Multiple sequence alignment - TraesCS7D01G166400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G166400 chr7D 100.000 3187 0 0 1 3187 117131773 117134959 0.000000e+00 5886.0
1 TraesCS7D01G166400 chr7D 92.233 206 9 2 1 201 324662978 324662775 5.200000e-73 285.0
2 TraesCS7D01G166400 chr7D 89.954 219 14 4 1 214 399518341 399518556 3.130000e-70 276.0
3 TraesCS7D01G166400 chr7A 91.490 2550 74 43 530 2974 121055762 121058273 0.000000e+00 3374.0
4 TraesCS7D01G166400 chr7A 92.344 209 7 1 330 538 121045029 121045228 4.020000e-74 289.0
5 TraesCS7D01G166400 chr7B 91.546 2354 80 54 267 2561 76903204 76905497 0.000000e+00 3134.0
6 TraesCS7D01G166400 chr7B 94.203 483 15 4 2552 3030 76905520 76905993 0.000000e+00 725.0
7 TraesCS7D01G166400 chr7B 88.235 68 5 1 200 267 76903080 76903144 9.480000e-11 78.7
8 TraesCS7D01G166400 chr7B 91.837 49 2 2 199 247 528399228 528399182 2.050000e-07 67.6
9 TraesCS7D01G166400 chr7B 92.857 42 3 0 200 241 107765309 107765350 9.550000e-06 62.1
10 TraesCS7D01G166400 chr4D 93.137 204 9 1 2 200 191158357 191158154 8.650000e-76 294.0
11 TraesCS7D01G166400 chr4D 92.683 205 10 1 1 200 216443530 216443326 1.120000e-74 291.0
12 TraesCS7D01G166400 chr4D 92.271 207 9 2 1 200 192196112 192195906 1.450000e-73 287.0
13 TraesCS7D01G166400 chr4D 92.195 205 11 1 1 200 192164293 192164089 5.200000e-73 285.0
14 TraesCS7D01G166400 chr4D 92.195 205 9 2 1 200 367487433 367487635 1.870000e-72 283.0
15 TraesCS7D01G166400 chr1D 92.381 210 11 1 4 208 278408668 278408459 8.650000e-76 294.0
16 TraesCS7D01G166400 chr1D 93.182 44 2 1 200 243 469925028 469925070 2.650000e-06 63.9
17 TraesCS7D01G166400 chr2D 90.141 213 16 3 1 208 341816143 341815931 4.050000e-69 272.0
18 TraesCS7D01G166400 chr2D 88.722 133 15 0 1395 1527 546209815 546209947 2.540000e-36 163.0
19 TraesCS7D01G166400 chr6D 95.139 144 7 0 1384 1527 423816353 423816210 8.890000e-56 228.0
20 TraesCS7D01G166400 chr6D 93.182 44 2 1 200 243 394210041 394210083 2.650000e-06 63.9
21 TraesCS7D01G166400 chr6B 94.444 144 8 0 1384 1527 639534393 639534250 4.140000e-54 222.0
22 TraesCS7D01G166400 chr6B 81.250 176 24 7 1027 1199 639534725 639534556 1.990000e-27 134.0
23 TraesCS7D01G166400 chr6A 93.750 144 9 0 1384 1527 568517412 568517269 1.930000e-52 217.0
24 TraesCS7D01G166400 chr6A 81.421 183 23 9 1021 1199 568517748 568517573 4.290000e-29 139.0
25 TraesCS7D01G166400 chr2B 88.722 133 15 0 1395 1527 653017848 653017980 2.540000e-36 163.0
26 TraesCS7D01G166400 chr2A 88.722 133 15 0 1395 1527 687050274 687050406 2.540000e-36 163.0
27 TraesCS7D01G166400 chr2A 93.182 44 2 1 200 243 58910657 58910615 2.650000e-06 63.9
28 TraesCS7D01G166400 chr3A 93.182 44 1 2 200 243 31742368 31742327 2.650000e-06 63.9
29 TraesCS7D01G166400 chr5B 92.857 42 3 0 200 241 691938934 691938893 9.550000e-06 62.1
30 TraesCS7D01G166400 chr3B 92.857 42 3 0 200 241 11565341 11565300 9.550000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G166400 chr7D 117131773 117134959 3186 False 5886.000000 5886 100.000 1 3187 1 chr7D.!!$F1 3186
1 TraesCS7D01G166400 chr7A 121055762 121058273 2511 False 3374.000000 3374 91.490 530 2974 1 chr7A.!!$F2 2444
2 TraesCS7D01G166400 chr7B 76903080 76905993 2913 False 1312.566667 3134 91.328 200 3030 3 chr7B.!!$F2 2830

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
150 151 0.030101 GGGAGAGAGATCTTCGTGCG 59.97 60.0 0.00 0.00 0.0 5.34 F
152 153 0.099613 GAGAGAGATCTTCGTGCGCA 59.90 55.0 5.66 5.66 0.0 6.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2142 2269 0.872021 ATCGATCAGAAGAACGCGCC 60.872 55.0 5.73 0.0 39.56 6.53 R
2248 2378 0.032130 TTCATATCCTCTGACGGCGC 59.968 55.0 6.90 0.0 0.00 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.732289 ACAAGGCAATCCACCACAC 58.268 52.632 0.00 0.00 33.74 3.82
19 20 0.827507 ACAAGGCAATCCACCACACC 60.828 55.000 0.00 0.00 33.74 4.16
20 21 0.827089 CAAGGCAATCCACCACACCA 60.827 55.000 0.00 0.00 33.74 4.17
21 22 0.827507 AAGGCAATCCACCACACCAC 60.828 55.000 0.00 0.00 33.74 4.16
22 23 1.530419 GGCAATCCACCACACCACA 60.530 57.895 0.00 0.00 0.00 4.17
23 24 1.659794 GCAATCCACCACACCACAC 59.340 57.895 0.00 0.00 0.00 3.82
24 25 0.823356 GCAATCCACCACACCACACT 60.823 55.000 0.00 0.00 0.00 3.55
25 26 0.953727 CAATCCACCACACCACACTG 59.046 55.000 0.00 0.00 0.00 3.66
26 27 0.178992 AATCCACCACACCACACTGG 60.179 55.000 0.00 0.00 45.02 4.00
27 28 1.059584 ATCCACCACACCACACTGGA 61.060 55.000 0.00 0.00 40.96 3.86
28 29 1.227943 CCACCACACCACACTGGAG 60.228 63.158 0.00 0.00 40.96 3.86
29 30 1.526887 CACCACACCACACTGGAGT 59.473 57.895 0.00 0.00 42.11 3.85
30 31 0.756294 CACCACACCACACTGGAGTA 59.244 55.000 0.00 0.00 39.34 2.59
31 32 1.048601 ACCACACCACACTGGAGTAG 58.951 55.000 0.00 0.00 39.34 2.57
32 33 0.321671 CCACACCACACTGGAGTAGG 59.678 60.000 0.00 0.00 39.34 3.18
33 34 0.321671 CACACCACACTGGAGTAGGG 59.678 60.000 0.00 0.00 39.34 3.53
34 35 0.105142 ACACCACACTGGAGTAGGGT 60.105 55.000 0.00 0.00 46.36 4.34
35 36 1.148446 ACACCACACTGGAGTAGGGTA 59.852 52.381 0.00 0.00 42.52 3.69
36 37 2.225547 ACACCACACTGGAGTAGGGTAT 60.226 50.000 0.00 0.00 42.52 2.73
37 38 2.838202 CACCACACTGGAGTAGGGTATT 59.162 50.000 0.00 0.00 42.52 1.89
38 39 4.028131 CACCACACTGGAGTAGGGTATTA 58.972 47.826 0.00 0.00 42.52 0.98
39 40 4.028825 ACCACACTGGAGTAGGGTATTAC 58.971 47.826 0.00 0.00 42.52 1.89
40 41 4.028131 CCACACTGGAGTAGGGTATTACA 58.972 47.826 0.00 0.00 42.52 2.41
41 42 4.142004 CCACACTGGAGTAGGGTATTACAC 60.142 50.000 0.00 0.00 42.52 2.90
42 43 4.028825 ACACTGGAGTAGGGTATTACACC 58.971 47.826 0.00 0.00 42.62 4.16
65 66 2.995547 GGTGGCCCGAACCAGTAT 59.004 61.111 0.00 0.00 41.46 2.12
66 67 2.214235 GGTGGCCCGAACCAGTATA 58.786 57.895 0.00 0.00 41.46 1.47
67 68 0.106149 GGTGGCCCGAACCAGTATAG 59.894 60.000 0.00 0.00 41.46 1.31
68 69 0.532196 GTGGCCCGAACCAGTATAGC 60.532 60.000 0.00 0.00 41.46 2.97
69 70 1.300697 GGCCCGAACCAGTATAGCG 60.301 63.158 0.00 0.00 0.00 4.26
70 71 1.440476 GCCCGAACCAGTATAGCGT 59.560 57.895 0.00 0.00 0.00 5.07
71 72 0.874607 GCCCGAACCAGTATAGCGTG 60.875 60.000 0.00 0.00 0.00 5.34
72 73 0.458669 CCCGAACCAGTATAGCGTGT 59.541 55.000 0.00 0.00 0.00 4.49
73 74 1.535437 CCCGAACCAGTATAGCGTGTC 60.535 57.143 0.00 0.00 0.00 3.67
74 75 1.404391 CCGAACCAGTATAGCGTGTCT 59.596 52.381 0.00 0.00 0.00 3.41
75 76 2.541178 CCGAACCAGTATAGCGTGTCTC 60.541 54.545 0.00 0.00 0.00 3.36
76 77 2.355132 CGAACCAGTATAGCGTGTCTCT 59.645 50.000 0.00 0.00 0.00 3.10
77 78 3.181499 CGAACCAGTATAGCGTGTCTCTT 60.181 47.826 0.00 0.00 0.00 2.85
