Multiple sequence alignment - TraesCS7D01G166500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G166500 chr7D 100.000 4865 0 0 1 4865 117241813 117246677 0.000000e+00 8985.0
1 TraesCS7D01G166500 chr7D 89.305 187 12 5 421 604 117242053 117242234 1.360000e-55 228.0
2 TraesCS7D01G166500 chr7D 89.305 187 12 5 241 422 117242233 117242416 1.360000e-55 228.0
3 TraesCS7D01G166500 chr7D 85.890 163 21 1 245 405 575898993 575899155 6.470000e-39 172.0
4 TraesCS7D01G166500 chr7D 83.432 169 23 4 425 589 575898993 575899160 8.430000e-33 152.0
5 TraesCS7D01G166500 chr7D 78.947 190 34 6 423 608 29801116 29801303 1.840000e-24 124.0
6 TraesCS7D01G166500 chr7A 100.000 1988 0 0 1270 3257 60001682 59999695 0.000000e+00 3672.0
7 TraesCS7D01G166500 chr7A 93.343 661 20 5 3256 3898 121398183 121398837 0.000000e+00 955.0
8 TraesCS7D01G166500 chr7A 86.163 860 52 30 421 1271 121397390 121398191 0.000000e+00 867.0
9 TraesCS7D01G166500 chr7A 90.799 413 27 8 3899 4301 121401802 121402213 4.280000e-150 542.0
10 TraesCS7D01G166500 chr7A 88.953 172 15 4 237 405 676361423 676361593 4.930000e-50 209.0
11 TraesCS7D01G166500 chr7A 85.165 182 24 3 422 601 676361431 676361611 2.990000e-42 183.0
12 TraesCS7D01G166500 chr7A 82.486 177 26 4 423 598 725443092 725442920 3.030000e-32 150.0
13 TraesCS7D01G166500 chr7A 94.872 78 3 1 4289 4366 121402236 121402312 2.380000e-23 121.0
14 TraesCS7D01G166500 chr7A 81.752 137 21 3 4692 4827 121403371 121403504 1.430000e-20 111.0
15 TraesCS7D01G166500 chr3B 100.000 1988 0 0 1270 3257 287351 285364 0.000000e+00 3672.0
16 TraesCS7D01G166500 chr3B 99.448 1991 9 1 1270 3258 739710066 739708076 0.000000e+00 3615.0
17 TraesCS7D01G166500 chr1B 99.549 1995 8 1 1270 3263 584096848 584094854 0.000000e+00 3633.0
18 TraesCS7D01G166500 chr1B 99.497 1989 10 0 1270 3258 151288741 151286753 0.000000e+00 3618.0
19 TraesCS7D01G166500 chr1B 78.333 180 29 7 3257 3431 659780357 659780183 1.850000e-19 108.0
20 TraesCS7D01G166500 chr5B 99.648 1988 6 1 1270 3257 684691926 684693912 0.000000e+00 3631.0
21 TraesCS7D01G166500 chr5B 83.621 116 17 2 3257 3371 122101422 122101308 1.850000e-19 108.0
22 TraesCS7D01G166500 chr2A 99.547 1988 9 0 1270 3257 34483297 34481310 0.000000e+00 3622.0
23 TraesCS7D01G166500 chr3A 99.448 1991 10 1 1267 3257 739827031 739829020 0.000000e+00 3615.0
24 TraesCS7D01G166500 chrUn 99.248 1994 14 1 1269 3262 160323643 160325635 0.000000e+00 3598.0
25 TraesCS7D01G166500 chrUn 98.844 173 2 0 1 173 162290971 162291143 4.730000e-80 309.0
26 TraesCS7D01G166500 chr7B 92.503 827 38 7 3256 4067 77432177 77432994 0.000000e+00 1162.0
27 TraesCS7D01G166500 chr7B 92.214 822 36 8 4068 4865 77432964 77433781 0.000000e+00 1138.0
28 TraesCS7D01G166500 chr7B 86.865 571 43 14 426 979 77429447 77430002 1.160000e-170 610.0
29 TraesCS7D01G166500 chr7B 85.022 227 23 6 174 390 77429373 77429598 2.280000e-53 220.0
30 TraesCS7D01G166500 chr7B 81.928 249 17 15 1046 1271 77431942 77432185 8.320000e-43 185.0
31 TraesCS7D01G166500 chr7B 85.030 167 19 2 244 405 72052479 72052314 1.080000e-36 165.0
32 TraesCS7D01G166500 chr7B 96.923 65 2 0 992 1056 77430158 77430222 5.150000e-20 110.0
33 TraesCS7D01G166500 chr5A 79.553 626 69 32 3256 3865 663379389 663379971 4.560000e-105 392.0
34 TraesCS7D01G166500 chr4D 77.866 628 76 36 3256 3865 483369441 483370023 1.010000e-86 331.0
35 TraesCS7D01G166500 chr4D 98.851 174 2 0 1 174 450930449 450930276 1.310000e-80 311.0
36 TraesCS7D01G166500 chr4D 94.118 204 12 0 3256 3459 483430842 483431045 1.310000e-80 311.0
37 TraesCS7D01G166500 chr4D 98.851 174 2 0 1 174 502436859 502437032 1.310000e-80 311.0
38 TraesCS7D01G166500 chr4D 89.372 207 22 0 3256 3462 381404248 381404042 1.340000e-65 261.0
39 TraesCS7D01G166500 chr4D 93.443 61 3 1 3589 3648 483431153 483431213 6.710000e-14 89.8
40 TraesCS7D01G166500 chr4D 100.000 30 0 0 1242 1271 483430821 483430850 6.800000e-04 56.5
41 TraesCS7D01G166500 chr4B 79.264 516 66 25 3256 3752 613754435 613753942 6.070000e-84 322.0
42 TraesCS7D01G166500 chr4B 83.230 161 25 2 962 1122 613754726 613754568 3.920000e-31 147.0
43 TraesCS7D01G166500 chr1D 99.422 173 1 0 1 173 181467408 181467580 1.020000e-81 315.0
44 TraesCS7D01G166500 chr1D 98.857 175 2 0 1 175 55863306 55863480 3.660000e-81 313.0
45 TraesCS7D01G166500 chr1D 98.315 178 2 1 1 178 220613565 220613741 1.310000e-80 311.0
46 TraesCS7D01G166500 chr1D 85.465 172 23 1 236 405 381017617 381017446 1.390000e-40 178.0
47 TraesCS7D01G166500 chr1D 85.987 157 21 1 244 399 121770690 121770846 3.010000e-37 167.0
48 TraesCS7D01G166500 chr1D 82.584 178 28 3 424 598 121770690 121770867 2.340000e-33 154.0
49 TraesCS7D01G166500 chr1D 82.682 179 24 4 423 597 263194717 263194892 8.430000e-33 152.0
50 TraesCS7D01G166500 chr3D 98.851 174 2 0 1 174 120601600 120601427 1.310000e-80 311.0
51 TraesCS7D01G166500 chr3D 98.851 174 2 0 1 174 435614331 435614158 1.310000e-80 311.0
52 TraesCS7D01G166500 chr5D 98.844 173 2 0 1 173 516308292 516308464 4.730000e-80 309.0
53 TraesCS7D01G166500 chr4A 85.311 177 20 4 234 405 319821318 319821493 1.390000e-40 178.0
54 TraesCS7D01G166500 chr4A 83.607 183 23 7 422 597 319821325 319821507 1.080000e-36 165.0
55 TraesCS7D01G166500 chr4A 81.667 180 26 4 423 599 542995655 542995830 5.080000e-30 143.0
56 TraesCS7D01G166500 chr6D 85.802 162 21 2 244 403 473361131 473360970 2.330000e-38 171.0
57 TraesCS7D01G166500 chr2B 84.337 166 23 3 425 590 760152357 760152519 5.040000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G166500 chr7D 117241813 117246677 4864 False 8985.000000 8985 100.0000 1 4865 1 chr7D.!!$F2 4864
1 TraesCS7D01G166500 chr7A 59999695 60001682 1987 True 3672.000000 3672 100.0000 1270 3257 1 chr7A.!!$R1 1987
2 TraesCS7D01G166500 chr7A 121397390 121403504 6114 False 519.200000 955 89.3858 421 4827 5 chr7A.!!$F1 4406
3 TraesCS7D01G166500 chr3B 285364 287351 1987 True 3672.000000 3672 100.0000 1270 3257 1 chr3B.!!$R1 1987
4 TraesCS7D01G166500 chr3B 739708076 739710066 1990 True 3615.000000 3615 99.4480 1270 3258 1 chr3B.!!$R2 1988
5 TraesCS7D01G166500 chr1B 584094854 584096848 1994 True 3633.000000 3633 99.5490 1270 3263 1 chr1B.!!$R2 1993
