Multiple sequence alignment - TraesCS7D01G165700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G165700 chr7D 100.000 2411 0 0 1 2411 115163130 115165540 0.000000e+00 4453.0
1 TraesCS7D01G165700 chr7D 90.014 1382 138 0 1 1382 589244642 589246023 0.000000e+00 1788.0
2 TraesCS7D01G165700 chr7D 93.600 250 11 5 2162 2411 119448366 119448122 3.790000e-98 368.0
3 TraesCS7D01G165700 chr2B 89.090 1439 150 6 4 1438 223145355 223143920 0.000000e+00 1781.0
4 TraesCS7D01G165700 chr4B 92.946 1205 79 4 237 1440 17842069 17843268 0.000000e+00 1749.0
5 TraesCS7D01G165700 chr4B 78.186 1444 306 8 1 1440 44463186 44464624 0.000000e+00 913.0
6 TraesCS7D01G165700 chr4B 90.795 239 22 0 1 239 17832129 17832367 1.080000e-83 320.0
7 TraesCS7D01G165700 chr7B 85.466 1438 205 4 4 1438 742137527 742136091 0.000000e+00 1495.0
8 TraesCS7D01G165700 chr7B 87.115 520 67 0 1667 2186 635903438 635903957 7.420000e-165 590.0
9 TraesCS7D01G165700 chr7B 95.814 215 6 3 1439 1652 74736485 74736697 6.380000e-91 344.0
10 TraesCS7D01G165700 chr6B 88.143 953 112 1 486 1438 252819004 252818053 0.000000e+00 1133.0
11 TraesCS7D01G165700 chr6B 93.231 325 21 1 1 325 694944858 694945181 6.030000e-131 477.0
12 TraesCS7D01G165700 chr1D 89.839 807 80 2 633 1438 433112811 433113616 0.000000e+00 1035.0
13 TraesCS7D01G165700 chr1D 95.969 521 21 0 1666 2186 337205734 337205214 0.000000e+00 846.0
14 TraesCS7D01G165700 chr1D 89.796 637 64 1 1 637 433107837 433108472 0.000000e+00 815.0
15 TraesCS7D01G165700 chr1D 96.522 230 8 0 2182 2411 483984185 483984414 4.860000e-102 381.0
16 TraesCS7D01G165700 chr1D 93.548 248 14 1 2164 2411 247846158 247846403 3.790000e-98 368.0
17 TraesCS7D01G165700 chr1A 93.580 514 33 0 1673 2186 556598002 556597489 0.000000e+00 767.0
18 TraesCS7D01G165700 chr1A 83.646 373 55 5 1055 1423 473907971 473907601 1.770000e-91 346.0
19 TraesCS7D01G165700 chr1A 92.771 166 10 2 1445 1609 343435503 343435339 3.100000e-59 239.0
20 TraesCS7D01G165700 chr1A 97.872 47 1 0 1604 1650 343426726 343426680 5.520000e-12 82.4
21 TraesCS7D01G165700 chr3D 91.423 548 46 1 701 1248 286874917 286875463 0.000000e+00 750.0
22 TraesCS7D01G165700 chr3D 89.251 521 56 0 1666 2186 326812689 326813209 0.000000e+00 652.0
23 TraesCS7D01G165700 chr7A 86.756 521 69 0 1666 2186 699833599 699834119 4.470000e-162 580.0
24 TraesCS7D01G165700 chr5A 87.135 513 65 1 1667 2178 395282953 395283465 4.470000e-162 580.0
25 TraesCS7D01G165700 chr4A 86.486 518 68 2 1670 2186 662058588 662058072 3.480000e-158 568.0
26 TraesCS7D01G165700 chr4A 85.962 520 73 0 1667 2186 589484400 589484919 7.530000e-155 556.0
27 TraesCS7D01G165700 chr4A 96.059 203 7 1 1442 1644 321288938 321288737 1.790000e-86 329.0
28 TraesCS7D01G165700 chr3B 85.824 522 72 2 1666 2186 104265222 104265742 9.740000e-154 553.0
29 TraesCS7D01G165700 chr3B 78.535 396 76 9 1049 1438 77878949 77878557 3.980000e-63 252.0
30 TraesCS7D01G165700 chr6D 97.778 225 5 0 2187 2411 446139897 446139673 2.910000e-104 388.0
31 TraesCS7D01G165700 chr6D 96.889 225 7 0 2187 2411 30736244 30736020 6.290000e-101 377.0
32 TraesCS7D01G165700 chr5D 97.345 226 5 1 2186 2411 281478532 281478756 1.350000e-102 383.0
33 TraesCS7D01G165700 chr5D 96.889 225 7 0 2187 2411 179296383 179296159 6.290000e-101 377.0
34 TraesCS7D01G165700 chr4D 97.333 225 6 0 2187 2411 65919682 65919458 1.350000e-102 383.0
35 TraesCS7D01G165700 chr4D 97.333 225 6 0 2187 2411 421273814 421273590 1.350000e-102 383.0
36 TraesCS7D01G165700 chr2A 81.974 233 37 5 1208 1437 10505480 10505250 2.450000e-45 193.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G165700 chr7D 115163130 115165540 2410 False 4453 4453 100.000 1 2411 1 chr7D.!!$F1 2410
1 TraesCS7D01G165700 chr7D 589244642 589246023 1381 False 1788 1788 90.014 1 1382 1 chr7D.!!$F2 1381
2 TraesCS7D01G165700 chr2B 223143920 223145355 1435 True 1781 1781 89.090 4 1438 1 chr2B.!!$R1 1434
3 TraesCS7D01G165700 chr4B 17842069 17843268 1199 False 1749 1749 92.946 237 1440 1 chr4B.!!$F2 1203
4 TraesCS7D01G165700 chr4B 44463186 44464624 1438 False 913 913 78.186 1 1440 1 chr4B.!!$F3 1439
5 TraesCS7D01G165700 chr7B 742136091 742137527 1436 True 1495 1495 85.466 4 1438 1 chr7B.!!$R1 1434
6 TraesCS7D01G165700 chr7B 635903438 635903957 519 False 590 590 87.115 1667 2186 1 chr7B.!!$F2 519
7 TraesCS7D01G165700 chr6B 252818053 252819004 951 True 1133 1133 88.143 486 1438 1 chr6B.!!$R1 952
8 TraesCS7D01G165700 chr1D 433112811 433113616 805 False 1035 1035 89.839 633 1438 1 chr1D.!!$F3 805
9 TraesCS7D01G165700 chr1D 337205214 337205734 520 True 846 846 95.969 1666 2186 1 chr1D.!!$R1 520
10 TraesCS7D01G165700 chr1D 433107837 433108472 635 False 815 815 89.796 1 637 1 chr1D.!!$F2 636
11 TraesCS7D01G165700 chr1A 556597489 556598002 513 True 767 767 93.580 1673 2186 1 chr1A.!!$R4 513
12 TraesCS7D01G165700 chr3D 286874917 286875463 546 False 750 750 91.423 701 1248 1 chr3D.!!$F1 547
13 TraesCS7D01G165700 chr3D 326812689 326813209 520 False 652 652 89.251 1666 2186 1 chr3D.!!$F2 520
14 TraesCS7D01G165700 chr7A 699833599 699834119 520 False 580 580 86.756 1666 2186 1 chr7A.!!$F1 520