78 79 3.784701 ACCAGTATAGCGTGTCTCTTG 57.215 47.619 0.00 0.00 0.00 3.02
79 80 3.090037 ACCAGTATAGCGTGTCTCTTGT 58.910 45.455 0.00 0.00 0.00 3.16
80 81 3.510360 ACCAGTATAGCGTGTCTCTTGTT 59.490 43.478 0.00 0.00 0.00 2.83
81 82 4.106197 CCAGTATAGCGTGTCTCTTGTTC 58.894 47.826 0.00 0.00 0.00 3.18
82 83 4.142359 CCAGTATAGCGTGTCTCTTGTTCT 60.142 45.833 0.00 0.00 0.00 3.01
83 84 5.403246 CAGTATAGCGTGTCTCTTGTTCTT 58.597 41.667 0.00 0.00 0.00 2.52
84 85 5.864474 CAGTATAGCGTGTCTCTTGTTCTTT 59.136 40.000 0.00 0.00 0.00 2.52
85 86 5.864474 AGTATAGCGTGTCTCTTGTTCTTTG 59.136 40.000 0.00 0.00 0.00 2.77
86 87 2.213499 AGCGTGTCTCTTGTTCTTTGG 58.787 47.619 0.00 0.00 0.00 3.28
87 88 1.264288 GCGTGTCTCTTGTTCTTTGGG 59.736 52.381 0.00 0.00 0.00 4.12
88 89 2.561569 CGTGTCTCTTGTTCTTTGGGT 58.438 47.619 0.00 0.00 0.00 4.51
89 90 2.943033 CGTGTCTCTTGTTCTTTGGGTT 59.057 45.455 0.00 0.00 0.00 4.11
90 91 3.002348 CGTGTCTCTTGTTCTTTGGGTTC 59.998 47.826 0.00 0.00 0.00 3.62
91 92 3.945285 GTGTCTCTTGTTCTTTGGGTTCA 59.055 43.478 0.00 0.00 0.00 3.18
92 93 4.580580 GTGTCTCTTGTTCTTTGGGTTCAT 59.419 41.667 0.00 0.00 0.00 2.57
93 94 4.821805 TGTCTCTTGTTCTTTGGGTTCATC 59.178 41.667 0.00 0.00 0.00 2.92
94 95 4.065088 TCTCTTGTTCTTTGGGTTCATCG 58.935 43.478 0.00 0.00 0.00 3.84
95 96 4.065088 CTCTTGTTCTTTGGGTTCATCGA 58.935 43.478 0.00 0.00 0.00 3.59
96 97 4.065088 TCTTGTTCTTTGGGTTCATCGAG 58.935 43.478 0.00 0.00 0.00 4.04
97 98 3.762407 TGTTCTTTGGGTTCATCGAGA 57.238 42.857 0.00 0.00 0.00 4.04
98 99 4.286297 TGTTCTTTGGGTTCATCGAGAT 57.714 40.909 0.00 0.00 0.00 2.75
99 100 5.414789 TGTTCTTTGGGTTCATCGAGATA 57.585 39.130 0.00 0.00 0.00 1.98
100 101 5.419542 TGTTCTTTGGGTTCATCGAGATAG 58.580 41.667 0.00 0.00 0.00 2.08
101 102 4.672587 TCTTTGGGTTCATCGAGATAGG 57.327 45.455 0.00 0.00 0.00 2.57
102 103 2.910688 TTGGGTTCATCGAGATAGGC 57.089 50.000 0.00 0.00 0.00 3.93
103 104 1.048601 TGGGTTCATCGAGATAGGCC 58.951 55.000 0.00 0.00 0.00 5.19
104 105 1.343069 GGGTTCATCGAGATAGGCCT 58.657 55.000 11.78 11.78 0.00 5.19
105 106 1.694696 GGGTTCATCGAGATAGGCCTT 59.305 52.381 12.58 0.00 0.00 4.35
106 107 2.548920 GGGTTCATCGAGATAGGCCTTG 60.549 54.545 12.58 0.00 0.00 3.61
107 108 2.365617 GGTTCATCGAGATAGGCCTTGA 59.634 50.000 12.58 3.11 0.00 3.02
108 109 3.385577 GTTCATCGAGATAGGCCTTGAC 58.614 50.000 12.58 2.55 29.93 3.18
109 110 2.666317 TCATCGAGATAGGCCTTGACA 58.334 47.619 12.58 0.00 29.93 3.58
110 111 3.234353 TCATCGAGATAGGCCTTGACAT 58.766 45.455 12.58 0.00 29.93 3.06
111 112 3.256879 TCATCGAGATAGGCCTTGACATC 59.743 47.826 12.58 8.04 29.93 3.06
112 113 1.609072 TCGAGATAGGCCTTGACATCG 59.391 52.381 12.58 14.47 0.00 3.84
113 114 1.338337 CGAGATAGGCCTTGACATCGT 59.662 52.381 12.58 0.00 0.00 3.73
114 115 2.223829 CGAGATAGGCCTTGACATCGTT 60.224 50.000 12.58 0.00 0.00 3.85
115 116 3.126831 GAGATAGGCCTTGACATCGTTG 58.873 50.000 12.58 0.00 0.00 4.10
116 117 1.599542 GATAGGCCTTGACATCGTTGC 59.400 52.381 12.58 0.00 0.00 4.17
117 118 0.739462 TAGGCCTTGACATCGTTGCG 60.739 55.000 12.58 0.00 0.00 4.85
118 119 2.032634 GGCCTTGACATCGTTGCGA 61.033 57.895 0.00 0.00 41.13 5.10
119 120 1.421485 GCCTTGACATCGTTGCGAG 59.579 57.895 0.00 0.00 39.91 5.03
120 121 1.014044 GCCTTGACATCGTTGCGAGA 61.014 55.000 0.00 0.00 39.91 4.04
121 122 0.994995 CCTTGACATCGTTGCGAGAG 59.005 55.000 0.00 0.00 39.91 3.20
122 123 1.670087 CCTTGACATCGTTGCGAGAGT 60.670 52.381 0.00 0.00 39.91 3.24
123 124 1.388093 CTTGACATCGTTGCGAGAGTG 59.612 52.381 4.60 0.00 39.91 3.51
124 125 0.596082 TGACATCGTTGCGAGAGTGA 59.404 50.000 4.60 0.00 39.91 3.41
125 126 1.263776 GACATCGTTGCGAGAGTGAG 58.736 55.000 4.60 0.00 39.91 3.51
126 127 0.734253 ACATCGTTGCGAGAGTGAGC 60.734 55.000 0.00 0.00 39.91 4.26
127 128 0.457509 CATCGTTGCGAGAGTGAGCT 60.458 55.000 0.00 0.00 39.91 4.09
128 129 1.095600 ATCGTTGCGAGAGTGAGCTA 58.904 50.000 0.00 0.00 39.91 3.32
129 130 0.448197 TCGTTGCGAGAGTGAGCTAG 59.552 55.000 0.00 0.00 0.00 3.42
130 131 0.448197 CGTTGCGAGAGTGAGCTAGA 59.552 55.000 0.00 0.00 0.00 2.43
131 132 1.530852 CGTTGCGAGAGTGAGCTAGAG 60.531 57.143 0.00 0.00 0.00 2.43
132 133 1.098869 TTGCGAGAGTGAGCTAGAGG 58.901 55.000 0.00 0.00 0.00 3.69
133 134 0.749818 TGCGAGAGTGAGCTAGAGGG 60.750 60.000 0.00 0.00 0.00 4.30
134 135 0.464735 GCGAGAGTGAGCTAGAGGGA 60.465 60.000 0.00 0.00 0.00 4.20
135 136 1.593196 CGAGAGTGAGCTAGAGGGAG 58.407 60.000 0.00 0.00 0.00 4.30
136 137 1.140052 CGAGAGTGAGCTAGAGGGAGA 59.860 57.143 0.00 0.00 0.00 3.71
137 138 2.806745 CGAGAGTGAGCTAGAGGGAGAG 60.807 59.091 0.00 0.00 0.00 3.20
138 139 2.438021 GAGAGTGAGCTAGAGGGAGAGA 59.562 54.545 0.00 0.00 0.00 3.10
139 140 2.439507 AGAGTGAGCTAGAGGGAGAGAG 59.560 54.545 0.00 0.00 0.00 3.20
140 141 2.438021 GAGTGAGCTAGAGGGAGAGAGA 59.562 54.545 0.00 0.00 0.00 3.10
141 142 3.056080 AGTGAGCTAGAGGGAGAGAGAT 58.944 50.000 0.00 0.00 0.00 2.75
142 143 3.073062 AGTGAGCTAGAGGGAGAGAGATC 59.927 52.174 0.00 0.00 0.00 2.75
143 144 3.073062 GTGAGCTAGAGGGAGAGAGATCT 59.927 52.174 0.00 0.00 0.00 2.75
144 145 3.721575 TGAGCTAGAGGGAGAGAGATCTT 59.278 47.826 0.00 0.00 0.00 2.40
145 146 4.202461 TGAGCTAGAGGGAGAGAGATCTTC 60.202 50.000 0.00 0.00 0.00 2.87
146 147 3.074412 GCTAGAGGGAGAGAGATCTTCG 58.926 54.545 0.00 0.00 0.00 3.79
147 148 3.496160 GCTAGAGGGAGAGAGATCTTCGT 60.496 52.174 0.00 0.00 0.00 3.85
148 149 2.930950 AGAGGGAGAGAGATCTTCGTG 58.069 52.381 0.00 0.00 0.00 4.35
149 150 1.336755 GAGGGAGAGAGATCTTCGTGC 59.663 57.143 0.00 0.00 0.00 5.34
150 151 0.030101 GGGAGAGAGATCTTCGTGCG 59.970 60.000 0.00 0.00 0.00 5.34
151 152 0.593773 GGAGAGAGATCTTCGTGCGC 60.594 60.000 0.00 0.00 0.00 6.09
152 153 0.099613 GAGAGAGATCTTCGTGCGCA 59.900 55.000 5.66 5.66 0.00 6.09
153 154 0.179150 AGAGAGATCTTCGTGCGCAC 60.179 55.000 30.42 30.42 0.00 5.34
154 155 0.179150 GAGAGATCTTCGTGCGCACT 60.179 55.000 35.27 18.81 0.00 4.40
155 156 0.179150 AGAGATCTTCGTGCGCACTC 60.179 55.000 35.27 25.52 0.00 3.51
156 157 1.142778 GAGATCTTCGTGCGCACTCC 61.143 60.000 35.27 17.98 0.00 3.85
157 158 1.446099 GATCTTCGTGCGCACTCCA 60.446 57.895 35.27 18.17 0.00 3.86
158 159 1.416813 GATCTTCGTGCGCACTCCAG 61.417 60.000 35.27 26.34 0.00 3.86
159 160 2.159819 ATCTTCGTGCGCACTCCAGT 62.160 55.000 35.27 17.36 0.00 4.00
169 170 3.989104 CACTCCAGTGTTCGAACCT 57.011 52.632 24.78 17.73 40.96 3.50
170 171 1.784525 CACTCCAGTGTTCGAACCTC 58.215 55.000 24.78 17.20 40.96 3.85
171 172 1.068588 CACTCCAGTGTTCGAACCTCA 59.931 52.381 24.78 4.24 40.96 3.86
172 173 1.760613 ACTCCAGTGTTCGAACCTCAA 59.239 47.619 24.78 3.77 0.00 3.02
