Multiple sequence alignment - TraesCS7D01G166100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G166100 chr7D 100.000 8858 0 0 1 8858 116478479 116469622 0.000000e+00 16358.0
1 TraesCS7D01G166100 chr7A 92.057 4293 226 40 856 5095 120584514 120580284 0.000000e+00 5932.0
2 TraesCS7D01G166100 chr7A 95.047 2241 92 12 5098 7326 120580248 120578015 0.000000e+00 3506.0
3 TraesCS7D01G166100 chr7A 89.310 1029 55 26 7456 8473 120578014 120577030 0.000000e+00 1240.0
4 TraesCS7D01G166100 chr7A 94.634 205 9 2 439 641 120585269 120585065 5.160000e-82 316.0
5 TraesCS7D01G166100 chr7A 80.966 352 30 22 8473 8818 120576330 120576010 2.470000e-60 244.0
6 TraesCS7D01G166100 chr7A 87.574 169 19 2 243 409 120585516 120585348 2.520000e-45 195.0
7 TraesCS7D01G166100 chr7A 100.000 44 0 0 746 789 120584643 120584600 2.050000e-11 82.4
8 TraesCS7D01G166100 chr7A 100.000 35 0 0 650 684 120585071 120585037 2.060000e-06 65.8
9 TraesCS7D01G166100 chr7A 100.000 32 0 0 8689 8720 698758825 698758856 9.600000e-05 60.2
10 TraesCS7D01G166100 chr7B 92.512 3619 183 38 5095 8686 75155060 75151503 0.000000e+00 5101.0
11 TraesCS7D01G166100 chr7B 95.031 1469 49 9 3648 5095 75156558 75155093 0.000000e+00 2287.0
12 TraesCS7D01G166100 chr7B 92.112 1534 81 16 1498 3017 75158969 75157462 0.000000e+00 2126.0
13 TraesCS7D01G166100 chr7B 91.311 633 53 2 3014 3645 75157352 75156721 0.000000e+00 863.0
14 TraesCS7D01G166100 chr7B 85.355 676 28 27 799 1442 75159615 75158979 1.250000e-177 634.0
15 TraesCS7D01G166100 chr7B 86.095 525 34 16 305 803 75160156 75159645 6.090000e-146 529.0
16 TraesCS7D01G166100 chr7B 100.000 32 0 0 8689 8720 488140628 488140659 9.600000e-05 60.2
17 TraesCS7D01G166100 chr6B 85.255 373 55 0 6588 6960 640581359 640581731 1.400000e-102 385.0
18 TraesCS7D01G166100 chr6D 86.158 354 49 0 5982 6335 424829528 424829881 5.020000e-102 383.0
19 TraesCS7D01G166100 chr6D 100.000 32 0 0 8689 8720 424298474 424298443 9.600000e-05 60.2
20 TraesCS7D01G166100 chr6A 85.876 354 50 0 5982 6335 569691465 569691818 2.330000e-100 377.0
21 TraesCS7D01G166100 chr5D 100.000 32 0 0 8689 8720 37856599 37856568 9.600000e-05 60.2
22 TraesCS7D01G166100 chr5A 100.000 32 0 0 8689 8720 648890090 648890059 9.600000e-05 60.2
23 TraesCS7D01G166100 chr4D 100.000 32 0 0 8689 8720 489166488 489166519 9.600000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G166100 chr7D 116469622 116478479 8857 True 16358.000000 16358 100.000000 1 8858 1 chr7D.!!$R1 8857
1 TraesCS7D01G166100 chr7A 120576010 120585516 9506 True 1447.650000 5932 92.448500 243 8818 8 chr7A.!!$R1 8575
2 TraesCS7D01G166100 chr7B 75151503 75160156 8653 True 1923.333333 5101 90.402667 305 8686 6 chr7B.!!$R1 8381

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
84 85 0.033894 TGGCTGGCATGTCATGTGAT 60.034 50.000 14.26 0.00 0.00 3.06 F
839 1274 0.036875 CCAACCAGGAACTCACTCCC 59.963 60.000 0.00 0.00 41.22 4.30 F
1826 2313 0.394899 GCTACCATCTTGGGCAGCTT 60.395 55.000 12.55 0.00 43.37 3.74 F
2402 2895 0.110678 TTGGTGGATTTGGGCGTACA 59.889 50.000 0.00 0.00 0.00 2.90 F
3269 3888 0.105039 GCTTGACTGGGGAGATACCG 59.895 60.000 0.00 0.00 40.11 4.02 F
3272 3891 0.106167 TGACTGGGGAGATACCGGAG 60.106 60.000 9.46 0.00 40.11 4.63 F
3627 4249 0.758734 TGCTGTGCTGTAAGTCCTGT 59.241 50.000 0.00 0.00 35.30 4.00 F
3645 4267 1.274447 TGTGATGAGCTCTGTGTCCTG 59.726 52.381 16.19 0.00 0.00 3.86 F
3646 4268 1.547820 GTGATGAGCTCTGTGTCCTGA 59.452 52.381 16.19 0.00 0.00 3.86 F
5539 6375 0.329596 GTTCCTCCAGCCACCAAGAT 59.670 55.000 0.00 0.00 0.00 2.40 F
6679 7523 0.036732 TTCACCATGACTGCAGTCCC 59.963 55.000 37.23 19.92 44.15 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1038 1473 0.179062 CGAGGAGGAAGGCAATGAGG 60.179 60.000 0.00 0.00 0.00 3.86 R
2250 2739 0.323629 ATTTCGCCCTCGAGGTTGAA 59.676 50.000 29.25 26.32 46.34 2.69 R
3252 3871 0.337082 TCCGGTATCTCCCCAGTCAA 59.663 55.000 0.00 0.00 0.00 3.18 R
4171 4953 1.149148 GGTTCCTGAGAAACACGAGC 58.851 55.000 0.00 0.00 39.68 5.03 R
5195 6031 1.186200 TCAGTGAAGAGACATCCCCG 58.814 55.000 0.00 0.00 0.00 5.73 R
5261 6097 1.805943 GCCAAACATTCAAACATGCCC 59.194 47.619 0.00 0.00 0.00 5.36 R
5354 6190 1.567504 ACCGTGAGAAGTTGTTGTCG 58.432 50.000 0.00 0.00 0.00 4.35 R
5454 6290 1.696097 GCTGAAGGAAGGGCCGGATA 61.696 60.000 5.05 0.00 43.43 2.59 R
5618 6454 3.382546 GTGCTGCATAGAAAATCCATGGT 59.617 43.478 12.58 0.00 0.00 3.55 R
7406 8256 0.035056 TTCCCTTCCTAAGCAGCAGC 60.035 55.000 0.00 0.00 42.56 5.25 R
8442 9318 0.032117 AGTCCGACCCATCTCATCCA 60.032 55.000 0.00 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.709170 GAGGATCTCGAGCCGAAGA 58.291 57.895 7.81 0.00 42.82 2.87
26 27 1.243902 GAGGATCTCGAGCCGAAGAT 58.756 55.000 7.81 0.00 42.82 2.40
27 28 2.428491 GAGGATCTCGAGCCGAAGATA 58.572 52.381 7.81 0.00 42.82 1.98
28 29 3.013921 GAGGATCTCGAGCCGAAGATAT 58.986 50.000 7.81 0.00 42.82 1.63
29 30 3.426615 AGGATCTCGAGCCGAAGATATT 58.573 45.455 7.81 0.00 42.82 1.28
30 31 4.590918 AGGATCTCGAGCCGAAGATATTA 58.409 43.478 7.81 0.00 42.82 0.98
31 32 5.197451 AGGATCTCGAGCCGAAGATATTAT 58.803 41.667 7.81 0.00 42.82 1.28
32 33 5.654650 AGGATCTCGAGCCGAAGATATTATT 59.345 40.000 7.81 0.00 42.82 1.40
33 34 6.153680 AGGATCTCGAGCCGAAGATATTATTT 59.846 38.462 7.81 0.00 42.82 1.40
34 35 6.254589 GGATCTCGAGCCGAAGATATTATTTG 59.745 42.308 7.81 0.00 34.74 2.32
35 36 5.470368 TCTCGAGCCGAAGATATTATTTGG 58.530 41.667 7.81 4.27 34.74 3.28
41 42 5.288543 CCGAAGATATTATTTGGCTGCTC 57.711 43.478 0.00 0.00 0.00 4.26
42 43 4.143030 CCGAAGATATTATTTGGCTGCTCG 60.143 45.833 0.00 0.00 0.00 5.03
43 44 4.667668 CGAAGATATTATTTGGCTGCTCGC 60.668 45.833 0.00 0.00 38.13 5.03
44 45 4.013267 AGATATTATTTGGCTGCTCGCT 57.987 40.909 0.00 0.00 39.13 4.93
45 46 4.392940 AGATATTATTTGGCTGCTCGCTT 58.607 39.130 0.00 0.00 39.13 4.68
46 47 2.857592 ATTATTTGGCTGCTCGCTTG 57.142 45.000 0.00 0.00 39.13 4.01
47 48 0.171007 TTATTTGGCTGCTCGCTTGC 59.829 50.000 0.00 0.00 39.13 4.01
48 49 0.677731 TATTTGGCTGCTCGCTTGCT 60.678 50.000 0.00 0.00 39.13 3.91
49 50 1.930908 ATTTGGCTGCTCGCTTGCTC 61.931 55.000 0.00 0.78 39.13 4.26
50 51 3.830464 TTGGCTGCTCGCTTGCTCA 62.830 57.895 0.00 2.73 39.13 4.26
51 52 3.052082 GGCTGCTCGCTTGCTCAA 61.052 61.111 0.00 0.00 39.13 3.02
52 53 2.404995 GGCTGCTCGCTTGCTCAAT 61.405 57.895 0.00 0.00 39.13 2.57
53 54 1.226323 GCTGCTCGCTTGCTCAATG 60.226 57.895 0.00 0.00 35.14 2.82
54 55 1.919956 GCTGCTCGCTTGCTCAATGT 61.920 55.000 0.00 0.00 35.14 2.71
55 56 0.179197 CTGCTCGCTTGCTCAATGTG 60.179 55.000 0.00 0.00 0.00 3.21
56 57 0.603439 TGCTCGCTTGCTCAATGTGA 60.603 50.000 0.00 0.00 0.00 3.58
57 58 0.731417 GCTCGCTTGCTCAATGTGAT 59.269 50.000 0.00 0.00 0.00 3.06
58 59 1.131883 GCTCGCTTGCTCAATGTGATT 59.868 47.619 0.00 0.00 0.00 2.57
59 60 2.782163 CTCGCTTGCTCAATGTGATTG 58.218 47.619 0.00 0.00 41.57 2.67
60 61 1.135603 TCGCTTGCTCAATGTGATTGC 60.136 47.619 0.00 0.00 40.05 3.56
61 62 1.135489 CGCTTGCTCAATGTGATTGCT 60.135 47.619 0.00 0.00 40.05 3.91
62 63 2.259618 GCTTGCTCAATGTGATTGCTG 58.740 47.619 0.00 0.00 40.05 4.41
63 64 2.352421 GCTTGCTCAATGTGATTGCTGT 60.352 45.455 0.00 0.00 40.05 4.40
64 65 3.859627 GCTTGCTCAATGTGATTGCTGTT 60.860 43.478 0.00 0.00 40.05 3.16
65 66 4.304110 CTTGCTCAATGTGATTGCTGTTT 58.696 39.130 0.00 0.00 40.05 2.83
66 67 3.644823 TGCTCAATGTGATTGCTGTTTG 58.355 40.909 0.00 0.00 40.05 2.93
67 68 2.991190 GCTCAATGTGATTGCTGTTTGG 59.009 45.455 0.00 0.00 40.05 3.28
68 69 2.991190 CTCAATGTGATTGCTGTTTGGC 59.009 45.455 0.00 0.00 40.05 4.52
69 70 2.629137 TCAATGTGATTGCTGTTTGGCT 59.371 40.909 0.00 0.00 40.05 4.75
70 71 2.734606 CAATGTGATTGCTGTTTGGCTG 59.265 45.455 0.00 0.00 32.92 4.85
71 72 0.675083 TGTGATTGCTGTTTGGCTGG 59.325 50.000 0.00 0.00 0.00 4.85
72 73 0.668401 GTGATTGCTGTTTGGCTGGC 60.668 55.000 0.00 0.00 0.00 4.85
73 74 1.114119 TGATTGCTGTTTGGCTGGCA 61.114 50.000 0.00 0.00 0.00 4.92
74 75 0.248289 GATTGCTGTTTGGCTGGCAT 59.752 50.000 4.22 0.00 34.59 4.40
75 76 0.036765 ATTGCTGTTTGGCTGGCATG 60.037 50.000 4.22 0.00 34.59 4.06
76 77 1.401318 TTGCTGTTTGGCTGGCATGT 61.401 50.000 4.22 0.00 34.59 3.21
77 78 1.080298 GCTGTTTGGCTGGCATGTC 60.080 57.895 4.22 0.00 0.00 3.06
78 79 1.808531 GCTGTTTGGCTGGCATGTCA 61.809 55.000 4.22 0.00 0.00 3.58
79 80 0.892755 CTGTTTGGCTGGCATGTCAT 59.107 50.000 0.00 0.00 0.00 3.06
80 81 0.604073 TGTTTGGCTGGCATGTCATG 59.396 50.000 0.00 8.56 0.00 3.07
81 82 0.604578 GTTTGGCTGGCATGTCATGT 59.395 50.000 14.26 0.00 0.00 3.21
82 83 0.604073 TTTGGCTGGCATGTCATGTG 59.396 50.000 14.26 6.49 0.00 3.21
83 84 0.251253 TTGGCTGGCATGTCATGTGA 60.251 50.000 14.26 0.78 0.00 3.58
84 85 0.033894 TGGCTGGCATGTCATGTGAT 60.034 50.000 14.26 0.00 0.00 3.06
85 86 0.666913 GGCTGGCATGTCATGTGATC 59.333 55.000 14.26 3.34 0.00 2.92
