864 GCAGGGCCTTAATGGTTTTTCTTT 60.505 41.667 1.32 0.00 38.35 2.52
1745 3026 3.007940 GCAGGGCCTTAATGGTTTTTCTT 59.992 43.478 1.32 0.00 38.35 2.52
1746 3027 2.567169 GCAGGGCCTTAATGGTTTTTCT 59.433 45.455 1.32 0.00 38.35 2.52
1748 3029 2.619931 AGCAGGGCCTTAATGGTTTTT 58.380 42.857 1.32 0.00 38.35 1.94
1749 3030 2.325661 AGCAGGGCCTTAATGGTTTT 57.674 45.000 1.32 0.00 38.35 2.43
1750 3031 2.325661 AAGCAGGGCCTTAATGGTTT 57.674 45.000 1.32 0.00 38.35 3.27
1751 3032 2.325661 AAAGCAGGGCCTTAATGGTT 57.674 45.000 1.32 2.03 38.35 3.67
1774 3069 3.297134 TGTCTCAGGACCTTTGCTTTT 57.703 42.857 0.00 0.00 41.47 2.27
1855 3151 1.544314 GCTGAAGTTGTGCTCCCTTCT 60.544 52.381 13.24 0.00 36.43 2.85
2011 3323 5.144159 ACAGGACAGGAGGACAGATAATA 57.856 43.478 0.00 0.00 0.00 0.98
2023 3335 2.606519 CGGGGGAACAGGACAGGA 60.607 66.667 0.00 0.00 0.00 3.86
2030 3342 1.301716 CAGTGTCACGGGGGAACAG 60.302 63.158 0.00 0.00 0.00 3.16
2031 3343 2.825982 CAGTGTCACGGGGGAACA 59.174 61.111 0.00 0.00 0.00 3.18
2033 3345 4.308458 CGCAGTGTCACGGGGGAA 62.308 66.667 11.56 0.00 0.00 3.97
2049 3361 4.921470 CTTGTGGTATTGTACAAGGACG 57.079 45.455 14.65 0.00 46.16 4.79
2113 3427 6.539826 TGTTATGACATTTGAGATCATTCGCT 59.460 34.615 0.00 0.00 34.86 4.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.