173 174 2.224066 ACTCCAGTGTTCGAACCTCAAG 60.224 50.000 24.78 19.00 0.00 3.02
174 175 1.070134 TCCAGTGTTCGAACCTCAAGG 59.930 52.381 24.78 20.15 42.17 3.61
175 176 1.512926 CAGTGTTCGAACCTCAAGGG 58.487 55.000 24.78 6.32 40.27 3.95
184 185 2.434331 CCTCAAGGGTTTGCCGGA 59.566 61.111 5.05 0.00 34.21 5.14
185 186 1.228429 CCTCAAGGGTTTGCCGGAA 60.228 57.895 5.05 0.00 34.21 4.30
186 187 1.524008 CCTCAAGGGTTTGCCGGAAC 61.524 60.000 5.05 0.29 34.21 3.62
187 188 1.524008 CTCAAGGGTTTGCCGGAACC 61.524 60.000 15.21 15.21 46.70 3.62
191 192 2.114411 GGTTTGCCGGAACCCAGA 59.886 61.111 5.05 0.00 42.63 3.86
192 193 1.529713 GGTTTGCCGGAACCCAGAA 60.530 57.895 5.05 0.00 42.63 3.02
193 194 0.898326 GGTTTGCCGGAACCCAGAAT 60.898 55.000 5.05 0.00 42.63 2.40
194 195 0.526211 GTTTGCCGGAACCCAGAATC 59.474 55.000 5.05 0.00 0.00 2.52
195 196 0.610785 TTTGCCGGAACCCAGAATCC 60.611 55.000 5.05 0.00 0.00 3.01
200 201 3.154589 GGAACCCAGAATCCGACAC 57.845 57.895 0.00 0.00 0.00 3.67
201 202 0.613777 GGAACCCAGAATCCGACACT 59.386 55.000 0.00 0.00 0.00 3.55
202 203 1.829222 GGAACCCAGAATCCGACACTA 59.171 52.381 0.00 0.00 0.00 2.74
203 204 2.159085 GGAACCCAGAATCCGACACTAG 60.159 54.545 0.00 0.00 0.00 2.57
204 205 0.824759 ACCCAGAATCCGACACTAGC 59.175 55.000 0.00 0.00 0.00 3.42
205 206 0.249073 CCCAGAATCCGACACTAGCG 60.249 60.000 0.00 0.00 0.00 4.26
206 207 0.738975 CCAGAATCCGACACTAGCGA 59.261 55.000 0.00 0.00 0.00 4.93
247 248 4.770362 TCCCCGCCATCCGAGTCA 62.770 66.667 0.00 0.00 40.02 3.41
249 250 3.770040 CCCGCCATCCGAGTCACA 61.770 66.667 0.00 0.00 40.02 3.58
250 251 2.501128 CCGCCATCCGAGTCACAT 59.499 61.111 0.00 0.00 40.02 3.21
251 252 1.739667 CCGCCATCCGAGTCACATA 59.260 57.895 0.00 0.00 40.02 2.29
285 346 6.598064 CCTTCTAATAATGAAAGGGTTCGTGT 59.402 38.462 0.00 0.00 36.46 4.49
309 374 2.360600 ATGGCTACCGCGGCAAAA 60.361 55.556 28.58 7.96 43.02 2.44
893 979 1.134670 AGCTTAAAGCCTAGCACGAGG 60.135 52.381 0.00 0.00 43.77 4.63
973 1059 2.113986 GTGCTCTGGTTGGTGGCT 59.886 61.111 0.00 0.00 0.00 4.75
992 1078 3.653078 TTGGGGTTGTAGGCCGGG 61.653 66.667 2.18 0.00 0.00 5.73
1244 1333 5.334646 CCCGTACGTATATATCCATCCGATG 60.335 48.000 15.21 0.93 31.92 3.84
1247 1336 7.359849 CCGTACGTATATATCCATCCGATGTAG 60.360 44.444 15.21 0.00 29.14 2.74
1248 1337 6.879276 ACGTATATATCCATCCGATGTAGG 57.121 41.667 7.60 1.26 29.14 3.18
1278 1373 0.857287 GTTCGTTTGACTGGTCGTCC 59.143 55.000 0.00 0.00 42.13 4.79
1326 1424 0.258194 TGATGCATGCATGGGTGGTA 59.742 50.000 36.73 11.38 36.70 3.25
1536 1650 1.983224 CCTGTGGAACCGATGTCCT 59.017 57.895 0.00 0.00 34.36 3.85
1774 1888 2.465010 TACGGGGGCTCCTTCTTCCA 62.465 60.000 0.52 0.00 0.00 3.53
1777 1891 1.208165 GGGGGCTCCTTCTTCCAGAA 61.208 60.000 0.52 0.00 32.50 3.02
1799 1913 2.268280 CAGCAGGTGCAGGAGGAG 59.732 66.667 4.48 0.00 45.16 3.69
1800 1914 3.007920 AGCAGGTGCAGGAGGAGG 61.008 66.667 4.48 0.00 45.16 4.30
1801 1915 4.792804 GCAGGTGCAGGAGGAGGC 62.793 72.222 0.00 0.00 41.59 4.70
1868 1991 2.045536 CTGAGCCTGGACAAGCCC 60.046 66.667 0.00 0.00 34.97 5.19
2099 2226 1.143969 CGTACGGGTGAAAGATCGGC 61.144 60.000 7.57 0.00 0.00 5.54
2111 2238 1.184322 AGATCGGCCGATGCATCTCT 61.184 55.000 43.46 30.25 40.13 3.10
2115 2242 0.529833 CGGCCGATGCATCTCTATCT 59.470 55.000 24.07 0.00 40.13 1.98
2121 2248 4.201970 GCCGATGCATCTCTATCTACCTAC 60.202 50.000 23.73 0.00 37.47 3.18
2122 2249 5.189928 CCGATGCATCTCTATCTACCTACT 58.810 45.833 23.73 0.00 0.00 2.57
2123 2250 5.065859 CCGATGCATCTCTATCTACCTACTG 59.934 48.000 23.73 2.95 0.00 2.74
2124 2251 5.448496 CGATGCATCTCTATCTACCTACTGC 60.448 48.000 23.73 0.00 0.00 4.40
2142 2269 3.679980 ACTGCTCACTTTTACTACATGCG 59.320 43.478 0.00 0.00 0.00 4.73
2147 2274 0.315059 CTTTTACTACATGCGGCGCG 60.315 55.000 28.09 16.51 0.00 6.86
2242 2372 0.178921 TGCTTCTCCAGTCCAGTCCT 60.179 55.000 0.00 0.00 0.00 3.85
2243 2373 0.980423 GCTTCTCCAGTCCAGTCCTT 59.020 55.000 0.00 0.00 0.00 3.36
2244 2374 1.066502 GCTTCTCCAGTCCAGTCCTTC 60.067 57.143 0.00 0.00 0.00 3.46
2245 2375 2.251818 CTTCTCCAGTCCAGTCCTTCA 58.748 52.381 0.00 0.00 0.00 3.02
2246 2376 1.930251 TCTCCAGTCCAGTCCTTCAG 58.070 55.000 0.00 0.00 0.00 3.02
2247 2377 0.248843 CTCCAGTCCAGTCCTTCAGC 59.751 60.000 0.00 0.00 0.00 4.26
2248 2378 1.079543 CCAGTCCAGTCCTTCAGCG 60.080 63.158 0.00 0.00 0.00 5.18
2250 2380 2.811317 GTCCAGTCCTTCAGCGCG 60.811 66.667 0.00 0.00 0.00 6.86
2315 2464 6.838382 AGTACCTGGTTTGATATTGTATCCC 58.162 40.000 3.84 0.00 0.00 3.85
2372 2533 2.949714 CGTTTGAACGTGAGCTCATT 57.050 45.000 21.47 11.32 46.63 2.57
2376 2537 4.318475 CGTTTGAACGTGAGCTCATTTGTA 60.318 41.667 21.47 4.25 46.63 2.41
2402 2581 1.273606 TGTGAGCTCAAGGTCTAGTGC 59.726 52.381 20.19 2.06 42.60 4.40
2430 2609 4.654389 AGTACTGGTACTCCACTACTGT 57.346 45.455 7.51 0.00 42.30 3.55
2431 2610 5.768980 AGTACTGGTACTCCACTACTGTA 57.231 43.478 7.51 0.00 42.30 2.74
2432 2611 5.743117 AGTACTGGTACTCCACTACTGTAG 58.257 45.833 13.13 13.13 42.30 2.74
2433 2612 4.654389 ACTGGTACTCCACTACTGTAGT 57.346 45.455 14.53 14.53 39.03 2.73
2434 2613 4.587891 ACTGGTACTCCACTACTGTAGTC 58.412 47.826 17.22 5.64 39.03 2.59
2598 2812 2.126850 CTCTCGTGCAAGCGACGA 60.127 61.111 15.15 15.15 43.32 4.20
2761 2977 4.807039 GGCTTGGCAATGGCGCAG 62.807 66.667 10.83 5.41 42.47 5.18
2937 3153 0.601558 TCGTGCCAACTGTAGAGGAC 59.398 55.000 0.00 0.00 0.00 3.85
2991 3210 0.686441 TACGAGGGAGGGGATGTGTG 60.686 60.000 0.00 0.00 0.00 3.82
2997 3216 3.976701 GAGGGGATGTGTGGCACGG 62.977 68.421 13.77 0.00 37.14 4.94
3030 3250 1.140161 CAGATTGTGGCCGCCAATG 59.860 57.895 21.38 9.05 34.18 2.82
3031 3251 1.304381 AGATTGTGGCCGCCAATGT 60.304 52.632 21.38 16.01 34.18 2.71
3032 3252 1.153784 GATTGTGGCCGCCAATGTG 60.154 57.895 21.38 0.00 34.18 3.21
3033 3253 3.299524 ATTGTGGCCGCCAATGTGC 62.300 57.895 15.39 1.27 34.18 4.57
3041 3261 4.847255 GCCAATGTGCGTCAAGAC 57.153 55.556 0.00 0.00 0.00 3.01
3042 3262 2.247790 GCCAATGTGCGTCAAGACT 58.752 52.632 0.00 0.00 0.00 3.24
3043 3263 0.166814 GCCAATGTGCGTCAAGACTC 59.833 55.000 0.00 0.00 0.00 3.36
3044 3264 1.511850 CCAATGTGCGTCAAGACTCA 58.488 50.000 0.00 0.00 0.00 3.41
3045 3265 1.462283 CCAATGTGCGTCAAGACTCAG 59.538 52.381 0.00 0.00 0.00 3.35
3046 3266 2.407090 CAATGTGCGTCAAGACTCAGA 58.593 47.619 0.00 0.00 0.00 3.27
3047 3267 2.802247 CAATGTGCGTCAAGACTCAGAA 59.198 45.455 0.00 0.00 0.00 3.02
3048 3268 2.595124 TGTGCGTCAAGACTCAGAAA 57.405 45.000 0.00 0.00 0.00 2.52
3049 3269 3.111853 TGTGCGTCAAGACTCAGAAAT 57.888 42.857 0.00 0.00 0.00 2.17
3050 3270 3.059884 TGTGCGTCAAGACTCAGAAATC 58.940 45.455 0.00 0.00 0.00 2.17