15 TraesCS7D01G165700 chr5A 395282953 395283465 512 False 580 580 87.135 1667 2178 1 chr5A.!!$F1 511
16 TraesCS7D01G165700 chr4A 662058072 662058588 516 True 568 568 86.486 1670 2186 1 chr4A.!!$R2 516
17 TraesCS7D01G165700 chr4A 589484400 589484919 519 False 556 556 85.962 1667 2186 1 chr4A.!!$F1 519
18 TraesCS7D01G165700 chr3B 104265222 104265742 520 False 553 553 85.824 1666 2186 1 chr3B.!!$F1 520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
249 251 0.106708 GGATATGCACCTCGCCAAGA 59.893 55.0 0.0 0.0 41.33 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2210 2212 0.039527 GCGTGTGCGGAGGAAATTTT 60.04 50.0 0.0 0.0 38.78 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
131 132 1.034838 ACACCAAAGCGAACTTGCCA 61.035 50.000 0.00 0.00 35.85 4.92
146 147 7.413657 GCGAACTTGCCATTTTAATAGAGTGTA 60.414 37.037 0.00 0.00 0.00 2.90
184 186 2.892425 GAGCTTGGCGGATGGACG 60.892 66.667 0.00 0.00 0.00 4.79
219 221 5.185635 ACATTTTTGGTCGATGGACATTGAT 59.814 36.000 10.22 0.00 45.28 2.57
249 251 0.106708 GGATATGCACCTCGCCAAGA 59.893 55.000 0.00 0.00 41.33 3.02
275 277 1.068434 CACCGATTTTGTTGCTTGGGT 59.932 47.619 0.00 0.00 0.00 4.51
360 362 1.371183 CTCCTTCGCAGGTGGTTCA 59.629 57.895 0.00 0.00 41.69 3.18
546 548 2.689034 GGTGTGGAGGAGGAGGGG 60.689 72.222 0.00 0.00 0.00 4.79
666 668 5.077134 ACGGTAAGGAATGGTTACTACAC 57.923 43.478 0.00 0.00 32.02 2.90
708 710 6.576185 TGATGATATACGGGACATGATCATG 58.424 40.000 29.95 29.95 44.15 3.07
720 722 5.240844 GGACATGATCATGATGATTTGCTGA 59.759 40.000 36.37 0.00 41.20 4.26
789 791 2.296752 TCCTGTTCATGTTACGGTCGAA 59.703 45.455 0.00 0.00 0.00 3.71
979 981 0.681887 TGGGTCGTTCGATGGCTCTA 60.682 55.000 0.00 0.00 0.00 2.43
1068 1070 5.364778 CGGGTGATATTCCACTGTAATGAA 58.635 41.667 0.00 0.00 37.24 2.57
1227 1229 0.327924 ATGGGCATCTGGTTCGTGAA 59.672 50.000 0.00 0.00 0.00 3.18
1459 1461 9.503399 AAAAAGAGTACTACCATTTACCAGAAG 57.497 33.333 0.00 0.00 0.00 2.85
1460 1462 7.793948 AAGAGTACTACCATTTACCAGAAGT 57.206 36.000 0.00 0.00 0.00 3.01
1461 1463 8.890410 AAGAGTACTACCATTTACCAGAAGTA 57.110 34.615 0.00 0.00 0.00 2.24
1462 1464 8.291191 AGAGTACTACCATTTACCAGAAGTAC 57.709 38.462 0.00 0.00 38.59 2.73
1463 1465 8.114743 AGAGTACTACCATTTACCAGAAGTACT 58.885 37.037 10.99 10.99 46.51 2.73
1464 1466 8.661752 AGTACTACCATTTACCAGAAGTACTT 57.338 34.615 8.13 8.13 43.28 2.24
1465 1467 8.529476 AGTACTACCATTTACCAGAAGTACTTG 58.471 37.037 14.14 0.00 43.28 3.16
1466 1468 7.312415 ACTACCATTTACCAGAAGTACTTGT 57.688 36.000 14.14 6.06 0.00 3.16
1467 1469 8.426569 ACTACCATTTACCAGAAGTACTTGTA 57.573 34.615 14.14 6.52 0.00 2.41
1468 1470 9.043548 ACTACCATTTACCAGAAGTACTTGTAT 57.956 33.333 14.14 3.43 29.06 2.29
1469 1471 9.530633 CTACCATTTACCAGAAGTACTTGTATC 57.469 37.037 14.14 0.00 29.06 2.24
1470 1472 8.147244 ACCATTTACCAGAAGTACTTGTATCT 57.853 34.615 14.14 0.19 29.06 1.98
1471 1473 8.041323 ACCATTTACCAGAAGTACTTGTATCTG 58.959 37.037 14.14 13.61 39.16 2.90
1477 1479 6.516739 CAGAAGTACTTGTATCTGGTGAGA 57.483 41.667 14.14 0.00 36.50 3.27
1478 1480 6.559810 CAGAAGTACTTGTATCTGGTGAGAG 58.440 44.000 14.14 0.00 36.50 3.20
1479 1481 5.654650 AGAAGTACTTGTATCTGGTGAGAGG 59.345 44.000 14.14 0.00 0.00 3.69
1480 1482 5.194473 AGTACTTGTATCTGGTGAGAGGA 57.806 43.478 0.00 0.00 0.00 3.71
1481 1483 5.580998 AGTACTTGTATCTGGTGAGAGGAA 58.419 41.667 0.00 0.00 0.00 3.36
1482 1484 5.654650 AGTACTTGTATCTGGTGAGAGGAAG 59.345 44.000 0.00 0.00 0.00 3.46
1483 1485 4.421131 ACTTGTATCTGGTGAGAGGAAGT 58.579 43.478 0.00 0.00 0.00 3.01
1484 1486 5.580998 ACTTGTATCTGGTGAGAGGAAGTA 58.419 41.667 0.00 0.00 29.37 2.24
1485 1487 6.017192 ACTTGTATCTGGTGAGAGGAAGTAA 58.983 40.000 0.00 0.00 29.37 2.24
1486 1488 6.670027 ACTTGTATCTGGTGAGAGGAAGTAAT 59.330 38.462 0.00 0.00 29.37 1.89
1487 1489 7.181125 ACTTGTATCTGGTGAGAGGAAGTAATT 59.819 37.037 0.00 0.00 29.37 1.40
1488 1490 8.603898 TTGTATCTGGTGAGAGGAAGTAATTA 57.396 34.615 0.00 0.00 0.00 1.40
1489 1491 8.783660 TGTATCTGGTGAGAGGAAGTAATTAT 57.216 34.615 0.00 0.00 0.00 1.28
1490 1492 9.213777 TGTATCTGGTGAGAGGAAGTAATTATT 57.786 33.333 0.00 0.00 0.00 1.40
1525 1527 6.824305 TTTCTGATTTCCATCACTTTCTCC 57.176 37.500 0.00 0.00 34.22 3.71
1526 1528 5.503634 TCTGATTTCCATCACTTTCTCCA 57.496 39.130 0.00 0.00 34.22 3.86
1527 1529 5.248640 TCTGATTTCCATCACTTTCTCCAC 58.751 41.667 0.00 0.00 34.22 4.02
1528 1530 5.013495 TCTGATTTCCATCACTTTCTCCACT 59.987 40.000 0.00 0.00 34.22 4.00
1529 1531 5.634118 TGATTTCCATCACTTTCTCCACTT 58.366 37.500 0.00 0.00 34.22 3.16
1530 1532 5.474532 TGATTTCCATCACTTTCTCCACTTG 59.525 40.000 0.00 0.00 34.22 3.16
1531 1533 4.705110 TTCCATCACTTTCTCCACTTGA 57.295 40.909 0.00 0.00 0.00 3.02
1532 1534 4.916041 TCCATCACTTTCTCCACTTGAT 57.084 40.909 0.00 0.00 0.00 2.57
1533 1535 4.582869 TCCATCACTTTCTCCACTTGATG 58.417 43.478 0.00 0.00 42.10 3.07
1534 1536 3.128242 CCATCACTTTCTCCACTTGATGC 59.872 47.826 4.66 0.00 41.43 3.91
1535 1537 3.777106 TCACTTTCTCCACTTGATGCT 57.223 42.857 0.00 0.00 0.00 3.79
1536 1538 4.090761 TCACTTTCTCCACTTGATGCTT 57.909 40.909 0.00 0.00 0.00 3.91
1537 1539 4.067896 TCACTTTCTCCACTTGATGCTTC 58.932 43.478 0.00 0.00 0.00 3.86
1538 1540 3.190118 CACTTTCTCCACTTGATGCTTCC 59.810 47.826 0.00 0.00 0.00 3.46