86 87 1.676746 GCTGGCATGTCATGTGATCT 58.323 50.000 14.26 0.00 0.00 2.75
87 88 2.022195 GCTGGCATGTCATGTGATCTT 58.978 47.619 14.26 0.00 0.00 2.40
88 89 3.208594 GCTGGCATGTCATGTGATCTTA 58.791 45.455 14.26 0.00 0.00 2.10
89 90 3.003068 GCTGGCATGTCATGTGATCTTAC 59.997 47.826 14.26 0.00 0.00 2.34
90 91 4.193865 CTGGCATGTCATGTGATCTTACA 58.806 43.478 14.26 0.00 34.63 2.41
91 92 4.784177 TGGCATGTCATGTGATCTTACAT 58.216 39.130 14.26 0.00 41.77 2.29
92 93 5.195185 TGGCATGTCATGTGATCTTACATT 58.805 37.500 14.26 0.00 39.17 2.71
93 94 5.653330 TGGCATGTCATGTGATCTTACATTT 59.347 36.000 14.26 0.00 39.17 2.32
94 95 5.975344 GGCATGTCATGTGATCTTACATTTG 59.025 40.000 14.26 0.00 39.17 2.32
95 96 5.975344 GCATGTCATGTGATCTTACATTTGG 59.025 40.000 14.26 0.00 39.17 3.28
96 97 6.500910 CATGTCATGTGATCTTACATTTGGG 58.499 40.000 4.53 0.00 39.17 4.12
97 98 4.949238 TGTCATGTGATCTTACATTTGGGG 59.051 41.667 0.00 0.00 39.17 4.96
98 99 3.953612 TCATGTGATCTTACATTTGGGGC 59.046 43.478 0.00 0.00 39.17 5.80
99 100 2.364632 TGTGATCTTACATTTGGGGCG 58.635 47.619 0.00 0.00 0.00 6.13
100 101 1.676006 GTGATCTTACATTTGGGGCGG 59.324 52.381 0.00 0.00 0.00 6.13
101 102 1.562008 TGATCTTACATTTGGGGCGGA 59.438 47.619 0.00 0.00 0.00 5.54
102 103 2.222027 GATCTTACATTTGGGGCGGAG 58.778 52.381 0.00 0.00 0.00 4.63
103 104 0.254747 TCTTACATTTGGGGCGGAGG 59.745 55.000 0.00 0.00 0.00 4.30
104 105 0.751643 CTTACATTTGGGGCGGAGGG 60.752 60.000 0.00 0.00 0.00 4.30
105 106 1.208844 TTACATTTGGGGCGGAGGGA 61.209 55.000 0.00 0.00 0.00 4.20
106 107 1.632018 TACATTTGGGGCGGAGGGAG 61.632 60.000 0.00 0.00 0.00 4.30
107 108 2.614013 ATTTGGGGCGGAGGGAGT 60.614 61.111 0.00 0.00 0.00 3.85
108 109 1.307517 ATTTGGGGCGGAGGGAGTA 60.308 57.895 0.00 0.00 0.00 2.59
109 110 1.632965 ATTTGGGGCGGAGGGAGTAC 61.633 60.000 0.00 0.00 0.00 2.73
110 111 2.758852 TTTGGGGCGGAGGGAGTACT 62.759 60.000 0.00 0.00 0.00 2.73
111 112 3.155167 GGGGCGGAGGGAGTACTG 61.155 72.222 0.00 0.00 0.00 2.74
112 113 2.363925 GGGCGGAGGGAGTACTGT 60.364 66.667 0.00 0.00 0.00 3.55
113 114 1.988406 GGGCGGAGGGAGTACTGTT 60.988 63.158 0.00 0.00 0.00 3.16
114 115 1.551019 GGGCGGAGGGAGTACTGTTT 61.551 60.000 0.00 0.00 0.00 2.83
115 116 0.323957 GGCGGAGGGAGTACTGTTTT 59.676 55.000 0.00 0.00 0.00 2.43
116 117 1.439679 GCGGAGGGAGTACTGTTTTG 58.560 55.000 0.00 0.00 0.00 2.44
117 118 1.270678 GCGGAGGGAGTACTGTTTTGT 60.271 52.381 0.00 0.00 0.00 2.83
118 119 2.413837 CGGAGGGAGTACTGTTTTGTG 58.586 52.381 0.00 0.00 0.00 3.33
119 120 2.152016 GGAGGGAGTACTGTTTTGTGC 58.848 52.381 0.00 0.00 0.00 4.57
120 121 2.152016 GAGGGAGTACTGTTTTGTGCC 58.848 52.381 0.00 0.00 0.00 5.01
121 122 1.774856 AGGGAGTACTGTTTTGTGCCT 59.225 47.619 0.00 0.00 0.00 4.75
122 123 2.174854 AGGGAGTACTGTTTTGTGCCTT 59.825 45.455 0.00 0.00 0.00 4.35
123 124 2.956333 GGGAGTACTGTTTTGTGCCTTT 59.044 45.455 0.00 0.00 0.00 3.11
124 125 4.139038 GGGAGTACTGTTTTGTGCCTTTA 58.861 43.478 0.00 0.00 0.00 1.85
125 126 4.765339 GGGAGTACTGTTTTGTGCCTTTAT 59.235 41.667 0.00 0.00 0.00 1.40
126 127 5.941647 GGGAGTACTGTTTTGTGCCTTTATA 59.058 40.000 0.00 0.00 0.00 0.98
127 128 6.602009 GGGAGTACTGTTTTGTGCCTTTATAT 59.398 38.462 0.00 0.00 0.00 0.86
128 129 7.771826 GGGAGTACTGTTTTGTGCCTTTATATA 59.228 37.037 0.00 0.00 0.00 0.86
129 130 9.338622 GGAGTACTGTTTTGTGCCTTTATATAT 57.661 33.333 0.00 0.00 0.00 0.86
134 135 9.243105 ACTGTTTTGTGCCTTTATATATTCTGT 57.757 29.630 0.00 0.00 0.00 3.41
159 160 9.310716 GTATAAACCCATAATATTCTACTCCGC 57.689 37.037 0.00 0.00 0.00 5.54
160 161 5.818678 AACCCATAATATTCTACTCCGCA 57.181 39.130 0.00 0.00 0.00 5.69
161 162 6.374417 AACCCATAATATTCTACTCCGCAT 57.626 37.500 0.00 0.00 0.00 4.73
162 163 6.374417 ACCCATAATATTCTACTCCGCATT 57.626 37.500 0.00 0.00 0.00 3.56
163 164 6.779860 ACCCATAATATTCTACTCCGCATTT 58.220 36.000 0.00 0.00 0.00 2.32
164 165 6.655003 ACCCATAATATTCTACTCCGCATTTG 59.345 38.462 0.00 0.00 0.00 2.32
165 166 6.878923 CCCATAATATTCTACTCCGCATTTGA 59.121 38.462 0.00 0.00 0.00 2.69
166 167 7.554118 CCCATAATATTCTACTCCGCATTTGAT 59.446 37.037 0.00 0.00 0.00 2.57
167 168 8.950210 CCATAATATTCTACTCCGCATTTGATT 58.050 33.333 0.00 0.00 0.00 2.57
170 171 8.553459 AATATTCTACTCCGCATTTGATTAGG 57.447 34.615 0.00 0.00 0.00 2.69
171 172 5.607939 TTCTACTCCGCATTTGATTAGGA 57.392 39.130 0.00 0.00 0.00 2.94
172 173 5.808366 TCTACTCCGCATTTGATTAGGAT 57.192 39.130 0.00 0.00 0.00 3.24
173 174 6.174720 TCTACTCCGCATTTGATTAGGATT 57.825 37.500 0.00 0.00 0.00 3.01
174 175 6.591935 TCTACTCCGCATTTGATTAGGATTT 58.408 36.000 0.00 0.00 0.00 2.17
175 176 7.054124 TCTACTCCGCATTTGATTAGGATTTT 58.946 34.615 0.00 0.00 0.00 1.82
176 177 6.136541 ACTCCGCATTTGATTAGGATTTTC 57.863 37.500 0.00 0.00 0.00 2.29
177 178 5.652014 ACTCCGCATTTGATTAGGATTTTCA 59.348 36.000 0.00 0.00 0.00 2.69
178 179 5.890334 TCCGCATTTGATTAGGATTTTCAC 58.110 37.500 0.00 0.00 0.00 3.18
179 180 5.417266 TCCGCATTTGATTAGGATTTTCACA 59.583 36.000 0.00 0.00 0.00 3.58
180 181 6.071672 TCCGCATTTGATTAGGATTTTCACAA 60.072 34.615 0.00 0.00 0.00 3.33
181 182 6.034898 CCGCATTTGATTAGGATTTTCACAAC 59.965 38.462 0.00 0.00 0.00 3.32
182 183 6.585702 CGCATTTGATTAGGATTTTCACAACA 59.414 34.615 0.00 0.00 0.00 3.33
183 184 7.116090 CGCATTTGATTAGGATTTTCACAACAA 59.884 33.333 0.00 0.00 0.00 2.83
184 185 8.938906 GCATTTGATTAGGATTTTCACAACAAT 58.061 29.630 0.00 0.00 0.00 2.71
190 191 9.573133 GATTAGGATTTTCACAACAATACAAGG 57.427 33.333 0.00 0.00 0.00 3.61
191 192 6.345096 AGGATTTTCACAACAATACAAGGG 57.655 37.500 0.00 0.00 0.00 3.95
192 193 5.245977 AGGATTTTCACAACAATACAAGGGG 59.754 40.000 0.00 0.00 0.00 4.79
193 194 4.946478 TTTTCACAACAATACAAGGGGG 57.054 40.909 0.00 0.00 0.00 5.40
194 195 1.917872 TCACAACAATACAAGGGGGC 58.082 50.000 0.00 0.00 0.00 5.80
195 196 1.427368 TCACAACAATACAAGGGGGCT 59.573 47.619 0.00 0.00 0.00 5.19
196 197 1.545582 CACAACAATACAAGGGGGCTG 59.454 52.381 0.00 0.00 0.00 4.85
197 198 1.185315 CAACAATACAAGGGGGCTGG 58.815 55.000 0.00 0.00 0.00 4.85
198 199 0.041090 AACAATACAAGGGGGCTGGG 59.959 55.000 0.00 0.00 0.00 4.45
199 200 0.849094 ACAATACAAGGGGGCTGGGA 60.849 55.000 0.00 0.00 0.00 4.37
200 201 0.557729 CAATACAAGGGGGCTGGGAT 59.442 55.000 0.00 0.00 0.00 3.85
201 202 0.853530 AATACAAGGGGGCTGGGATC 59.146 55.000 0.00 0.00 0.00 3.36
202 203 1.068352 ATACAAGGGGGCTGGGATCC 61.068 60.000 1.92 1.92 0.00 3.36
203 204 2.208562 TACAAGGGGGCTGGGATCCT 62.209 60.000 12.58 0.00 0.00 3.24
204 205 2.130576 AAGGGGGCTGGGATCCTT 59.869 61.111 12.58 0.00 35.03 3.36
205 206 0.993509 CAAGGGGGCTGGGATCCTTA 60.994 60.000 12.58 0.03 37.50 2.69
206 207 0.699231 AAGGGGGCTGGGATCCTTAG 60.699 60.000 12.58 11.60 37.79 2.18
207 208 1.386057 GGGGGCTGGGATCCTTAGT 60.386 63.158 12.58 0.00 0.00 2.24
208 209 0.104620 GGGGGCTGGGATCCTTAGTA 60.105 60.000 12.58 0.00 0.00 1.82
209 210 1.353091 GGGGCTGGGATCCTTAGTAG 58.647 60.000 12.58 4.17 0.00 2.57
210 211 1.414685 GGGGCTGGGATCCTTAGTAGT 60.415 57.143 12.58 0.00 0.00 2.73
211 212 2.158204 GGGGCTGGGATCCTTAGTAGTA 60.158 54.545 12.58 0.00 0.00 1.82
212 213 3.504343 GGGGCTGGGATCCTTAGTAGTAT 60.504 52.174 12.58 0.00 0.00 2.12
213 214 3.515901 GGGCTGGGATCCTTAGTAGTATG 59.484 52.174 12.58 0.00 0.00 2.39
214 215 3.515901 GGCTGGGATCCTTAGTAGTATGG 59.484 52.174 12.58 3.54 0.00 2.74
215 216 4.161102 GCTGGGATCCTTAGTAGTATGGT 58.839 47.826 12.58 0.00 0.00 3.55
216 217 4.593634 GCTGGGATCCTTAGTAGTATGGTT 59.406 45.833 12.58 1.98 0.00 3.67
217 218 5.071923 GCTGGGATCCTTAGTAGTATGGTTT 59.928 44.000 12.58 0.18 0.00 3.27
218 219 6.409349 GCTGGGATCCTTAGTAGTATGGTTTT 60.409 42.308 12.58 0.00 0.00 2.43
219 220 7.133133 TGGGATCCTTAGTAGTATGGTTTTC 57.867 40.000 12.58 5.75 0.00 2.29
220 221 6.183360 TGGGATCCTTAGTAGTATGGTTTTCG 60.183 42.308 12.58 0.00 0.00 3.46
221 222 6.183360 GGGATCCTTAGTAGTATGGTTTTCGT 60.183 42.308 12.58 0.00 0.00 3.85
222 223 7.014615 GGGATCCTTAGTAGTATGGTTTTCGTA 59.985 40.741 12.58 0.00 0.00 3.43
223 224 7.864882 GGATCCTTAGTAGTATGGTTTTCGTAC 59.135 40.741 3.84 0.00 37.96 3.67
224 225 6.785191 TCCTTAGTAGTATGGTTTTCGTACG 58.215 40.000 9.53 9.53 41.51 3.67
225 226 6.597672 TCCTTAGTAGTATGGTTTTCGTACGA 59.402 38.462 15.28 15.28 41.51 3.43
226 227 7.283127 TCCTTAGTAGTATGGTTTTCGTACGAT 59.717 37.037 20.27 5.34 41.51 3.73
227 228 7.917505 CCTTAGTAGTATGGTTTTCGTACGATT 59.082 37.037 20.27 3.02 41.51 3.34
228 229 9.294030 CTTAGTAGTATGGTTTTCGTACGATTT 57.706 33.333 20.27 3.37 41.51 2.17
229 230 9.638239 TTAGTAGTATGGTTTTCGTACGATTTT 57.362 29.630 20.27 4.07 41.51 1.82
231 232 9.807649 AGTAGTATGGTTTTCGTACGATTTTAT 57.192 29.630 20.27 12.25 41.51 1.40
236 237 7.323046 TGGTTTTCGTACGATTTTATTTTGC 57.677 32.000 20.27 1.09 0.00 3.68
237 238 6.916387 TGGTTTTCGTACGATTTTATTTTGCA 59.084 30.769 20.27 0.00 0.00 4.08
238 239 7.434307 TGGTTTTCGTACGATTTTATTTTGCAA 59.566 29.630 20.27 2.52 0.00 4.08