3051 3271 3.243873 TGTGCGTCAAGACTCAGAAATCT 60.244 43.478 0.00 0.00 0.00 2.40
3052 3272 3.122613 GTGCGTCAAGACTCAGAAATCTG 59.877 47.826 3.99 3.99 45.08 2.90
3053 3273 3.243873 TGCGTCAAGACTCAGAAATCTGT 60.244 43.478 10.06 0.00 44.12 3.41
3054 3274 3.743396 GCGTCAAGACTCAGAAATCTGTT 59.257 43.478 10.06 0.00 44.12 3.16
3055 3275 4.212214 GCGTCAAGACTCAGAAATCTGTTT 59.788 41.667 10.06 0.00 44.12 2.83
3056 3276 5.674008 CGTCAAGACTCAGAAATCTGTTTG 58.326 41.667 10.06 10.32 44.12 2.93
3057 3277 5.235186 CGTCAAGACTCAGAAATCTGTTTGT 59.765 40.000 10.06 7.90 44.12 2.83
3058 3278 6.425504 GTCAAGACTCAGAAATCTGTTTGTG 58.574 40.000 10.06 0.00 44.12 3.33
3059 3279 6.037610 GTCAAGACTCAGAAATCTGTTTGTGT 59.962 38.462 10.06 4.63 44.12 3.72
3060 3280 6.599244 TCAAGACTCAGAAATCTGTTTGTGTT 59.401 34.615 10.06 9.36 44.12 3.32
3061 3281 7.121168 TCAAGACTCAGAAATCTGTTTGTGTTT 59.879 33.333 10.06 3.73 44.12 2.83
3062 3282 8.397906 CAAGACTCAGAAATCTGTTTGTGTTTA 58.602 33.333 10.06 0.00 44.12 2.01
3063 3283 7.920738 AGACTCAGAAATCTGTTTGTGTTTAC 58.079 34.615 10.06 0.00 44.12 2.01
3064 3284 7.012421 AGACTCAGAAATCTGTTTGTGTTTACC 59.988 37.037 10.06 0.00 44.12 2.85
3065 3285 6.601613 ACTCAGAAATCTGTTTGTGTTTACCA 59.398 34.615 10.06 0.00 44.12 3.25
3066 3286 7.122055 ACTCAGAAATCTGTTTGTGTTTACCAA 59.878 33.333 10.06 0.00 44.12 3.67
3067 3287 7.831753 TCAGAAATCTGTTTGTGTTTACCAAA 58.168 30.769 10.06 0.00 44.12 3.28
3068 3288 7.973388 TCAGAAATCTGTTTGTGTTTACCAAAG 59.027 33.333 10.06 0.00 44.12 2.77
3069 3289 6.756542 AGAAATCTGTTTGTGTTTACCAAAGC 59.243 34.615 0.00 0.00 32.79 3.51
3070 3290 5.590530 ATCTGTTTGTGTTTACCAAAGCA 57.409 34.783 0.00 0.00 32.79 3.91
3071 3291 5.590530 TCTGTTTGTGTTTACCAAAGCAT 57.409 34.783 0.00 0.00 32.79 3.79
3072 3292 5.587289 TCTGTTTGTGTTTACCAAAGCATC 58.413 37.500 0.00 0.00 32.79 3.91
3073 3293 5.359576 TCTGTTTGTGTTTACCAAAGCATCT 59.640 36.000 0.00 0.00 32.79 2.90
3074 3294 5.587289 TGTTTGTGTTTACCAAAGCATCTC 58.413 37.500 0.00 0.00 32.79 2.75
3075 3295 5.359576 TGTTTGTGTTTACCAAAGCATCTCT 59.640 36.000 0.00 0.00 32.79 3.10
3076 3296 6.544197 TGTTTGTGTTTACCAAAGCATCTCTA 59.456 34.615 0.00 0.00 32.79 2.43
3077 3297 7.067615 TGTTTGTGTTTACCAAAGCATCTCTAA 59.932 33.333 0.00 0.00 32.79 2.10
3078 3298 6.554334 TGTGTTTACCAAAGCATCTCTAAC 57.446 37.500 0.00 0.00 0.00 2.34
3079 3299 5.178623 TGTGTTTACCAAAGCATCTCTAACG 59.821 40.000 0.00 0.00 0.00 3.18
3080 3300 4.693566 TGTTTACCAAAGCATCTCTAACGG 59.306 41.667 0.00 0.00 0.00 4.44
3081 3301 4.811969 TTACCAAAGCATCTCTAACGGA 57.188 40.909 0.00 0.00 0.00 4.69
3082 3302 2.973945 ACCAAAGCATCTCTAACGGAC 58.026 47.619 0.00 0.00 0.00 4.79
3083 3303 2.567615 ACCAAAGCATCTCTAACGGACT 59.432 45.455 0.00 0.00 0.00 3.85
3084 3304 3.190874 CCAAAGCATCTCTAACGGACTC 58.809 50.000 0.00 0.00 0.00 3.36
3085 3305 3.190874 CAAAGCATCTCTAACGGACTCC 58.809 50.000 0.00 0.00 0.00 3.85
3086 3306 2.445682 AGCATCTCTAACGGACTCCT 57.554 50.000 0.00 0.00 0.00 3.69
3087 3307 2.741145 AGCATCTCTAACGGACTCCTT 58.259 47.619 0.00 0.00 0.00 3.36
3088 3308 3.899726 AGCATCTCTAACGGACTCCTTA 58.100 45.455 0.00 0.00 0.00 2.69
3089 3309 4.279145 AGCATCTCTAACGGACTCCTTAA 58.721 43.478 0.00 0.00 0.00 1.85
3090 3310 4.710375 AGCATCTCTAACGGACTCCTTAAA 59.290 41.667 0.00 0.00 0.00 1.52
3091 3311 5.187186 AGCATCTCTAACGGACTCCTTAAAA 59.813 40.000 0.00 0.00 0.00 1.52
3092 3312 5.291371 GCATCTCTAACGGACTCCTTAAAAC 59.709 44.000 0.00 0.00 0.00 2.43
3093 3313 5.051891 TCTCTAACGGACTCCTTAAAACG 57.948 43.478 0.00 0.00 0.00 3.60
3094 3314 3.578688 TCTAACGGACTCCTTAAAACGC 58.421 45.455 0.00 0.00 0.00 4.84
3095 3315 1.142474 AACGGACTCCTTAAAACGCG 58.858 50.000 3.53 3.53 0.00 6.01
3096 3316 0.032540 ACGGACTCCTTAAAACGCGT 59.967 50.000 5.58 5.58 0.00 6.01
3097 3317 0.712222 CGGACTCCTTAAAACGCGTC 59.288 55.000 14.44 0.00 0.00 5.19
3098 3318 1.668047 CGGACTCCTTAAAACGCGTCT 60.668 52.381 14.44 5.48 0.00 4.18
3099 3319 2.414559 CGGACTCCTTAAAACGCGTCTA 60.415 50.000 14.44 4.28 0.00 2.59
3100 3320 2.919859 GGACTCCTTAAAACGCGTCTAC 59.080 50.000 14.44 0.00 0.00 2.59
3101 3321 3.366781 GGACTCCTTAAAACGCGTCTACT 60.367 47.826 14.44 0.00 0.00 2.57
3102 3322 4.233005 GACTCCTTAAAACGCGTCTACTT 58.767 43.478 14.44 6.64 0.00 2.24
3103 3323 3.985925 ACTCCTTAAAACGCGTCTACTTG 59.014 43.478 14.44 0.16 0.00 3.16
3104 3324 3.981211 TCCTTAAAACGCGTCTACTTGT 58.019 40.909 14.44 0.00 0.00 3.16
3105 3325 3.737266 TCCTTAAAACGCGTCTACTTGTG 59.263 43.478 14.44 0.00 0.00 3.33
3106 3326 3.737266 CCTTAAAACGCGTCTACTTGTGA 59.263 43.478 14.44 0.00 0.00 3.58
3107 3327 4.209703 CCTTAAAACGCGTCTACTTGTGAA 59.790 41.667 14.44 0.00 0.00 3.18
3108 3328 5.276963 CCTTAAAACGCGTCTACTTGTGAAA 60.277 40.000 14.44 0.00 0.00 2.69
3109 3329 4.806342 AAAACGCGTCTACTTGTGAAAT 57.194 36.364 14.44 0.00 0.00 2.17
3110 3330 3.788434 AACGCGTCTACTTGTGAAATG 57.212 42.857 14.44 0.00 0.00 2.32
3111 3331 3.021269 ACGCGTCTACTTGTGAAATGA 57.979 42.857 5.58 0.00 0.00 2.57
3112 3332 2.729882 ACGCGTCTACTTGTGAAATGAC 59.270 45.455 5.58 0.00 0.00 3.06
3113 3333 2.092211 CGCGTCTACTTGTGAAATGACC 59.908 50.000 0.00 0.00 0.00 4.02
3114 3334 2.415512 GCGTCTACTTGTGAAATGACCC 59.584 50.000 0.00 0.00 0.00 4.46
3115 3335 3.864921 GCGTCTACTTGTGAAATGACCCT 60.865 47.826 0.00 0.00 0.00 4.34
3116 3336 3.927142 CGTCTACTTGTGAAATGACCCTC 59.073 47.826 0.00 0.00 0.00 4.30
3117 3337 4.254492 GTCTACTTGTGAAATGACCCTCC 58.746 47.826 0.00 0.00 0.00 4.30
3118 3338 3.907474 TCTACTTGTGAAATGACCCTCCA 59.093 43.478 0.00 0.00 0.00 3.86
3119 3339 3.814504 ACTTGTGAAATGACCCTCCAT 57.185 42.857 0.00 0.00 0.00 3.41
3120 3340 4.118168 ACTTGTGAAATGACCCTCCATT 57.882 40.909 0.00 0.00 38.30 3.16
3121 3341 4.482990 ACTTGTGAAATGACCCTCCATTT 58.517 39.130 0.00 0.00 46.09 2.32
3122 3342 5.640147 ACTTGTGAAATGACCCTCCATTTA 58.360 37.500 0.00 0.00 44.19 1.40
3123 3343 5.476945 ACTTGTGAAATGACCCTCCATTTAC 59.523 40.000 0.00 0.00 44.19 2.01
3124 3344 4.006989 TGTGAAATGACCCTCCATTTACG 58.993 43.478 0.00 0.00 44.19 3.18
3125 3345 3.377172 GTGAAATGACCCTCCATTTACGG 59.623 47.826 0.00 0.00 44.19 4.02
3126 3346 2.052782 AATGACCCTCCATTTACGGC 57.947 50.000 0.00 0.00 33.29 5.68
3127 3347 1.213296 ATGACCCTCCATTTACGGCT 58.787 50.000 0.00 0.00 0.00 5.52
3128 3348 0.988832 TGACCCTCCATTTACGGCTT 59.011 50.000 0.00 0.00 0.00 4.35
3129 3349 1.065709 TGACCCTCCATTTACGGCTTC 60.066 52.381 0.00 0.00 0.00 3.86
3130 3350 0.107848 ACCCTCCATTTACGGCTTCG 60.108 55.000 0.00 0.00 40.22 3.79
3131 3351 0.814010 CCCTCCATTTACGGCTTCGG 60.814 60.000 0.00 0.00 38.38 4.30