6 TraesCS7D01G166500 chr1B 151286753 151288741 1988 True 3618.000000 3618 99.4970 1270 3258 1 chr1B.!!$R1 1988
7 TraesCS7D01G166500 chr5B 684691926 684693912 1986 False 3631.000000 3631 99.6480 1270 3257 1 chr5B.!!$F1 1987
8 TraesCS7D01G166500 chr2A 34481310 34483297 1987 True 3622.000000 3622 99.5470 1270 3257 1 chr2A.!!$R1 1987
9 TraesCS7D01G166500 chr3A 739827031 739829020 1989 False 3615.000000 3615 99.4480 1267 3257 1 chr3A.!!$F1 1990
10 TraesCS7D01G166500 chrUn 160323643 160325635 1992 False 3598.000000 3598 99.2480 1269 3262 1 chrUn.!!$F1 1993
11 TraesCS7D01G166500 chr7B 77429373 77433781 4408 False 570.833333 1162 89.2425 174 4865 6 chr7B.!!$F1 4691
12 TraesCS7D01G166500 chr5A 663379389 663379971 582 False 392.000000 392 79.5530 3256 3865 1 chr5A.!!$F1 609
13 TraesCS7D01G166500 chr4D 483369441 483370023 582 False 331.000000 331 77.8660 3256 3865 1 chr4D.!!$F1 609
14 TraesCS7D01G166500 chr4B 613753942 613754726 784 True 234.500000 322 81.2470 962 3752 2 chr4B.!!$R1 2790

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
121 122 0.034059 ACTACATAGATGCGCTGGCC 59.966 55.0 9.73 0.00 38.85 5.36 F
835 841 0.035534 TTGAGGAAGCGGCATAAGCA 60.036 50.0 1.45 0.00 44.61 3.91 F
1159 3049 0.306840 TCGCGAGATGTTAGCTACCG 59.693 55.0 3.71 0.00 33.31 4.02 F
1221 3140 0.806868 AATGGAAGTGACGCATGCTG 59.193 50.0 17.13 11.87 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1122 3012 0.248702 GAGTAGTACCAGCTCGCTGC 60.249 60.000 13.25 0.48 42.35 5.25 R
3540 5479 4.371417 ACGGCAGGGACGGAGGTA 62.371 66.667 0.00 0.00 39.02 3.08 R
3819 5818 1.437986 CCATTCCTCGTCGGACTCC 59.562 63.158 6.57 0.00 42.97 3.85 R
3889 5888 2.547007 CCACGTACATGTGACTGAACCA 60.547 50.000 9.11 0.00 42.55 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.993937 TGTTACCGGATGATGTTTCCC 58.006 47.619 9.46 0.00 0.00 3.97
22 23 1.937899 GTTACCGGATGATGTTTCCCG 59.062 52.381 9.46 0.00 41.47 5.14
24 25 4.141144 CGGATGATGTTTCCCGGG 57.859 61.111 16.85 16.85 38.42 5.73
25 26 1.525995 CGGATGATGTTTCCCGGGG 60.526 63.158 23.50 6.77 38.42 5.73
26 27 1.828224 GGATGATGTTTCCCGGGGC 60.828 63.158 23.50 12.21 0.00 5.80
27 28 1.828224 GATGATGTTTCCCGGGGCC 60.828 63.158 23.50 9.45 0.00 5.80
28 29 3.373932 ATGATGTTTCCCGGGGCCC 62.374 63.158 23.50 15.76 0.00 5.80
39 40 3.081409 GGGGCCCGAAGCTGTCTA 61.081 66.667 17.79 0.00 43.05 2.59
40 41 2.666098 GGGGCCCGAAGCTGTCTAA 61.666 63.158 17.79 0.00 43.05 2.10
41 42 1.298667 GGGCCCGAAGCTGTCTAAA 59.701 57.895 5.69 0.00 43.05 1.85
42 43 1.025113 GGGCCCGAAGCTGTCTAAAC 61.025 60.000 5.69 0.00 43.05 2.01
43 44 1.025113 GGCCCGAAGCTGTCTAAACC 61.025 60.000 0.00 0.00 43.05 3.27
44 45 1.025113 GCCCGAAGCTGTCTAAACCC 61.025 60.000 0.00 0.00 38.99 4.11
45 46 0.613777 CCCGAAGCTGTCTAAACCCT 59.386 55.000 0.00 0.00 0.00 4.34
46 47 1.003233 CCCGAAGCTGTCTAAACCCTT 59.997 52.381 0.00 0.00 0.00 3.95
47 48 2.076863 CCGAAGCTGTCTAAACCCTTG 58.923 52.381 0.00 0.00 0.00 3.61
48 49 2.550208 CCGAAGCTGTCTAAACCCTTGT 60.550 50.000 0.00 0.00 0.00 3.16
49 50 2.737252 CGAAGCTGTCTAAACCCTTGTC 59.263 50.000 0.00 0.00 0.00 3.18
50 51 3.555168 CGAAGCTGTCTAAACCCTTGTCT 60.555 47.826 0.00 0.00 0.00 3.41
51 52 4.390264 GAAGCTGTCTAAACCCTTGTCTT 58.610 43.478 0.00 0.00 0.00 3.01
52 53 3.744660 AGCTGTCTAAACCCTTGTCTTG 58.255 45.455 0.00 0.00 0.00 3.02
53 54 3.136626 AGCTGTCTAAACCCTTGTCTTGT 59.863 43.478 0.00 0.00 0.00 3.16
54 55 3.251004 GCTGTCTAAACCCTTGTCTTGTG 59.749 47.826 0.00 0.00 0.00 3.33
55 56 3.211045 TGTCTAAACCCTTGTCTTGTGC 58.789 45.455 0.00 0.00 0.00 4.57
56 57 2.223377 GTCTAAACCCTTGTCTTGTGCG 59.777 50.000 0.00 0.00 0.00 5.34
57 58 2.158871 TCTAAACCCTTGTCTTGTGCGT 60.159 45.455 0.00 0.00 0.00 5.24
58 59 1.470051 AAACCCTTGTCTTGTGCGTT 58.530 45.000 0.00 0.00 0.00 4.84
59 60 0.738389 AACCCTTGTCTTGTGCGTTG 59.262 50.000 0.00 0.00 0.00 4.10
60 61 0.107410 ACCCTTGTCTTGTGCGTTGA 60.107 50.000 0.00 0.00 0.00 3.18
61 62 1.238439 CCCTTGTCTTGTGCGTTGAT 58.762 50.000 0.00 0.00 0.00 2.57
62 63 1.197721 CCCTTGTCTTGTGCGTTGATC 59.802 52.381 0.00 0.00 0.00 2.92
63 64 1.197721 CCTTGTCTTGTGCGTTGATCC 59.802 52.381 0.00 0.00 0.00 3.36
64 65 0.865111 TTGTCTTGTGCGTTGATCCG 59.135 50.000 0.00 0.00 0.00 4.18
81 82 2.107953 GCCCTGCGTCTCTCATCC 59.892 66.667 0.00 0.00 0.00 3.51
82 83 2.818132 CCCTGCGTCTCTCATCCC 59.182 66.667 0.00 0.00 0.00 3.85
83 84 2.060383 CCCTGCGTCTCTCATCCCA 61.060 63.158 0.00 0.00 0.00 4.37
84 85 1.440893 CCTGCGTCTCTCATCCCAG 59.559 63.158 0.00 0.00 0.00 4.45
85 86 1.326213 CCTGCGTCTCTCATCCCAGT 61.326 60.000 0.00 0.00 0.00 4.00
86 87 0.102120 CTGCGTCTCTCATCCCAGTC 59.898 60.000 0.00 0.00 0.00 3.51
87 88 0.611896 TGCGTCTCTCATCCCAGTCA 60.612 55.000 0.00 0.00 0.00 3.41
88 89 0.532573 GCGTCTCTCATCCCAGTCAA 59.467 55.000 0.00 0.00 0.00 3.18
89 90 1.737363 GCGTCTCTCATCCCAGTCAAC 60.737 57.143 0.00 0.00 0.00 3.18
90 91 1.134965 CGTCTCTCATCCCAGTCAACC 60.135 57.143 0.00 0.00 0.00 3.77
91 92 1.208293 GTCTCTCATCCCAGTCAACCC 59.792 57.143 0.00 0.00 0.00 4.11
92 93 0.543749 CTCTCATCCCAGTCAACCCC 59.456 60.000 0.00 0.00 0.00 4.95
93 94 0.119155 TCTCATCCCAGTCAACCCCT 59.881 55.000 0.00 0.00 0.00 4.79
94 95 0.543749 CTCATCCCAGTCAACCCCTC 59.456 60.000 0.00 0.00 0.00 4.30
95 96 0.119155 TCATCCCAGTCAACCCCTCT 59.881 55.000 0.00 0.00 0.00 3.69
96 97 0.543749 CATCCCAGTCAACCCCTCTC 59.456 60.000 0.00 0.00 0.00 3.20
97 98 0.119155 ATCCCAGTCAACCCCTCTCA 59.881 55.000 0.00 0.00 0.00 3.27
98 99 0.104672 TCCCAGTCAACCCCTCTCAA 60.105 55.000 0.00 0.00 0.00 3.02
99 100 0.326264 CCCAGTCAACCCCTCTCAAG 59.674 60.000 0.00 0.00 0.00 3.02
100 101 0.322008 CCAGTCAACCCCTCTCAAGC 60.322 60.000 0.00 0.00 0.00 4.01
101 102 0.689623 CAGTCAACCCCTCTCAAGCT 59.310 55.000 0.00 0.00 0.00 3.74
102 103 1.902508 CAGTCAACCCCTCTCAAGCTA 59.097 52.381 0.00 0.00 0.00 3.32
103 104 1.903183 AGTCAACCCCTCTCAAGCTAC 59.097 52.381 0.00 0.00 0.00 3.58
104 105 1.903183 GTCAACCCCTCTCAAGCTACT 59.097 52.381 0.00 0.00 0.00 2.57
105 106 3.097614 GTCAACCCCTCTCAAGCTACTA 58.902 50.000 0.00 0.00 0.00 1.82
106 107 3.097614 TCAACCCCTCTCAAGCTACTAC 58.902 50.000 0.00 0.00 0.00 2.73
107 108 2.832129 CAACCCCTCTCAAGCTACTACA 59.168 50.000 0.00 0.00 0.00 2.74
108 109 3.406512 ACCCCTCTCAAGCTACTACAT 57.593 47.619 0.00 0.00 0.00 2.29
109 110 4.537945 ACCCCTCTCAAGCTACTACATA 57.462 45.455 0.00 0.00 0.00 2.29