1539 1541 2.496899 TTCTCCACTTGATGCTTCCC 57.503 50.000 0.00 0.00 0.00 3.97
1540 1542 1.661463 TCTCCACTTGATGCTTCCCT 58.339 50.000 0.00 0.00 0.00 4.20
1541 1543 1.280133 TCTCCACTTGATGCTTCCCTG 59.720 52.381 0.00 0.00 0.00 4.45
1542 1544 1.004044 CTCCACTTGATGCTTCCCTGT 59.996 52.381 0.00 0.00 0.00 4.00
1543 1545 2.237143 CTCCACTTGATGCTTCCCTGTA 59.763 50.000 0.00 0.00 0.00 2.74
1544 1546 2.642311 TCCACTTGATGCTTCCCTGTAA 59.358 45.455 0.00 0.00 0.00 2.41
1545 1547 3.073798 TCCACTTGATGCTTCCCTGTAAA 59.926 43.478 0.00 0.00 0.00 2.01
1546 1548 3.441572 CCACTTGATGCTTCCCTGTAAAG 59.558 47.826 0.00 0.00 0.00 1.85
1547 1549 4.326826 CACTTGATGCTTCCCTGTAAAGA 58.673 43.478 0.00 0.00 0.00 2.52
1548 1550 4.394300 CACTTGATGCTTCCCTGTAAAGAG 59.606 45.833 0.00 0.00 0.00 2.85
1549 1551 2.991250 TGATGCTTCCCTGTAAAGAGC 58.009 47.619 0.00 0.00 0.00 4.09
1550 1552 2.305635 TGATGCTTCCCTGTAAAGAGCA 59.694 45.455 0.00 0.00 46.11 4.26
1551 1553 2.949177 TGCTTCCCTGTAAAGAGCAA 57.051 45.000 0.00 0.00 40.09 3.91
1552 1554 2.504367 TGCTTCCCTGTAAAGAGCAAC 58.496 47.619 0.00 0.00 40.09 4.17
1553 1555 2.158682 TGCTTCCCTGTAAAGAGCAACA 60.159 45.455 0.00 0.00 40.09 3.33
1554 1556 3.084786 GCTTCCCTGTAAAGAGCAACAT 58.915 45.455 0.00 0.00 33.68 2.71
1555 1557 3.507622 GCTTCCCTGTAAAGAGCAACATT 59.492 43.478 0.00 0.00 33.68 2.71
1556 1558 4.616835 GCTTCCCTGTAAAGAGCAACATTG 60.617 45.833 0.00 0.00 33.68 2.82
1557 1559 4.098914 TCCCTGTAAAGAGCAACATTGT 57.901 40.909 0.00 0.00 0.00 2.71
1558 1560 5.235850 TCCCTGTAAAGAGCAACATTGTA 57.764 39.130 0.00 0.00 0.00 2.41
1559 1561 5.815581 TCCCTGTAAAGAGCAACATTGTAT 58.184 37.500 0.00 0.00 0.00 2.29
1560 1562 6.953101 TCCCTGTAAAGAGCAACATTGTATA 58.047 36.000 0.00 0.00 0.00 1.47
1561 1563 7.573710 TCCCTGTAAAGAGCAACATTGTATAT 58.426 34.615 0.00 0.00 0.00 0.86
1562 1564 8.710239 TCCCTGTAAAGAGCAACATTGTATATA 58.290 33.333 0.00 0.00 0.00 0.86
1563 1565 9.507329 CCCTGTAAAGAGCAACATTGTATATAT 57.493 33.333 0.00 0.00 0.00 0.86
1593 1595 2.414058 TTTTATGCCACTTGTGTGCG 57.586 45.000 0.00 0.00 42.54 5.34
1594 1596 1.313772 TTTATGCCACTTGTGTGCGT 58.686 45.000 11.50 11.50 42.54 5.24
1595 1597 0.871722 TTATGCCACTTGTGTGCGTC 59.128 50.000 10.55 0.00 42.54 5.19
1596 1598 0.250081 TATGCCACTTGTGTGCGTCA 60.250 50.000 10.55 0.00 42.54 4.35
1597 1599 1.100463 ATGCCACTTGTGTGCGTCAA 61.100 50.000 0.00 0.00 42.54 3.18
1598 1600 1.009675 GCCACTTGTGTGCGTCAAG 60.010 57.895 11.80 11.80 45.15 3.02
1605 1607 4.983215 CTTGTGTGCGTCAAGTTATACA 57.017 40.909 7.03 0.00 37.90 2.29
1606 1608 5.530519 CTTGTGTGCGTCAAGTTATACAT 57.469 39.130 7.03 0.00 37.90 2.29
1607 1609 6.641176 CTTGTGTGCGTCAAGTTATACATA 57.359 37.500 7.03 0.00 37.90 2.29
1608 1610 7.234187 CTTGTGTGCGTCAAGTTATACATAT 57.766 36.000 7.03 0.00 37.90 1.78
1609 1611 8.347729 CTTGTGTGCGTCAAGTTATACATATA 57.652 34.615 7.03 0.00 37.90 0.86
1610 1612 8.880878 TTGTGTGCGTCAAGTTATACATATAT 57.119 30.769 0.00 0.00 0.00 0.86
1611 1613 8.515473 TGTGTGCGTCAAGTTATACATATATC 57.485 34.615 0.00 0.00 0.00 1.63
1612 1614 7.597369 TGTGTGCGTCAAGTTATACATATATCC 59.403 37.037 0.00 0.00 0.00 2.59
1613 1615 7.597369 GTGTGCGTCAAGTTATACATATATCCA 59.403 37.037 0.00 0.00 0.00 3.41
1614 1616 8.145122 TGTGCGTCAAGTTATACATATATCCAA 58.855 33.333 0.00 0.00 0.00 3.53
1615 1617 9.151471 GTGCGTCAAGTTATACATATATCCAAT 57.849 33.333 0.00 0.00 0.00 3.16
1629 1631 8.845227 ACATATATCCAATAAATTTGTGACGCA 58.155 29.630 0.00 0.00 0.00 5.24
1630 1632 9.676195 CATATATCCAATAAATTTGTGACGCAA 57.324 29.630 0.00 0.00 34.87 4.85
1633 1635 7.903995 ATCCAATAAATTTGTGACGCAATTT 57.096 28.000 1.56 2.75 36.89 1.82
1634 1636 7.344910 TCCAATAAATTTGTGACGCAATTTC 57.655 32.000 1.56 0.00 36.89 2.17
1635 1637 6.367422 TCCAATAAATTTGTGACGCAATTTCC 59.633 34.615 1.56 0.00 36.89 3.13
1636 1638 6.146837 CCAATAAATTTGTGACGCAATTTCCA 59.853 34.615 1.56 0.00 36.89 3.53
1637 1639 6.704512 ATAAATTTGTGACGCAATTTCCAC 57.295 33.333 1.56 0.00 36.89 4.02
1638 1640 3.724508 ATTTGTGACGCAATTTCCACA 57.275 38.095 1.56 0.00 36.89 4.17
1639 1641 3.724508 TTTGTGACGCAATTTCCACAT 57.275 38.095 1.56 0.00 39.01 3.21
1640 1642 2.987413 TGTGACGCAATTTCCACATC 57.013 45.000 0.00 0.00 34.96 3.06
1641 1643 2.225467 TGTGACGCAATTTCCACATCA 58.775 42.857 0.00 0.00 34.96 3.07
1642 1644 2.819019 TGTGACGCAATTTCCACATCAT 59.181 40.909 0.00 0.00 34.96 2.45
1643 1645 3.173599 GTGACGCAATTTCCACATCATG 58.826 45.455 0.00 0.00 0.00 3.07
1644 1646 3.080319 TGACGCAATTTCCACATCATGA 58.920 40.909 0.00 0.00 0.00 3.07
1645 1647 3.505293 TGACGCAATTTCCACATCATGAA 59.495 39.130 0.00 0.00 0.00 2.57
1646 1648 3.836949 ACGCAATTTCCACATCATGAAC 58.163 40.909 0.00 0.00 0.00 3.18
1647 1649 3.507233 ACGCAATTTCCACATCATGAACT 59.493 39.130 0.00 0.00 0.00 3.01
1648 1650 4.699735 ACGCAATTTCCACATCATGAACTA 59.300 37.500 0.00 0.00 0.00 2.24
1649 1651 5.163723 ACGCAATTTCCACATCATGAACTAG 60.164 40.000 0.00 0.00 0.00 2.57
1650 1652 5.585390 GCAATTTCCACATCATGAACTAGG 58.415 41.667 0.00 0.00 0.00 3.02
1651 1653 5.357878 GCAATTTCCACATCATGAACTAGGA 59.642 40.000 0.00 2.34 0.00 2.94
1652 1654 6.678900 GCAATTTCCACATCATGAACTAGGAC 60.679 42.308 0.00 0.00 0.00 3.85
1653 1655 4.487714 TTCCACATCATGAACTAGGACC 57.512 45.455 0.00 0.00 0.00 4.46