239 240 8.429299 GGTTTTCGTACGATTTTATTTTGCAAT 58.571 29.630 20.27 0.00 0.00 3.56
240 241 9.233960 GTTTTCGTACGATTTTATTTTGCAATG 57.766 29.630 20.27 0.00 0.00 2.82
241 242 6.547493 TCGTACGATTTTATTTTGCAATGC 57.453 33.333 15.28 0.00 0.00 3.56
285 286 7.339212 TCATTCACTCAAAACTCTTGAAAGGAA 59.661 33.333 0.00 0.00 30.34 3.36
290 291 7.761249 CACTCAAAACTCTTGAAAGGAACATTT 59.239 33.333 0.00 0.00 0.00 2.32
291 292 7.761249 ACTCAAAACTCTTGAAAGGAACATTTG 59.239 33.333 0.00 0.00 0.00 2.32
299 300 7.666623 TCTTGAAAGGAACATTTGGTTTATCC 58.333 34.615 0.00 0.00 40.63 2.59
300 301 6.985653 TGAAAGGAACATTTGGTTTATCCA 57.014 33.333 0.00 0.00 45.60 3.41
314 315 5.467399 TGGTTTATCCAACGACACAACTAAG 59.533 40.000 0.00 0.00 44.12 2.18
315 316 5.697633 GGTTTATCCAACGACACAACTAAGA 59.302 40.000 0.00 0.00 36.05 2.10
364 365 3.133183 TGGACATGGCATTTCAATCATGG 59.867 43.478 15.00 0.00 40.69 3.66
423 456 9.667107 CTGAAATTATTACTTCTACTTCCACCA 57.333 33.333 0.00 0.00 0.00 4.17
427 460 4.903045 TTACTTCTACTTCCACCAAGGG 57.097 45.455 0.00 0.00 36.26 3.95
460 513 3.654020 GCGAGCATTGATCCGCCC 61.654 66.667 7.27 0.00 41.59 6.13
480 533 1.304282 GCCCCACATGTCATGGAGT 59.696 57.895 17.08 0.00 39.87 3.85
481 534 0.749454 GCCCCACATGTCATGGAGTC 60.749 60.000 17.08 0.00 39.87 3.36
536 590 0.838608 TCGAGTCCTACTCCTCCTCC 59.161 60.000 1.63 0.00 42.12 4.30
537 591 0.841289 CGAGTCCTACTCCTCCTCCT 59.159 60.000 1.63 0.00 42.12 3.69
617 672 3.364964 TCCATCCCCCGTCCCTCT 61.365 66.667 0.00 0.00 0.00 3.69
636 691 3.077556 CTCTCTCCACCACCCCCG 61.078 72.222 0.00 0.00 0.00 5.73
720 778 4.537433 GCTAGCCCTGCCACTCCG 62.537 72.222 2.29 0.00 0.00 4.63
721 779 4.537433 CTAGCCCTGCCACTCCGC 62.537 72.222 0.00 0.00 0.00 5.54
838 1273 0.765510 ACCAACCAGGAACTCACTCC 59.234 55.000 0.00 0.00 41.22 3.85
839 1274 0.036875 CCAACCAGGAACTCACTCCC 59.963 60.000 0.00 0.00 41.22 4.30
840 1275 0.036875 CAACCAGGAACTCACTCCCC 59.963 60.000 0.00 0.00 34.60 4.81
841 1276 0.401395 AACCAGGAACTCACTCCCCA 60.401 55.000 0.00 0.00 34.60 4.96
842 1277 0.838122 ACCAGGAACTCACTCCCCAG 60.838 60.000 0.00 0.00 34.60 4.45
843 1278 0.838122 CCAGGAACTCACTCCCCAGT 60.838 60.000 0.00 0.00 34.60 4.00
915 1350 3.966026 GAGCTTCGCACGCCGTACT 62.966 63.158 0.00 0.00 38.35 2.73
916 1351 3.542742 GCTTCGCACGCCGTACTC 61.543 66.667 0.00 0.00 38.35 2.59
917 1352 3.238241 CTTCGCACGCCGTACTCG 61.238 66.667 0.00 0.00 38.35 4.18
926 1361 4.883300 CCGTACTCGCTCGCCGTC 62.883 72.222 0.00 0.00 38.35 4.79
928 1363 4.549516 GTACTCGCTCGCCGTCCC 62.550 72.222 0.00 0.00 38.35 4.46
1209 1664 1.634702 CTGCAAGGACTTCTACGAGC 58.365 55.000 0.00 0.00 0.00 5.03
1329 1793 1.768077 CCTCCTCCTCCCACCATCC 60.768 68.421 0.00 0.00 0.00 3.51
1453 1925 5.211973 TCTGCTCTATCCACTATCCTGTTT 58.788 41.667 0.00 0.00 0.00 2.83
1454 1926 5.069648 TCTGCTCTATCCACTATCCTGTTTG 59.930 44.000 0.00 0.00 0.00 2.93
1477 1949 0.886563 CTGCCTTTTCCTCTGCCTTG 59.113 55.000 0.00 0.00 0.00 3.61
1491 1963 5.452356 CCTCTGCCTTGTTCTGTTTCAAAAT 60.452 40.000 0.00 0.00 0.00 1.82
1495 1967 4.507756 GCCTTGTTCTGTTTCAAAATGGAC 59.492 41.667 0.00 0.00 0.00 4.02
1496 1968 5.682212 GCCTTGTTCTGTTTCAAAATGGACT 60.682 40.000 0.00 0.00 0.00 3.85
1497 1969 5.979517 CCTTGTTCTGTTTCAAAATGGACTC 59.020 40.000 0.00 0.00 0.00 3.36
1498 1970 6.183360 CCTTGTTCTGTTTCAAAATGGACTCT 60.183 38.462 0.00 0.00 0.00 3.24
1499 1971 6.135290 TGTTCTGTTTCAAAATGGACTCTG 57.865 37.500 0.00 0.00 0.00 3.35
1500 1972 4.836125 TCTGTTTCAAAATGGACTCTGC 57.164 40.909 0.00 0.00 0.00 4.26
1501 1973 3.569701 TCTGTTTCAAAATGGACTCTGCC 59.430 43.478 0.00 0.00 0.00 4.85
1502 1974 3.565307 TGTTTCAAAATGGACTCTGCCT 58.435 40.909 0.00 0.00 0.00 4.75
1503 1975 3.960102 TGTTTCAAAATGGACTCTGCCTT 59.040 39.130 0.00 0.00 0.00 4.35
1504 1976 4.202141 TGTTTCAAAATGGACTCTGCCTTG 60.202 41.667 0.00 0.00 0.00 3.61
1505 1977 3.228188 TCAAAATGGACTCTGCCTTGT 57.772 42.857 0.00 0.00 0.00 3.16
1506 1978 3.565307 TCAAAATGGACTCTGCCTTGTT 58.435 40.909 0.00 0.00 0.00 2.83
1507 1979 3.569701 TCAAAATGGACTCTGCCTTGTTC 59.430 43.478 0.00 0.00 0.00 3.18
1508 1980 3.515602 AAATGGACTCTGCCTTGTTCT 57.484 42.857 0.00 0.00 0.00 3.01
1509 1981 2.486472 ATGGACTCTGCCTTGTTCTG 57.514 50.000 0.00 0.00 0.00 3.02
1510 1982 1.131638 TGGACTCTGCCTTGTTCTGT 58.868 50.000 0.00 0.00 0.00 3.41
1511 1983 1.490490 TGGACTCTGCCTTGTTCTGTT 59.510 47.619 0.00 0.00 0.00 3.16
1512 1984 2.092429 TGGACTCTGCCTTGTTCTGTTT 60.092 45.455 0.00 0.00 0.00 2.83
1513 1985 2.550180 GGACTCTGCCTTGTTCTGTTTC 59.450 50.000 0.00 0.00 0.00 2.78
1514 1986 3.206150 GACTCTGCCTTGTTCTGTTTCA 58.794 45.455 0.00 0.00 0.00 2.69
1515 1987 3.620488 ACTCTGCCTTGTTCTGTTTCAA 58.380 40.909 0.00 0.00 0.00 2.69
1516 1988 4.016444 ACTCTGCCTTGTTCTGTTTCAAA 58.984 39.130 0.00 0.00 0.00 2.69
1517 1989 4.462483 ACTCTGCCTTGTTCTGTTTCAAAA 59.538 37.500 0.00 0.00 0.00 2.44
1518 1990 4.743493 TCTGCCTTGTTCTGTTTCAAAAC 58.257 39.130 0.00 0.00 39.33 2.43
1519 1991 3.855858 TGCCTTGTTCTGTTTCAAAACC 58.144 40.909 3.33 0.00 38.11 3.27
1520 1992 2.857748 GCCTTGTTCTGTTTCAAAACCG 59.142 45.455 3.33 0.00 38.11 4.44
1521 1993 3.443976 CCTTGTTCTGTTTCAAAACCGG 58.556 45.455 0.00 0.00 38.11 5.28
1539 2011 2.021457 CGGTGGTTTGGAGTTTGAACT 58.979 47.619 0.00 0.00 43.16 3.01
1567 2039 2.418368 TCTTGCACTCTTTGTGGTGT 57.582 45.000 0.00 0.00 46.27 4.16
1588 2062 5.795939 GTGTAAGAGTCGTTCAGATGTACTG 59.204 44.000 0.00 0.00 46.97 2.74
1685 2164 1.247567 GCACATTGCTAACCACCAGT 58.752 50.000 0.00 0.00 40.96 4.00
1686 2165 1.068333 GCACATTGCTAACCACCAGTG 60.068 52.381 0.00 0.00 40.96 3.66
1702 2181 4.022242 CACCAGTGATAATCCTAGTACCCG 60.022 50.000 0.00 0.00 0.00 5.28
1718 2197 1.287425 CCCGTCGCTTTATTCCTCAC 58.713 55.000 0.00 0.00 0.00 3.51
1770 2257 1.741770 GTTCTTGTGCCGAGCCGAT 60.742 57.895 0.00 0.00 0.00 4.18
1826 2313 0.394899 GCTACCATCTTGGGCAGCTT 60.395 55.000 12.55 0.00 43.37 3.74
1866 2354 2.156098 TCCTTTGTCACCAAATACGGC 58.844 47.619 0.00 0.00 39.72 5.68
1912 2400 5.095490 CCGCCTTTTGTTGTGATCTTTATC 58.905 41.667 0.00 0.00 0.00 1.75
1914 2402 6.024049 CGCCTTTTGTTGTGATCTTTATCTC 58.976 40.000 0.00 0.00 32.93 2.75
1948 2436 3.129287 CGCCCATTTTCTTCTGCTAATGT 59.871 43.478 0.00 0.00 0.00 2.71
1952 2440 4.427312 CATTTTCTTCTGCTAATGTGGCC 58.573 43.478 0.00 0.00 0.00 5.36
1981 2469 7.546667 GGTTAATGGTTTTACACTATCTCGTCA 59.453 37.037 0.00 0.00 0.00 4.35
2126 2614 3.989595 GCCGCGCTGTAAGATCGC 61.990 66.667 5.56 0.00 41.14 4.58
2218 2707 4.659874 CGCTGACGCCGCGTTTTT 62.660 61.111 21.18 0.00 45.13 1.94
2250 2739 4.021925 GCAGCAACCTCTCCGGGT 62.022 66.667 0.00 0.00 42.05 5.28
2400 2893 0.402504 ACTTGGTGGATTTGGGCGTA 59.597 50.000 0.00 0.00 0.00 4.42
2402 2895 0.110678 TTGGTGGATTTGGGCGTACA 59.889 50.000 0.00 0.00 0.00 2.90
2403 2896 0.606944 TGGTGGATTTGGGCGTACAC 60.607 55.000 0.00 0.00 0.00 2.90
2404 2897 1.310216 GGTGGATTTGGGCGTACACC 61.310 60.000 0.00 0.00 41.18 4.16
2405 2898 0.322187 GTGGATTTGGGCGTACACCT 60.322 55.000 0.00 0.00 0.00 4.00
2406 2899 0.322098 TGGATTTGGGCGTACACCTG 60.322 55.000 0.00 0.00 0.00 4.00
2407 2900 0.322187 GGATTTGGGCGTACACCTGT 60.322 55.000 0.00 0.00 0.00 4.00
2496 2989 1.540267 GACGCTGTGAGTGGTCTCTTA 59.460 52.381 0.00 0.00 40.98 2.10
2829 3322 8.482429 CAAATTTGAAGATTCTGTAAGTTGCAC 58.518 33.333 13.08 0.00 33.76 4.57
2849 3342 3.826157 CACCTTGGTTCATATGTTGTGGT 59.174 43.478 1.90 2.87 0.00 4.16
2995 3496 6.363357 GTCTTGAATTTCTGTGCCATACAAAC 59.637 38.462 0.00 0.00 39.20 2.93
2997 3498 6.154203 TGAATTTCTGTGCCATACAAACAA 57.846 33.333 0.00 0.00 39.20 2.83
3059 3678 4.882842 TTTCCCTTTCCATTTGGCTAAC 57.117 40.909 0.00 0.00 34.44 2.34
3062 3681 3.075283 TCCCTTTCCATTTGGCTAACTCA 59.925 43.478 0.00 0.00 34.44 3.41
3169 3788 4.514401 ACTTGTAAGTATGCTGCTTACCC 58.486 43.478 18.63 10.04 44.45 3.69
3214 3833 0.669318 TCCTGTTTCTGGCGCTAACG 60.669 55.000 7.64 0.00 44.07 3.18
3233 3852 2.666190 TGCACTCGCTTGACCAGC 60.666 61.111 0.00 0.00 46.31 4.85
3252 3871 3.612860 CAGCGACGTTAAGAACAATAGCT 59.387 43.478 0.00 0.00 31.40 3.32
3269 3888 0.105039 GCTTGACTGGGGAGATACCG 59.895 60.000 0.00 0.00 40.11 4.02
3272 3891 0.106167 TGACTGGGGAGATACCGGAG 60.106 60.000 9.46 0.00 40.11 4.63
3485 4105 6.454795 TGGTCATTTAAACCATTCTTCTTGC 58.545 36.000 0.00 0.00 41.84 4.01
3507 4127 5.879948 CATCGTATGCTTCACAGAGTTAG 57.120 43.478 0.00 0.00 0.00 2.34
3524 4144 7.175641 ACAGAGTTAGCACTAATCTGCAAAATT 59.824 33.333 19.05 0.00 39.86 1.82
3525 4145 8.668353 CAGAGTTAGCACTAATCTGCAAAATTA 58.332 33.333 12.62 0.00 39.86 1.40
3627 4249 0.758734 TGCTGTGCTGTAAGTCCTGT 59.241 50.000 0.00 0.00 35.30 4.00
3638 4260 3.194329 TGTAAGTCCTGTGATGAGCTCTG 59.806 47.826 16.19 0.00 0.00 3.35
3642 4264 1.547820 TCCTGTGATGAGCTCTGTGTC 59.452 52.381 16.19 8.44 0.00 3.67
3645 4267 1.274447 TGTGATGAGCTCTGTGTCCTG 59.726 52.381 16.19 0.00 0.00 3.86