110 111 4.475345 ACCCCTCTCAAGCTACTACATAG 58.525 47.826 0.00 0.00 0.00 2.23
111 112 4.168283 ACCCCTCTCAAGCTACTACATAGA 59.832 45.833 0.00 0.00 31.83 1.98
112 113 5.162925 ACCCCTCTCAAGCTACTACATAGAT 60.163 44.000 0.00 0.00 31.83 1.98
113 114 5.184864 CCCCTCTCAAGCTACTACATAGATG 59.815 48.000 0.00 0.00 31.83 2.90
114 115 5.336372 CCCTCTCAAGCTACTACATAGATGC 60.336 48.000 0.00 0.00 31.83 3.91
115 116 5.363979 TCTCAAGCTACTACATAGATGCG 57.636 43.478 0.00 0.00 31.83 4.73
116 117 3.902150 TCAAGCTACTACATAGATGCGC 58.098 45.455 0.00 0.00 31.83 6.09
117 118 3.570125 TCAAGCTACTACATAGATGCGCT 59.430 43.478 9.73 0.00 31.83 5.92
118 119 3.567576 AGCTACTACATAGATGCGCTG 57.432 47.619 9.73 0.00 31.83 5.18
119 120 2.230025 AGCTACTACATAGATGCGCTGG 59.770 50.000 9.73 0.00 31.83 4.85
120 121 2.600731 CTACTACATAGATGCGCTGGC 58.399 52.381 9.73 0.00 34.37 4.85
121 122 0.034059 ACTACATAGATGCGCTGGCC 59.966 55.000 9.73 0.00 38.85 5.36
122 123 0.319728 CTACATAGATGCGCTGGCCT 59.680 55.000 9.73 2.72 38.85 5.19
123 124 0.318441 TACATAGATGCGCTGGCCTC 59.682 55.000 9.73 0.00 38.85 4.70
124 125 1.070275 CATAGATGCGCTGGCCTCA 59.930 57.895 9.73 0.00 36.40 3.86
125 126 1.070445 ATAGATGCGCTGGCCTCAC 59.930 57.895 9.73 0.00 36.40 3.51
126 127 2.705934 ATAGATGCGCTGGCCTCACG 62.706 60.000 9.73 6.25 36.40 4.35
127 128 4.819761 GATGCGCTGGCCTCACGA 62.820 66.667 9.73 2.94 38.85 4.35
130 131 4.129737 GCGCTGGCCTCACGACTA 62.130 66.667 15.32 0.00 0.00 2.59
131 132 2.571757 CGCTGGCCTCACGACTAA 59.428 61.111 3.32 0.00 0.00 2.24
132 133 1.517257 CGCTGGCCTCACGACTAAG 60.517 63.158 3.32 0.00 0.00 2.18
133 134 1.592223 GCTGGCCTCACGACTAAGT 59.408 57.895 3.32 0.00 0.00 2.24
134 135 0.458716 GCTGGCCTCACGACTAAGTC 60.459 60.000 3.32 0.00 0.00 3.01
135 136 0.173708 CTGGCCTCACGACTAAGTCC 59.826 60.000 3.32 0.00 0.00 3.85
136 137 0.251653 TGGCCTCACGACTAAGTCCT 60.252 55.000 3.32 0.00 0.00 3.85
137 138 0.456628 GGCCTCACGACTAAGTCCTC 59.543 60.000 0.00 0.00 0.00 3.71
138 139 1.174783 GCCTCACGACTAAGTCCTCA 58.825 55.000 0.00 0.00 0.00 3.86
139 140 1.751924 GCCTCACGACTAAGTCCTCAT 59.248 52.381 0.00 0.00 0.00 2.90
140 141 2.480416 GCCTCACGACTAAGTCCTCATG 60.480 54.545 0.00 0.00 0.00 3.07
141 142 2.480416 CCTCACGACTAAGTCCTCATGC 60.480 54.545 0.00 0.00 0.00 4.06
142 143 2.425312 CTCACGACTAAGTCCTCATGCT 59.575 50.000 0.00 0.00 0.00 3.79
143 144 3.617284 TCACGACTAAGTCCTCATGCTA 58.383 45.455 0.00 0.00 0.00 3.49
144 145 4.014406 TCACGACTAAGTCCTCATGCTAA 58.986 43.478 0.00 0.00 0.00 3.09
145 146 4.096532 TCACGACTAAGTCCTCATGCTAAG 59.903 45.833 0.00 0.00 0.00 2.18
146 147 3.381908 ACGACTAAGTCCTCATGCTAAGG 59.618 47.826 0.00 0.00 35.05 2.69
147 148 3.632604 CGACTAAGTCCTCATGCTAAGGA 59.367 47.826 0.00 0.00 40.67 3.36
154 155 2.103771 TCCTCATGCTAAGGACATCTGC 59.896 50.000 0.00 0.00 38.01 4.26
155 156 2.492012 CTCATGCTAAGGACATCTGCC 58.508 52.381 0.00 0.00 0.00 4.85
156 157 1.202568 TCATGCTAAGGACATCTGCCG 60.203 52.381 0.00 0.00 0.00 5.69
157 158 0.833287 ATGCTAAGGACATCTGCCGT 59.167 50.000 0.00 0.00 0.00 5.68
158 159 0.108186 TGCTAAGGACATCTGCCGTG 60.108 55.000 0.00 0.00 0.00 4.94
159 160 0.175760 GCTAAGGACATCTGCCGTGA 59.824 55.000 0.00 0.00 0.00 4.35
160 161 1.927895 CTAAGGACATCTGCCGTGAC 58.072 55.000 0.00 0.00 0.00 3.67
161 162 1.204704 CTAAGGACATCTGCCGTGACA 59.795 52.381 0.00 0.00 0.00 3.58
162 163 0.396435 AAGGACATCTGCCGTGACAA 59.604 50.000 0.00 0.00 0.00 3.18
163 164 0.615331 AGGACATCTGCCGTGACAAT 59.385 50.000 0.00 0.00 0.00 2.71
164 165 1.003580 AGGACATCTGCCGTGACAATT 59.996 47.619 0.00 0.00 0.00 2.32
165 166 1.398390 GGACATCTGCCGTGACAATTC 59.602 52.381 0.00 0.00 0.00 2.17
166 167 1.398390 GACATCTGCCGTGACAATTCC 59.602 52.381 0.00 0.00 0.00 3.01
167 168 1.271325 ACATCTGCCGTGACAATTCCA 60.271 47.619 0.00 0.00 0.00 3.53
168 169 1.131126 CATCTGCCGTGACAATTCCAC 59.869 52.381 0.00 0.00 0.00 4.02
192 193 5.949787 CGACAACGTGAAAAATTATCCTACG 59.050 40.000 0.00 0.00 36.28 3.51
216 217 7.130917 CGTAGTAGAATATGAAGCTAACGTGT 58.869 38.462 0.00 0.00 0.00 4.49
223 224 8.604035 AGAATATGAAGCTAACGTGTGTATTTG 58.396 33.333 0.00 0.00 0.00 2.32
226 227 7.843490 ATGAAGCTAACGTGTGTATTTGTAT 57.157 32.000 0.00 0.00 0.00 2.29
227 228 7.056002 TGAAGCTAACGTGTGTATTTGTATG 57.944 36.000 0.00 0.00 0.00 2.39
236 239 5.295787 CGTGTGTATTTGTATGTGCCCTTAT 59.704 40.000 0.00 0.00 0.00 1.73
284 287 5.927115 GTCGACTGAGATTTAACCAAGTCTT 59.073 40.000 8.70 0.00 31.40 3.01
286 289 7.273815 GTCGACTGAGATTTAACCAAGTCTTAG 59.726 40.741 8.70 1.73 38.97 2.18
313 316 5.798132 AGTGACATAACATGCAAGAGAGAA 58.202 37.500 0.00 0.00 0.00 2.87
354 357 6.993786 TTTTGCACGGATCTTAATGTATGA 57.006 33.333 0.00 0.00 0.00 2.15
355 358 7.566760 TTTTGCACGGATCTTAATGTATGAT 57.433 32.000 0.00 0.00 0.00 2.45
356 359 6.785488 TTGCACGGATCTTAATGTATGATC 57.215 37.500 0.00 0.00 38.15 2.92
357 360 6.101650 TGCACGGATCTTAATGTATGATCT 57.898 37.500 9.65 0.00 38.62 2.75
358 361 6.159293 TGCACGGATCTTAATGTATGATCTC 58.841 40.000 9.65 2.59 38.62 2.75
359 362 6.159293 GCACGGATCTTAATGTATGATCTCA 58.841 40.000 9.65 0.00 38.62 3.27
360 363 6.090088 GCACGGATCTTAATGTATGATCTCAC 59.910 42.308 9.65 0.00 38.62 3.51
361 364 7.374272 CACGGATCTTAATGTATGATCTCACT 58.626 38.462 9.65 0.00 38.62 3.41
362 365 7.328005 CACGGATCTTAATGTATGATCTCACTG 59.672 40.741 9.65 0.00 38.62 3.66
363 366 7.231519 ACGGATCTTAATGTATGATCTCACTGA 59.768 37.037 9.65 0.00 38.62 3.41
364 367 8.249638 CGGATCTTAATGTATGATCTCACTGAT 58.750 37.037 9.65 0.00 38.62 2.90
374 377 9.231297 TGTATGATCTCACTGATATAACATCGA 57.769 33.333 0.00 0.00 35.14 3.59
375 378 9.497030 GTATGATCTCACTGATATAACATCGAC 57.503 37.037 0.00 0.00 35.14 4.20
376 379 7.751768 TGATCTCACTGATATAACATCGACT 57.248 36.000 0.00 0.00 35.14 4.18
377 380 8.848474 TGATCTCACTGATATAACATCGACTA 57.152 34.615 0.00 0.00 35.14 2.59
378 381 9.284968 TGATCTCACTGATATAACATCGACTAA 57.715 33.333 0.00 0.00 35.14 2.24
379 382 9.767684 GATCTCACTGATATAACATCGACTAAG 57.232 37.037 0.00 0.00 35.14 2.18
380 383 8.904099 TCTCACTGATATAACATCGACTAAGA 57.096 34.615 0.00 0.00 0.00 2.10
381 384 8.775527 TCTCACTGATATAACATCGACTAAGAC 58.224 37.037 0.00 0.00 0.00 3.01
382 385 8.678593 TCACTGATATAACATCGACTAAGACT 57.321 34.615 0.00 0.00 0.00 3.24
383 386 9.121658 TCACTGATATAACATCGACTAAGACTT 57.878 33.333 0.00 0.00 0.00 3.01