1654 1656 2.771943 TCCACATCATGAACTAGGACCC 59.228 50.000 0.00 0.00 0.00 4.46
1655 1657 2.774234 CCACATCATGAACTAGGACCCT 59.226 50.000 0.00 0.00 0.00 4.34
1656 1658 3.200825 CCACATCATGAACTAGGACCCTT 59.799 47.826 0.00 0.00 0.00 3.95
1657 1659 4.446371 CACATCATGAACTAGGACCCTTC 58.554 47.826 0.00 0.00 0.00 3.46
1658 1660 4.080919 CACATCATGAACTAGGACCCTTCA 60.081 45.833 0.00 0.00 0.00 3.02
1659 1661 4.723789 ACATCATGAACTAGGACCCTTCAT 59.276 41.667 0.00 0.00 33.11 2.57
1660 1662 4.760530 TCATGAACTAGGACCCTTCATG 57.239 45.455 21.12 21.12 46.08 3.07
1668 1670 5.476983 ACTAGGACCCTTCATGATATTCCA 58.523 41.667 13.00 0.00 0.00 3.53
1696 1698 8.791327 TTCATTATGTGCAAGAGTATTGAAGA 57.209 30.769 0.62 0.00 0.00 2.87
1707 1709 9.774742 GCAAGAGTATTGAAGACGAAATATTTT 57.225 29.630 0.62 0.00 0.00 1.82
1878 1880 5.125417 GGTTCCAAGCAGTGCAAATAGAATA 59.875 40.000 19.20 0.00 0.00 1.75
1879 1881 5.818136 TCCAAGCAGTGCAAATAGAATAC 57.182 39.130 19.20 0.00 0.00 1.89
1942 1944 4.742012 TGATCTCATAGACCCCCTAAGTC 58.258 47.826 0.00 0.00 34.31 3.01
1949 1951 3.463048 AGACCCCCTAAGTCGAAACTA 57.537 47.619 0.00 0.00 39.31 2.24
2023 2025 7.093684 GGATCCTAGAGATTCCGCTTAATTACT 60.094 40.741 3.84 0.00 34.42 2.24
2186 2188 2.680805 CGGTTTGGAGTATGCTGTGGAT 60.681 50.000 0.00 0.00 0.00 3.41
2187 2189 2.684881 GGTTTGGAGTATGCTGTGGATG 59.315 50.000 0.00 0.00 0.00 3.51
2188 2190 3.347216 GTTTGGAGTATGCTGTGGATGT 58.653 45.455 0.00 0.00 0.00 3.06
2189 2191 3.719268 TTGGAGTATGCTGTGGATGTT 57.281 42.857 0.00 0.00 0.00 2.71
2190 2192 2.989909 TGGAGTATGCTGTGGATGTTG 58.010 47.619 0.00 0.00 0.00 3.33
2191 2193 2.292267 GGAGTATGCTGTGGATGTTGG 58.708 52.381 0.00 0.00 0.00 3.77
2192 2194 2.292267 GAGTATGCTGTGGATGTTGGG 58.708 52.381 0.00 0.00 0.00 4.12
2193 2195 1.064463 AGTATGCTGTGGATGTTGGGG 60.064 52.381 0.00 0.00 0.00 4.96
2194 2196 1.064758 GTATGCTGTGGATGTTGGGGA 60.065 52.381 0.00 0.00 0.00 4.81
2195 2197 0.409092 ATGCTGTGGATGTTGGGGAA 59.591 50.000 0.00 0.00 0.00 3.97
2196 2198 0.539438 TGCTGTGGATGTTGGGGAAC 60.539 55.000 0.00 0.00 0.00 3.62
2197 2199 1.586154 GCTGTGGATGTTGGGGAACG 61.586 60.000 0.00 0.00 0.00 3.95
2198 2200 1.586154 CTGTGGATGTTGGGGAACGC 61.586 60.000 0.00 0.00 43.69 4.84
2210 2212 3.926821 GGGGAACGCAGTAATTTCAAA 57.073 42.857 0.00 0.00 45.00 2.69
2211 2213 4.245845 GGGGAACGCAGTAATTTCAAAA 57.754 40.909 0.00 0.00 45.00 2.44
2212 2214 4.623002 GGGGAACGCAGTAATTTCAAAAA 58.377 39.130 0.00 0.00 45.00 1.94
2228 2230 2.415697 AAAAATTTCCTCCGCACACG 57.584 45.000 0.00 0.00 39.67 4.49
2229 2231 0.039527 AAAATTTCCTCCGCACACGC 60.040 50.000 0.00 0.00 38.22 5.34
2230 2232 1.169661 AAATTTCCTCCGCACACGCA 61.170 50.000 0.00 0.00 38.40 5.24
2231 2233 1.577328 AATTTCCTCCGCACACGCAG 61.577 55.000 0.00 0.00 38.40 5.18
2232 2234 4.680237 TTCCTCCGCACACGCAGG 62.680 66.667 0.00 0.00 38.40 4.85
2234 2236 4.457496 CCTCCGCACACGCAGGAT 62.457 66.667 0.00 0.00 39.17 3.24
2235 2237 2.887568 CTCCGCACACGCAGGATC 60.888 66.667 0.00 0.00 39.17 3.36
2236 2238 3.647649 CTCCGCACACGCAGGATCA 62.648 63.158 0.00 0.00 39.17 2.92
2237 2239 2.512286 CCGCACACGCAGGATCAT 60.512 61.111 0.00 0.00 38.40 2.45
2238 2240 2.705220 CGCACACGCAGGATCATG 59.295 61.111 2.22 2.22 38.40 3.07
2239 2241 2.816360 CGCACACGCAGGATCATGG 61.816 63.158 9.76 2.01 38.40 3.66
2240 2242 1.746615 GCACACGCAGGATCATGGT 60.747 57.895 9.76 2.66 38.36 3.55
2241 2243 1.985447 GCACACGCAGGATCATGGTG 61.985 60.000 20.27 20.27 38.36 4.17
2242 2244 0.391528 CACACGCAGGATCATGGTGA 60.392 55.000 25.47 0.00 33.08 4.02
2243 2245 0.543277 ACACGCAGGATCATGGTGAT 59.457 50.000 25.47 13.21 40.34 3.06
2244 2246 0.942252 CACGCAGGATCATGGTGATG 59.058 55.000 18.31 0.00 37.20 3.07
2245 2247 0.816825 ACGCAGGATCATGGTGATGC 60.817 55.000 9.76 3.59 44.29 3.91
2246 2248 0.816421 CGCAGGATCATGGTGATGCA 60.816 55.000 9.76 0.00 46.03 3.96
2247 2249 1.617322 GCAGGATCATGGTGATGCAT 58.383 50.000 9.76 0.00 46.03 3.96
2248 2250 2.786777 GCAGGATCATGGTGATGCATA 58.213 47.619 9.76 0.00 46.03 3.14
2249 2251 2.747989 GCAGGATCATGGTGATGCATAG 59.252 50.000 9.76 4.79 46.03 2.23
2250 2252 2.747989 CAGGATCATGGTGATGCATAGC 59.252 50.000 12.83 0.00 46.03 2.97
2251 2253 2.374170 AGGATCATGGTGATGCATAGCA 59.626 45.455 12.83 4.86 46.03 3.49
2252 2254 3.151554 GGATCATGGTGATGCATAGCAA 58.848 45.455 0.00 0.00 43.55 3.91
2253 2255 3.057736 GGATCATGGTGATGCATAGCAAC 60.058 47.826 0.00 0.00 43.55 4.17
2254 2256 1.941975 TCATGGTGATGCATAGCAACG 59.058 47.619 0.00 1.35 43.62 4.10
2255 2257 1.941975 CATGGTGATGCATAGCAACGA 59.058 47.619 0.00 0.00 43.62 3.85
2256 2258 1.655484 TGGTGATGCATAGCAACGAG 58.345 50.000 0.00 0.00 43.62 4.18
2257 2259 1.206849 TGGTGATGCATAGCAACGAGA 59.793 47.619 0.00 0.00 43.62 4.04
2258 2260 1.863454 GGTGATGCATAGCAACGAGAG 59.137 52.381 0.00 0.00 43.62 3.20
2259 2261 1.863454 GTGATGCATAGCAACGAGAGG 59.137 52.381 0.00 0.00 43.62 3.69
2260 2262 1.202568 TGATGCATAGCAACGAGAGGG 60.203 52.381 0.00 0.00 43.62 4.30
2261 2263 0.107456 ATGCATAGCAACGAGAGGGG 59.893 55.000 0.00 0.00 43.62 4.79
2262 2264 0.975556 TGCATAGCAACGAGAGGGGA 60.976 55.000 0.00 0.00 34.76 4.81
2263 2265 0.249657 GCATAGCAACGAGAGGGGAG 60.250 60.000 0.00 0.00 0.00 4.30
2264 2266 1.403814 CATAGCAACGAGAGGGGAGA 58.596 55.000 0.00 0.00 0.00 3.71