3646 4268 1.547820 GTGATGAGCTCTGTGTCCTGA 59.452 52.381 16.19 0.00 0.00 3.86
3672 4454 9.590451 AATTCTTTCTTGTTGGTGCAATATATG 57.410 29.630 0.00 0.00 0.00 1.78
3701 4483 5.307976 TGATATGACCTCTAACCATTCCAGG 59.692 44.000 0.00 0.00 0.00 4.45
3756 4538 2.353406 CCGTCGATACTGGGAAACTTGT 60.353 50.000 0.00 0.00 0.00 3.16
3785 4567 3.390135 TGAGAAACTGTAAGCTTCCGTG 58.610 45.455 0.00 0.00 39.82 4.94
3919 4701 5.009631 CCAGAACTTGGGAATATGTCAACA 58.990 41.667 0.00 0.00 43.75 3.33
3960 4742 9.995003 AGTGGCATCATTTTTCTTGTTTTTATA 57.005 25.926 0.00 0.00 0.00 0.98
4005 4787 8.824159 TCTGAAATTCTGTTTTTGTTGACAAA 57.176 26.923 5.25 5.25 43.36 2.83
4140 4922 8.239314 TGAAATCTGTAATGATTTTCTGAGTGC 58.761 33.333 4.34 0.00 43.97 4.40
4171 4953 5.971895 AACAAGCAGCTTATGTTTTGTTG 57.028 34.783 7.52 0.00 42.24 3.33
4310 5096 8.925700 CACGCACAGCTTCAGAAATATATATTA 58.074 33.333 8.39 0.00 0.00 0.98
4423 5209 8.568794 ACCTCTTTGTAAGTTCTGATTTTTAGC 58.431 33.333 0.00 0.00 0.00 3.09
4476 5262 7.770801 TTGTGATATGATAAAGTTGACCGAG 57.229 36.000 0.00 0.00 0.00 4.63
4487 5273 2.140717 GTTGACCGAGTTGTACCCTTG 58.859 52.381 0.00 0.00 0.00 3.61
4538 5325 5.824097 TGCATACTGATCTGCAACATTGTAT 59.176 36.000 4.98 0.00 44.87 2.29
4550 5337 5.405873 TGCAACATTGTATGCTTGTTCATTG 59.594 36.000 18.26 0.57 42.97 2.82
4563 5350 5.449862 GCTTGTTCATTGTTGACCTGTGTTA 60.450 40.000 0.00 0.00 0.00 2.41
4668 5455 9.553064 GACATCTTGTAAGTCCAATTATCTCAT 57.447 33.333 0.00 0.00 0.00 2.90
4964 5754 5.594725 TGAGATGTAAGTACCTGGTGATCTC 59.405 44.000 10.23 14.22 36.61 2.75
5104 5940 4.827692 TGTTGCTGTGAGTCCGTATATTT 58.172 39.130 0.00 0.00 0.00 1.40
5119 5955 7.594386 GTCCGTATATTTAGTAGAAGGTTCAGC 59.406 40.741 0.00 0.00 0.00 4.26
5120 5956 6.581542 CCGTATATTTAGTAGAAGGTTCAGCG 59.418 42.308 0.00 0.00 0.00 5.18
5132 5968 2.029828 AGGTTCAGCGTGTAGTCTTCAG 60.030 50.000 0.00 0.00 0.00 3.02
5272 6108 4.751767 AAGAAGTTTTGGGCATGTTTGA 57.248 36.364 0.00 0.00 0.00 2.69
5306 6142 1.593469 CTGACATGATCTTGCTGCTCG 59.407 52.381 8.45 0.00 0.00 5.03
5354 6190 2.436115 GCTGGCGTTGTCCCTACC 60.436 66.667 0.00 0.00 0.00 3.18
5539 6375 0.329596 GTTCCTCCAGCCACCAAGAT 59.670 55.000 0.00 0.00 0.00 2.40
5549 6385 4.379082 CCAGCCACCAAGATAAACGTAAAC 60.379 45.833 0.00 0.00 0.00 2.01
5551 6387 5.007682 AGCCACCAAGATAAACGTAAACAT 58.992 37.500 0.00 0.00 0.00 2.71
5552 6388 5.475564 AGCCACCAAGATAAACGTAAACATT 59.524 36.000 0.00 0.00 0.00 2.71
5553 6389 5.571357 GCCACCAAGATAAACGTAAACATTG 59.429 40.000 0.00 0.00 0.00 2.82
5621 6457 8.790718 GTTTCTAATATACCGTCATCTCTACCA 58.209 37.037 0.00 0.00 0.00 3.25
5782 6618 5.185454 CAAACCAGGTAATGCATCTACAGA 58.815 41.667 0.00 0.00 0.00 3.41
5828 6669 9.429359 CAGTATATCTCTTACTTATTGGCAAGG 57.571 37.037 5.96 1.09 0.00 3.61
5852 6693 2.030412 TTGCCGTGCGAGTCATGT 59.970 55.556 0.00 0.00 0.00 3.21
5854 6695 2.125912 GCCGTGCGAGTCATGTCT 60.126 61.111 0.00 0.00 0.00 3.41
5860 6701 2.645163 GTGCGAGTCATGTCTAGATCG 58.355 52.381 6.78 6.78 0.00 3.69
6336 7177 4.705023 GGGATGTTTTACATGGTAAGTGCT 59.295 41.667 0.00 0.00 39.27 4.40
6361 7202 1.269517 GCAAACTCGTTCCAAATGCCA 60.270 47.619 0.00 0.00 0.00 4.92
6398 7239 5.738909 ACAAGTGATCAATAGCTAGCACTT 58.261 37.500 18.83 11.17 44.60 3.16
6400 7241 7.504403 ACAAGTGATCAATAGCTAGCACTTAT 58.496 34.615 18.83 4.22 42.64 1.73
6471 7312 0.548989 AACACACAACCTGGCCACTA 59.451 50.000 0.00 0.00 0.00 2.74
6524 7365 9.461312 TTGTAGTCCTGCTTATTTATTGATTGT 57.539 29.630 0.00 0.00 0.00 2.71
6679 7523 0.036732 TTCACCATGACTGCAGTCCC 59.963 55.000 37.23 19.92 44.15 4.46
6838 7682 3.239449 TGGCTACATTGATCCCGAGTAT 58.761 45.455 0.00 0.00 0.00 2.12
6910 7754 2.508887 CTGCTCGAGCTGCTGACC 60.509 66.667 35.27 7.21 42.66 4.02
6971 7815 4.263418 ACTCGGTAACTACCTCACTCTCTT 60.263 45.833 4.45 0.00 44.25 2.85
6992 7840 5.243060 TCTTCGTAGTTCTTCAGGTTGATGA 59.757 40.000 0.00 0.00 0.00 2.92
7287 8135 2.287188 GCACTGTCACACTCACCAAATG 60.287 50.000 0.00 0.00 0.00 2.32
7301 8149 5.098893 TCACCAAATGTTGTCAACTTTTCG 58.901 37.500 20.79 18.02 36.84 3.46
7359 8207 7.016957 TGCCTATGATTCAGACCAGATTCTTAT 59.983 37.037 0.00 0.00 0.00 1.73
7365 8213 5.016051 TCAGACCAGATTCTTATGACAGC 57.984 43.478 0.00 0.00 0.00 4.40
7385 8233 6.058183 ACAGCATATCAGGATAAGTTTCACC 58.942 40.000 0.00 0.00 0.00 4.02
7389 8237 6.595682 CATATCAGGATAAGTTTCACCCTGT 58.404 40.000 0.00 0.00 43.54 4.00
7406 8256 6.321435 TCACCCTGTAGTTATCAGATACAGTG 59.679 42.308 9.33 2.36 43.10 3.66
7410 8260 5.592054 TGTAGTTATCAGATACAGTGCTGC 58.408 41.667 0.00 0.00 32.27 5.25
7423 8273 1.028868 GTGCTGCTGCTTAGGAAGGG 61.029 60.000 17.00 0.00 40.48 3.95
7426 8276 2.016096 GCTGCTGCTTAGGAAGGGAAG 61.016 57.143 8.53 0.00 36.03 3.46
7506 8358 2.279741 GTTGCAACGCAGATCCTATCA 58.720 47.619 14.90 0.00 40.61 2.15
7861 8716 0.388134 CCACAACACGGAGTAGGACG 60.388 60.000 0.00 0.00 41.61 4.79
7862 8717 0.388134 CACAACACGGAGTAGGACGG 60.388 60.000 0.00 0.00 41.61 4.79
7863 8718 0.538057 ACAACACGGAGTAGGACGGA 60.538 55.000 0.00 0.00 41.61 4.69
7903 8762 3.620785 AGGCGGCGGAGGATGATC 61.621 66.667 9.78 0.00 0.00 2.92
7913 8772 1.889829 GGAGGATGATCCAGGTAGTCG 59.110 57.143 14.90 0.00 39.61 4.18
7965 8827 5.906073 AGCCCACATTTTGTCTAAATATGC 58.094 37.500 0.00 0.00 34.69 3.14
7967 8829 5.678616 GCCCACATTTTGTCTAAATATGCGT 60.679 40.000 0.00 0.00 34.69 5.24
7971 8833 5.353123 ACATTTTGTCTAAATATGCGTCGGT 59.647 36.000 0.00 0.00 34.69 4.69
7973 8835 2.198406 TGTCTAAATATGCGTCGGTGC 58.802 47.619 0.00 0.00 0.00 5.01
7974 8836 1.525619 GTCTAAATATGCGTCGGTGCC 59.474 52.381 0.00 0.00 0.00 5.01
7975 8837 0.865769 CTAAATATGCGTCGGTGCCC 59.134 55.000 0.00 0.00 0.00 5.36
7994 8856 2.723124 CGGAGGTGAACAAAAATGGG 57.277 50.000 0.00 0.00 0.00 4.00
7995 8857 2.235016 CGGAGGTGAACAAAAATGGGA 58.765 47.619 0.00 0.00 0.00 4.37
7996 8858 2.030274 CGGAGGTGAACAAAAATGGGAC 60.030 50.000 0.00 0.00 0.00 4.46
7997 8859 3.230976 GGAGGTGAACAAAAATGGGACT 58.769 45.455 0.00 0.00 0.00 3.85
8001 8863 3.888930 GGTGAACAAAAATGGGACTCTGA 59.111 43.478 0.00 0.00 0.00 3.27
8003 8865 5.163457 GGTGAACAAAAATGGGACTCTGAAA 60.163 40.000 0.00 0.00 0.00 2.69
8015 8877 0.600255 CTCTGAAACGGTGGCGTTCT 60.600 55.000 0.00 0.00 0.00 3.01
8052 8916 5.355596 AGCCATGTATTCTCTTTCTCTTCG 58.644 41.667 0.00 0.00 0.00 3.79
8054 8918 5.006165 GCCATGTATTCTCTTTCTCTTCGTG 59.994 44.000 0.00 0.00 0.00 4.35
8083 8947 6.781943 TCTTATCTCTAACCTAGTAGGAGGC 58.218 44.000 23.50 0.00 40.65 4.70
8095 8959 2.158385 AGTAGGAGGCTTCGATGGATCT 60.158 50.000 0.00 0.00 0.00 2.75
8096 8960 1.337118 AGGAGGCTTCGATGGATCTC 58.663 55.000 0.00 2.03 0.00 2.75
8097 8961 1.133199 AGGAGGCTTCGATGGATCTCT 60.133 52.381 0.00 0.00 0.00 3.10
8098 8962 1.272212 GGAGGCTTCGATGGATCTCTC 59.728 57.143 0.00 0.00 0.00 3.20
8099 8963 2.238521 GAGGCTTCGATGGATCTCTCT 58.761 52.381 0.00 0.00 0.00 3.10
8100 8964 2.627699 GAGGCTTCGATGGATCTCTCTT 59.372 50.000 0.00 0.00 0.00 2.85
8101 8965 2.364970 AGGCTTCGATGGATCTCTCTTG 59.635 50.000 0.00 0.00 0.00 3.02
8138 9002 1.420138 ACCGTTCTTGGACTGGAATGT 59.580 47.619 0.00 0.00 0.00 2.71
8233 9101 4.367386 ACTAATTCAGTTACCCGAGTCG 57.633 45.455 5.29 5.29 31.59 4.18
8238 9106 1.228675 AGTTACCCGAGTCGGTGGT 60.229 57.895 28.98 22.14 46.80 4.16
8239 9107 1.213799 GTTACCCGAGTCGGTGGTC 59.786 63.158 28.98 13.44 46.80 4.02
8268 9144 0.698818 ATGAACCTGGTGGGAGAACC 59.301 55.000 0.00 0.00 40.94 3.62
8283 9159 4.010349 GGAGAACCAATTCAGTTACCTGG 58.990 47.826 0.00 0.00 37.29 4.45
8440 9316 3.873812 GCCGGATGGTAGGGGGTG 61.874 72.222 5.05 0.00 37.67 4.61
8441 9317 2.041301 CCGGATGGTAGGGGGTGA 60.041 66.667 0.00 0.00 0.00 4.02
8442 9318 1.461461 CCGGATGGTAGGGGGTGAT 60.461 63.158 0.00 0.00 0.00 3.06
8499 10075 5.045012 TCTTTGATGATTGATGGAGGGAG 57.955 43.478 0.00 0.00 0.00 4.30
8684 10266 2.543569 CCATGGAGATGGTAGGGCA 58.456 57.895 5.56 0.00 43.98 5.36
8685 10267 0.399454 CCATGGAGATGGTAGGGCAG 59.601 60.000 5.56 0.00 43.98 4.85
8687 10269 0.769776 ATGGAGATGGTAGGGCAGGG 60.770 60.000 0.00 0.00 0.00 4.45
8688 10270 1.384643 GGAGATGGTAGGGCAGGGT 60.385 63.158 0.00 0.00 0.00 4.34
8689 10271 1.411651 GGAGATGGTAGGGCAGGGTC 61.412 65.000 0.00 0.00 0.00 4.46
8711 10293 3.326210 GCTCCAGCGCTCGATTCG 61.326 66.667 7.13 0.00 0.00 3.34
8712 10294 2.409243 CTCCAGCGCTCGATTCGA 59.591 61.111 7.13 8.70 0.00 3.71
8713 10295 1.226688 CTCCAGCGCTCGATTCGAA 60.227 57.895 7.13 0.00 34.74 3.71
8714 10296 1.475441 CTCCAGCGCTCGATTCGAAC 61.475 60.000 7.13 4.76 34.74 3.95
8715 10297 2.517450 CCAGCGCTCGATTCGAACC 61.517 63.158 7.13 3.54 34.74 3.62
8716 10298 1.805539 CAGCGCTCGATTCGAACCA 60.806 57.895 7.13 0.00 34.74 3.67
8717 10299 1.517257 AGCGCTCGATTCGAACCAG 60.517 57.895 2.64 0.00 34.74 4.00
8718 10300 2.998667 CGCTCGATTCGAACCAGC 59.001 61.111 10.38 7.37 34.74 4.85
8746 10339 1.461091 TAGCGGTGGGACGATGGATC 61.461 60.000 0.00 0.00 35.47 3.36