3132 3352 0.177141 CCTCCATTTACGGCTTCGGA 59.823 55.000 0.00 0.00 38.38 4.55
3133 3353 1.287425 CTCCATTTACGGCTTCGGAC 58.713 55.000 0.00 0.00 38.38 4.79
3157 3377 3.926058 AAAACGCCCCTATCATACACT 57.074 42.857 0.00 0.00 0.00 3.55
3158 3378 2.910688 AACGCCCCTATCATACACTG 57.089 50.000 0.00 0.00 0.00 3.66
3159 3379 1.789523 ACGCCCCTATCATACACTGT 58.210 50.000 0.00 0.00 0.00 3.55
3160 3380 2.953453 ACGCCCCTATCATACACTGTA 58.047 47.619 0.00 0.00 0.00 2.74
3161 3381 3.507411 ACGCCCCTATCATACACTGTAT 58.493 45.455 0.00 0.00 0.00 2.29
3162 3382 3.510360 ACGCCCCTATCATACACTGTATC 59.490 47.826 0.00 0.00 0.00 2.24
3163 3383 3.509967 CGCCCCTATCATACACTGTATCA 59.490 47.826 0.00 0.00 0.00 2.15
3164 3384 4.380973 CGCCCCTATCATACACTGTATCAG 60.381 50.000 0.00 0.00 37.52 2.90
3165 3385 4.621747 GCCCCTATCATACACTGTATCAGC 60.622 50.000 0.00 0.00 34.37 4.26
3166 3386 4.081420 CCCCTATCATACACTGTATCAGCC 60.081 50.000 0.00 0.00 34.37 4.85
3167 3387 4.081420 CCCTATCATACACTGTATCAGCCC 60.081 50.000 0.00 0.00 34.37 5.19
3168 3388 3.667497 ATCATACACTGTATCAGCCCG 57.333 47.619 0.00 0.00 34.37 6.13
3169 3389 1.068588 TCATACACTGTATCAGCCCGC 59.931 52.381 0.00 0.00 34.37 6.13
3170 3390 0.032130 ATACACTGTATCAGCCCGCG 59.968 55.000 0.00 0.00 34.37 6.46
3171 3391 2.622903 TACACTGTATCAGCCCGCGC 62.623 60.000 0.00 0.00 34.37 6.86
3172 3392 4.530857 ACTGTATCAGCCCGCGCC 62.531 66.667 0.00 0.00 34.37 6.53
3180 3400 4.338710 AGCCCGCGCCCTGTAAAA 62.339 61.111 0.00 0.00 34.57 1.52
3181 3401 3.366915 GCCCGCGCCCTGTAAAAA 61.367 61.111 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.827507 GTGGTGTGGTGGATTGCCTT 60.828 55.000 0.00 0.00 34.31 4.35
5 6 0.823356 AGTGTGGTGTGGTGGATTGC 60.823 55.000 0.00 0.00 0.00 3.56
6 7 0.953727 CAGTGTGGTGTGGTGGATTG 59.046 55.000 0.00 0.00 0.00 2.67
7 8 0.178992 CCAGTGTGGTGTGGTGGATT 60.179 55.000 0.00 0.00 31.35 3.01
8 9 1.059584 TCCAGTGTGGTGTGGTGGAT 61.060 55.000 0.00 0.00 39.03 3.41
9 10 1.690985 TCCAGTGTGGTGTGGTGGA 60.691 57.895 0.00 0.00 39.03 4.02
10 11 1.227943 CTCCAGTGTGGTGTGGTGG 60.228 63.158 0.00 0.00 39.03 4.61
11 12 0.756294 TACTCCAGTGTGGTGTGGTG 59.244 55.000 10.27 0.00 43.35 4.17
12 13 1.048601 CTACTCCAGTGTGGTGTGGT 58.951 55.000 10.27 1.43 43.35 4.16
13 14 0.321671 CCTACTCCAGTGTGGTGTGG 59.678 60.000 10.27 7.54 43.35 4.17
14 15 0.321671 CCCTACTCCAGTGTGGTGTG 59.678 60.000 10.27 2.17 43.35 3.82
15 16 0.105142 ACCCTACTCCAGTGTGGTGT 60.105 55.000 5.99 5.99 45.22 4.16
16 17 1.933021 TACCCTACTCCAGTGTGGTG 58.067 55.000 10.66 0.00 39.03 4.17
17 18 2.942604 ATACCCTACTCCAGTGTGGT 57.057 50.000 7.06 7.06 39.03 4.16
18 19 4.028131 TGTAATACCCTACTCCAGTGTGG 58.972 47.826 0.00 0.00 39.43 4.17
19 20 4.142004 GGTGTAATACCCTACTCCAGTGTG 60.142 50.000 0.00 0.00 44.15 3.82
20 21 4.028825 GGTGTAATACCCTACTCCAGTGT 58.971 47.826 0.00 0.00 44.15 3.55
21 22 4.667519 GGTGTAATACCCTACTCCAGTG 57.332 50.000 0.00 0.00 44.15 3.66
48 49 0.106149 CTATACTGGTTCGGGCCACC 59.894 60.000 4.39 4.00 34.36 4.61
49 50 0.532196 GCTATACTGGTTCGGGCCAC 60.532 60.000 4.39 0.00 34.36 5.01
50 51 1.827394 GCTATACTGGTTCGGGCCA 59.173 57.895 4.39 0.00 36.97 5.36
51 52 1.300697 CGCTATACTGGTTCGGGCC 60.301 63.158 0.00 0.00 0.00 5.80
52 53 0.874607 CACGCTATACTGGTTCGGGC 60.875 60.000 0.00 0.00 0.00 6.13
53 54 0.458669 ACACGCTATACTGGTTCGGG 59.541 55.000 0.00 0.00 0.00 5.14
54 55 1.404391 AGACACGCTATACTGGTTCGG 59.596 52.381 0.00 0.00 0.00 4.30
55 56 2.355132 AGAGACACGCTATACTGGTTCG 59.645 50.000 0.00 0.00 0.00 3.95
56 57 4.106197 CAAGAGACACGCTATACTGGTTC 58.894 47.826 0.00 0.00 0.00 3.62
57 58 3.510360 ACAAGAGACACGCTATACTGGTT 59.490 43.478 0.00 0.00 0.00 3.67
58 59 3.090037 ACAAGAGACACGCTATACTGGT 58.910 45.455 0.00 0.00 0.00 4.00
59 60 3.784701 ACAAGAGACACGCTATACTGG 57.215 47.619 0.00 0.00 0.00 4.00
60 61 4.987832 AGAACAAGAGACACGCTATACTG 58.012 43.478 0.00 0.00 0.00 2.74
61 62 5.646577 AAGAACAAGAGACACGCTATACT 57.353 39.130 0.00 0.00 0.00 2.12
62 63 5.062308 CCAAAGAACAAGAGACACGCTATAC 59.938 44.000 0.00 0.00 0.00 1.47
63 64 5.168569 CCAAAGAACAAGAGACACGCTATA 58.831 41.667 0.00 0.00 0.00 1.31
64 65 3.997021 CCAAAGAACAAGAGACACGCTAT 59.003 43.478 0.00 0.00 0.00 2.97
65 66 3.390135 CCAAAGAACAAGAGACACGCTA 58.610 45.455 0.00 0.00 0.00 4.26
66 67 2.213499 CCAAAGAACAAGAGACACGCT 58.787 47.619 0.00 0.00 0.00 5.07
67 68 1.264288 CCCAAAGAACAAGAGACACGC 59.736 52.381 0.00 0.00 0.00 5.34
68 69 2.561569 ACCCAAAGAACAAGAGACACG 58.438 47.619 0.00 0.00 0.00 4.49
69 70 3.945285 TGAACCCAAAGAACAAGAGACAC 59.055 43.478 0.00 0.00 0.00 3.67
70 71 4.229304 TGAACCCAAAGAACAAGAGACA 57.771 40.909 0.00 0.00 0.00 3.41
71 72 4.083802 CGATGAACCCAAAGAACAAGAGAC 60.084 45.833 0.00 0.00 0.00 3.36
72 73 4.065088 CGATGAACCCAAAGAACAAGAGA 58.935 43.478 0.00 0.00 0.00 3.10
73 74 4.065088 TCGATGAACCCAAAGAACAAGAG 58.935 43.478 0.00 0.00 0.00 2.85
74 75 4.065088 CTCGATGAACCCAAAGAACAAGA 58.935 43.478 0.00 0.00 0.00 3.02
75 76 4.065088 TCTCGATGAACCCAAAGAACAAG 58.935 43.478 0.00 0.00 0.00 3.16
76 77 4.079980 TCTCGATGAACCCAAAGAACAA 57.920 40.909 0.00 0.00 0.00 2.83
77 78 3.762407 TCTCGATGAACCCAAAGAACA 57.238 42.857 0.00 0.00 0.00 3.18
78 79 4.811557 CCTATCTCGATGAACCCAAAGAAC 59.188 45.833 0.00 0.00 0.00 3.01
79 80 4.683400 GCCTATCTCGATGAACCCAAAGAA 60.683 45.833 0.00 0.00 0.00 2.52
80 81 3.181465 GCCTATCTCGATGAACCCAAAGA 60.181 47.826 0.00 0.00 0.00 2.52
81 82 3.134458 GCCTATCTCGATGAACCCAAAG 58.866 50.000 0.00 0.00 0.00 2.77
82 83 2.158813 GGCCTATCTCGATGAACCCAAA 60.159 50.000 0.00 0.00 0.00 3.28
83 84 1.416401 GGCCTATCTCGATGAACCCAA 59.584 52.381 0.00 0.00 0.00 4.12
84 85 1.048601 GGCCTATCTCGATGAACCCA 58.951 55.000 0.00 0.00 0.00 4.51
85 86 1.343069 AGGCCTATCTCGATGAACCC 58.657 55.000 1.29 0.00 0.00 4.11
86 87 2.365617 TCAAGGCCTATCTCGATGAACC 59.634 50.000 5.16 0.00 0.00 3.62
87 88 3.181475 TGTCAAGGCCTATCTCGATGAAC 60.181 47.826 5.16 0.10 0.00 3.18
88 89 3.031013 TGTCAAGGCCTATCTCGATGAA 58.969 45.455 5.16 0.00 0.00 2.57
89 90 2.666317 TGTCAAGGCCTATCTCGATGA 58.334 47.619 5.16 0.00 0.00 2.92
90 91 3.583806 GATGTCAAGGCCTATCTCGATG 58.416 50.000 5.16 0.00 0.00 3.84
91 92 2.230025 CGATGTCAAGGCCTATCTCGAT 59.770 50.000 5.16 0.00 0.00 3.59
92 93 1.609072 CGATGTCAAGGCCTATCTCGA 59.391 52.381 5.16 0.00 0.00 4.04
93 94 1.338337 ACGATGTCAAGGCCTATCTCG 59.662 52.381 5.16 13.26 0.00 4.04
94 95 3.126831 CAACGATGTCAAGGCCTATCTC 58.873 50.000 5.16 0.00 0.00 2.75
95 96 2.743183 GCAACGATGTCAAGGCCTATCT 60.743 50.000 5.16 0.00 0.00 1.98
96 97 1.599542 GCAACGATGTCAAGGCCTATC 59.400 52.381 5.16 4.09 0.00 2.08