2265 2267 1.339610 CATAGCAACGAGAGGGGAGAG 59.660 57.143 0.00 0.00 0.00 3.20
2266 2268 0.331954 TAGCAACGAGAGGGGAGAGT 59.668 55.000 0.00 0.00 0.00 3.24
2267 2269 1.216710 GCAACGAGAGGGGAGAGTG 59.783 63.158 0.00 0.00 0.00 3.51
2268 2270 1.536943 GCAACGAGAGGGGAGAGTGT 61.537 60.000 0.00 0.00 0.00 3.55
2269 2271 0.969894 CAACGAGAGGGGAGAGTGTT 59.030 55.000 0.00 0.00 0.00 3.32
2270 2272 0.969894 AACGAGAGGGGAGAGTGTTG 59.030 55.000 0.00 0.00 0.00 3.33
2271 2273 0.178958 ACGAGAGGGGAGAGTGTTGT 60.179 55.000 0.00 0.00 0.00 3.32
2272 2274 0.528470 CGAGAGGGGAGAGTGTTGTC 59.472 60.000 0.00 0.00 0.00 3.18
2273 2275 0.899019 GAGAGGGGAGAGTGTTGTCC 59.101 60.000 0.00 0.00 36.03 4.02
2274 2276 0.191064 AGAGGGGAGAGTGTTGTCCA 59.809 55.000 0.00 0.00 38.50 4.02
2275 2277 0.321996 GAGGGGAGAGTGTTGTCCAC 59.678 60.000 0.00 0.00 40.47 4.02
2276 2278 1.472662 AGGGGAGAGTGTTGTCCACG 61.473 60.000 0.00 0.00 44.77 4.94
2278 2280 4.748514 AGGGGAGAGTGTTGTCCACGTA 62.749 54.545 0.00 0.00 44.77 3.57
2283 2285 3.206090 GTGTTGTCCACGTACCCTC 57.794 57.895 0.00 0.00 33.61 4.30
2284 2286 0.665369 GTGTTGTCCACGTACCCTCG 60.665 60.000 0.00 0.00 33.61 4.63
2285 2287 1.108727 TGTTGTCCACGTACCCTCGT 61.109 55.000 0.00 0.00 45.10 4.18
2286 2288 0.881118 GTTGTCCACGTACCCTCGTA 59.119 55.000 0.00 0.00 42.27 3.43
2287 2289 1.135575 GTTGTCCACGTACCCTCGTAG 60.136 57.143 0.00 0.00 42.27 3.51
2288 2290 0.324614 TGTCCACGTACCCTCGTAGA 59.675 55.000 0.00 0.00 42.27 2.59
2289 2291 0.729690 GTCCACGTACCCTCGTAGAC 59.270 60.000 0.00 2.79 42.50 2.59
2290 2292 0.392998 TCCACGTACCCTCGTAGACC 60.393 60.000 0.00 0.00 42.27 3.85
2291 2293 1.709147 CCACGTACCCTCGTAGACCG 61.709 65.000 0.00 0.00 42.27 4.79
2292 2294 0.740868 CACGTACCCTCGTAGACCGA 60.741 60.000 0.00 0.00 45.00 4.69
2293 2295 0.036388 ACGTACCCTCGTAGACCGAA 60.036 55.000 0.00 0.00 46.75 4.30
2294 2296 1.086696 CGTACCCTCGTAGACCGAAA 58.913 55.000 0.00 0.00 46.75 3.46
2295 2297 1.063174 CGTACCCTCGTAGACCGAAAG 59.937 57.143 0.00 0.00 46.75 2.62
2296 2298 1.098050 TACCCTCGTAGACCGAAAGC 58.902 55.000 0.00 0.00 46.75 3.51
2297 2299 1.226603 CCCTCGTAGACCGAAAGCG 60.227 63.158 0.00 0.00 46.75 4.68
2314 2316 1.489824 CGGAAGCGTTACCACAACG 59.510 57.895 5.22 5.22 45.56 4.10
2319 2321 3.321967 CGTTACCACAACGCGGTT 58.678 55.556 12.47 0.00 37.99 4.44
2321 2323 1.489070 CGTTACCACAACGCGGTTGA 61.489 55.000 22.26 3.38 45.28 3.18
2322 2324 0.869730 GTTACCACAACGCGGTTGAT 59.130 50.000 22.26 12.50 45.28 2.57
2323 2325 0.869068 TTACCACAACGCGGTTGATG 59.131 50.000 22.26 16.62 45.28 3.07
2324 2326 0.249953 TACCACAACGCGGTTGATGT 60.250 50.000 22.26 19.12 45.28 3.06
2325 2327 0.249953 ACCACAACGCGGTTGATGTA 60.250 50.000 22.26 0.00 45.28 2.29
2326 2328 0.442310 CCACAACGCGGTTGATGTAG 59.558 55.000 22.26 1.41 45.28 2.74
2327 2329 1.144969 CACAACGCGGTTGATGTAGT 58.855 50.000 22.26 2.04 45.28 2.73
2328 2330 1.126113 CACAACGCGGTTGATGTAGTC 59.874 52.381 22.26 0.00 45.28 2.59
2329 2331 0.365523 CAACGCGGTTGATGTAGTCG 59.634 55.000 12.47 0.00 45.28 4.18
2330 2332 0.038892 AACGCGGTTGATGTAGTCGT 60.039 50.000 12.47 0.00 0.00 4.34
2331 2333 0.804364 ACGCGGTTGATGTAGTCGTA 59.196 50.000 12.47 0.00 0.00 3.43
2332 2334 1.186030 CGCGGTTGATGTAGTCGTAC 58.814 55.000 0.00 0.00 0.00 3.67
2333 2335 1.186030 GCGGTTGATGTAGTCGTACG 58.814 55.000 9.53 9.53 30.95 3.67
2334 2336 1.466360 GCGGTTGATGTAGTCGTACGT 60.466 52.381 16.05 0.00 30.95 3.57
2335 2337 2.434761 CGGTTGATGTAGTCGTACGTC 58.565 52.381 16.05 10.06 43.16 4.34
2336 2338 2.094894 CGGTTGATGTAGTCGTACGTCT 59.905 50.000 18.54 18.54 43.23 4.18
2337 2339 3.425359 CGGTTGATGTAGTCGTACGTCTT 60.425 47.826 19.61 2.66 43.23 3.01
2338 2340 4.094212 GGTTGATGTAGTCGTACGTCTTC 58.906 47.826 19.61 15.02 43.23 2.87
2339 2341 4.378770 GGTTGATGTAGTCGTACGTCTTCA 60.379 45.833 19.61 19.79 43.23 3.02
2340 2342 5.330295 GTTGATGTAGTCGTACGTCTTCAT 58.670 41.667 25.67 25.67 43.23 2.57
2341 2343 4.905269 TGATGTAGTCGTACGTCTTCATG 58.095 43.478 28.66 0.00 43.23 3.07
2342 2344 4.632688 TGATGTAGTCGTACGTCTTCATGA 59.367 41.667 28.66 21.70 43.23 3.07
2343 2345 5.296035 TGATGTAGTCGTACGTCTTCATGAT 59.704 40.000 28.66 13.77 43.23 2.45
2344 2346 5.152923 TGTAGTCGTACGTCTTCATGATC 57.847 43.478 19.61 4.30 30.95 2.92
2345 2347 3.694535 AGTCGTACGTCTTCATGATCC 57.305 47.619 16.05 0.00 0.00 3.36
2346 2348 2.031807 AGTCGTACGTCTTCATGATCCG 59.968 50.000 16.05 1.79 0.00 4.18
2347 2349 2.031314 GTCGTACGTCTTCATGATCCGA 59.969 50.000 16.05 1.87 0.00 4.55
2348 2350 2.031314 TCGTACGTCTTCATGATCCGAC 59.969 50.000 16.05 11.45 0.00 4.79
2349 2351 2.728922 GTACGTCTTCATGATCCGACC 58.271 52.381 13.88 3.08 0.00 4.79
2350 2352 0.100682 ACGTCTTCATGATCCGACCG 59.899 55.000 13.88 10.96 0.00 4.79
2351 2353 0.380733 CGTCTTCATGATCCGACCGA 59.619 55.000 0.00 0.00 0.00 4.69
2352 2354 1.001268 CGTCTTCATGATCCGACCGAT 60.001 52.381 0.00 0.00 0.00 4.18
2353 2355 2.667137 GTCTTCATGATCCGACCGATC 58.333 52.381 0.00 0.00 46.70 3.69
2360 2362 2.418983 GATCCGACCGATCAAGTACC 57.581 55.000 0.00 0.00 45.92 3.34
2361 2363 0.666913 ATCCGACCGATCAAGTACCG 59.333 55.000 0.00 0.00 0.00 4.02
2362 2364 0.392863 TCCGACCGATCAAGTACCGA 60.393 55.000 0.00 0.00 0.00 4.69