8776 10369 4.505217 GTGTTCGGCGCGCATCTG 62.505 66.667 34.42 18.95 0.00 2.90
8829 10422 3.666253 CCCGGGGTTTCGCAACAC 61.666 66.667 14.71 0.00 35.28 3.32
8830 10423 4.020378 CCGGGGTTTCGCAACACG 62.020 66.667 0.00 3.95 37.15 4.49
8831 10424 4.020378 CGGGGTTTCGCAACACGG 62.020 66.667 0.00 0.00 43.89 4.94
8832 10425 3.666253 GGGGTTTCGCAACACGGG 61.666 66.667 0.00 0.00 43.89 5.28
8833 10426 2.903350 GGGTTTCGCAACACGGGT 60.903 61.111 0.00 0.00 43.89 5.28
8834 10427 2.330041 GGTTTCGCAACACGGGTG 59.670 61.111 0.00 0.00 43.89 4.61
8835 10428 2.330041 GTTTCGCAACACGGGTGG 59.670 61.111 0.00 0.00 43.89 4.61
8836 10429 2.902846 TTTCGCAACACGGGTGGG 60.903 61.111 0.00 0.00 43.89 4.61
8837 10430 3.700831 TTTCGCAACACGGGTGGGT 62.701 57.895 0.00 0.00 43.89 4.51
8838 10431 4.920112 TCGCAACACGGGTGGGTG 62.920 66.667 0.00 0.00 43.89 4.61
8839 10432 4.920112 CGCAACACGGGTGGGTGA 62.920 66.667 0.00 0.00 40.38 4.02
8840 10433 2.517402 GCAACACGGGTGGGTGAA 60.517 61.111 0.00 0.00 40.38 3.18
8841 10434 2.551912 GCAACACGGGTGGGTGAAG 61.552 63.158 0.00 0.00 40.38 3.02
8842 10435 1.153046 CAACACGGGTGGGTGAAGT 60.153 57.895 0.00 0.00 40.38 3.01
8843 10436 1.153046 AACACGGGTGGGTGAAGTG 60.153 57.895 0.00 0.00 40.38 3.16
8844 10437 1.628238 AACACGGGTGGGTGAAGTGA 61.628 55.000 0.00 0.00 40.38 3.41
8845 10438 1.597027 CACGGGTGGGTGAAGTGAC 60.597 63.158 0.00 0.00 40.38 3.67
8846 10439 2.067605 ACGGGTGGGTGAAGTGACA 61.068 57.895 0.00 0.00 0.00 3.58
8847 10440 1.147376 CGGGTGGGTGAAGTGACAA 59.853 57.895 0.00 0.00 0.00 3.18
8848 10441 0.884704 CGGGTGGGTGAAGTGACAAG 60.885 60.000 0.00 0.00 0.00 3.16
8849 10442 0.182775 GGGTGGGTGAAGTGACAAGT 59.817 55.000 0.00 0.00 0.00 3.16
8850 10443 1.308998 GGTGGGTGAAGTGACAAGTG 58.691 55.000 0.00 0.00 0.00 3.16
8851 10444 1.134220 GGTGGGTGAAGTGACAAGTGA 60.134 52.381 0.00 0.00 0.00 3.41
8852 10445 2.213499 GTGGGTGAAGTGACAAGTGAG 58.787 52.381 0.00 0.00 0.00 3.51
8853 10446 1.140852 TGGGTGAAGTGACAAGTGAGG 59.859 52.381 0.00 0.00 0.00 3.86
8854 10447 1.416401 GGGTGAAGTGACAAGTGAGGA 59.584 52.381 0.00 0.00 0.00 3.71
8855 10448 2.548920 GGGTGAAGTGACAAGTGAGGAG 60.549 54.545 0.00 0.00 0.00 3.69
8856 10449 2.103263 GGTGAAGTGACAAGTGAGGAGT 59.897 50.000 0.00 0.00 0.00 3.85
8857 10450 3.126831 GTGAAGTGACAAGTGAGGAGTG 58.873 50.000 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.107114 GCTCGAGATCCTCTTGGACA 58.893 55.000 18.75 0.00 46.51 4.02
1 2 0.387565 GGCTCGAGATCCTCTTGGAC 59.612 60.000 18.75 0.00 46.51 4.02
2 3 4.918318 TTCGGCTCGAGATCCTCTTGGA 62.918 54.545 18.75 0.00 41.27 3.53
3 4 1.103987 TCGGCTCGAGATCCTCTTGG 61.104 60.000 18.75 0.00 0.00 3.61
4 5 0.741326 TTCGGCTCGAGATCCTCTTG 59.259 55.000 18.75 0.00 37.14 3.02
5 6 1.028905 CTTCGGCTCGAGATCCTCTT 58.971 55.000 18.75 0.00 37.14 2.85
6 7 0.181587 TCTTCGGCTCGAGATCCTCT 59.818 55.000 18.75 0.00 37.14 3.69
7 8 1.243902 ATCTTCGGCTCGAGATCCTC 58.756 55.000 18.75 0.00 37.14 3.71
8 9 2.570415 TATCTTCGGCTCGAGATCCT 57.430 50.000 18.75 0.00 37.14 3.24
9 10 3.859411 AATATCTTCGGCTCGAGATCC 57.141 47.619 18.75 7.91 37.14 3.36
10 11 6.254589 CCAAATAATATCTTCGGCTCGAGATC 59.745 42.308 18.75 6.37 37.14 2.75
11 12 6.102663 CCAAATAATATCTTCGGCTCGAGAT 58.897 40.000 18.75 1.84 37.14 2.75
12 13 5.470368 CCAAATAATATCTTCGGCTCGAGA 58.530 41.667 18.75 0.00 37.14 4.04
13 14 4.092091 GCCAAATAATATCTTCGGCTCGAG 59.908 45.833 8.45 8.45 37.14 4.04
14 15 3.994392 GCCAAATAATATCTTCGGCTCGA 59.006 43.478 0.00 0.00 35.17 4.04
15 16 3.997021 AGCCAAATAATATCTTCGGCTCG 59.003 43.478 0.00 0.00 44.98 5.03
16 17 4.378874 GCAGCCAAATAATATCTTCGGCTC 60.379 45.833 0.00 0.00 44.98 4.70
18 19 3.503748 AGCAGCCAAATAATATCTTCGGC 59.496 43.478 0.00 0.00 38.36 5.54
19 20 4.143030 CGAGCAGCCAAATAATATCTTCGG 60.143 45.833 0.00 0.00 0.00 4.30
20 21 4.667668 GCGAGCAGCCAAATAATATCTTCG 60.668 45.833 0.00 0.00 40.81 3.79
21 22 4.716943 GCGAGCAGCCAAATAATATCTTC 58.283 43.478 0.00 0.00 40.81 2.87
22 23 4.756084 GCGAGCAGCCAAATAATATCTT 57.244 40.909 0.00 0.00 40.81 2.40
36 37 0.179197 CACATTGAGCAAGCGAGCAG 60.179 55.000 6.21 0.00 36.85 4.24
37 38 0.603439 TCACATTGAGCAAGCGAGCA 60.603 50.000 6.21 0.00 36.85 4.26
38 39 0.731417 ATCACATTGAGCAAGCGAGC 59.269 50.000 0.00 0.00 0.00 5.03
39 40 2.782163 CAATCACATTGAGCAAGCGAG 58.218 47.619 0.00 0.00 42.83 5.03
40 41 1.135603 GCAATCACATTGAGCAAGCGA 60.136 47.619 0.25 0.00 42.83 4.93
41 42 1.135489 AGCAATCACATTGAGCAAGCG 60.135 47.619 0.25 0.00 42.83 4.68
42 43 2.259618 CAGCAATCACATTGAGCAAGC 58.740 47.619 0.25 0.00 42.83 4.01
43 44 3.570926 ACAGCAATCACATTGAGCAAG 57.429 42.857 0.25 0.00 42.83 4.01
44 45 4.052608 CAAACAGCAATCACATTGAGCAA 58.947 39.130 0.25 0.00 42.83 3.91
45 46 3.553302 CCAAACAGCAATCACATTGAGCA 60.553 43.478 0.25 0.00 42.83 4.26
46 47 2.991190 CCAAACAGCAATCACATTGAGC 59.009 45.455 0.25 0.00 42.83 4.26
47 48 2.991190 GCCAAACAGCAATCACATTGAG 59.009 45.455 0.25 0.00 42.83 3.02
48 49 2.629137 AGCCAAACAGCAATCACATTGA 59.371 40.909 0.25 0.00 42.83 2.57
49 50 2.734606 CAGCCAAACAGCAATCACATTG 59.265 45.455 0.00 0.00 43.06 2.82
50 51 2.289195 CCAGCCAAACAGCAATCACATT 60.289 45.455 0.00 0.00 34.23 2.71
51 52 1.274167 CCAGCCAAACAGCAATCACAT 59.726 47.619 0.00 0.00 34.23 3.21
52 53 0.675083 CCAGCCAAACAGCAATCACA 59.325 50.000 0.00 0.00 34.23 3.58
53 54 0.668401 GCCAGCCAAACAGCAATCAC 60.668 55.000 0.00 0.00 34.23 3.06
54 55 1.114119 TGCCAGCCAAACAGCAATCA 61.114 50.000 0.00 0.00 34.23 2.57
55 56 0.248289 ATGCCAGCCAAACAGCAATC 59.752 50.000 0.00 0.00 38.99 2.67
56 57 0.036765 CATGCCAGCCAAACAGCAAT 60.037 50.000 0.00 0.00 38.99 3.56
57 58 1.368209 CATGCCAGCCAAACAGCAA 59.632 52.632 0.00 0.00 38.99 3.91
58 59 1.808531 GACATGCCAGCCAAACAGCA 61.809 55.000 0.00 0.00 40.00 4.41
59 60 1.080298 GACATGCCAGCCAAACAGC 60.080 57.895 0.00 0.00 0.00 4.40
60 61 0.892755 ATGACATGCCAGCCAAACAG 59.107 50.000 0.00 0.00 0.00 3.16
61 62 0.604073 CATGACATGCCAGCCAAACA 59.396 50.000 1.71 0.00 0.00 2.83
62 63 0.604578 ACATGACATGCCAGCCAAAC 59.395 50.000 15.49 0.00 0.00 2.93
63 64 0.604073 CACATGACATGCCAGCCAAA 59.396 50.000 15.49 0.00 0.00 3.28
64 65 0.251253 TCACATGACATGCCAGCCAA 60.251 50.000 15.49 0.00 0.00 4.52
65 66 0.033894 ATCACATGACATGCCAGCCA 60.034 50.000 15.49 0.00 0.00 4.75
66 67 0.666913 GATCACATGACATGCCAGCC 59.333 55.000 15.49 0.00 0.00 4.85
67 68 1.676746 AGATCACATGACATGCCAGC 58.323 50.000 15.49 4.95 0.00 4.85
68 69 4.193865 TGTAAGATCACATGACATGCCAG 58.806 43.478 15.49 6.11 0.00 4.85
69 70 4.219264 TGTAAGATCACATGACATGCCA 57.781 40.909 15.49 2.36 0.00 4.92
70 71 5.762825 AATGTAAGATCACATGACATGCC 57.237 39.130 15.49 2.89 39.10 4.40
71 72 5.975344 CCAAATGTAAGATCACATGACATGC 59.025 40.000 15.49 0.00 39.10 4.06
72 73 6.460537 CCCCAAATGTAAGATCACATGACATG 60.461 42.308 14.02 14.02 39.10 3.21
73 74 5.595542 CCCCAAATGTAAGATCACATGACAT 59.404 40.000 0.00 0.00 39.10 3.06
74 75 4.949238 CCCCAAATGTAAGATCACATGACA 59.051 41.667 0.00 0.00 39.10 3.58
75 76 4.202050 GCCCCAAATGTAAGATCACATGAC 60.202 45.833 0.00 0.00 39.10 3.06
76 77 3.953612 GCCCCAAATGTAAGATCACATGA 59.046 43.478 0.00 0.00 39.10 3.07
77 78 3.243168 CGCCCCAAATGTAAGATCACATG 60.243 47.826 0.00 0.00 39.10 3.21
78 79 2.951642 CGCCCCAAATGTAAGATCACAT 59.048 45.455 0.00 0.00 40.90 3.21
79 80 2.364632 CGCCCCAAATGTAAGATCACA 58.635 47.619 0.00 0.00 0.00 3.58
80 81 1.676006 CCGCCCCAAATGTAAGATCAC 59.324 52.381 0.00 0.00 0.00 3.06
81 82 1.562008 TCCGCCCCAAATGTAAGATCA 59.438 47.619 0.00 0.00 0.00 2.92
82 83 2.222027 CTCCGCCCCAAATGTAAGATC 58.778 52.381 0.00 0.00 0.00 2.75
83 84 1.133792 CCTCCGCCCCAAATGTAAGAT 60.134 52.381 0.00 0.00 0.00 2.40
84 85 0.254747 CCTCCGCCCCAAATGTAAGA 59.745 55.000 0.00 0.00 0.00 2.10
85 86 0.751643 CCCTCCGCCCCAAATGTAAG 60.752 60.000 0.00 0.00 0.00 2.34
86 87 1.208844 TCCCTCCGCCCCAAATGTAA 61.209 55.000 0.00 0.00 0.00 2.41
87 88 1.616930 TCCCTCCGCCCCAAATGTA 60.617 57.895 0.00 0.00 0.00 2.29
88 89 2.938798 TCCCTCCGCCCCAAATGT 60.939 61.111 0.00 0.00 0.00 2.71
89 90 1.632018 TACTCCCTCCGCCCCAAATG 61.632 60.000 0.00 0.00 0.00 2.32
90 91 1.307517 TACTCCCTCCGCCCCAAAT 60.308 57.895 0.00 0.00 0.00 2.32
91 92 2.123180 TACTCCCTCCGCCCCAAA 59.877 61.111 0.00 0.00 0.00 3.28
92 93 2.686106 GTACTCCCTCCGCCCCAA 60.686 66.667 0.00 0.00 0.00 4.12
93 94 3.680196 AGTACTCCCTCCGCCCCA 61.680 66.667 0.00 0.00 0.00 4.96
94 95 3.155167 CAGTACTCCCTCCGCCCC 61.155 72.222 0.00 0.00 0.00 5.80
95 96 1.551019 AAACAGTACTCCCTCCGCCC 61.551 60.000 0.00 0.00 0.00 6.13
96 97 0.323957 AAAACAGTACTCCCTCCGCC 59.676 55.000 0.00 0.00 0.00 6.13
97 98 1.270678 ACAAAACAGTACTCCCTCCGC 60.271 52.381 0.00 0.00 0.00 5.54
98 99 2.413837 CACAAAACAGTACTCCCTCCG 58.586 52.381 0.00 0.00 0.00 4.63
99 100 2.152016 GCACAAAACAGTACTCCCTCC 58.848 52.381 0.00 0.00 0.00 4.30