393 396 9.877178 AACATCGACTAAGACTTAATGAAATCT 57.123 29.630 10.30 0.00 0.00 2.40
394 397 9.522804 ACATCGACTAAGACTTAATGAAATCTC 57.477 33.333 10.30 0.00 0.00 2.75
395 398 9.521503 CATCGACTAAGACTTAATGAAATCTCA 57.478 33.333 0.00 0.00 35.56 3.27
396 399 9.743057 ATCGACTAAGACTTAATGAAATCTCAG 57.257 33.333 0.00 0.00 34.23 3.35
397 400 8.740906 TCGACTAAGACTTAATGAAATCTCAGT 58.259 33.333 0.00 0.00 34.23 3.41
398 401 9.015577 CGACTAAGACTTAATGAAATCTCAGTC 57.984 37.037 0.00 0.00 34.23 3.51
399 402 9.862371 GACTAAGACTTAATGAAATCTCAGTCA 57.138 33.333 0.30 0.00 34.23 3.41
403 406 8.545229 AGACTTAATGAAATCTCAGTCAACTG 57.455 34.615 3.69 3.69 45.08 3.16
420 423 8.826710 CAGTCAACTGATTAAAAGACTGTTACA 58.173 33.333 4.05 0.00 46.59 2.41
421 424 9.391006 AGTCAACTGATTAAAAGACTGTTACAA 57.609 29.630 0.00 0.00 35.24 2.41
422 425 9.651718 GTCAACTGATTAAAAGACTGTTACAAG 57.348 33.333 0.00 0.00 0.00 3.16
423 426 8.836413 TCAACTGATTAAAAGACTGTTACAAGG 58.164 33.333 0.00 0.00 0.00 3.61
424 427 7.745620 ACTGATTAAAAGACTGTTACAAGGG 57.254 36.000 0.00 0.00 0.00 3.95
425 428 7.287810 ACTGATTAAAAGACTGTTACAAGGGT 58.712 34.615 0.00 0.00 0.00 4.34
426 429 7.228706 ACTGATTAAAAGACTGTTACAAGGGTG 59.771 37.037 0.00 0.00 0.00 4.61
427 430 7.057894 TGATTAAAAGACTGTTACAAGGGTGT 58.942 34.615 0.00 0.00 42.09 4.16
428 431 8.212312 TGATTAAAAGACTGTTACAAGGGTGTA 58.788 33.333 0.00 0.00 39.30 2.90
429 432 8.617290 ATTAAAAGACTGTTACAAGGGTGTAG 57.383 34.615 0.00 0.00 41.25 2.74
430 433 5.625568 AAAGACTGTTACAAGGGTGTAGT 57.374 39.130 0.00 0.00 41.25 2.73
440 443 3.833070 ACAAGGGTGTAGTTAGGTCTCAG 59.167 47.826 0.00 0.00 35.72 3.35
491 494 5.640783 TCAAGTGACATAACATGCAAGAGAG 59.359 40.000 0.00 0.00 0.00 3.20
493 496 5.417811 AGTGACATAACATGCAAGAGAGAG 58.582 41.667 0.00 0.00 0.00 3.20
495 498 5.871524 GTGACATAACATGCAAGAGAGAGAA 59.128 40.000 0.00 0.00 0.00 2.87
498 501 7.609146 TGACATAACATGCAAGAGAGAGAAAAT 59.391 33.333 0.00 0.00 0.00 1.82
503 506 7.992754 ACATGCAAGAGAGAGAAAATAAACT 57.007 32.000 0.00 0.00 0.00 2.66
504 507 7.814642 ACATGCAAGAGAGAGAAAATAAACTG 58.185 34.615 0.00 0.00 0.00 3.16
505 508 7.663081 ACATGCAAGAGAGAGAAAATAAACTGA 59.337 33.333 0.00 0.00 0.00 3.41
547 553 9.223099 TCTTAACGTATGATCTCACGGATATAA 57.777 33.333 19.21 12.79 42.35 0.98
569 575 3.058016 ACATCGACCGAGACTTAACGAAA 60.058 43.478 0.00 0.00 33.77 3.46
574 580 4.670992 CGACCGAGACTTAACGAAATCTCA 60.671 45.833 0.00 0.00 37.97 3.27
575 581 4.734917 ACCGAGACTTAACGAAATCTCAG 58.265 43.478 0.00 0.00 37.97 3.35
576 582 4.217983 ACCGAGACTTAACGAAATCTCAGT 59.782 41.667 0.00 0.00 37.97 3.41
577 583 4.559251 CCGAGACTTAACGAAATCTCAGTG 59.441 45.833 0.00 0.00 37.97 3.66
578 584 5.391449 CGAGACTTAACGAAATCTCAGTGA 58.609 41.667 0.00 0.00 37.97 3.41
580 586 6.183359 CGAGACTTAACGAAATCTCAGTGAAC 60.183 42.308 0.00 0.00 37.97 3.18
581 587 6.750148 AGACTTAACGAAATCTCAGTGAACT 58.250 36.000 0.00 0.00 0.00 3.01
582 588 6.642950 AGACTTAACGAAATCTCAGTGAACTG 59.357 38.462 3.98 3.98 45.08 3.16
631 637 3.620488 TGCAATGGAGGGAGTAATGTTC 58.380 45.455 0.00 0.00 0.00 3.18
632 638 3.010027 TGCAATGGAGGGAGTAATGTTCA 59.990 43.478 0.00 0.00 0.00 3.18
633 639 4.210331 GCAATGGAGGGAGTAATGTTCAT 58.790 43.478 0.00 0.00 0.00 2.57
644 650 3.758554 AGTAATGTTCATGCCACTTGGAC 59.241 43.478 0.00 0.00 37.39 4.02
787 793 2.877975 ATGCACACATGGAAGCCTC 58.122 52.632 0.00 0.00 34.35 4.70
788 794 0.330604 ATGCACACATGGAAGCCTCT 59.669 50.000 0.00 0.00 34.35 3.69
825 831 4.393371 GTCCATCTAACACTTTGAGGAAGC 59.607 45.833 0.00 0.00 39.04 3.86
826 832 3.372206 CCATCTAACACTTTGAGGAAGCG 59.628 47.826 0.00 0.00 39.04 4.68
829 835 0.465460 AACACTTTGAGGAAGCGGCA 60.465 50.000 1.45 0.00 39.04 5.69
830 836 0.250901 ACACTTTGAGGAAGCGGCAT 60.251 50.000 1.45 0.00 39.04 4.40
831 837 1.003118 ACACTTTGAGGAAGCGGCATA 59.997 47.619 1.45 0.00 39.04 3.14
832 838 2.083774 CACTTTGAGGAAGCGGCATAA 58.916 47.619 1.45 0.00 39.04 1.90
833 839 2.096496 CACTTTGAGGAAGCGGCATAAG 59.904 50.000 1.45 0.00 39.04 1.73
835 841 0.035534 TTGAGGAAGCGGCATAAGCA 60.036 50.000 1.45 0.00 44.61 3.91
837 843 1.153086 AGGAAGCGGCATAAGCAGG 60.153 57.895 1.45 0.00 44.61 4.85
838 844 2.718107 GAAGCGGCATAAGCAGGC 59.282 61.111 1.45 0.00 44.61 4.85
844 850 4.532490 GCATAAGCAGGCCACGTA 57.468 55.556 5.01 0.00 41.58 3.57
845 851 2.775351 GCATAAGCAGGCCACGTAA 58.225 52.632 5.01 0.00 41.58 3.18
846 852 1.091537 GCATAAGCAGGCCACGTAAA 58.908 50.000 5.01 0.00 41.58 2.01
847 853 1.064060 GCATAAGCAGGCCACGTAAAG 59.936 52.381 5.01 0.00 41.58 1.85
849 855 5.557237 GCATAAGCAGGCCACGTAAAGTG 62.557 52.174 5.01 0.00 44.90 3.16
876 887 2.624437 CTAAGCCGGCCACGTAGTCC 62.624 65.000 26.15 0.00 41.61 3.85
906 917 2.774687 GCCGGTGTATAAATACCCCAG 58.225 52.381 1.90 0.00 33.44 4.45
908 919 2.105134 CCGGTGTATAAATACCCCAGCA 59.895 50.000 0.00 0.00 33.44 4.41
910 921 3.562557 CGGTGTATAAATACCCCAGCAAC 59.437 47.826 3.10 0.00 33.44 4.17
973 986 2.160615 CACACGGCGAGATAGAGATAGG 59.839 54.545 16.62 0.00 0.00 2.57
979 992 3.541632 GCGAGATAGAGATAGGGAGAGG 58.458 54.545 0.00 0.00 0.00 3.69
981 994 3.118038 CGAGATAGAGATAGGGAGAGGGG 60.118 56.522 0.00 0.00 0.00 4.79
982 995 3.856206 GAGATAGAGATAGGGAGAGGGGT 59.144 52.174 0.00 0.00 0.00 4.95
983 996 4.264748 AGATAGAGATAGGGAGAGGGGTT 58.735 47.826 0.00 0.00 0.00 4.11
997 1157 0.689412 GGGGTTGAGAGAGGGAGAGG 60.689 65.000 0.00 0.00 0.00 3.69
1137 3027 4.135153 CCGCAGCGAGCTGGTACT 62.135 66.667 24.25 0.00 43.77 2.73
1138 3028 2.771639 CCGCAGCGAGCTGGTACTA 61.772 63.158 24.25 0.00 43.77 1.82
1139 3029 1.586564 CGCAGCGAGCTGGTACTAC 60.587 63.158 24.25 7.50 43.77 2.73
1140 3030 1.810532 GCAGCGAGCTGGTACTACT 59.189 57.895 24.25 0.00 43.77 2.57
1144 3034 1.011019 CGAGCTGGTACTACTCGCG 60.011 63.158 15.89 0.00 44.24 5.87
1145 3035 1.426816 CGAGCTGGTACTACTCGCGA 61.427 60.000 9.26 9.26 44.24 5.87
1149 3039 1.334239 GCTGGTACTACTCGCGAGATG 60.334 57.143 40.58 30.68 40.84 2.90
1150 3040 1.941294 CTGGTACTACTCGCGAGATGT 59.059 52.381 40.58 33.82 40.84 3.06
1153 3043 3.558829 TGGTACTACTCGCGAGATGTTAG 59.441 47.826 40.58 30.35 40.84 2.34
1154 3044 2.759538 ACTACTCGCGAGATGTTAGC 57.240 50.000 40.58 0.00 40.84 3.09
1155 3045 2.290464 ACTACTCGCGAGATGTTAGCT 58.710 47.619 40.58 19.13 40.84 3.32