97 98 1.668419 GCAACGATGTCAAGGCCTAT 58.332 50.000 5.16 0.00 0.00 2.57
98 99 0.739462 CGCAACGATGTCAAGGCCTA 60.739 55.000 5.16 0.00 0.00 3.93
99 100 2.034879 CGCAACGATGTCAAGGCCT 61.035 57.895 0.00 0.00 0.00 5.19
100 101 1.970917 CTCGCAACGATGTCAAGGCC 61.971 60.000 0.00 0.00 34.61 5.19
101 102 1.014044 TCTCGCAACGATGTCAAGGC 61.014 55.000 0.00 0.00 34.61 4.35
102 103 0.994995 CTCTCGCAACGATGTCAAGG 59.005 55.000 0.00 0.00 34.61 3.61
103 104 1.388093 CACTCTCGCAACGATGTCAAG 59.612 52.381 0.00 0.00 34.61 3.02
104 105 1.000717 TCACTCTCGCAACGATGTCAA 60.001 47.619 0.00 0.00 34.61 3.18
105 106 0.596082 TCACTCTCGCAACGATGTCA 59.404 50.000 0.00 0.00 34.61 3.58
106 107 1.263776 CTCACTCTCGCAACGATGTC 58.736 55.000 0.00 0.00 34.61 3.06
107 108 0.734253 GCTCACTCTCGCAACGATGT 60.734 55.000 0.00 0.00 34.61 3.06
108 109 0.457509 AGCTCACTCTCGCAACGATG 60.458 55.000 0.00 0.00 34.61 3.84
109 110 1.064803 CTAGCTCACTCTCGCAACGAT 59.935 52.381 0.00 0.00 34.61 3.73
110 111 0.448197 CTAGCTCACTCTCGCAACGA 59.552 55.000 0.00 0.00 0.00 3.85
111 112 0.448197 TCTAGCTCACTCTCGCAACG 59.552 55.000 0.00 0.00 0.00 4.10
112 113 1.202245 CCTCTAGCTCACTCTCGCAAC 60.202 57.143 0.00 0.00 0.00 4.17
113 114 1.098869 CCTCTAGCTCACTCTCGCAA 58.901 55.000 0.00 0.00 0.00 4.85
114 115 0.749818 CCCTCTAGCTCACTCTCGCA 60.750 60.000 0.00 0.00 0.00 5.10
115 116 0.464735 TCCCTCTAGCTCACTCTCGC 60.465 60.000 0.00 0.00 0.00 5.03
116 117 1.140052 TCTCCCTCTAGCTCACTCTCG 59.860 57.143 0.00 0.00 0.00 4.04
117 118 2.438021 TCTCTCCCTCTAGCTCACTCTC 59.562 54.545 0.00 0.00 0.00 3.20
118 119 2.439507 CTCTCTCCCTCTAGCTCACTCT 59.560 54.545 0.00 0.00 0.00 3.24
119 120 2.438021 TCTCTCTCCCTCTAGCTCACTC 59.562 54.545 0.00 0.00 0.00 3.51
120 121 2.487775 TCTCTCTCCCTCTAGCTCACT 58.512 52.381 0.00 0.00 0.00 3.41
121 122 3.073062 AGATCTCTCTCCCTCTAGCTCAC 59.927 52.174 0.00 0.00 0.00 3.51
122 123 3.326521 AGATCTCTCTCCCTCTAGCTCA 58.673 50.000 0.00 0.00 0.00 4.26
123 124 4.327680 GAAGATCTCTCTCCCTCTAGCTC 58.672 52.174 0.00 0.00 0.00 4.09
124 125 3.244561 CGAAGATCTCTCTCCCTCTAGCT 60.245 52.174 0.00 0.00 0.00 3.32
125 126 3.074412 CGAAGATCTCTCTCCCTCTAGC 58.926 54.545 0.00 0.00 0.00 3.42
126 127 4.065088 CACGAAGATCTCTCTCCCTCTAG 58.935 52.174 0.00 0.00 0.00 2.43
127 128 3.746114 GCACGAAGATCTCTCTCCCTCTA 60.746 52.174 0.00 0.00 0.00 2.43
128 129 2.930950 CACGAAGATCTCTCTCCCTCT 58.069 52.381 0.00 0.00 0.00 3.69
129 130 1.336755 GCACGAAGATCTCTCTCCCTC 59.663 57.143 0.00 0.00 0.00 4.30
130 131 1.398692 GCACGAAGATCTCTCTCCCT 58.601 55.000 0.00 0.00 0.00 4.20
131 132 0.030101 CGCACGAAGATCTCTCTCCC 59.970 60.000 0.00 0.00 0.00 4.30
132 133 0.593773 GCGCACGAAGATCTCTCTCC 60.594 60.000 0.30 0.00 0.00 3.71
133 134 0.099613 TGCGCACGAAGATCTCTCTC 59.900 55.000 5.66 0.00 0.00 3.20
134 135 0.179150 GTGCGCACGAAGATCTCTCT 60.179 55.000 26.77 0.00 0.00 3.10
135 136 0.179150 AGTGCGCACGAAGATCTCTC 60.179 55.000 32.94 6.50 36.20 3.20
136 137 0.179150 GAGTGCGCACGAAGATCTCT 60.179 55.000 32.94 13.91 36.20 3.10
137 138 1.142778 GGAGTGCGCACGAAGATCTC 61.143 60.000 32.94 22.55 36.20 2.75
138 139 1.153745 GGAGTGCGCACGAAGATCT 60.154 57.895 32.94 15.49 36.20 2.75
139 140 1.416813 CTGGAGTGCGCACGAAGATC 61.417 60.000 32.94 23.95 36.20 2.75
140 141 1.446792 CTGGAGTGCGCACGAAGAT 60.447 57.895 32.94 17.08 36.20 2.40
141 142 2.049156 CTGGAGTGCGCACGAAGA 60.049 61.111 32.94 17.85 36.20 2.87
142 143 2.356313 ACTGGAGTGCGCACGAAG 60.356 61.111 32.94 29.73 36.20 3.79
143 144 2.661537 CACTGGAGTGCGCACGAA 60.662 61.111 32.94 21.35 39.39 3.85
152 153 1.410004 TGAGGTTCGAACACTGGAGT 58.590 50.000 28.24 4.73 0.00 3.85
153 154 2.408050 CTTGAGGTTCGAACACTGGAG 58.592 52.381 28.24 16.79 0.00 3.86
154 155 1.070134 CCTTGAGGTTCGAACACTGGA 59.930 52.381 28.24 12.47 0.00 3.86
155 156 1.512926 CCTTGAGGTTCGAACACTGG 58.487 55.000 28.24 20.41 0.00 4.00
156 157 1.512926 CCCTTGAGGTTCGAACACTG 58.487 55.000 28.24 16.67 0.00 3.66
167 168 1.228429 TTCCGGCAAACCCTTGAGG 60.228 57.895 0.00 0.00 43.78 3.86
168 169 1.524008 GGTTCCGGCAAACCCTTGAG 61.524 60.000 13.01 0.00 42.46 3.02
169 170 1.529713 GGTTCCGGCAAACCCTTGA 60.530 57.895 13.01 0.00 42.46 3.02
170 171 3.047735 GGTTCCGGCAAACCCTTG 58.952 61.111 13.01 0.00 42.46 3.61
174 175 0.898326 ATTCTGGGTTCCGGCAAACC 60.898 55.000 15.21 15.21 46.66 3.27
175 176 0.526211 GATTCTGGGTTCCGGCAAAC 59.474 55.000 0.00 0.00 0.00 2.93
176 177 0.610785 GGATTCTGGGTTCCGGCAAA 60.611 55.000 0.00 0.00 0.00 3.68
177 178 1.001393 GGATTCTGGGTTCCGGCAA 60.001 57.895 0.00 0.00 0.00 4.52
178 179 2.674754 GGATTCTGGGTTCCGGCA 59.325 61.111 0.00 0.00 0.00 5.69
182 183 0.613777 AGTGTCGGATTCTGGGTTCC 59.386 55.000 0.00 0.00 0.00 3.62
183 184 2.738964 GCTAGTGTCGGATTCTGGGTTC 60.739 54.545 0.00 0.00 0.00 3.62
184 185 1.207329 GCTAGTGTCGGATTCTGGGTT 59.793 52.381 0.00 0.00 0.00 4.11
185 186 0.824759 GCTAGTGTCGGATTCTGGGT 59.175 55.000 0.00 0.00 0.00 4.51
186 187 0.249073 CGCTAGTGTCGGATTCTGGG 60.249 60.000 0.00 0.00 0.00 4.45
187 188 0.738975 TCGCTAGTGTCGGATTCTGG 59.261 55.000 2.66 0.00 0.00 3.86
188 189 1.671328 TCTCGCTAGTGTCGGATTCTG 59.329 52.381 2.66 0.00 0.00 3.02
189 190 1.944024 CTCTCGCTAGTGTCGGATTCT 59.056 52.381 2.66 0.00 0.00 2.40
190 191 1.598430 GCTCTCGCTAGTGTCGGATTC 60.598 57.143 2.66 0.00 0.00 2.52
191 192 0.382515 GCTCTCGCTAGTGTCGGATT 59.617 55.000 2.66 0.00 0.00 3.01
192 193 1.448922 GGCTCTCGCTAGTGTCGGAT 61.449 60.000 2.66 0.00 36.09 4.18
193 194 2.113433 GGCTCTCGCTAGTGTCGGA 61.113 63.158 2.66 0.42 36.09 4.55
194 195 2.409651 GGCTCTCGCTAGTGTCGG 59.590 66.667 2.66 0.00 36.09 4.79
195 196 2.023461 CGGCTCTCGCTAGTGTCG 59.977 66.667 2.66 0.00 37.90 4.35
196 197 1.090625 TCTCGGCTCTCGCTAGTGTC 61.091 60.000 2.66 0.00 39.05 3.67
197 198 1.078356 TCTCGGCTCTCGCTAGTGT 60.078 57.895 2.66 0.00 39.05 3.55
198 199 1.353804 GTCTCGGCTCTCGCTAGTG 59.646 63.158 0.00 0.00 39.05 2.74
199 200 1.078356 TGTCTCGGCTCTCGCTAGT 60.078 57.895 0.00 0.00 39.05 2.57
200 201 1.353804 GTGTCTCGGCTCTCGCTAG 59.646 63.158 0.00 0.00 39.05 3.42
201 202 2.113433 GGTGTCTCGGCTCTCGCTA 61.113 63.158 0.00 0.00 39.05 4.26
202 203 3.444805 GGTGTCTCGGCTCTCGCT 61.445 66.667 0.00 0.00 39.05 4.93
203 204 3.691744 CTGGTGTCTCGGCTCTCGC 62.692 68.421 0.00 0.00 39.05 5.03
204 205 2.487428 CTGGTGTCTCGGCTCTCG 59.513 66.667 0.00 0.00 40.90 4.04
205 206 1.040339 ATCCTGGTGTCTCGGCTCTC 61.040 60.000 0.00 0.00 0.00 3.20
206 207 0.616111 AATCCTGGTGTCTCGGCTCT 60.616 55.000 0.00 0.00 0.00 4.09
271 332 0.395312 GGAGGACACGAACCCTTTCA 59.605 55.000 0.00 0.00 31.84 2.69