100 101 2.152016 GGCACAAAACAGTACTCCCTC 58.848 52.381 0.00 0.00 0.00 4.30
101 102 1.774856 AGGCACAAAACAGTACTCCCT 59.225 47.619 0.00 0.00 0.00 4.20
102 103 2.271944 AGGCACAAAACAGTACTCCC 57.728 50.000 0.00 0.00 0.00 4.30
103 104 5.959618 ATAAAGGCACAAAACAGTACTCC 57.040 39.130 0.00 0.00 0.00 3.85
108 109 9.243105 ACAGAATATATAAAGGCACAAAACAGT 57.757 29.630 0.00 0.00 0.00 3.55
133 134 9.310716 GCGGAGTAGAATATTATGGGTTTATAC 57.689 37.037 0.00 0.00 0.00 1.47
134 135 9.038072 TGCGGAGTAGAATATTATGGGTTTATA 57.962 33.333 0.00 0.00 0.00 0.98
135 136 7.913789 TGCGGAGTAGAATATTATGGGTTTAT 58.086 34.615 0.00 0.00 0.00 1.40
136 137 7.305813 TGCGGAGTAGAATATTATGGGTTTA 57.694 36.000 0.00 0.00 0.00 2.01
137 138 6.182507 TGCGGAGTAGAATATTATGGGTTT 57.817 37.500 0.00 0.00 0.00 3.27
138 139 5.818678 TGCGGAGTAGAATATTATGGGTT 57.181 39.130 0.00 0.00 0.00 4.11
139 140 6.374417 AATGCGGAGTAGAATATTATGGGT 57.626 37.500 0.00 0.00 0.00 4.51
140 141 6.878923 TCAAATGCGGAGTAGAATATTATGGG 59.121 38.462 0.00 0.00 0.00 4.00
141 142 7.905604 TCAAATGCGGAGTAGAATATTATGG 57.094 36.000 0.00 0.00 0.00 2.74
144 145 9.653287 CCTAATCAAATGCGGAGTAGAATATTA 57.347 33.333 0.00 0.00 35.55 0.98
145 146 8.375506 TCCTAATCAAATGCGGAGTAGAATATT 58.624 33.333 0.00 0.00 35.55 1.28
146 147 7.907389 TCCTAATCAAATGCGGAGTAGAATAT 58.093 34.615 0.00 0.00 35.55 1.28
147 148 7.297936 TCCTAATCAAATGCGGAGTAGAATA 57.702 36.000 0.00 0.00 35.55 1.75
148 149 6.174720 TCCTAATCAAATGCGGAGTAGAAT 57.825 37.500 0.00 0.00 35.55 2.40
149 150 5.607939 TCCTAATCAAATGCGGAGTAGAA 57.392 39.130 0.00 0.00 35.55 2.10
150 151 5.808366 ATCCTAATCAAATGCGGAGTAGA 57.192 39.130 0.00 0.00 35.55 2.59
151 152 6.867662 AAATCCTAATCAAATGCGGAGTAG 57.132 37.500 0.00 0.00 33.86 2.57
152 153 6.826231 TGAAAATCCTAATCAAATGCGGAGTA 59.174 34.615 0.00 0.00 0.00 2.59
153 154 5.652014 TGAAAATCCTAATCAAATGCGGAGT 59.348 36.000 0.00 0.00 0.00 3.85
154 155 5.973565 GTGAAAATCCTAATCAAATGCGGAG 59.026 40.000 0.00 0.00 0.00 4.63
155 156 5.417266 TGTGAAAATCCTAATCAAATGCGGA 59.583 36.000 0.00 0.00 0.00 5.54
156 157 5.649557 TGTGAAAATCCTAATCAAATGCGG 58.350 37.500 0.00 0.00 0.00 5.69
157 158 6.585702 TGTTGTGAAAATCCTAATCAAATGCG 59.414 34.615 0.00 0.00 0.00 4.73
158 159 7.887996 TGTTGTGAAAATCCTAATCAAATGC 57.112 32.000 0.00 0.00 0.00 3.56
164 165 9.573133 CCTTGTATTGTTGTGAAAATCCTAATC 57.427 33.333 0.00 0.00 0.00 1.75
165 166 8.531146 CCCTTGTATTGTTGTGAAAATCCTAAT 58.469 33.333 0.00 0.00 0.00 1.73
166 167 7.039363 CCCCTTGTATTGTTGTGAAAATCCTAA 60.039 37.037 0.00 0.00 0.00 2.69
167 168 6.435904 CCCCTTGTATTGTTGTGAAAATCCTA 59.564 38.462 0.00 0.00 0.00 2.94
168 169 5.245977 CCCCTTGTATTGTTGTGAAAATCCT 59.754 40.000 0.00 0.00 0.00 3.24
169 170 5.478407 CCCCTTGTATTGTTGTGAAAATCC 58.522 41.667 0.00 0.00 0.00 3.01
170 171 5.478407 CCCCCTTGTATTGTTGTGAAAATC 58.522 41.667 0.00 0.00 0.00 2.17
171 172 4.262851 GCCCCCTTGTATTGTTGTGAAAAT 60.263 41.667 0.00 0.00 0.00 1.82
172 173 3.070302 GCCCCCTTGTATTGTTGTGAAAA 59.930 43.478 0.00 0.00 0.00 2.29
173 174 2.630580 GCCCCCTTGTATTGTTGTGAAA 59.369 45.455 0.00 0.00 0.00 2.69
174 175 2.158385 AGCCCCCTTGTATTGTTGTGAA 60.158 45.455 0.00 0.00 0.00 3.18
175 176 1.427368 AGCCCCCTTGTATTGTTGTGA 59.573 47.619 0.00 0.00 0.00 3.58
176 177 1.545582 CAGCCCCCTTGTATTGTTGTG 59.454 52.381 0.00 0.00 0.00 3.33
177 178 1.549950 CCAGCCCCCTTGTATTGTTGT 60.550 52.381 0.00 0.00 0.00 3.32
178 179 1.185315 CCAGCCCCCTTGTATTGTTG 58.815 55.000 0.00 0.00 0.00 3.33
179 180 0.041090 CCCAGCCCCCTTGTATTGTT 59.959 55.000 0.00 0.00 0.00 2.83
180 181 0.849094 TCCCAGCCCCCTTGTATTGT 60.849 55.000 0.00 0.00 0.00 2.71
181 182 0.557729 ATCCCAGCCCCCTTGTATTG 59.442 55.000 0.00 0.00 0.00 1.90
182 183 0.853530 GATCCCAGCCCCCTTGTATT 59.146 55.000 0.00 0.00 0.00 1.89
183 184 1.068352 GGATCCCAGCCCCCTTGTAT 61.068 60.000 0.00 0.00 0.00 2.29
184 185 1.696314 GGATCCCAGCCCCCTTGTA 60.696 63.158 0.00 0.00 0.00 2.41
185 186 3.023735 GGATCCCAGCCCCCTTGT 61.024 66.667 0.00 0.00 0.00 3.16
186 187 0.993509 TAAGGATCCCAGCCCCCTTG 60.994 60.000 8.55 0.00 39.20 3.61
187 188 0.699231 CTAAGGATCCCAGCCCCCTT 60.699 60.000 8.55 0.00 41.47 3.95
188 189 1.073397 CTAAGGATCCCAGCCCCCT 60.073 63.158 8.55 0.00 0.00 4.79
189 190 0.104620 TACTAAGGATCCCAGCCCCC 60.105 60.000 8.55 0.00 0.00 5.40
190 191 1.353091 CTACTAAGGATCCCAGCCCC 58.647 60.000 8.55 0.00 0.00 5.80
191 192 2.104669 ACTACTAAGGATCCCAGCCC 57.895 55.000 8.55 0.00 0.00 5.19
192 193 3.515901 CCATACTACTAAGGATCCCAGCC 59.484 52.174 8.55 0.00 0.00 4.85
193 194 4.161102 ACCATACTACTAAGGATCCCAGC 58.839 47.826 8.55 0.00 0.00 4.85
194 195 6.749036 AAACCATACTACTAAGGATCCCAG 57.251 41.667 8.55 8.84 0.00 4.45
195 196 6.183360 CGAAAACCATACTACTAAGGATCCCA 60.183 42.308 8.55 0.00 0.00 4.37
196 197 6.183360 ACGAAAACCATACTACTAAGGATCCC 60.183 42.308 8.55 0.00 0.00 3.85
197 198 6.814043 ACGAAAACCATACTACTAAGGATCC 58.186 40.000 2.48 2.48 0.00 3.36
198 199 7.589221 CGTACGAAAACCATACTACTAAGGATC 59.411 40.741 10.44 0.00 0.00 3.36
199 200 7.283127 TCGTACGAAAACCATACTACTAAGGAT 59.717 37.037 17.11 0.00 0.00 3.24
200 201 6.597672 TCGTACGAAAACCATACTACTAAGGA 59.402 38.462 17.11 0.00 0.00 3.36
201 202 6.785191 TCGTACGAAAACCATACTACTAAGG 58.215 40.000 17.11 0.00 0.00 2.69
202 203 8.847444 AATCGTACGAAAACCATACTACTAAG 57.153 34.615 23.56 0.00 0.00 2.18
203 204 9.638239 AAAATCGTACGAAAACCATACTACTAA 57.362 29.630 23.56 0.00 0.00 2.24
205 206 9.807649 ATAAAATCGTACGAAAACCATACTACT 57.192 29.630 23.56 0.00 0.00 2.57
210 211 9.063739 GCAAAATAAAATCGTACGAAAACCATA 57.936 29.630 23.56 10.04 0.00 2.74
211 212 7.595502 TGCAAAATAAAATCGTACGAAAACCAT 59.404 29.630 23.56 9.24 0.00 3.55
212 213 6.916387 TGCAAAATAAAATCGTACGAAAACCA 59.084 30.769 23.56 7.21 0.00 3.67
213 214 7.323046 TGCAAAATAAAATCGTACGAAAACC 57.677 32.000 23.56 3.49 0.00 3.27
214 215 9.233960 CATTGCAAAATAAAATCGTACGAAAAC 57.766 29.630 23.56 3.76 0.00 2.43
215 216 7.947299 GCATTGCAAAATAAAATCGTACGAAAA 59.053 29.630 23.56 8.30 0.00 2.29
216 217 7.114953 TGCATTGCAAAATAAAATCGTACGAAA 59.885 29.630 23.56 7.55 34.76 3.46
217 218 6.582672 TGCATTGCAAAATAAAATCGTACGAA 59.417 30.769 23.56 5.87 34.76 3.85
218 219 6.086871 TGCATTGCAAAATAAAATCGTACGA 58.913 32.000 21.93 21.93 34.76 3.43
219 220 6.311332 TGCATTGCAAAATAAAATCGTACG 57.689 33.333 9.33 9.53 34.76 3.67
220 221 9.198065 GAAATGCATTGCAAAATAAAATCGTAC 57.802 29.630 16.46 0.00 43.62 3.67
221 222 8.929746 TGAAATGCATTGCAAAATAAAATCGTA 58.070 25.926 18.17 0.00 43.62 3.43
222 223 7.804712 TGAAATGCATTGCAAAATAAAATCGT 58.195 26.923 18.17 0.00 43.62 3.73
223 224 8.829514 ATGAAATGCATTGCAAAATAAAATCG 57.170 26.923 23.87 0.00 43.62 3.34
259 260 6.828273 TCCTTTCAAGAGTTTTGAGTGAATGA 59.172 34.615 0.00 0.00 0.00 2.57
291 292 5.697633 TCTTAGTTGTGTCGTTGGATAAACC 59.302 40.000 0.00 0.00 35.13 3.27
299 300 6.525121 TTGATTCTCTTAGTTGTGTCGTTG 57.475 37.500 0.00 0.00 0.00 4.10
300 301 7.548196 TTTTGATTCTCTTAGTTGTGTCGTT 57.452 32.000 0.00 0.00 0.00 3.85
303 304 8.329203 AGGATTTTGATTCTCTTAGTTGTGTC 57.671 34.615 0.00 0.00 0.00 3.67
390 391 9.686683 AGTAGAAGTAATAATTTCAGCAATGGT 57.313 29.630 0.00 0.00 0.00 3.55
438 471 1.895707 GGATCAATGCTCGCTGGGG 60.896 63.158 0.00 0.00 0.00 4.96
442 475 2.590007 GGCGGATCAATGCTCGCT 60.590 61.111 10.78 0.00 46.31 4.93
460 513 2.829914 CCATGACATGTGGGGCCG 60.830 66.667 14.26 0.00 32.98 6.13
505 558 2.049985 ACTCGAGTCGCACAGTGC 60.050 61.111 13.58 16.21 40.69 4.40
536 590 3.691575 TCTCTGTCTGGTTGGTCTAGAG 58.308 50.000 0.00 0.00 34.40 2.43
537 591 3.330998 TCTCTCTGTCTGGTTGGTCTAGA 59.669 47.826 0.00 0.00 0.00 2.43
617 672 1.229529 GGGGGTGGTGGAGAGAGAA 60.230 63.158 0.00 0.00 0.00 2.87
636 691 0.031178 CTTGTGGAGTTGTGGCTTGC 59.969 55.000 0.00 0.00 0.00 4.01
643 699 1.143073 GGAGGTTCCTTGTGGAGTTGT 59.857 52.381 0.00 0.00 44.24 3.32
796 1197 4.416738 GGGCTCCGCTTTGGCTCT 62.417 66.667 0.00 0.00 37.80 4.09
940 1375 0.746923 GTGGCATTTACGGGGGAGAC 60.747 60.000 0.00 0.00 0.00 3.36
1036 1471 0.551131 AGGAGGAAGGCAATGAGGGT 60.551 55.000 0.00 0.00 0.00 4.34
1038 1473 0.179062 CGAGGAGGAAGGCAATGAGG 60.179 60.000 0.00 0.00 0.00 3.86
1085 1529 3.116531 GCGGACGGGAAAGGAACG 61.117 66.667 0.00 0.00 0.00 3.95
1209 1664 1.754234 CCGGATGCCTCCCAAAAGG 60.754 63.158 0.00 0.00 38.45 3.11
1329 1793 1.066645 GGCAGCATCAAAAAGGGAAGG 60.067 52.381 0.00 0.00 0.00 3.46
1453 1925 1.901591 CAGAGGAAAAGGCAGCTTCA 58.098 50.000 0.00 0.00 0.00 3.02
1454 1926 0.525311 GCAGAGGAAAAGGCAGCTTC 59.475 55.000 0.00 0.00 0.00 3.86
1477 1949 4.978580 GCAGAGTCCATTTTGAAACAGAAC 59.021 41.667 0.00 0.00 0.00 3.01
1491 1963 1.131638 ACAGAACAAGGCAGAGTCCA 58.868 50.000 0.00 0.00 0.00 4.02
1495 1967 4.637483 TTTGAAACAGAACAAGGCAGAG 57.363 40.909 0.00 0.00 0.00 3.35
1496 1968 4.381505 GGTTTTGAAACAGAACAAGGCAGA 60.382 41.667 8.68 0.00 40.63 4.26