1156 3046 3.464907 ACTACTCGCGAGATGTTAGCTA 58.535 45.455 40.58 19.22 40.84 3.32
1157 3047 2.759538 ACTCGCGAGATGTTAGCTAC 57.240 50.000 40.58 0.00 40.84 3.58
1158 3048 1.334243 ACTCGCGAGATGTTAGCTACC 59.666 52.381 40.58 0.00 40.84 3.18
1159 3049 0.306840 TCGCGAGATGTTAGCTACCG 59.693 55.000 3.71 0.00 33.31 4.02
1164 3054 2.552743 CGAGATGTTAGCTACCGATCCA 59.447 50.000 0.00 0.00 0.00 3.41
1166 3056 4.673061 CGAGATGTTAGCTACCGATCCATC 60.673 50.000 0.00 0.00 0.00 3.51
1194 3106 3.118408 CCGTTCTGGTTCTATCCAATGGA 60.118 47.826 3.67 3.67 37.01 3.41
1221 3140 0.806868 AATGGAAGTGACGCATGCTG 59.193 50.000 17.13 11.87 0.00 4.41
1222 3141 1.651240 ATGGAAGTGACGCATGCTGC 61.651 55.000 17.13 7.93 40.69 5.25
1223 3142 2.037136 GGAAGTGACGCATGCTGCT 61.037 57.895 17.13 5.29 42.25 4.24
1241 3160 4.036498 GCTGCTAACTGAATGAATCTGCAT 59.964 41.667 0.00 0.00 0.00 3.96
1242 3161 5.494632 TGCTAACTGAATGAATCTGCATG 57.505 39.130 0.00 0.00 0.00 4.06
1243 3162 4.201980 TGCTAACTGAATGAATCTGCATGC 60.202 41.667 11.82 11.82 0.00 4.06
1244 3163 4.201980 GCTAACTGAATGAATCTGCATGCA 60.202 41.667 21.29 21.29 32.90 3.96
1246 3165 3.355626 CTGAATGAATCTGCATGCAGG 57.644 47.619 39.72 24.74 44.72 4.85
1247 3166 2.688446 CTGAATGAATCTGCATGCAGGT 59.312 45.455 39.72 34.49 44.72 4.00
1248 3167 2.686405 TGAATGAATCTGCATGCAGGTC 59.314 45.455 39.72 34.31 43.75 3.85
1249 3168 2.730934 ATGAATCTGCATGCAGGTCT 57.269 45.000 39.72 26.21 43.75 3.85
1250 3169 1.746470 TGAATCTGCATGCAGGTCTG 58.254 50.000 39.72 20.91 43.75 3.51
3564 5503 3.083997 GTCCCTGCCGTCCTCCAT 61.084 66.667 0.00 0.00 0.00 3.41
3714 5710 2.316108 GGAGGAGATCAAGAGGGAGAC 58.684 57.143 0.00 0.00 0.00 3.36
3805 5804 2.615262 GATGGACGACGTGAGAGCCC 62.615 65.000 4.58 0.00 0.00 5.19
3889 5888 1.673400 CCTCTCACACGTGATCGATCT 59.327 52.381 25.01 3.30 39.13 2.75
3954 8917 7.357303 GCTTTTCGAAAAGGAAACTGTATGTA 58.643 34.615 38.06 9.57 44.24 2.29
3956 8919 9.329913 CTTTTCGAAAAGGAAACTGTATGTATG 57.670 33.333 33.40 10.49 42.68 2.39
3962 8925 6.992063 AAGGAAACTGTATGTATGCTTGAG 57.008 37.500 0.00 0.00 42.68 3.02
3982 8945 2.834689 GCAGTGTGCATACGTACAAAC 58.165 47.619 8.03 0.00 44.26 2.93
4135 9108 0.592754 GTAAGCTAGCGTCGCTCCTG 60.593 60.000 25.50 15.86 40.44 3.86
4180 9153 4.708421 AGAAAAAGTCATGTGATGGATGGG 59.292 41.667 0.00 0.00 0.00 4.00
4182 9155 0.921166 AGTCATGTGATGGATGGGCA 59.079 50.000 0.00 0.00 0.00 5.36
4358 9367 3.308323 GTGGAAGAAGATGAATCGTGCTC 59.692 47.826 0.00 0.00 0.00 4.26
4362 9371 0.181350 AAGATGAATCGTGCTCCCCC 59.819 55.000 0.00 0.00 0.00 5.40
4363 9372 0.692419 AGATGAATCGTGCTCCCCCT 60.692 55.000 0.00 0.00 0.00 4.79
4366 9375 0.032515 TGAATCGTGCTCCCCCTCTA 60.033 55.000 0.00 0.00 0.00 2.43
4383 9404 4.567747 CCCTCTAGCCTTGTTTGGTTACAT 60.568 45.833 0.00 0.00 0.00 2.29
4455 9486 1.939934 TCCTTGTCAACTGAACAAGCG 59.060 47.619 9.86 4.88 39.42 4.68
4516 9547 2.549754 CACCGATGCAACCTCCATAATC 59.450 50.000 0.00 0.00 0.00 1.75
4573 9604 6.183360 TGCAAAGGGTCATACAAACAGAAAAT 60.183 34.615 0.00 0.00 0.00 1.82
4613 9644 1.153958 GGTTGGCATCGAAGCTTGC 60.154 57.895 12.92 6.38 36.01 4.01
4660 9691 1.241315 ACCAAAACGGCCAGGAATCG 61.241 55.000 2.24 0.00 39.03 3.34
4662 9693 0.878416 CAAAACGGCCAGGAATCGAA 59.122 50.000 2.24 0.00 0.00 3.71
4692 10105 4.700365 GCCAAAGCGCCCGTGTTC 62.700 66.667 2.29 0.00 0.00 3.18
4743 10485 3.069289 GGGACGACGAACCAGTATTTTT 58.931 45.455 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.349022 GGGAAACATCATCCGGTAACAA 58.651 45.455 0.00 0.00 37.87 2.83
1 2 2.678479 CGGGAAACATCATCCGGTAACA 60.678 50.000 0.00 0.00 38.93 2.41
3 4 2.319136 CGGGAAACATCATCCGGTAA 57.681 50.000 0.00 0.00 38.93 2.85
5 6 4.954933 CGGGAAACATCATCCGGT 57.045 55.556 0.00 0.00 38.93 5.28
7 8 1.525995 CCCCGGGAAACATCATCCG 60.526 63.158 26.32 0.00 41.90 4.18
9 10 1.828224 GGCCCCGGGAAACATCATC 60.828 63.158 26.32 0.00 0.00 2.92
10 11 2.278738 GGCCCCGGGAAACATCAT 59.721 61.111 26.32 0.00 0.00 2.45
11 12 4.055227 GGGCCCCGGGAAACATCA 62.055 66.667 26.32 0.00 0.00 3.07
22 23 2.193087 TTTAGACAGCTTCGGGCCCC 62.193 60.000 18.66 0.78 43.05 5.80
23 24 1.025113 GTTTAGACAGCTTCGGGCCC 61.025 60.000 13.57 13.57 43.05 5.80
24 25 1.025113 GGTTTAGACAGCTTCGGGCC 61.025 60.000 0.00 0.00 43.05 5.80
25 26 1.025113 GGGTTTAGACAGCTTCGGGC 61.025 60.000 0.00 0.00 42.19 6.13
26 27 0.613777 AGGGTTTAGACAGCTTCGGG 59.386 55.000 0.00 0.00 0.00 5.14
27 28 2.076863 CAAGGGTTTAGACAGCTTCGG 58.923 52.381 0.00 0.00 0.00 4.30
28 29 2.737252 GACAAGGGTTTAGACAGCTTCG 59.263 50.000 0.00 0.00 0.00 3.79
29 30 4.009370 AGACAAGGGTTTAGACAGCTTC 57.991 45.455 0.00 0.00 0.00 3.86
30 31 4.137543 CAAGACAAGGGTTTAGACAGCTT 58.862 43.478 0.00 0.00 0.00 3.74
31 32 3.136626 ACAAGACAAGGGTTTAGACAGCT 59.863 43.478 0.00 0.00 0.00 4.24
32 33 3.251004 CACAAGACAAGGGTTTAGACAGC 59.749 47.826 0.00 0.00 0.00 4.40
33 34 3.251004 GCACAAGACAAGGGTTTAGACAG 59.749 47.826 0.00 0.00 0.00 3.51
34 35 3.211045 GCACAAGACAAGGGTTTAGACA 58.789 45.455 0.00 0.00 0.00 3.41
35 36 2.223377 CGCACAAGACAAGGGTTTAGAC 59.777 50.000 0.00 0.00 0.00 2.59
36 37 2.158871 ACGCACAAGACAAGGGTTTAGA 60.159 45.455 0.00 0.00 0.00 2.10
37 38 2.218603 ACGCACAAGACAAGGGTTTAG 58.781 47.619 0.00 0.00 0.00 1.85
38 39 2.335316 ACGCACAAGACAAGGGTTTA 57.665 45.000 0.00 0.00 0.00 2.01
39 40 1.134175 CAACGCACAAGACAAGGGTTT 59.866 47.619 0.00 0.00 36.46 3.27
40 41 0.738389 CAACGCACAAGACAAGGGTT 59.262 50.000 0.00 0.00 38.70 4.11
41 42 0.107410 TCAACGCACAAGACAAGGGT 60.107 50.000 0.00 0.00 0.00 4.34
42 43 1.197721 GATCAACGCACAAGACAAGGG 59.802 52.381 0.00 0.00 0.00 3.95
43 44 1.197721 GGATCAACGCACAAGACAAGG 59.802 52.381 0.00 0.00 0.00 3.61
44 45 1.136252 CGGATCAACGCACAAGACAAG 60.136 52.381 0.00 0.00 0.00 3.16
45 46 0.865111 CGGATCAACGCACAAGACAA 59.135 50.000 0.00 0.00 0.00 3.18
46 47 2.527671 CGGATCAACGCACAAGACA 58.472 52.632 0.00 0.00 0.00 3.41
64 65 2.107953 GGATGAGAGACGCAGGGC 59.892 66.667 0.00 0.00 0.00 5.19
65 66 2.025767 CTGGGATGAGAGACGCAGGG 62.026 65.000 0.00 0.00 41.27 4.45
66 67 1.326213 ACTGGGATGAGAGACGCAGG 61.326 60.000 0.00 0.00 46.38 4.85
68 69 0.611896 TGACTGGGATGAGAGACGCA 60.612 55.000 0.00 0.00 0.00 5.24
69 70 0.532573 TTGACTGGGATGAGAGACGC 59.467 55.000 0.00 0.00 0.00 5.19
70 71 1.134965 GGTTGACTGGGATGAGAGACG 60.135 57.143 0.00 0.00 0.00 4.18