275 336 1.229529 ATGGGAGGACACGAACCCT 60.230 57.895 0.00 0.00 42.49 4.34
285 346 3.161450 GCGGTAGCCATGGGAGGA 61.161 66.667 15.13 0.00 37.42 3.71
309 374 4.006319 GCTCTTTGCTCTTCCTGTTACAT 58.994 43.478 0.00 0.00 38.95 2.29
339 404 4.082523 CGGTCAGTCGGGTGGCAT 62.083 66.667 0.00 0.00 0.00 4.40
373 438 1.378514 CGGTGGGAAATGGGACTGG 60.379 63.158 0.00 0.00 0.00 4.00
409 474 2.959030 AGGTTTTCAACTTTGGAGGAGC 59.041 45.455 0.00 0.00 0.00 4.70
415 480 2.549926 GTGGCAGGTTTTCAACTTTGG 58.450 47.619 0.00 0.00 0.00 3.28
519 584 2.224209 GGTGAGGAAAGAAACCACTCGA 60.224 50.000 0.00 0.00 32.69 4.04
961 1047 2.202395 CCCAACAGCCACCAACCAG 61.202 63.158 0.00 0.00 0.00 4.00
973 1059 2.432563 CGGCCTACAACCCCAACA 59.567 61.111 0.00 0.00 0.00 3.33
992 1078 1.619827 CTCCCAGCATCATCTCTCTCC 59.380 57.143 0.00 0.00 0.00 3.71
1244 1333 6.020837 GTCAAACGAACGATACAAGATCCTAC 60.021 42.308 0.14 0.00 0.00 3.18
1247 1336 4.863131 AGTCAAACGAACGATACAAGATCC 59.137 41.667 0.14 0.00 0.00 3.36
1248 1337 5.220228 CCAGTCAAACGAACGATACAAGATC 60.220 44.000 0.14 0.00 0.00 2.75
1255 1350 2.030893 ACGACCAGTCAAACGAACGATA 60.031 45.455 0.14 0.00 0.00 2.92
1536 1650 2.691779 GGGAGGAGACGGAGGAGGA 61.692 68.421 0.00 0.00 0.00 3.71
1663 1777 4.429108 GTTTATCTGGCTCTGACTCTGAC 58.571 47.826 0.00 0.00 0.00 3.51
1664 1778 3.449018 GGTTTATCTGGCTCTGACTCTGA 59.551 47.826 0.00 0.00 0.00 3.27
1665 1779 3.431486 GGGTTTATCTGGCTCTGACTCTG 60.431 52.174 0.00 0.00 0.00 3.35
1666 1780 2.769095 GGGTTTATCTGGCTCTGACTCT 59.231 50.000 0.00 0.00 0.00 3.24
1667 1781 2.769095 AGGGTTTATCTGGCTCTGACTC 59.231 50.000 0.00 0.00 0.00 3.36
1668 1782 2.769095 GAGGGTTTATCTGGCTCTGACT 59.231 50.000 0.00 0.00 0.00 3.41
1774 1888 2.282040 GCACCTGCTGCCTGTTCT 60.282 61.111 0.00 0.00 40.42 3.01
1777 1891 4.655647 CCTGCACCTGCTGCCTGT 62.656 66.667 0.00 0.00 46.51 4.00
2086 2209 1.776034 GCATCGGCCGATCTTTCACC 61.776 60.000 37.10 15.18 31.62 4.02
2099 2226 5.065859 CAGTAGGTAGATAGAGATGCATCGG 59.934 48.000 20.67 0.00 0.00 4.18
2111 2238 9.118300 GTAGTAAAAGTGAGCAGTAGGTAGATA 57.882 37.037 0.00 0.00 0.00 1.98
2115 2242 7.544622 CATGTAGTAAAAGTGAGCAGTAGGTA 58.455 38.462 0.00 0.00 0.00 3.08
2121 2248 3.062639 CCGCATGTAGTAAAAGTGAGCAG 59.937 47.826 0.00 0.00 0.00 4.24
2122 2249 3.000041 CCGCATGTAGTAAAAGTGAGCA 59.000 45.455 0.00 0.00 0.00 4.26
2123 2250 2.223044 GCCGCATGTAGTAAAAGTGAGC 60.223 50.000 0.00 0.00 0.00 4.26
2124 2251 2.029244 CGCCGCATGTAGTAAAAGTGAG 59.971 50.000 0.00 0.00 0.00 3.51
2142 2269 0.872021 ATCGATCAGAAGAACGCGCC 60.872 55.000 5.73 0.00 39.56 6.53
2246 2376 3.559657 ATATCCTCTGACGGCGCGC 62.560 63.158 25.94 25.94 0.00 6.86
2247 2377 1.730902 CATATCCTCTGACGGCGCG 60.731 63.158 6.90 0.00 0.00 6.86
2248 2378 0.032130 TTCATATCCTCTGACGGCGC 59.968 55.000 6.90 0.00 0.00 6.53
2250 2380 2.362397 TCACTTCATATCCTCTGACGGC 59.638 50.000 0.00 0.00 0.00 5.68
2315 2464 0.738412 AAACGGCCCTAACATCGACG 60.738 55.000 0.00 0.00 0.00 5.12
2364 2513 4.507710 TCACATGGAGTACAAATGAGCTC 58.492 43.478 6.82 6.82 0.00 4.09
2365 2514 4.511527 CTCACATGGAGTACAAATGAGCT 58.488 43.478 6.34 0.00 37.92 4.09
2366 2515 4.871993 CTCACATGGAGTACAAATGAGC 57.128 45.455 6.34 0.00 37.92 4.26
2367 2516 4.511527 AGCTCACATGGAGTACAAATGAG 58.488 43.478 12.82 12.82 45.88 2.90
2372 2533 3.306989 CCTTGAGCTCACATGGAGTACAA 60.307 47.826 18.03 14.02 45.88 2.41
2376 2537 1.277557 GACCTTGAGCTCACATGGAGT 59.722 52.381 26.75 14.86 45.88 3.85
2421 2600 0.172803 GTGCCCGACTACAGTAGTGG 59.827 60.000 18.41 16.15 39.59 4.00
2423 2602 1.174783 CAGTGCCCGACTACAGTAGT 58.825 55.000 13.41 13.41 42.86 2.73
2424 2603 0.456221 CCAGTGCCCGACTACAGTAG 59.544 60.000 6.00 6.00 31.73 2.57
2427 2606 1.079819 CACCAGTGCCCGACTACAG 60.080 63.158 0.00 0.00 31.73 2.74
2760 2976 2.685380 CGGGCCTCTTGACCCTCT 60.685 66.667 0.84 0.00 44.63 3.69
2761 2977 4.475135 GCGGGCCTCTTGACCCTC 62.475 72.222 0.84 0.00 44.63 4.30
2937 3153 6.017400 AGAAATATCAAACTGCCTTGTGTG 57.983 37.500 0.00 0.00 0.00 3.82
3030 3250 3.122613 CAGATTTCTGAGTCTTGACGCAC 59.877 47.826 1.15 0.00 46.59 5.34
3031 3251 3.243873 ACAGATTTCTGAGTCTTGACGCA 60.244 43.478 14.29 6.97 46.59 5.24
3032 3252 3.321497 ACAGATTTCTGAGTCTTGACGC 58.679 45.455 14.29 0.00 46.59 5.19
3033 3253 5.235186 ACAAACAGATTTCTGAGTCTTGACG 59.765 40.000 14.29 0.00 46.59 4.35
3034 3254 6.037610 ACACAAACAGATTTCTGAGTCTTGAC 59.962 38.462 14.29 0.00 46.59 3.18
3035 3255 6.115446 ACACAAACAGATTTCTGAGTCTTGA 58.885 36.000 14.29 0.00 46.59 3.02
3036 3256 6.369059 ACACAAACAGATTTCTGAGTCTTG 57.631 37.500 14.29 12.43 46.59 3.02
3037 3257 7.396540 AAACACAAACAGATTTCTGAGTCTT 57.603 32.000 14.29 2.12 46.59 3.01
3038 3258 7.012421 GGTAAACACAAACAGATTTCTGAGTCT 59.988 37.037 14.29 0.00 46.59 3.24
3039 3259 7.132863 GGTAAACACAAACAGATTTCTGAGTC 58.867 38.462 14.29 0.00 46.59 3.36
3040 3260 6.601613 TGGTAAACACAAACAGATTTCTGAGT 59.398 34.615 14.29 6.86 46.59 3.41
3041 3261 7.026631 TGGTAAACACAAACAGATTTCTGAG 57.973 36.000 14.29 6.30 46.59 3.35
3042 3262 7.397892 TTGGTAAACACAAACAGATTTCTGA 57.602 32.000 14.29 0.00 46.59 3.27
3044 3264 6.756542 GCTTTGGTAAACACAAACAGATTTCT 59.243 34.615 0.00 0.00 34.43 2.52
3045 3265 6.533367 TGCTTTGGTAAACACAAACAGATTTC 59.467 34.615 0.00 0.00 34.43 2.17
3046 3266 6.402222 TGCTTTGGTAAACACAAACAGATTT 58.598 32.000 0.00 0.00 34.43 2.17
3047 3267 5.971763 TGCTTTGGTAAACACAAACAGATT 58.028 33.333 0.00 0.00 34.43 2.40
3048 3268 5.590530 TGCTTTGGTAAACACAAACAGAT 57.409 34.783 0.00 0.00 34.43 2.90
3049 3269 5.359576 AGATGCTTTGGTAAACACAAACAGA 59.640 36.000 0.00 0.00 34.43 3.41
3050 3270 5.591099 AGATGCTTTGGTAAACACAAACAG 58.409 37.500 0.00 0.00 34.43 3.16
3051 3271 5.359576 AGAGATGCTTTGGTAAACACAAACA 59.640 36.000 0.00 0.00 34.43 2.83
3052 3272 5.831997 AGAGATGCTTTGGTAAACACAAAC 58.168 37.500 0.00 0.00 34.43 2.93
3053 3273 7.422399 GTTAGAGATGCTTTGGTAAACACAAA 58.578 34.615 0.00 0.00 36.49 2.83
3054 3274 6.293190 CGTTAGAGATGCTTTGGTAAACACAA 60.293 38.462 0.00 0.00 0.00 3.33
3055 3275 5.178623 CGTTAGAGATGCTTTGGTAAACACA 59.821 40.000 0.00 0.00 0.00 3.72
3056 3276 5.390567 CCGTTAGAGATGCTTTGGTAAACAC 60.391 44.000 0.00 0.00 0.00 3.32
3057 3277 4.693566 CCGTTAGAGATGCTTTGGTAAACA 59.306 41.667 0.00 0.00 0.00 2.83
3058 3278 4.933400 TCCGTTAGAGATGCTTTGGTAAAC 59.067 41.667 0.00 0.00 0.00 2.01
3059 3279 4.933400 GTCCGTTAGAGATGCTTTGGTAAA 59.067 41.667 0.00 0.00 0.00 2.01
3060 3280 4.222145 AGTCCGTTAGAGATGCTTTGGTAA 59.778 41.667 0.00 0.00 0.00 2.85
3061 3281 3.767673 AGTCCGTTAGAGATGCTTTGGTA 59.232 43.478 0.00 0.00 0.00 3.25
3062 3282 2.567615 AGTCCGTTAGAGATGCTTTGGT 59.432 45.455 0.00 0.00 0.00 3.67