1497 1969 3.865164 GGTTTTGAAACAGAACAAGGCAG 59.135 43.478 8.68 0.00 40.63 4.85
1498 1970 3.674682 CGGTTTTGAAACAGAACAAGGCA 60.675 43.478 8.68 0.00 40.63 4.75
1499 1971 2.857748 CGGTTTTGAAACAGAACAAGGC 59.142 45.455 8.68 0.00 40.63 4.35
1500 1972 3.119280 ACCGGTTTTGAAACAGAACAAGG 60.119 43.478 0.00 12.96 40.63 3.61
1501 1973 3.857093 CACCGGTTTTGAAACAGAACAAG 59.143 43.478 2.97 0.00 40.63 3.16
1502 1974 3.367498 CCACCGGTTTTGAAACAGAACAA 60.367 43.478 2.97 0.00 40.63 2.83
1503 1975 2.164624 CCACCGGTTTTGAAACAGAACA 59.835 45.455 2.97 0.00 40.63 3.18
1504 1976 2.164827 ACCACCGGTTTTGAAACAGAAC 59.835 45.455 2.97 0.00 40.63 3.01
1505 1977 2.448453 ACCACCGGTTTTGAAACAGAA 58.552 42.857 2.97 0.00 40.63 3.02
1506 1978 2.131776 ACCACCGGTTTTGAAACAGA 57.868 45.000 2.97 0.00 40.63 3.41
1507 1979 2.951457 AACCACCGGTTTTGAAACAG 57.049 45.000 2.97 4.62 44.33 3.16
1517 1989 0.256464 TCAAACTCCAAACCACCGGT 59.744 50.000 0.00 0.00 37.65 5.28
1518 1990 1.066454 GTTCAAACTCCAAACCACCGG 59.934 52.381 0.00 0.00 0.00 5.28
1519 1991 2.021457 AGTTCAAACTCCAAACCACCG 58.979 47.619 0.00 0.00 32.86 4.94
1539 2011 0.605083 AGAGTGCAAGATCAGCGTGA 59.395 50.000 0.00 0.00 33.85 4.35
1567 2039 4.142447 GCCAGTACATCTGAACGACTCTTA 60.142 45.833 0.00 0.00 46.27 2.10
1588 2062 1.518903 AAGGAAAGCAAGCTCGTGCC 61.519 55.000 6.77 0.00 46.14 5.01
1685 2164 2.816087 GCGACGGGTACTAGGATTATCA 59.184 50.000 0.00 0.00 0.00 2.15
1686 2165 3.080319 AGCGACGGGTACTAGGATTATC 58.920 50.000 0.00 0.00 0.00 1.75
1702 2181 0.651031 GCGGTGAGGAATAAAGCGAC 59.349 55.000 0.00 0.00 36.98 5.19
1734 2213 2.143876 ACATCGGATTTGGAAAGGGG 57.856 50.000 0.00 0.00 0.00 4.79
1770 2257 3.250040 GTCTTCACGGCAAGAAAAGCTTA 59.750 43.478 0.00 0.00 34.11 3.09
1854 2342 2.006888 ACAAGATCGCCGTATTTGGTG 58.993 47.619 0.00 0.00 40.98 4.17
1866 2354 0.878416 TGCCCCGAAAAACAAGATCG 59.122 50.000 0.00 0.00 36.39 3.69
1912 2400 0.597568 TGGGCGCAAAAACAGATGAG 59.402 50.000 10.83 0.00 0.00 2.90
1914 2402 2.083167 AATGGGCGCAAAAACAGATG 57.917 45.000 10.83 0.00 0.00 2.90
1952 2440 8.335356 CGAGATAGTGTAAAACCATTAACCATG 58.665 37.037 0.00 0.00 0.00 3.66
1972 2460 1.179174 CGCCCCTGGATGACGAGATA 61.179 60.000 0.00 0.00 0.00 1.98
2218 2707 1.818959 GCTGCAAGGCATTGGACCAA 61.819 55.000 13.70 9.92 38.13 3.67
2219 2708 2.277591 GCTGCAAGGCATTGGACCA 61.278 57.895 13.70 1.46 38.13 4.02
2220 2709 1.818959 TTGCTGCAAGGCATTGGACC 61.819 55.000 13.70 1.73 42.09 4.46
2221 2710 0.668401 GTTGCTGCAAGGCATTGGAC 60.668 55.000 16.53 5.81 42.09 4.02
2250 2739 0.323629 ATTTCGCCCTCGAGGTTGAA 59.676 50.000 29.25 26.32 46.34 2.69
2400 2893 3.191581 CGACTTCAGATCACTACAGGTGT 59.808 47.826 0.00 0.00 45.50 4.16
2402 2895 3.687125 TCGACTTCAGATCACTACAGGT 58.313 45.455 0.00 0.00 0.00 4.00
2403 2896 4.703645 TTCGACTTCAGATCACTACAGG 57.296 45.455 0.00 0.00 0.00 4.00
2404 2897 5.039984 CCATTCGACTTCAGATCACTACAG 58.960 45.833 0.00 0.00 0.00 2.74
2405 2898 4.142160 CCCATTCGACTTCAGATCACTACA 60.142 45.833 0.00 0.00 0.00 2.74
2406 2899 4.363999 CCCATTCGACTTCAGATCACTAC 58.636 47.826 0.00 0.00 0.00 2.73
2407 2900 3.181475 GCCCATTCGACTTCAGATCACTA 60.181 47.826 0.00 0.00 0.00 2.74
2506 2999 5.615289 TCCCAAACCCAAACATTAAACATG 58.385 37.500 0.00 0.00 0.00 3.21
2829 3322 4.766891 AGAACCACAACATATGAACCAAGG 59.233 41.667 10.38 5.99 0.00 3.61
2849 3342 7.619050 AGAGATTCTGAAAATACTCAGCAGAA 58.381 34.615 0.00 0.00 46.00 3.02
2995 3496 5.817296 TGCAGTATTAGCACTAGAACCATTG 59.183 40.000 0.00 0.00 37.02 2.82
2997 3498 5.129485 ACTGCAGTATTAGCACTAGAACCAT 59.871 40.000 20.16 0.00 37.02 3.55
3059 3678 6.485830 TCCCCTAAGTATGATCAACTTGAG 57.514 41.667 22.68 16.50 37.71 3.02
3062 3681 6.064717 GCAATCCCCTAAGTATGATCAACTT 58.935 40.000 19.93 19.93 40.25 2.66
3169 3788 2.981805 CAACGCAATGTGGTTCAAGATG 59.018 45.455 0.00 0.00 0.00 2.90
3214 3833 2.666190 TGGTCAAGCGAGTGCAGC 60.666 61.111 0.00 0.00 46.23 5.25
3233 3852 5.345202 AGTCAAGCTATTGTTCTTAACGTCG 59.655 40.000 0.00 0.00 37.68 5.12
3239 3858 4.534500 TCCCCAGTCAAGCTATTGTTCTTA 59.466 41.667 0.00 0.00 37.68 2.10
3252 3871 0.337082 TCCGGTATCTCCCCAGTCAA 59.663 55.000 0.00 0.00 0.00 3.18
3269 3888 2.677037 CGTACAGTTCCCAATGGTCTCC 60.677 54.545 0.00 0.00 0.00 3.71
3272 3891 2.028385 ACTCGTACAGTTCCCAATGGTC 60.028 50.000 0.00 0.00 26.56 4.02
3322 3941 4.448537 TTGACATAATTTCAAAGGGGCG 57.551 40.909 0.00 0.00 29.89 6.13
3485 4105 4.208047 GCTAACTCTGTGAAGCATACGATG 59.792 45.833 0.00 0.00 35.05 3.84
3495 4115 5.171476 GCAGATTAGTGCTAACTCTGTGAA 58.829 41.667 19.79 0.00 40.54 3.18
3497 4117 4.498241 TGCAGATTAGTGCTAACTCTGTG 58.502 43.478 19.79 7.78 44.32 3.66
3524 4144 6.899631 AGGACCTGATACAGATGATATGCATA 59.100 38.462 9.27 9.27 37.34 3.14
3525 4145 5.725338 AGGACCTGATACAGATGATATGCAT 59.275 40.000 3.79 3.79 40.77 3.96
3614 4236 2.093764 AGCTCATCACAGGACTTACAGC 60.094 50.000 0.00 0.00 0.00 4.40
3627 4249 1.928868 TCAGGACACAGAGCTCATCA 58.071 50.000 17.77 0.00 0.00 3.07
3638 4260 5.067805 ACCAACAAGAAAGAATTCAGGACAC 59.932 40.000 8.44 0.00 38.06 3.67
3642 4264 4.202141 TGCACCAACAAGAAAGAATTCAGG 60.202 41.667 8.44 0.00 38.06 3.86
3645 4267 9.807649 ATATATTGCACCAACAAGAAAGAATTC 57.192 29.630 0.00 0.00 35.70 2.17
3646 4268 9.590451 CATATATTGCACCAACAAGAAAGAATT 57.410 29.630 0.00 0.00 31.96 2.17
3672 4454 9.220767 GGAATGGTTAGAGGTCATATCAATTAC 57.779 37.037 0.00 0.00 0.00 1.89
3688 4470 3.713764 ACTCAGATCCCTGGAATGGTTAG 59.286 47.826 0.00 0.00 40.76 2.34
3701 4483 6.758886 CAGATAGTTGGTTGTAACTCAGATCC 59.241 42.308 0.00 0.00 41.01 3.36
3756 4538 8.198109 GGAAGCTTACAGTTTCTCAGTATATGA 58.802 37.037 2.98 0.00 35.99 2.15
3785 4567 4.479786 ACTTTCATAGAGGAAGCAGACC 57.520 45.455 0.00 0.00 0.00 3.85
3839 4621 7.342769 TGTATCTACAAGTCCACGATACATT 57.657 36.000 0.00 0.00 40.59 2.71
3842 4624 5.629849 GCATGTATCTACAAGTCCACGATAC 59.370 44.000 0.00 0.00 39.99 2.24
3851 4633 4.220693 TGCCTTGCATGTATCTACAAGT 57.779 40.909 0.00 0.00 39.99 3.16
3919 4701 2.371841 TGCCACTCACAGGTAATGAAGT 59.628 45.455 0.00 0.00 0.00 3.01
4140 4922 3.559238 AAGCTGCTTGTTTGATTACCG 57.441 42.857 15.16 0.00 0.00 4.02
4171 4953 1.149148 GGTTCCTGAGAAACACGAGC 58.851 55.000 0.00 0.00 39.68 5.03
4310 5096 4.578928 ACTGTAAAGGAGAAACAACGCATT 59.421 37.500 0.00 0.00 0.00 3.56
4457 5243 7.709613 GGTACAACTCGGTCAACTTTATCATAT 59.290 37.037 0.00 0.00 0.00 1.78
4476 5262 8.880878 AACAATTTAAATCACAAGGGTACAAC 57.119 30.769 0.10 0.00 0.00 3.32
4538 5325 3.023119 ACAGGTCAACAATGAACAAGCA 58.977 40.909 0.00 0.00 46.21 3.91
4550 5337 4.976224 AAACAGGTTAACACAGGTCAAC 57.024 40.909 8.10 0.00 0.00 3.18
4964 5754 3.125829 CGTTCAAGGAACTGATCACCATG 59.874 47.826 7.43 2.26 40.86 3.66
5104 5940 4.330250 ACTACACGCTGAACCTTCTACTA 58.670 43.478 0.00 0.00 0.00 1.82
5119 5955 5.863935 TCAATGATCAACTGAAGACTACACG 59.136 40.000 0.00 0.00 0.00 4.49
5120 5956 7.840342 ATCAATGATCAACTGAAGACTACAC 57.160 36.000 13.20 0.00 0.00 2.90
5132 5968 7.982224 TGAAGACAGATGAATCAATGATCAAC 58.018 34.615 0.00 0.00 0.00 3.18
5195 6031 1.186200 TCAGTGAAGAGACATCCCCG 58.814 55.000 0.00 0.00 0.00 5.73
5261 6097 1.805943 GCCAAACATTCAAACATGCCC 59.194 47.619 0.00 0.00 0.00 5.36
5354 6190 1.567504 ACCGTGAGAAGTTGTTGTCG 58.432 50.000 0.00 0.00 0.00 4.35
5438 6274 7.510343 AGGGCCGGATAGTTAAACTACTATTTA 59.490 37.037 5.05 0.00 40.51 1.40
5454 6290 1.696097 GCTGAAGGAAGGGCCGGATA 61.696 60.000 5.05 0.00 43.43 2.59
5618 6454 3.382546 GTGCTGCATAGAAAATCCATGGT 59.617 43.478 12.58 0.00 0.00 3.55
5621 6457 5.664294 TTTGTGCTGCATAGAAAATCCAT 57.336 34.783 5.27 0.00 0.00 3.41
5748 6584 5.499004 TTACCTGGTTTGCTAACAGAGAT 57.501 39.130 3.84 0.00 35.92 2.75
5812 6648 7.275560 GCAACATAAACCTTGCCAATAAGTAAG 59.724 37.037 0.00 0.00 37.41 2.34
5828 6669 0.515564 ACTCGCACGGCAACATAAAC 59.484 50.000 0.00 0.00 0.00 2.01
5852 6693 7.165460 TGGTGAGAAACATTAACGATCTAGA 57.835 36.000 0.00 0.00 0.00 2.43
5854 6695 7.876068 AGTTTGGTGAGAAACATTAACGATCTA 59.124 33.333 0.00 0.00 38.14 1.98
5902 6743 1.137872 GGTCTATGAGTGGGCAGTCAG 59.862 57.143 0.00 0.00 43.29 3.51
6260 7101 3.008485 AGAGAAGATTCCCAACAGGTGAC 59.992 47.826 0.00 0.00 36.75 3.67
6336 7177 2.031258 TTGGAACGAGTTTGCAGTGA 57.969 45.000 0.00 0.00 36.80 3.41
6361 7202 8.918202 TTGATCACTTGTACTAAACCATTCTT 57.082 30.769 0.00 0.00 0.00 2.52
6420 7261 8.956426 TCTTTGTGACAAATGAAGAAACTAAGT 58.044 29.630 11.58 0.00 0.00 2.24
6424 7265 7.756722 CACTTCTTTGTGACAAATGAAGAAACT 59.243 33.333 32.29 19.79 40.87 2.66
6429 7270 7.541783 TGTTTCACTTCTTTGTGACAAATGAAG 59.458 33.333 28.32 28.32 45.32 3.02
6435 7276 5.009110 TGTGTGTTTCACTTCTTTGTGACAA 59.991 36.000 0.00 0.00 45.32 3.18
6454 7295 1.271325 TGATAGTGGCCAGGTTGTGTG 60.271 52.381 5.11 0.00 0.00 3.82
6471 7312 7.660112 TGTGTCAAAGCATCAACTATTTTGAT 58.340 30.769 1.88 0.00 39.21 2.57
6524 7365 7.759489 ATGGCAATAGTTCTTCAACTGTTAA 57.241 32.000 0.00 0.00 40.83 2.01