71 72 1.208293 GGGTTGACTGGGATGAGAGAC 59.792 57.143 0.00 0.00 0.00 3.36
72 73 1.573108 GGGTTGACTGGGATGAGAGA 58.427 55.000 0.00 0.00 0.00 3.10
73 74 0.543749 GGGGTTGACTGGGATGAGAG 59.456 60.000 0.00 0.00 0.00 3.20
74 75 0.119155 AGGGGTTGACTGGGATGAGA 59.881 55.000 0.00 0.00 0.00 3.27
75 76 0.543749 GAGGGGTTGACTGGGATGAG 59.456 60.000 0.00 0.00 0.00 2.90
76 77 0.119155 AGAGGGGTTGACTGGGATGA 59.881 55.000 0.00 0.00 0.00 2.92
77 78 0.543749 GAGAGGGGTTGACTGGGATG 59.456 60.000 0.00 0.00 0.00 3.51
78 79 0.119155 TGAGAGGGGTTGACTGGGAT 59.881 55.000 0.00 0.00 0.00 3.85
79 80 0.104672 TTGAGAGGGGTTGACTGGGA 60.105 55.000 0.00 0.00 0.00 4.37
80 81 0.326264 CTTGAGAGGGGTTGACTGGG 59.674 60.000 0.00 0.00 0.00 4.45
81 82 0.322008 GCTTGAGAGGGGTTGACTGG 60.322 60.000 0.00 0.00 0.00 4.00
82 83 0.689623 AGCTTGAGAGGGGTTGACTG 59.310 55.000 0.00 0.00 0.00 3.51
83 84 1.903183 GTAGCTTGAGAGGGGTTGACT 59.097 52.381 0.00 0.00 0.00 3.41
84 85 1.903183 AGTAGCTTGAGAGGGGTTGAC 59.097 52.381 0.00 0.00 0.00 3.18
85 86 2.327325 AGTAGCTTGAGAGGGGTTGA 57.673 50.000 0.00 0.00 0.00 3.18
86 87 2.832129 TGTAGTAGCTTGAGAGGGGTTG 59.168 50.000 0.00 0.00 0.00 3.77
87 88 3.185880 TGTAGTAGCTTGAGAGGGGTT 57.814 47.619 0.00 0.00 0.00 4.11
88 89 2.921834 TGTAGTAGCTTGAGAGGGGT 57.078 50.000 0.00 0.00 0.00 4.95
89 90 4.730966 TCTATGTAGTAGCTTGAGAGGGG 58.269 47.826 0.00 0.00 0.00 4.79
90 91 5.336372 GCATCTATGTAGTAGCTTGAGAGGG 60.336 48.000 0.00 0.00 0.00 4.30
91 92 5.618863 CGCATCTATGTAGTAGCTTGAGAGG 60.619 48.000 0.00 0.00 0.00 3.69
92 93 5.389778 CGCATCTATGTAGTAGCTTGAGAG 58.610 45.833 0.00 0.00 0.00 3.20
93 94 4.320567 GCGCATCTATGTAGTAGCTTGAGA 60.321 45.833 0.30 0.00 0.00 3.27
94 95 3.917380 GCGCATCTATGTAGTAGCTTGAG 59.083 47.826 0.30 0.00 0.00 3.02
95 96 3.570125 AGCGCATCTATGTAGTAGCTTGA 59.430 43.478 11.47 0.00 0.00 3.02
96 97 3.672397 CAGCGCATCTATGTAGTAGCTTG 59.328 47.826 11.47 0.00 0.00 4.01
97 98 3.305676 CCAGCGCATCTATGTAGTAGCTT 60.306 47.826 11.47 0.00 0.00 3.74
98 99 2.230025 CCAGCGCATCTATGTAGTAGCT 59.770 50.000 11.47 0.00 0.00 3.32
99 100 2.600731 CCAGCGCATCTATGTAGTAGC 58.399 52.381 11.47 0.00 0.00 3.58
100 101 2.600731 GCCAGCGCATCTATGTAGTAG 58.399 52.381 11.47 0.00 34.03 2.57
101 102 1.272490 GGCCAGCGCATCTATGTAGTA 59.728 52.381 11.47 0.00 36.38 1.82
102 103 0.034059 GGCCAGCGCATCTATGTAGT 59.966 55.000 11.47 0.00 36.38 2.73
103 104 0.319728 AGGCCAGCGCATCTATGTAG 59.680 55.000 11.47 0.00 36.38 2.74
104 105 0.318441 GAGGCCAGCGCATCTATGTA 59.682 55.000 11.47 0.00 42.54 2.29
105 106 1.070445 GAGGCCAGCGCATCTATGT 59.930 57.895 11.47 0.00 42.54 2.29
106 107 1.070275 TGAGGCCAGCGCATCTATG 59.930 57.895 11.47 0.00 46.01 2.23
107 108 1.070445 GTGAGGCCAGCGCATCTAT 59.930 57.895 11.47 0.00 46.01 1.98
108 109 2.501128 GTGAGGCCAGCGCATCTA 59.499 61.111 11.47 0.00 46.01 1.98
109 110 4.827087 CGTGAGGCCAGCGCATCT 62.827 66.667 11.47 0.01 46.01 2.90
110 111 4.819761 TCGTGAGGCCAGCGCATC 62.820 66.667 11.47 0.00 46.03 3.91
113 114 3.642778 TTAGTCGTGAGGCCAGCGC 62.643 63.158 5.01 0.00 35.23 5.92
114 115 1.517257 CTTAGTCGTGAGGCCAGCG 60.517 63.158 5.01 6.38 35.23 5.18
115 116 0.458716 GACTTAGTCGTGAGGCCAGC 60.459 60.000 5.01 0.00 35.23 4.85
116 117 0.173708 GGACTTAGTCGTGAGGCCAG 59.826 60.000 5.01 0.00 40.98 4.85
117 118 0.251653 AGGACTTAGTCGTGAGGCCA 60.252 55.000 5.01 0.00 43.94 5.36
118 119 0.456628 GAGGACTTAGTCGTGAGGCC 59.543 60.000 12.50 0.00 41.68 5.19
119 120 1.174783 TGAGGACTTAGTCGTGAGGC 58.825 55.000 12.50 0.00 32.65 4.70
120 121 2.480416 GCATGAGGACTTAGTCGTGAGG 60.480 54.545 12.50 7.05 32.30 3.86
121 122 2.425312 AGCATGAGGACTTAGTCGTGAG 59.575 50.000 12.50 3.45 32.30 3.51
122 123 2.447443 AGCATGAGGACTTAGTCGTGA 58.553 47.619 12.50 4.38 32.30 4.35
123 124 2.949451 AGCATGAGGACTTAGTCGTG 57.051 50.000 12.50 6.78 32.65 4.35
124 125 3.381908 CCTTAGCATGAGGACTTAGTCGT 59.618 47.826 7.33 7.33 36.33 4.34
125 126 3.632604 TCCTTAGCATGAGGACTTAGTCG 59.367 47.826 6.27 0.00 38.37 4.18
133 134 2.103771 GCAGATGTCCTTAGCATGAGGA 59.896 50.000 0.00 0.00 40.93 3.71
134 135 2.492012 GCAGATGTCCTTAGCATGAGG 58.508 52.381 0.00 0.00 35.53 3.86
135 136 2.492012 GGCAGATGTCCTTAGCATGAG 58.508 52.381 0.00 0.00 0.00 2.90
136 137 1.202568 CGGCAGATGTCCTTAGCATGA 60.203 52.381 0.00 0.00 0.00 3.07
137 138 1.224075 CGGCAGATGTCCTTAGCATG 58.776 55.000 0.00 0.00 0.00 4.06
138 139 0.833287 ACGGCAGATGTCCTTAGCAT 59.167 50.000 0.00 0.00 0.00 3.79
139 140 0.108186 CACGGCAGATGTCCTTAGCA 60.108 55.000 0.00 0.00 0.00 3.49
140 141 0.175760 TCACGGCAGATGTCCTTAGC 59.824 55.000 0.00 0.00 0.00 3.09
141 142 1.204704 TGTCACGGCAGATGTCCTTAG 59.795 52.381 0.00 0.00 0.00 2.18
142 143 1.262417 TGTCACGGCAGATGTCCTTA 58.738 50.000 0.00 0.00 0.00 2.69
143 144 0.396435 TTGTCACGGCAGATGTCCTT 59.604 50.000 0.00 0.00 0.00 3.36
144 145 0.615331 ATTGTCACGGCAGATGTCCT 59.385 50.000 0.00 0.00 0.00 3.85
145 146 1.398390 GAATTGTCACGGCAGATGTCC 59.602 52.381 0.00 0.00 0.00 4.02
146 147 1.398390 GGAATTGTCACGGCAGATGTC 59.602 52.381 0.00 0.00 0.00 3.06
147 148 1.271325 TGGAATTGTCACGGCAGATGT 60.271 47.619 0.00 0.00 0.00 3.06
148 149 1.131126 GTGGAATTGTCACGGCAGATG 59.869 52.381 0.00 0.00 0.00 2.90
149 150 1.453155 GTGGAATTGTCACGGCAGAT 58.547 50.000 0.00 0.00 0.00 2.90
150 151 2.927004 GTGGAATTGTCACGGCAGA 58.073 52.632 0.00 0.00 0.00 4.26
156 157 2.294479 CGTTGTCGTGGAATTGTCAC 57.706 50.000 0.00 0.00 0.00 3.67
168 169 5.949787 CGTAGGATAATTTTTCACGTTGTCG 59.050 40.000 0.00 0.00 43.34 4.35
169 170 6.824557 ACGTAGGATAATTTTTCACGTTGTC 58.175 36.000 0.00 0.00 37.86 3.18
170 171 6.790285 ACGTAGGATAATTTTTCACGTTGT 57.210 33.333 0.00 0.00 37.86 3.32
171 172 7.956558 ACTACGTAGGATAATTTTTCACGTTG 58.043 34.615 25.63 9.84 41.01 4.10
172 173 9.294030 CTACTACGTAGGATAATTTTTCACGTT 57.706 33.333 25.63 1.94 41.01 3.99
192 193 7.914346 ACACACGTTAGCTTCATATTCTACTAC 59.086 37.037 0.00 0.00 0.00 2.73
200 201 7.843490 ACAAATACACACGTTAGCTTCATAT 57.157 32.000 0.00 0.00 0.00 1.78
208 209 5.446741 GGGCACATACAAATACACACGTTAG 60.447 44.000 0.00 0.00 0.00 2.34
210 211 3.189702 GGGCACATACAAATACACACGTT 59.810 43.478 0.00 0.00 0.00 3.99
211 212 2.745281 GGGCACATACAAATACACACGT 59.255 45.455 0.00 0.00 0.00 4.49
236 239 7.416731 ACTGAGACCTAACTACACCCTTATTA 58.583 38.462 0.00 0.00 0.00 0.98