3063 3283 3.190874 GAGTCCGTTAGAGATGCTTTGG 58.809 50.000 0.00 0.00 0.00 3.28
3064 3284 3.118956 AGGAGTCCGTTAGAGATGCTTTG 60.119 47.826 2.76 0.00 0.00 2.77
3065 3285 3.100671 AGGAGTCCGTTAGAGATGCTTT 58.899 45.455 2.76 0.00 0.00 3.51
3066 3286 2.741145 AGGAGTCCGTTAGAGATGCTT 58.259 47.619 2.76 0.00 0.00 3.91
3067 3287 2.445682 AGGAGTCCGTTAGAGATGCT 57.554 50.000 2.76 0.00 0.00 3.79
3068 3288 4.650754 TTAAGGAGTCCGTTAGAGATGC 57.349 45.455 1.94 0.00 0.00 3.91
3069 3289 5.515626 CGTTTTAAGGAGTCCGTTAGAGATG 59.484 44.000 1.94 0.00 0.00 2.90
3070 3290 5.648572 CGTTTTAAGGAGTCCGTTAGAGAT 58.351 41.667 1.94 0.00 0.00 2.75
3071 3291 4.616835 GCGTTTTAAGGAGTCCGTTAGAGA 60.617 45.833 1.94 0.00 0.00 3.10
3072 3292 3.611549 GCGTTTTAAGGAGTCCGTTAGAG 59.388 47.826 1.94 0.00 0.00 2.43
3073 3293 3.578688 GCGTTTTAAGGAGTCCGTTAGA 58.421 45.455 1.94 0.00 0.00 2.10
3074 3294 2.343544 CGCGTTTTAAGGAGTCCGTTAG 59.656 50.000 1.94 0.00 0.00 2.34
3075 3295 2.288152 ACGCGTTTTAAGGAGTCCGTTA 60.288 45.455 5.58 0.06 0.00 3.18
3076 3296 1.142474 CGCGTTTTAAGGAGTCCGTT 58.858 50.000 1.94 1.06 0.00 4.44
3077 3297 0.032540 ACGCGTTTTAAGGAGTCCGT 59.967 50.000 5.58 2.53 0.00 4.69
3078 3298 0.712222 GACGCGTTTTAAGGAGTCCG 59.288 55.000 15.53 0.00 37.55 4.79
3079 3299 2.075979 AGACGCGTTTTAAGGAGTCC 57.924 50.000 15.53 0.00 42.12 3.85
3080 3300 3.831112 AGTAGACGCGTTTTAAGGAGTC 58.169 45.455 15.53 9.91 41.69 3.36
3081 3301 3.930634 AGTAGACGCGTTTTAAGGAGT 57.069 42.857 15.53 0.00 0.00 3.85
3082 3302 3.985925 ACAAGTAGACGCGTTTTAAGGAG 59.014 43.478 15.53 2.47 0.00 3.69
3083 3303 3.737266 CACAAGTAGACGCGTTTTAAGGA 59.263 43.478 15.53 0.00 0.00 3.36
3084 3304 3.737266 TCACAAGTAGACGCGTTTTAAGG 59.263 43.478 15.53 5.20 0.00 2.69
3085 3305 4.959631 TCACAAGTAGACGCGTTTTAAG 57.040 40.909 15.53 5.04 0.00 1.85
3086 3306 5.715429 TTTCACAAGTAGACGCGTTTTAA 57.285 34.783 15.53 0.00 0.00 1.52
3087 3307 5.462729 TCATTTCACAAGTAGACGCGTTTTA 59.537 36.000 15.53 6.78 0.00 1.52
3088 3308 4.271533 TCATTTCACAAGTAGACGCGTTTT 59.728 37.500 15.53 7.94 0.00 2.43
3089 3309 3.805422 TCATTTCACAAGTAGACGCGTTT 59.195 39.130 15.53 11.28 0.00 3.60
3090 3310 3.183775 GTCATTTCACAAGTAGACGCGTT 59.816 43.478 15.53 6.16 0.00 4.84
3091 3311 2.729882 GTCATTTCACAAGTAGACGCGT 59.270 45.455 13.85 13.85 0.00 6.01
3092 3312 2.092211 GGTCATTTCACAAGTAGACGCG 59.908 50.000 3.53 3.53 0.00 6.01
3093 3313 2.415512 GGGTCATTTCACAAGTAGACGC 59.584 50.000 0.00 0.00 33.06 5.19
3094 3314 3.926616 AGGGTCATTTCACAAGTAGACG 58.073 45.455 0.00 0.00 0.00 4.18
3095 3315 4.254492 GGAGGGTCATTTCACAAGTAGAC 58.746 47.826 0.00 0.00 0.00 2.59
3096 3316 3.907474 TGGAGGGTCATTTCACAAGTAGA 59.093 43.478 0.00 0.00 0.00 2.59
3097 3317 4.286297 TGGAGGGTCATTTCACAAGTAG 57.714 45.455 0.00 0.00 0.00 2.57
3098 3318 4.927267 ATGGAGGGTCATTTCACAAGTA 57.073 40.909 0.00 0.00 0.00 2.24
3099 3319 3.814504 ATGGAGGGTCATTTCACAAGT 57.185 42.857 0.00 0.00 0.00 3.16
3100 3320 5.391950 CGTAAATGGAGGGTCATTTCACAAG 60.392 44.000 6.15 0.00 43.70 3.16
3101 3321 4.457603 CGTAAATGGAGGGTCATTTCACAA 59.542 41.667 6.15 0.00 43.70 3.33
3102 3322 4.006989 CGTAAATGGAGGGTCATTTCACA 58.993 43.478 6.15 0.00 43.70 3.58
3103 3323 3.377172 CCGTAAATGGAGGGTCATTTCAC 59.623 47.826 6.15 4.08 43.70 3.18
3104 3324 3.616219 CCGTAAATGGAGGGTCATTTCA 58.384 45.455 6.15 0.00 43.70 2.69
3105 3325 2.357952 GCCGTAAATGGAGGGTCATTTC 59.642 50.000 6.15 0.12 43.70 2.17
3106 3326 2.025321 AGCCGTAAATGGAGGGTCATTT 60.025 45.455 7.75 7.75 45.76 2.32
3107 3327 1.564348 AGCCGTAAATGGAGGGTCATT 59.436 47.619 0.00 0.00 38.84 2.57
3108 3328 1.213296 AGCCGTAAATGGAGGGTCAT 58.787 50.000 0.00 0.00 0.00 3.06
3109 3329 0.988832 AAGCCGTAAATGGAGGGTCA 59.011 50.000 0.00 0.00 34.28 4.02
3110 3330 1.664873 GAAGCCGTAAATGGAGGGTC 58.335 55.000 0.00 0.00 34.28 4.46
3111 3331 0.107848 CGAAGCCGTAAATGGAGGGT 60.108 55.000 0.00 0.00 37.35 4.34
3112 3332 0.814010 CCGAAGCCGTAAATGGAGGG 60.814 60.000 0.00 0.00 0.00 4.30
3113 3333 0.177141 TCCGAAGCCGTAAATGGAGG 59.823 55.000 0.00 0.00 0.00 4.30
3114 3334 1.287425 GTCCGAAGCCGTAAATGGAG 58.713 55.000 0.00 0.00 0.00 3.86
3115 3335 0.458889 CGTCCGAAGCCGTAAATGGA 60.459 55.000 0.00 0.00 0.00 3.41
3116 3336 0.458889 TCGTCCGAAGCCGTAAATGG 60.459 55.000 0.00 0.00 0.00 3.16
3117 3337 1.352114 TTCGTCCGAAGCCGTAAATG 58.648 50.000 0.00 0.00 0.00 2.32
3118 3338 2.083167 TTTCGTCCGAAGCCGTAAAT 57.917 45.000 2.12 0.00 35.38 1.40
3119 3339 1.863267 TTTTCGTCCGAAGCCGTAAA 58.137 45.000 2.12 0.00 35.38 2.01
3120 3340 1.863267 TTTTTCGTCCGAAGCCGTAA 58.137 45.000 2.12 0.00 35.38 3.18
3121 3341 3.584586 TTTTTCGTCCGAAGCCGTA 57.415 47.368 2.12 0.00 35.38 4.02
3122 3342 4.442018 TTTTTCGTCCGAAGCCGT 57.558 50.000 2.12 0.00 35.38 5.68
3136 3356 3.945285 CAGTGTATGATAGGGGCGTTTTT 59.055 43.478 0.00 0.00 0.00 1.94
3137 3357 3.054655 ACAGTGTATGATAGGGGCGTTTT 60.055 43.478 0.00 0.00 0.00 2.43
3138 3358 2.504175 ACAGTGTATGATAGGGGCGTTT 59.496 45.455 0.00 0.00 0.00 3.60
3139 3359 2.116238 ACAGTGTATGATAGGGGCGTT 58.884 47.619 0.00 0.00 0.00 4.84
3140 3360 1.789523 ACAGTGTATGATAGGGGCGT 58.210 50.000 0.00 0.00 0.00 5.68
3141 3361 3.509967 TGATACAGTGTATGATAGGGGCG 59.490 47.826 20.46 0.00 0.00 6.13
3142 3362 4.621747 GCTGATACAGTGTATGATAGGGGC 60.622 50.000 20.46 7.72 33.43 5.80
3143 3363 4.081420 GGCTGATACAGTGTATGATAGGGG 60.081 50.000 20.46 1.36 33.43 4.79
3144 3364 4.081420 GGGCTGATACAGTGTATGATAGGG 60.081 50.000 20.46 1.73 33.43 3.53
3145 3365 4.380973 CGGGCTGATACAGTGTATGATAGG 60.381 50.000 20.46 2.08 33.43 2.57
3146 3366 4.738124 CGGGCTGATACAGTGTATGATAG 58.262 47.826 20.46 15.10 33.43 2.08
3147 3367 3.056821 GCGGGCTGATACAGTGTATGATA 60.057 47.826 20.46 6.00 33.43 2.15
3148 3368 2.289072 GCGGGCTGATACAGTGTATGAT 60.289 50.000 20.46 0.00 33.43 2.45
3149 3369 1.068588 GCGGGCTGATACAGTGTATGA 59.931 52.381 20.46 11.34 33.43 2.15
3150 3370 1.502231 GCGGGCTGATACAGTGTATG 58.498 55.000 20.46 8.24 33.43 2.39
3151 3371 0.032130 CGCGGGCTGATACAGTGTAT 59.968 55.000 15.73 15.73 33.43 2.29
3152 3372 1.435925 CGCGGGCTGATACAGTGTA 59.564 57.895 5.24 5.24 33.43 2.90
3153 3373 2.184322 CGCGGGCTGATACAGTGT 59.816 61.111 0.00 0.00 33.43 3.55
3154 3374 3.264897 GCGCGGGCTGATACAGTG 61.265 66.667 18.33 0.00 35.83 3.66
3155 3375 4.530857 GGCGCGGGCTGATACAGT 62.531 66.667 24.48 0.00 39.81 3.55
3163 3383 3.853698 TTTTTACAGGGCGCGGGCT 62.854 57.895 24.48 6.80 39.81 5.19
3164 3384 3.366915 TTTTTACAGGGCGCGGGC 61.367 61.111 17.31 17.31 38.90 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.