2363 2365 0.452987 CCGACCGATCAAGTACCGAA 59.547 55.000 0.00 0.00 0.00 4.30
2364 2366 1.542544 CGACCGATCAAGTACCGAAC 58.457 55.000 0.00 0.00 0.00 3.95
2365 2367 1.542544 GACCGATCAAGTACCGAACG 58.457 55.000 5.81 5.81 0.00 3.95
2366 2368 0.457337 ACCGATCAAGTACCGAACGC 60.457 55.000 6.95 0.00 0.00 4.84
2367 2369 0.457166 CCGATCAAGTACCGAACGCA 60.457 55.000 6.95 0.00 0.00 5.24
2368 2370 0.638746 CGATCAAGTACCGAACGCAC 59.361 55.000 0.00 0.00 0.00 5.34
2369 2371 0.638746 GATCAAGTACCGAACGCACG 59.361 55.000 0.00 0.00 0.00 5.34
2370 2372 0.241749 ATCAAGTACCGAACGCACGA 59.758 50.000 0.00 0.00 35.09 4.35
2371 2373 0.661187 TCAAGTACCGAACGCACGAC 60.661 55.000 0.00 0.00 35.09 4.34
2372 2374 0.935831 CAAGTACCGAACGCACGACA 60.936 55.000 0.00 0.00 35.09 4.35
2373 2375 0.936297 AAGTACCGAACGCACGACAC 60.936 55.000 0.00 1.68 35.09 3.67
2374 2376 2.050168 TACCGAACGCACGACACC 60.050 61.111 0.00 0.00 35.09 4.16
2375 2377 2.554636 TACCGAACGCACGACACCT 61.555 57.895 0.00 0.00 35.09 4.00
2376 2378 2.462255 TACCGAACGCACGACACCTC 62.462 60.000 0.00 0.00 35.09 3.85
2377 2379 3.103911 CGAACGCACGACACCTCC 61.104 66.667 0.00 0.00 35.09 4.30
2378 2380 3.103911 GAACGCACGACACCTCCG 61.104 66.667 0.00 0.00 0.00 4.63
2379 2381 3.547249 GAACGCACGACACCTCCGA 62.547 63.158 0.00 0.00 0.00 4.55
2380 2382 3.553437 AACGCACGACACCTCCGAG 62.553 63.158 0.00 0.00 0.00 4.63
2381 2383 4.039357 CGCACGACACCTCCGAGT 62.039 66.667 0.00 0.00 0.00 4.18
2382 2384 2.338984 GCACGACACCTCCGAGTT 59.661 61.111 0.00 0.00 0.00 3.01
2383 2385 1.300697 GCACGACACCTCCGAGTTT 60.301 57.895 0.00 0.00 0.00 2.66
2384 2386 0.038892 GCACGACACCTCCGAGTTTA 60.039 55.000 0.00 0.00 0.00 2.01
2385 2387 1.978542 CACGACACCTCCGAGTTTAG 58.021 55.000 0.00 0.00 0.00 1.85
2386 2388 0.243095 ACGACACCTCCGAGTTTAGC 59.757 55.000 0.00 0.00 0.00 3.09
2387 2389 0.242825 CGACACCTCCGAGTTTAGCA 59.757 55.000 0.00 0.00 0.00 3.49
2388 2390 1.711206 GACACCTCCGAGTTTAGCAC 58.289 55.000 0.00 0.00 0.00 4.40
2389 2391 1.000506 GACACCTCCGAGTTTAGCACA 59.999 52.381 0.00 0.00 0.00 4.57
2390 2392 1.270147 ACACCTCCGAGTTTAGCACAC 60.270 52.381 0.00 0.00 0.00 3.82
2391 2393 0.038526 ACCTCCGAGTTTAGCACACG 60.039 55.000 0.00 0.00 39.03 4.49
2392 2394 0.038526 CCTCCGAGTTTAGCACACGT 60.039 55.000 0.00 0.00 37.75 4.49
2393 2395 1.604693 CCTCCGAGTTTAGCACACGTT 60.605 52.381 0.00 0.00 37.75 3.99
2394 2396 1.719780 CTCCGAGTTTAGCACACGTTC 59.280 52.381 0.00 0.00 37.75 3.95
2395 2397 1.067364 TCCGAGTTTAGCACACGTTCA 59.933 47.619 0.00 0.00 37.75 3.18
2396 2398 1.455786 CCGAGTTTAGCACACGTTCAG 59.544 52.381 0.00 0.00 37.75 3.02
2397 2399 1.136611 CGAGTTTAGCACACGTTCAGC 60.137 52.381 0.00 0.00 35.01 4.26
2398 2400 1.194772 GAGTTTAGCACACGTTCAGCC 59.805 52.381 0.00 0.00 0.00 4.85
2399 2401 0.237498 GTTTAGCACACGTTCAGCCC 59.763 55.000 0.00 0.00 0.00 5.19
2400 2402 1.225376 TTTAGCACACGTTCAGCCCG 61.225 55.000 0.00 0.00 0.00 6.13
2401 2403 2.089887 TTAGCACACGTTCAGCCCGA 62.090 55.000 0.00 0.00 0.00 5.14
2402 2404 1.884075 TAGCACACGTTCAGCCCGAT 61.884 55.000 0.00 0.00 0.00 4.18
2403 2405 3.027170 GCACACGTTCAGCCCGATG 62.027 63.158 0.00 0.00 0.00 3.84
2404 2406 1.374125 CACACGTTCAGCCCGATGA 60.374 57.895 0.00 0.00 0.00 2.92
2405 2407 1.374252 ACACGTTCAGCCCGATGAC 60.374 57.895 0.00 0.00 0.00 3.06
2406 2408 2.126071 ACGTTCAGCCCGATGACG 60.126 61.111 0.00 0.00 39.43 4.35
2407 2409 2.126071 CGTTCAGCCCGATGACGT 60.126 61.111 0.00 0.00 37.88 4.34
2408 2410 2.158959 CGTTCAGCCCGATGACGTC 61.159 63.158 9.11 9.11 37.88 4.34
2409 2411 1.810030 GTTCAGCCCGATGACGTCC 60.810 63.158 14.12 0.00 37.88 4.79
2410 2412 3.014085 TTCAGCCCGATGACGTCCC 62.014 63.158 14.12 3.95 37.88 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.346395 TCTTTAGCAACTCGAGCCCAA 59.654 47.619 13.61 0.00 0.00 4.12
146 147 5.537674 GCTCCATTACCATCCAGAAAATCAT 59.462 40.000 0.00 0.00 0.00 2.45
184 186 5.699458 TCGACCAAAAATGTTCTCTTAGTCC 59.301 40.000 0.00 0.00 0.00 3.85
219 221 6.183360 GCGAGGTGCATATCCTTAGTATATGA 60.183 42.308 8.67 0.00 45.45 2.15
249 251 0.317770 CAACAAAATCGGTGCGCTGT 60.318 50.000 9.73 0.00 0.00 4.40
275 277 4.080243 TGAACAACCCACTTTTCTCTGGTA 60.080 41.667 0.00 0.00 0.00 3.25
360 362 4.820775 TCCCATTAGGAGCAGAACTAGAT 58.179 43.478 0.00 0.00 40.93 1.98
458 460 1.971505 CTGCGTTGGGAGGGCATCTA 61.972 60.000 0.00 0.00 35.91 1.98
510 512 2.978010 CACAAGGGGCACGTGGAC 60.978 66.667 18.88 0.44 32.45 4.02
708 710 4.452114 TGCCATATACGTCAGCAAATCATC 59.548 41.667 0.00 0.00 0.00 2.92
720 722 0.177141 ACCGCAGTTGCCATATACGT 59.823 50.000 0.00 0.00 37.91 3.57
771 773 4.992319 AGAAATTCGACCGTAACATGAACA 59.008 37.500 0.00 0.00 0.00 3.18
816 818 1.206371 GAGAACCGGCCAGCTAACTTA 59.794 52.381 0.00 0.00 0.00 2.24
889 891 1.374252 GAGGCGCCGTCTTCTCAAA 60.374 57.895 23.20 0.00 0.00 2.69
951 953 1.520666 GAACGACCCATCCACGGAT 59.479 57.895 0.00 0.00 34.81 4.18
1227 1229 8.778059 TCCCTATTACACATTAACTCCTTGATT 58.222 33.333 0.00 0.00 0.00 2.57
1440 1442 8.309656 ACAAGTACTTCTGGTAAATGGTAGTAC 58.690 37.037 4.77 0.00 37.70 2.73
1441 1443 8.426569 ACAAGTACTTCTGGTAAATGGTAGTA 57.573 34.615 4.77 0.00 31.56 1.82
1442 1444 7.312415 ACAAGTACTTCTGGTAAATGGTAGT 57.688 36.000 4.77 0.00 31.56 2.73