243 246 3.126686 GTCGACTGAGACCTAACTACACC 59.873 52.174 8.70 0.00 35.22 4.16
244 247 4.002316 AGTCGACTGAGACCTAACTACAC 58.998 47.826 19.30 0.00 41.83 2.90
284 287 6.463360 TCTTGCATGTTATGTCACTTGACTA 58.537 36.000 10.63 0.00 44.99 2.59
286 289 5.409520 TCTCTTGCATGTTATGTCACTTGAC 59.590 40.000 2.19 2.19 44.97 3.18
330 333 7.384439 TCATACATTAAGATCCGTGCAAAAA 57.616 32.000 0.00 0.00 0.00 1.94
331 334 6.993786 TCATACATTAAGATCCGTGCAAAA 57.006 33.333 0.00 0.00 0.00 2.44
332 335 6.992123 AGATCATACATTAAGATCCGTGCAAA 59.008 34.615 0.00 0.00 39.10 3.68
335 338 6.090088 GTGAGATCATACATTAAGATCCGTGC 59.910 42.308 0.00 0.00 39.10 5.34
336 339 7.328005 CAGTGAGATCATACATTAAGATCCGTG 59.672 40.741 0.00 0.00 39.10 4.94
337 340 7.231519 TCAGTGAGATCATACATTAAGATCCGT 59.768 37.037 0.00 0.00 39.10 4.69
338 341 7.597386 TCAGTGAGATCATACATTAAGATCCG 58.403 38.462 0.00 0.00 39.10 4.18
348 351 9.231297 TCGATGTTATATCAGTGAGATCATACA 57.769 33.333 2.92 7.91 38.19 2.29
349 352 9.497030 GTCGATGTTATATCAGTGAGATCATAC 57.503 37.037 2.92 2.58 38.19 2.39
350 353 9.454859 AGTCGATGTTATATCAGTGAGATCATA 57.545 33.333 2.92 0.00 38.19 2.15
351 354 8.347004 AGTCGATGTTATATCAGTGAGATCAT 57.653 34.615 2.92 2.67 38.19 2.45
352 355 7.751768 AGTCGATGTTATATCAGTGAGATCA 57.248 36.000 2.92 0.00 38.19 2.92
353 356 9.767684 CTTAGTCGATGTTATATCAGTGAGATC 57.232 37.037 2.92 0.00 38.19 2.75
354 357 9.508642 TCTTAGTCGATGTTATATCAGTGAGAT 57.491 33.333 5.44 5.44 40.86 2.75
355 358 8.775527 GTCTTAGTCGATGTTATATCAGTGAGA 58.224 37.037 0.00 0.00 0.00 3.27
356 359 8.779303 AGTCTTAGTCGATGTTATATCAGTGAG 58.221 37.037 0.00 0.00 0.00 3.51
357 360 8.678593 AGTCTTAGTCGATGTTATATCAGTGA 57.321 34.615 0.00 0.00 0.00 3.41
367 370 9.877178 AGATTTCATTAAGTCTTAGTCGATGTT 57.123 29.630 0.00 0.00 27.87 2.71
368 371 9.522804 GAGATTTCATTAAGTCTTAGTCGATGT 57.477 33.333 0.00 0.00 32.29 3.06
369 372 9.521503 TGAGATTTCATTAAGTCTTAGTCGATG 57.478 33.333 0.00 0.00 32.29 3.84
370 373 9.743057 CTGAGATTTCATTAAGTCTTAGTCGAT 57.257 33.333 0.00 0.00 33.18 3.59
371 374 8.740906 ACTGAGATTTCATTAAGTCTTAGTCGA 58.259 33.333 4.39 0.00 41.47 4.20
372 375 8.918961 ACTGAGATTTCATTAAGTCTTAGTCG 57.081 34.615 4.39 0.00 41.47 4.18
377 380 8.997323 CAGTTGACTGAGATTTCATTAAGTCTT 58.003 33.333 5.19 0.00 46.59 3.01
378 381 8.545229 CAGTTGACTGAGATTTCATTAAGTCT 57.455 34.615 5.19 0.00 46.59 3.24
395 398 8.958119 TGTAACAGTCTTTTAATCAGTTGACT 57.042 30.769 0.00 0.00 35.48 3.41
396 399 9.651718 CTTGTAACAGTCTTTTAATCAGTTGAC 57.348 33.333 0.00 0.00 0.00 3.18
397 400 8.836413 CCTTGTAACAGTCTTTTAATCAGTTGA 58.164 33.333 0.00 0.00 0.00 3.18
398 401 8.076178 CCCTTGTAACAGTCTTTTAATCAGTTG 58.924 37.037 0.00 0.00 0.00 3.16
399 402 7.778382 ACCCTTGTAACAGTCTTTTAATCAGTT 59.222 33.333 0.00 0.00 0.00 3.16
400 403 7.228706 CACCCTTGTAACAGTCTTTTAATCAGT 59.771 37.037 0.00 0.00 0.00 3.41
401 404 7.228706 ACACCCTTGTAACAGTCTTTTAATCAG 59.771 37.037 0.00 0.00 32.60 2.90
402 405 7.057894 ACACCCTTGTAACAGTCTTTTAATCA 58.942 34.615 0.00 0.00 32.60 2.57
403 406 7.506328 ACACCCTTGTAACAGTCTTTTAATC 57.494 36.000 0.00 0.00 32.60 1.75
404 407 8.215736 ACTACACCCTTGTAACAGTCTTTTAAT 58.784 33.333 0.00 0.00 37.77 1.40
405 408 7.567458 ACTACACCCTTGTAACAGTCTTTTAA 58.433 34.615 0.00 0.00 37.77 1.52
406 409 7.128234 ACTACACCCTTGTAACAGTCTTTTA 57.872 36.000 0.00 0.00 37.77 1.52
407 410 5.997843 ACTACACCCTTGTAACAGTCTTTT 58.002 37.500 0.00 0.00 37.77 2.27
408 411 5.625568 ACTACACCCTTGTAACAGTCTTT 57.374 39.130 0.00 0.00 37.77 2.52
409 412 5.625568 AACTACACCCTTGTAACAGTCTT 57.374 39.130 0.00 0.00 37.77 3.01
410 413 5.245526 CCTAACTACACCCTTGTAACAGTCT 59.754 44.000 0.00 0.00 37.77 3.24
411 414 5.011431 ACCTAACTACACCCTTGTAACAGTC 59.989 44.000 0.00 0.00 37.77 3.51
412 415 4.903649 ACCTAACTACACCCTTGTAACAGT 59.096 41.667 0.00 0.00 37.77 3.55
413 416 5.245526 AGACCTAACTACACCCTTGTAACAG 59.754 44.000 0.00 0.00 37.77 3.16
414 417 5.149976 AGACCTAACTACACCCTTGTAACA 58.850 41.667 0.00 0.00 37.77 2.41
415 418 5.244626 TGAGACCTAACTACACCCTTGTAAC 59.755 44.000 0.00 0.00 37.77 2.50
416 419 5.396485 TGAGACCTAACTACACCCTTGTAA 58.604 41.667 0.00 0.00 37.77 2.41
417 420 5.001833 TGAGACCTAACTACACCCTTGTA 57.998 43.478 0.00 0.00 37.15 2.41
418 421 3.833070 CTGAGACCTAACTACACCCTTGT 59.167 47.826 0.00 0.00 40.02 3.16
419 422 3.833070 ACTGAGACCTAACTACACCCTTG 59.167 47.826 0.00 0.00 0.00 3.61
420 423 4.087907 GACTGAGACCTAACTACACCCTT 58.912 47.826 0.00 0.00 0.00 3.95
421 424 3.699413 GACTGAGACCTAACTACACCCT 58.301 50.000 0.00 0.00 0.00 4.34
422 425 2.422832 CGACTGAGACCTAACTACACCC 59.577 54.545 0.00 0.00 0.00 4.61
423 426 3.126686 GTCGACTGAGACCTAACTACACC 59.873 52.174 8.70 0.00 35.22 4.16
424 427 4.002316 AGTCGACTGAGACCTAACTACAC 58.998 47.826 19.30 0.00 41.83 2.90
425 428 4.001652 CAGTCGACTGAGACCTAACTACA 58.998 47.826 36.73 0.00 46.59 2.74
426 429 4.603231 CAGTCGACTGAGACCTAACTAC 57.397 50.000 36.73 0.00 46.59 2.73
449 452 8.017946 GTCACTTGACTGAGATTTGGTTAAATC 58.982 37.037 1.92 4.94 44.36 2.17
456 459 6.427853 TGTTATGTCACTTGACTGAGATTTGG 59.572 38.462 10.63 0.00 44.99 3.28
466 469 5.409520 TCTCTTGCATGTTATGTCACTTGAC 59.590 40.000 2.19 2.19 44.97 3.18
483 486 9.905171 AAAATCAGTTTATTTTCTCTCTCTTGC 57.095 29.630 0.00 0.00 34.71 4.01
518 524 7.683437 TCCGTGAGATCATACGTTAAGATAT 57.317 36.000 16.95 0.00 38.56 1.63
519 525 7.683437 ATCCGTGAGATCATACGTTAAGATA 57.317 36.000 16.95 0.00 38.56 1.98
527 533 6.629252 CGATGTTATATCCGTGAGATCATACG 59.371 42.308 12.99 12.99 39.83 3.06
534 540 3.187842 CGGTCGATGTTATATCCGTGAGA 59.812 47.826 0.00 0.00 34.38 3.27
547 553 2.079158 TCGTTAAGTCTCGGTCGATGT 58.921 47.619 0.00 0.00 0.00 3.06
574 580 6.879400 ACAGTCTTTTAAGTCTCAGTTCACT 58.121 36.000 0.00 0.00 0.00 3.41
575 581 7.541122 AACAGTCTTTTAAGTCTCAGTTCAC 57.459 36.000 0.00 0.00 0.00 3.18
576 582 8.255206 TGTAACAGTCTTTTAAGTCTCAGTTCA 58.745 33.333 0.00 0.00 0.00 3.18
577 583 8.644318 TGTAACAGTCTTTTAAGTCTCAGTTC 57.356 34.615 0.00 0.00 0.00 3.01
578 584 9.614792 ATTGTAACAGTCTTTTAAGTCTCAGTT 57.385 29.630 0.00 0.00 0.00 3.16
631 637 3.676873 GCCTTTTATGTCCAAGTGGCATG 60.677 47.826 13.99 0.00 38.99 4.06
632 638 2.497273 GCCTTTTATGTCCAAGTGGCAT 59.503 45.455 10.67 10.67 38.99 4.40
633 639 1.892474 GCCTTTTATGTCCAAGTGGCA 59.108 47.619 0.00 0.00 38.99 4.92
787 793 1.977009 GGACCAAAAGGCCGGGAAG 60.977 63.158 2.18 0.00 0.00 3.46