6601 7445 0.250513 GGCGAGTCTCCCAATCAAGT 59.749 55.000 0.00 0.00 0.00 3.16
6604 7448 0.537188 GAAGGCGAGTCTCCCAATCA 59.463 55.000 9.30 0.00 0.00 2.57
6971 7815 4.523173 ACTCATCAACCTGAAGAACTACGA 59.477 41.667 0.00 0.00 0.00 3.43
6992 7840 6.319911 GGCTAAATAGGCTGAAGAAAATGACT 59.680 38.462 6.75 0.00 44.61 3.41
7098 7946 7.681782 GCAGATAGATCTACTCACATGATAGGC 60.682 44.444 4.10 0.00 34.85 3.93
7287 8135 3.507786 AGCAAACCGAAAAGTTGACAAC 58.492 40.909 10.47 10.47 0.00 3.32
7301 8149 1.194121 AAATGGCAGGGGAGCAAACC 61.194 55.000 0.00 0.00 35.83 3.27
7359 8207 6.763135 GTGAAACTTATCCTGATATGCTGTCA 59.237 38.462 1.22 0.89 0.00 3.58
7365 8213 6.595682 ACAGGGTGAAACTTATCCTGATATG 58.404 40.000 11.01 0.03 45.66 1.78
7385 8233 6.212235 CAGCACTGTATCTGATAACTACAGG 58.788 44.000 17.85 10.59 44.20 4.00
7389 8237 5.836347 CAGCAGCACTGTATCTGATAACTA 58.164 41.667 11.82 0.00 41.86 2.24
7406 8256 0.035056 TTCCCTTCCTAAGCAGCAGC 60.035 55.000 0.00 0.00 42.56 5.25
7410 8260 2.192263 AGGACTTCCCTTCCTAAGCAG 58.808 52.381 0.00 0.00 44.85 4.24
7423 8273 6.248569 TCATCCCATAGGTAAAAGGACTTC 57.751 41.667 0.00 0.00 0.00 3.01
7426 8276 6.002653 ACTTCATCCCATAGGTAAAAGGAC 57.997 41.667 0.00 0.00 0.00 3.85
7480 8330 2.133742 ATCTGCGTTGCAACAGCACC 62.134 55.000 31.10 15.73 38.41 5.01
7493 8345 2.398498 CCGTCTTTGATAGGATCTGCG 58.602 52.381 0.00 0.00 0.00 5.18
7554 8406 3.591254 GAGGTCCTGGCACGTGTCC 62.591 68.421 19.06 18.72 0.00 4.02
7809 8664 1.063806 CGAACTTGAGGAACAGCTCG 58.936 55.000 0.00 0.00 0.00 5.03
7903 8762 0.675837 TCGTCTGACCGACTACCTGG 60.676 60.000 1.55 0.00 40.59 4.45
7913 8772 3.008330 TCTTGCTACTACTCGTCTGACC 58.992 50.000 1.55 0.00 0.00 4.02
7971 8833 0.395862 TTTTTGTTCACCTCCGGGCA 60.396 50.000 0.00 0.00 35.63 5.36
7973 8835 1.272212 CCATTTTTGTTCACCTCCGGG 59.728 52.381 0.00 0.00 38.88 5.73
7974 8836 1.272212 CCCATTTTTGTTCACCTCCGG 59.728 52.381 0.00 0.00 0.00 5.14
7975 8837 2.030274 GTCCCATTTTTGTTCACCTCCG 60.030 50.000 0.00 0.00 0.00 4.63
7976 8838 3.230976 AGTCCCATTTTTGTTCACCTCC 58.769 45.455 0.00 0.00 0.00 4.30
7977 8839 4.022849 CAGAGTCCCATTTTTGTTCACCTC 60.023 45.833 0.00 0.00 0.00 3.85
7978 8840 3.891366 CAGAGTCCCATTTTTGTTCACCT 59.109 43.478 0.00 0.00 0.00 4.00
7979 8841 3.888930 TCAGAGTCCCATTTTTGTTCACC 59.111 43.478 0.00 0.00 0.00 4.02
7980 8842 5.514274 TTCAGAGTCCCATTTTTGTTCAC 57.486 39.130 0.00 0.00 0.00 3.18
7981 8843 5.449862 CGTTTCAGAGTCCCATTTTTGTTCA 60.450 40.000 0.00 0.00 0.00 3.18
7985 8847 3.317993 ACCGTTTCAGAGTCCCATTTTTG 59.682 43.478 0.00 0.00 0.00 2.44
7986 8848 3.317993 CACCGTTTCAGAGTCCCATTTTT 59.682 43.478 0.00 0.00 0.00 1.94
7988 8850 2.504367 CACCGTTTCAGAGTCCCATTT 58.496 47.619 0.00 0.00 0.00 2.32
7990 8852 0.324943 CCACCGTTTCAGAGTCCCAT 59.675 55.000 0.00 0.00 0.00 4.00
7991 8853 1.752198 CCACCGTTTCAGAGTCCCA 59.248 57.895 0.00 0.00 0.00 4.37
7992 8854 1.671379 GCCACCGTTTCAGAGTCCC 60.671 63.158 0.00 0.00 0.00 4.46
7993 8855 2.027625 CGCCACCGTTTCAGAGTCC 61.028 63.158 0.00 0.00 0.00 3.85
7994 8856 3.550656 CGCCACCGTTTCAGAGTC 58.449 61.111 0.00 0.00 0.00 3.36
8052 8916 3.310193 AGGTTAGAGATAAGAGGGGCAC 58.690 50.000 0.00 0.00 0.00 5.01
8054 8918 4.743124 ACTAGGTTAGAGATAAGAGGGGC 58.257 47.826 0.00 0.00 0.00 5.80
8083 8947 4.580167 AGAGACAAGAGAGATCCATCGAAG 59.420 45.833 0.00 0.00 0.00 3.79
8095 8959 3.190327 CGCAGAGAAGAAGAGACAAGAGA 59.810 47.826 0.00 0.00 0.00 3.10
8096 8960 3.190327 TCGCAGAGAAGAAGAGACAAGAG 59.810 47.826 0.00 0.00 0.00 2.85
8097 8961 3.057876 GTCGCAGAGAAGAAGAGACAAGA 60.058 47.826 0.00 0.00 36.95 3.02
8098 8962 3.241701 GTCGCAGAGAAGAAGAGACAAG 58.758 50.000 0.00 0.00 36.95 3.16
8099 8963 2.029828 GGTCGCAGAGAAGAAGAGACAA 60.030 50.000 0.00 0.00 36.95 3.18
8100 8964 1.542030 GGTCGCAGAGAAGAAGAGACA 59.458 52.381 0.00 0.00 36.95 3.41
8101 8965 1.466697 CGGTCGCAGAGAAGAAGAGAC 60.467 57.143 0.00 0.00 36.95 3.36
8138 9002 5.183713 CCTTACAAGATCAGCCAATTCACAA 59.816 40.000 0.00 0.00 0.00 3.33
8227 9095 1.154263 GTTCTCGACCACCGACTCG 60.154 63.158 0.00 0.00 43.23 4.18
8238 9106 1.550524 CCAGGTTCATCAGGTTCTCGA 59.449 52.381 0.00 0.00 0.00 4.04
8239 9107 1.276421 ACCAGGTTCATCAGGTTCTCG 59.724 52.381 0.00 0.00 0.00 4.04
8283 9159 2.162408 CGGGAGAAAATGCAAGAGAACC 59.838 50.000 0.00 0.00 0.00 3.62
8359 9235 2.045561 TGTTCCGGACAAAGCAAAGA 57.954 45.000 1.83 0.00 34.69 2.52
8426 9302 0.401395 TCCATCACCCCCTACCATCC 60.401 60.000 0.00 0.00 0.00 3.51
8429 9305 0.345146 TCATCCATCACCCCCTACCA 59.655 55.000 0.00 0.00 0.00 3.25
8431 9307 2.103153 TCTCATCCATCACCCCCTAC 57.897 55.000 0.00 0.00 0.00 3.18
8433 9309 1.442773 CATCTCATCCATCACCCCCT 58.557 55.000 0.00 0.00 0.00 4.79
8436 9312 1.072965 GACCCATCTCATCCATCACCC 59.927 57.143 0.00 0.00 0.00 4.61
8439 9315 1.051008 CCGACCCATCTCATCCATCA 58.949 55.000 0.00 0.00 0.00 3.07
8440 9316 1.001406 GTCCGACCCATCTCATCCATC 59.999 57.143 0.00 0.00 0.00 3.51
8441 9317 1.051812 GTCCGACCCATCTCATCCAT 58.948 55.000 0.00 0.00 0.00 3.41
8442 9318 0.032117 AGTCCGACCCATCTCATCCA 60.032 55.000 0.00 0.00 0.00 3.41
8658 10240 4.575973 ATCTCCATGGCGCTGGGC 62.576 66.667 15.05 8.35 42.51 5.36
8659 10241 2.593725 CATCTCCATGGCGCTGGG 60.594 66.667 15.05 10.56 36.89 4.45
8660 10242 2.593725 CCATCTCCATGGCGCTGG 60.594 66.667 10.09 10.09 43.55 4.85
8668 10250 0.769776 CCCTGCCCTACCATCTCCAT 60.770 60.000 0.00 0.00 0.00 3.41
8695 10277 1.226688 TTCGAATCGAGCGCTGGAG 60.227 57.895 26.18 13.75 37.14 3.86
8696 10278 1.516386 GTTCGAATCGAGCGCTGGA 60.516 57.895 24.66 24.66 37.14 3.86
8698 10280 1.746727 CTGGTTCGAATCGAGCGCTG 61.747 60.000 18.48 7.71 37.94 5.18
8699 10281 1.517257 CTGGTTCGAATCGAGCGCT 60.517 57.895 11.27 11.27 37.94 5.92
8700 10282 2.998667 CTGGTTCGAATCGAGCGC 59.001 61.111 12.96 0.00 37.94 5.92
8701 10283 2.998667 GCTGGTTCGAATCGAGCG 59.001 61.111 12.96 4.28 37.94 5.03
8702 10284 2.517450 CCGCTGGTTCGAATCGAGC 61.517 63.158 17.57 17.57 37.14 5.03
8703 10285 1.878522 CCCGCTGGTTCGAATCGAG 60.879 63.158 5.24 2.28 37.14 4.04
8704 10286 2.183300 CCCGCTGGTTCGAATCGA 59.817 61.111 0.00 0.00 0.00 3.59
8705 10287 2.125673 ACCCGCTGGTTCGAATCG 60.126 61.111 0.00 0.00 44.75 3.34
8706 10288 2.106683 CCACCCGCTGGTTCGAATC 61.107 63.158 0.00 0.00 44.75 2.52
8707 10289 2.046314 CCACCCGCTGGTTCGAAT 60.046 61.111 0.00 0.00 44.75 3.34
8708 10290 3.234630 CTCCACCCGCTGGTTCGAA 62.235 63.158 0.00 0.00 44.75 3.71
8709 10291 3.691342 CTCCACCCGCTGGTTCGA 61.691 66.667 0.00 0.00 44.75 3.71
8710 10292 2.558554 CTACTCCACCCGCTGGTTCG 62.559 65.000 0.00 0.00 44.75 3.95
8711 10293 1.218316 CTACTCCACCCGCTGGTTC 59.782 63.158 0.00 0.00 44.75 3.62
8712 10294 2.955881 GCTACTCCACCCGCTGGTT 61.956 63.158 0.00 0.00 44.75 3.67
8714 10296 4.514577 CGCTACTCCACCCGCTGG 62.515 72.222 0.00 0.00 42.29 4.85
8715 10297 4.514577 CCGCTACTCCACCCGCTG 62.515 72.222 0.00 0.00 0.00 5.18
8717 10299 4.814294 CACCGCTACTCCACCCGC 62.814 72.222 0.00 0.00 0.00 6.13
8718 10300 4.143333 CCACCGCTACTCCACCCG 62.143 72.222 0.00 0.00 0.00 5.28
8767 10360 2.879070 GCCTGATCACAGATGCGCG 61.879 63.158 0.00 0.00 46.03 6.86
8776 10369 4.554036 GCCCCCGAGCCTGATCAC 62.554 72.222 0.00 0.00 0.00 3.06
8777 10370 4.804420 AGCCCCCGAGCCTGATCA 62.804 66.667 0.00 0.00 0.00 2.92
8818 10411 2.330041 CCACCCGTGTTGCGAAAC 59.670 61.111 0.00 0.00 44.77 2.78
8819 10412 2.902846 CCCACCCGTGTTGCGAAA 60.903 61.111 0.00 0.00 44.77 3.46
8820 10413 4.178169 ACCCACCCGTGTTGCGAA 62.178 61.111 0.00 0.00 44.77 4.70
8821 10414 4.920112 CACCCACCCGTGTTGCGA 62.920 66.667 0.00 0.00 44.77 5.10
8822 10415 4.920112 TCACCCACCCGTGTTGCG 62.920 66.667 0.00 0.00 40.95 4.85
8823 10416 2.517402 TTCACCCACCCGTGTTGC 60.517 61.111 0.00 0.00 35.18 4.17
8824 10417 1.153046 ACTTCACCCACCCGTGTTG 60.153 57.895 0.00 0.00 35.18 3.33
8825 10418 1.153046 CACTTCACCCACCCGTGTT 60.153 57.895 0.00 0.00 35.18 3.32
8826 10419 2.067605 TCACTTCACCCACCCGTGT 61.068 57.895 0.00 0.00 35.18 4.49
8827 10420 1.597027 GTCACTTCACCCACCCGTG 60.597 63.158 0.00 0.00 34.93 4.94
8828 10421 1.628238 TTGTCACTTCACCCACCCGT 61.628 55.000 0.00 0.00 0.00 5.28
8829 10422 0.884704 CTTGTCACTTCACCCACCCG 60.885 60.000 0.00 0.00 0.00 5.28
8830 10423 0.182775 ACTTGTCACTTCACCCACCC 59.817 55.000 0.00 0.00 0.00 4.61
8831 10424 1.134220 TCACTTGTCACTTCACCCACC 60.134 52.381 0.00 0.00 0.00 4.61
8832 10425 2.213499 CTCACTTGTCACTTCACCCAC 58.787 52.381 0.00 0.00 0.00 4.61
8833 10426 1.140852 CCTCACTTGTCACTTCACCCA 59.859 52.381 0.00 0.00 0.00 4.51
8834 10427 1.416401 TCCTCACTTGTCACTTCACCC 59.584 52.381 0.00 0.00 0.00 4.61
8835 10428 2.103263 ACTCCTCACTTGTCACTTCACC 59.897 50.000 0.00 0.00 0.00 4.02
8836 10429 3.126831 CACTCCTCACTTGTCACTTCAC 58.873 50.000 0.00 0.00 0.00 3.18
8837 10430 3.459232 CACTCCTCACTTGTCACTTCA 57.541 47.619 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.