1443 1445 9.530633 GATACAAGTACTTCTGGTAAATGGTAG 57.469 37.037 4.77 0.00 36.32 3.18
1444 1446 9.263446 AGATACAAGTACTTCTGGTAAATGGTA 57.737 33.333 4.77 1.59 36.32 3.25
1445 1447 8.041323 CAGATACAAGTACTTCTGGTAAATGGT 58.959 37.037 4.77 0.00 36.32 3.55
1446 1448 7.495934 CCAGATACAAGTACTTCTGGTAAATGG 59.504 40.741 24.48 19.80 46.64 3.16
1447 1449 8.425577 CCAGATACAAGTACTTCTGGTAAATG 57.574 38.462 24.48 16.52 46.64 2.32
1454 1456 6.405286 CCTCTCACCAGATACAAGTACTTCTG 60.405 46.154 4.77 10.06 36.26 3.02
1455 1457 5.654650 CCTCTCACCAGATACAAGTACTTCT 59.345 44.000 4.77 0.00 0.00 2.85
1456 1458 5.652891 TCCTCTCACCAGATACAAGTACTTC 59.347 44.000 4.77 0.00 0.00 3.01
1457 1459 5.580998 TCCTCTCACCAGATACAAGTACTT 58.419 41.667 1.12 1.12 0.00 2.24
1458 1460 5.194473 TCCTCTCACCAGATACAAGTACT 57.806 43.478 0.00 0.00 0.00 2.73
1459 1461 5.419471 ACTTCCTCTCACCAGATACAAGTAC 59.581 44.000 0.00 0.00 0.00 2.73
1460 1462 5.580998 ACTTCCTCTCACCAGATACAAGTA 58.419 41.667 0.00 0.00 0.00 2.24
1461 1463 4.421131 ACTTCCTCTCACCAGATACAAGT 58.579 43.478 0.00 0.00 0.00 3.16
1462 1464 6.531503 TTACTTCCTCTCACCAGATACAAG 57.468 41.667 0.00 0.00 0.00 3.16
1463 1465 7.496346 AATTACTTCCTCTCACCAGATACAA 57.504 36.000 0.00 0.00 0.00 2.41
1464 1466 8.783660 ATAATTACTTCCTCTCACCAGATACA 57.216 34.615 0.00 0.00 0.00 2.29
1500 1502 7.287466 TGGAGAAAGTGATGGAAATCAGAAAAA 59.713 33.333 0.00 0.00 0.00 1.94
1501 1503 6.777091 TGGAGAAAGTGATGGAAATCAGAAAA 59.223 34.615 0.00 0.00 0.00 2.29
1502 1504 6.207417 GTGGAGAAAGTGATGGAAATCAGAAA 59.793 38.462 0.00 0.00 0.00 2.52
1503 1505 5.707298 GTGGAGAAAGTGATGGAAATCAGAA 59.293 40.000 0.00 0.00 0.00 3.02
1504 1506 5.013495 AGTGGAGAAAGTGATGGAAATCAGA 59.987 40.000 0.00 0.00 0.00 3.27
1505 1507 5.251764 AGTGGAGAAAGTGATGGAAATCAG 58.748 41.667 0.00 0.00 0.00 2.90
1506 1508 5.246981 AGTGGAGAAAGTGATGGAAATCA 57.753 39.130 0.00 0.00 0.00 2.57
1507 1509 5.707298 TCAAGTGGAGAAAGTGATGGAAATC 59.293 40.000 0.00 0.00 0.00 2.17
1508 1510 5.634118 TCAAGTGGAGAAAGTGATGGAAAT 58.366 37.500 0.00 0.00 0.00 2.17
1509 1511 5.047566 TCAAGTGGAGAAAGTGATGGAAA 57.952 39.130 0.00 0.00 0.00 3.13
1510 1512 4.705110 TCAAGTGGAGAAAGTGATGGAA 57.295 40.909 0.00 0.00 0.00 3.53
1511 1513 4.582869 CATCAAGTGGAGAAAGTGATGGA 58.417 43.478 4.41 0.00 41.12 3.41
1512 1514 3.128242 GCATCAAGTGGAGAAAGTGATGG 59.872 47.826 12.44 0.00 43.69 3.51
1513 1515 4.008330 AGCATCAAGTGGAGAAAGTGATG 58.992 43.478 7.43 7.43 45.40 3.07
1514 1516 4.298103 AGCATCAAGTGGAGAAAGTGAT 57.702 40.909 0.00 0.00 0.00 3.06
1515 1517 3.777106 AGCATCAAGTGGAGAAAGTGA 57.223 42.857 0.00 0.00 0.00 3.41
1516 1518 3.190118 GGAAGCATCAAGTGGAGAAAGTG 59.810 47.826 0.00 0.00 0.00 3.16
1517 1519 3.416156 GGAAGCATCAAGTGGAGAAAGT 58.584 45.455 0.00 0.00 0.00 2.66
1518 1520 2.751806 GGGAAGCATCAAGTGGAGAAAG 59.248 50.000 0.00 0.00 0.00 2.62
1519 1521 2.376518 AGGGAAGCATCAAGTGGAGAAA 59.623 45.455 0.00 0.00 0.00 2.52
1520 1522 1.988107 AGGGAAGCATCAAGTGGAGAA 59.012 47.619 0.00 0.00 0.00 2.87
1521 1523 1.280133 CAGGGAAGCATCAAGTGGAGA 59.720 52.381 0.00 0.00 0.00 3.71
1522 1524 1.004044 ACAGGGAAGCATCAAGTGGAG 59.996 52.381 0.00 0.00 0.00 3.86
1523 1525 1.067295 ACAGGGAAGCATCAAGTGGA 58.933 50.000 0.00 0.00 0.00 4.02
1524 1526 2.787473 TACAGGGAAGCATCAAGTGG 57.213 50.000 0.00 0.00 0.00 4.00
1525 1527 4.326826 TCTTTACAGGGAAGCATCAAGTG 58.673 43.478 0.00 0.00 0.00 3.16
1526 1528 4.583871 CTCTTTACAGGGAAGCATCAAGT 58.416 43.478 0.00 0.00 0.00 3.16
1527 1529 3.376546 GCTCTTTACAGGGAAGCATCAAG 59.623 47.826 0.00 0.00 0.00 3.02
1528 1530 3.244875 TGCTCTTTACAGGGAAGCATCAA 60.245 43.478 0.00 0.00 0.00 2.57
1529 1531 2.305635 TGCTCTTTACAGGGAAGCATCA 59.694 45.455 0.00 0.00 0.00 3.07
1530 1532 2.991250 TGCTCTTTACAGGGAAGCATC 58.009 47.619 0.00 0.00 0.00 3.91
1531 1533 3.084786 GTTGCTCTTTACAGGGAAGCAT 58.915 45.455 0.00 0.00 0.00 3.79
1532 1534 2.158682 TGTTGCTCTTTACAGGGAAGCA 60.159 45.455 0.00 0.00 0.00 3.91
1533 1535 2.504367 TGTTGCTCTTTACAGGGAAGC 58.496 47.619 0.00 0.00 0.00 3.86
1534 1536 4.520492 ACAATGTTGCTCTTTACAGGGAAG 59.480 41.667 0.00 0.00 0.00 3.46
1535 1537 4.469657 ACAATGTTGCTCTTTACAGGGAA 58.530 39.130 0.00 0.00 0.00 3.97
1536 1538 4.098914 ACAATGTTGCTCTTTACAGGGA 57.901 40.909 0.00 0.00 0.00 4.20
1537 1539 7.807977 ATATACAATGTTGCTCTTTACAGGG 57.192 36.000 0.00 0.00 0.00 4.45
1573 1575 2.099921 ACGCACACAAGTGGCATAAAAA 59.900 40.909 5.08 0.00 45.98 1.94
1574 1576 1.678627 ACGCACACAAGTGGCATAAAA 59.321 42.857 5.08 0.00 45.98 1.52
1575 1577 1.265635 GACGCACACAAGTGGCATAAA 59.734 47.619 5.08 0.00 45.98 1.40
1576 1578 0.871722 GACGCACACAAGTGGCATAA 59.128 50.000 5.08 0.00 45.98 1.90
1577 1579 0.250081 TGACGCACACAAGTGGCATA 60.250 50.000 5.08 0.00 45.98 3.14
1578 1580 1.100463 TTGACGCACACAAGTGGCAT 61.100 50.000 5.08 0.00 45.98 4.40
1579 1581 1.713937 CTTGACGCACACAAGTGGCA 61.714 55.000 5.08 0.00 45.98 4.92
1580 1582 1.009675 CTTGACGCACACAAGTGGC 60.010 57.895 5.08 4.64 45.98 5.01
1584 1586 4.983215 TGTATAACTTGACGCACACAAG 57.017 40.909 11.27 11.27 46.69 3.16
1585 1587 8.880878 ATATATGTATAACTTGACGCACACAA 57.119 30.769 0.00 0.00 0.00 3.33
1586 1588 7.597369 GGATATATGTATAACTTGACGCACACA 59.403 37.037 0.00 0.00 0.00 3.72