788 794 2.087857 ATGGACCAAAAGGCCGGGAA 62.088 55.000 2.18 0.00 0.00 3.97
799 805 4.349636 TCCTCAAAGTGTTAGATGGACCAA 59.650 41.667 0.00 0.00 0.00 3.67
829 835 2.356135 CACTTTACGTGGCCTGCTTAT 58.644 47.619 3.32 0.00 40.02 1.73
830 836 1.803334 CACTTTACGTGGCCTGCTTA 58.197 50.000 3.32 0.00 40.02 3.09
831 837 2.629002 CACTTTACGTGGCCTGCTT 58.371 52.632 3.32 0.00 40.02 3.91
832 838 4.379174 CACTTTACGTGGCCTGCT 57.621 55.556 3.32 0.00 40.02 4.24
840 846 3.992427 GCTTAGCACCTAACACTTTACGT 59.008 43.478 0.00 0.00 0.00 3.57
842 848 3.370061 CGGCTTAGCACCTAACACTTTAC 59.630 47.826 6.53 0.00 0.00 2.01
843 849 3.592059 CGGCTTAGCACCTAACACTTTA 58.408 45.455 6.53 0.00 0.00 1.85
844 850 2.423577 CGGCTTAGCACCTAACACTTT 58.576 47.619 6.53 0.00 0.00 2.66
845 851 1.338769 CCGGCTTAGCACCTAACACTT 60.339 52.381 6.53 0.00 0.00 3.16
846 852 0.249398 CCGGCTTAGCACCTAACACT 59.751 55.000 6.53 0.00 0.00 3.55
847 853 1.366854 GCCGGCTTAGCACCTAACAC 61.367 60.000 22.15 0.00 0.00 3.32
849 855 1.818363 GGCCGGCTTAGCACCTAAC 60.818 63.158 28.56 0.00 0.00 2.34
850 856 2.294839 TGGCCGGCTTAGCACCTAA 61.295 57.895 28.56 0.00 0.00 2.69
851 857 2.685743 TGGCCGGCTTAGCACCTA 60.686 61.111 28.56 0.00 0.00 3.08
923 934 3.933542 GAGAGGGGGAGTGGCCTGT 62.934 68.421 3.32 0.00 36.66 4.00
927 938 0.617820 TGTTAGAGAGGGGGAGTGGC 60.618 60.000 0.00 0.00 0.00 5.01
973 986 0.689412 CCCTCTCTCAACCCCTCTCC 60.689 65.000 0.00 0.00 0.00 3.71
979 992 0.689412 CCCTCTCCCTCTCTCAACCC 60.689 65.000 0.00 0.00 0.00 4.11
981 994 0.336737 TCCCCTCTCCCTCTCTCAAC 59.663 60.000 0.00 0.00 0.00 3.18
982 995 1.062581 CATCCCCTCTCCCTCTCTCAA 60.063 57.143 0.00 0.00 0.00 3.02
983 996 0.560193 CATCCCCTCTCCCTCTCTCA 59.440 60.000 0.00 0.00 0.00 3.27
1122 3012 0.248702 GAGTAGTACCAGCTCGCTGC 60.249 60.000 13.25 0.48 42.35 5.25
1137 3027 2.547211 GGTAGCTAACATCTCGCGAGTA 59.453 50.000 33.33 21.14 0.00 2.59
1138 3028 1.334243 GGTAGCTAACATCTCGCGAGT 59.666 52.381 33.33 19.17 0.00 4.18
1139 3029 1.660614 CGGTAGCTAACATCTCGCGAG 60.661 57.143 30.03 30.03 0.00 5.03
1140 3030 0.306840 CGGTAGCTAACATCTCGCGA 59.693 55.000 9.26 9.26 0.00 5.87
1143 3033 2.552743 TGGATCGGTAGCTAACATCTCG 59.447 50.000 9.96 1.15 0.00 4.04
1144 3034 4.673061 CGATGGATCGGTAGCTAACATCTC 60.673 50.000 9.96 1.78 45.93 2.75
1145 3035 3.191581 CGATGGATCGGTAGCTAACATCT 59.808 47.826 9.96 0.00 45.93 2.90
1174 3086 5.359194 TCTCCATTGGATAGAACCAGAAC 57.641 43.478 5.70 0.00 41.19 3.01
1187 3099 1.213678 TCCATTCCAGCTCTCCATTGG 59.786 52.381 0.00 0.00 0.00 3.16
1194 3106 1.066573 CGTCACTTCCATTCCAGCTCT 60.067 52.381 0.00 0.00 0.00 4.09
1221 3140 4.201980 TGCATGCAGATTCATTCAGTTAGC 60.202 41.667 18.46 0.00 0.00 3.09
1222 3141 5.494632 TGCATGCAGATTCATTCAGTTAG 57.505 39.130 18.46 0.00 0.00 2.34
1223 3142 4.337274 CCTGCATGCAGATTCATTCAGTTA 59.663 41.667 42.21 6.16 46.30 2.24
1255 3174 2.980233 AACAGCTCTTGCCGCACC 60.980 61.111 0.00 0.00 40.80 5.01
1256 3175 2.253452 CAACAGCTCTTGCCGCAC 59.747 61.111 0.00 0.00 40.80 5.34
1257 3176 2.956799 TTCCAACAGCTCTTGCCGCA 62.957 55.000 0.00 0.00 40.80 5.69
1258 3177 1.589716 ATTCCAACAGCTCTTGCCGC 61.590 55.000 0.00 0.00 40.80 6.53
1259 3178 1.737838 TATTCCAACAGCTCTTGCCG 58.262 50.000 0.00 0.00 40.80 5.69
1260 3179 2.159324 GCTTATTCCAACAGCTCTTGCC 60.159 50.000 0.00 0.00 40.80 4.52
1261 3180 2.159324 GGCTTATTCCAACAGCTCTTGC 60.159 50.000 0.00 0.00 40.05 4.01
1262 3181 3.084039 TGGCTTATTCCAACAGCTCTTG 58.916 45.455 0.00 0.00 33.76 3.02
1263 3182 3.084786 GTGGCTTATTCCAACAGCTCTT 58.915 45.455 0.00 0.00 37.96 2.85
1264 3183 2.716217 GTGGCTTATTCCAACAGCTCT 58.284 47.619 0.00 0.00 37.96 4.09
1265 3184 1.398390 CGTGGCTTATTCCAACAGCTC 59.602 52.381 0.00 0.00 37.96 4.09
3540 5479 4.371417 ACGGCAGGGACGGAGGTA 62.371 66.667 0.00 0.00 39.02 3.08
3696 5692 2.026905 GCGTCTCCCTCTTGATCTCCT 61.027 57.143 0.00 0.00 0.00 3.69
3701 5697 1.965754 GCAGGCGTCTCCCTCTTGAT 61.966 60.000 0.00 0.00 31.24 2.57
3702 5698 2.650116 GCAGGCGTCTCCCTCTTGA 61.650 63.158 0.00 0.00 31.24 3.02
3703 5699 2.125350 GCAGGCGTCTCCCTCTTG 60.125 66.667 0.00 0.00 31.24 3.02
3805 5804 2.125912 CTCCAGGAACGACGCCAG 60.126 66.667 0.00 0.00 0.00 4.85
3819 5818 1.437986 CCATTCCTCGTCGGACTCC 59.562 63.158 6.57 0.00 42.97 3.85
3889 5888 2.547007 CCACGTACATGTGACTGAACCA 60.547 50.000 9.11 0.00 42.55 3.67
3956 8919 0.095935 CGTATGCACACTGCTCAAGC 59.904 55.000 0.00 0.00 45.31 4.01
3962 8925 2.720590 CGTTTGTACGTATGCACACTGC 60.721 50.000 0.00 0.00 42.45 4.40
4006 8969 4.137872 TAGCCAGCCACGTACCGC 62.138 66.667 0.00 0.00 0.00 5.68
4060 9026 8.327941 ACAACTCAGTACAGTCGTAGTTTATA 57.672 34.615 0.00 0.00 0.00 0.98
4061 9027 7.211966 ACAACTCAGTACAGTCGTAGTTTAT 57.788 36.000 0.00 0.00 0.00 1.40
4135 9108 4.450122 CGCTGTCGTGCACATGCC 62.450 66.667 18.64 1.29 41.18 4.40
4193 9166 1.705256 TTACTGCAAAGTACGCTCCG 58.295 50.000 0.00 0.00 0.00 4.63
4290 9264 7.500992 CCCTAGCTTTCTAACAACTATGATCA 58.499 38.462 0.00 0.00 0.00 2.92
4358 9367 0.034089 CCAAACAAGGCTAGAGGGGG 60.034 60.000 0.00 0.00 0.00 5.40
4362 9371 4.636206 GGATGTAACCAAACAAGGCTAGAG 59.364 45.833 0.00 0.00 32.02 2.43
4363 9372 4.566907 GGGATGTAACCAAACAAGGCTAGA 60.567 45.833 0.00 0.00 32.02 2.43
4366 9375 2.110011 AGGGATGTAACCAAACAAGGCT 59.890 45.455 0.00 0.00 32.02 4.58
4455 9486 3.279875 CCGGGCGCCTATTTGAGC 61.280 66.667 28.56 5.59 0.00 4.26
4485 9516 0.817654 TGCATCGGTGTAGGAGTCTG 59.182 55.000 0.00 0.00 0.00 3.51
4487 9518 1.641577 GTTGCATCGGTGTAGGAGTC 58.358 55.000 0.00 0.00 0.00 3.36
4587 9618 2.877691 GATGCCAACCGAGTTGCC 59.122 61.111 10.25 1.97 41.62 4.52
4590 9621 1.298859 GCTTCGATGCCAACCGAGTT 61.299 55.000 12.05 0.00 36.11 3.01
4604 9635 1.305219 TGGGATTTCGGCAAGCTTCG 61.305 55.000 0.00 0.00 0.00 3.79
4613 9644 2.722094 TGTTTGATCCTGGGATTTCGG 58.278 47.619 3.45 0.00 34.60 4.30
4615 9646 6.475596 AATCATGTTTGATCCTGGGATTTC 57.524 37.500 3.45 0.00 41.83 2.17
4679 10092 0.460284 CATCTAGAACACGGGCGCTT 60.460 55.000 7.64 0.00 0.00 4.68
4743 10485 3.516615 CCGGTGAAAGCTTCAAACAAAA 58.483 40.909 0.00 0.00 42.15 2.44
4754 10496 3.623703 GACCCTCCCCGGTGAAAGC 62.624 68.421 0.00 0.00 35.79 3.51
4778 10520 7.955502 TGCTTGATCATTTGAAATGAAATTCG 58.044 30.769 22.72 12.15 33.67 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.