1587 1589 7.597369 TGGATATATGTATAACTTGACGCACAC 59.403 37.037 0.00 0.00 0.00 3.82
1588 1590 7.662897 TGGATATATGTATAACTTGACGCACA 58.337 34.615 0.00 0.00 0.00 4.57
1589 1591 8.528917 TTGGATATATGTATAACTTGACGCAC 57.471 34.615 0.00 0.00 0.00 5.34
1603 1605 8.845227 TGCGTCACAAATTTATTGGATATATGT 58.155 29.630 0.00 0.00 0.00 2.29
1604 1606 9.676195 TTGCGTCACAAATTTATTGGATATATG 57.324 29.630 0.00 0.00 34.56 1.78
1607 1609 9.598517 AAATTGCGTCACAAATTTATTGGATAT 57.401 25.926 0.00 0.00 42.86 1.63
1608 1610 8.994429 AAATTGCGTCACAAATTTATTGGATA 57.006 26.923 0.00 0.00 42.86 2.59
1609 1611 7.064490 GGAAATTGCGTCACAAATTTATTGGAT 59.936 33.333 0.00 0.00 42.86 3.41
1610 1612 6.367422 GGAAATTGCGTCACAAATTTATTGGA 59.633 34.615 0.00 0.00 42.86 3.53
1611 1613 6.146837 TGGAAATTGCGTCACAAATTTATTGG 59.853 34.615 0.00 0.00 42.86 3.16
1612 1614 7.008859 GTGGAAATTGCGTCACAAATTTATTG 58.991 34.615 0.00 0.00 42.86 1.90
1613 1615 6.703607 TGTGGAAATTGCGTCACAAATTTATT 59.296 30.769 0.00 0.00 42.86 1.40
1614 1616 6.219473 TGTGGAAATTGCGTCACAAATTTAT 58.781 32.000 0.00 0.00 42.86 1.40
1615 1617 5.592054 TGTGGAAATTGCGTCACAAATTTA 58.408 33.333 0.00 0.00 42.86 1.40
1616 1618 4.437239 TGTGGAAATTGCGTCACAAATTT 58.563 34.783 0.00 0.00 42.86 1.82
1617 1619 4.052159 TGTGGAAATTGCGTCACAAATT 57.948 36.364 0.00 0.00 42.86 1.82
1618 1620 3.724508 TGTGGAAATTGCGTCACAAAT 57.275 38.095 0.00 0.00 42.86 2.32
1619 1621 3.067320 TGATGTGGAAATTGCGTCACAAA 59.933 39.130 0.26 0.00 42.86 2.83
1620 1622 2.620585 TGATGTGGAAATTGCGTCACAA 59.379 40.909 0.26 0.00 42.35 3.33
1621 1623 2.225467 TGATGTGGAAATTGCGTCACA 58.775 42.857 0.00 0.00 43.07 3.58
1622 1624 2.987413 TGATGTGGAAATTGCGTCAC 57.013 45.000 0.00 0.00 0.00 3.67
1623 1625 3.080319 TCATGATGTGGAAATTGCGTCA 58.920 40.909 0.00 0.00 33.42 4.35
1624 1626 3.763097 TCATGATGTGGAAATTGCGTC 57.237 42.857 0.00 0.00 0.00 5.19
1625 1627 3.507233 AGTTCATGATGTGGAAATTGCGT 59.493 39.130 0.00 0.00 0.00 5.24
1626 1628 4.100707 AGTTCATGATGTGGAAATTGCG 57.899 40.909 0.00 0.00 0.00 4.85
1627 1629 5.357878 TCCTAGTTCATGATGTGGAAATTGC 59.642 40.000 0.00 0.00 0.00 3.56
1628 1630 6.183360 GGTCCTAGTTCATGATGTGGAAATTG 60.183 42.308 0.00 0.00 0.00 2.32
1629 1631 5.888161 GGTCCTAGTTCATGATGTGGAAATT 59.112 40.000 0.00 0.00 0.00 1.82
1630 1632 5.440610 GGTCCTAGTTCATGATGTGGAAAT 58.559 41.667 0.00 0.00 0.00 2.17
1631 1633 4.324254 GGGTCCTAGTTCATGATGTGGAAA 60.324 45.833 0.00 0.00 0.00 3.13
1632 1634 3.199946 GGGTCCTAGTTCATGATGTGGAA 59.800 47.826 0.00 0.00 0.00 3.53
1633 1635 2.771943 GGGTCCTAGTTCATGATGTGGA 59.228 50.000 0.00 0.00 0.00 4.02
1634 1636 2.774234 AGGGTCCTAGTTCATGATGTGG 59.226 50.000 0.00 0.00 0.00 4.17
1635 1637 4.080919 TGAAGGGTCCTAGTTCATGATGTG 60.081 45.833 0.00 0.00 0.00 3.21
1636 1638 4.104086 TGAAGGGTCCTAGTTCATGATGT 58.896 43.478 0.00 0.00 0.00 3.06
1637 1639 4.760530 TGAAGGGTCCTAGTTCATGATG 57.239 45.455 0.00 0.00 0.00 3.07
1641 1643 7.256835 GGAATATCATGAAGGGTCCTAGTTCAT 60.257 40.741 0.00 8.17 40.73 2.57
1642 1644 6.043243 GGAATATCATGAAGGGTCCTAGTTCA 59.957 42.308 0.00 4.87 34.79 3.18
1643 1645 6.043243 TGGAATATCATGAAGGGTCCTAGTTC 59.957 42.308 0.00 0.00 0.00 3.01
1644 1646 5.911178 TGGAATATCATGAAGGGTCCTAGTT 59.089 40.000 0.00 0.00 0.00 2.24
1645 1647 5.476983 TGGAATATCATGAAGGGTCCTAGT 58.523 41.667 0.00 0.00 0.00 2.57
1646 1648 5.782331 TCTGGAATATCATGAAGGGTCCTAG 59.218 44.000 0.00 5.61 0.00 3.02
1647 1649 5.726560 TCTGGAATATCATGAAGGGTCCTA 58.273 41.667 0.00 0.00 0.00 2.94
1648 1650 4.570926 TCTGGAATATCATGAAGGGTCCT 58.429 43.478 0.00 0.00 0.00 3.85
1649 1651 4.982241 TCTGGAATATCATGAAGGGTCC 57.018 45.455 0.00 5.35 0.00 4.46
1650 1652 6.537355 TGAATCTGGAATATCATGAAGGGTC 58.463 40.000 0.00 0.00 0.00 4.46
1651 1653 6.520021 TGAATCTGGAATATCATGAAGGGT 57.480 37.500 0.00 0.00 0.00 4.34
1652 1654 9.696572 ATAATGAATCTGGAATATCATGAAGGG 57.303 33.333 0.00 0.00 33.06 3.95
1656 1658 8.953313 GCACATAATGAATCTGGAATATCATGA 58.047 33.333 0.00 0.00 33.06 3.07
1657 1659 8.736244 TGCACATAATGAATCTGGAATATCATG 58.264 33.333 0.00 0.00 33.06 3.07
1658 1660 8.873186 TGCACATAATGAATCTGGAATATCAT 57.127 30.769 0.00 0.00 34.11 2.45
1659 1661 8.694581 TTGCACATAATGAATCTGGAATATCA 57.305 30.769 0.00 0.00 0.00 2.15
1660 1662 9.006839 TCTTGCACATAATGAATCTGGAATATC 57.993 33.333 0.00 0.00 0.00 1.63
1661 1663 8.929260 TCTTGCACATAATGAATCTGGAATAT 57.071 30.769 0.00 0.00 0.00 1.28
1662 1664 7.994911 ACTCTTGCACATAATGAATCTGGAATA 59.005 33.333 0.00 0.00 0.00 1.75
1663 1665 6.832384 ACTCTTGCACATAATGAATCTGGAAT 59.168 34.615 0.00 0.00 0.00 3.01
1664 1666 6.182627 ACTCTTGCACATAATGAATCTGGAA 58.817 36.000 0.00 0.00 0.00 3.53
1668 1670 8.969260 TCAATACTCTTGCACATAATGAATCT 57.031 30.769 0.00 0.00 0.00 2.40
1707 1709 7.685849 AGCCTGTAATAAACTACCATTAGGA 57.314 36.000 0.00 0.00 38.69 2.94
1878 1880 2.104331 CCTCGCGGCGTAATCAGT 59.896 61.111 22.90 0.00 0.00 3.41
1879 1881 1.944676 GACCTCGCGGCGTAATCAG 60.945 63.158 22.90 11.55 0.00 2.90
1942 1944 4.106029 TCAATTCCTCGTCCTAGTTTCG 57.894 45.455 0.00 0.00 0.00 3.46
1949 1951 8.875168 AGATAGATTTAATCAATTCCTCGTCCT 58.125 33.333 7.74 0.00 0.00 3.85
2023 2025 7.201848 CCAAGCTATGAAATCCTCAAAAGCATA 60.202 37.037 12.30 0.00 44.14 3.14
2186 2188 2.279935 AATTACTGCGTTCCCCAACA 57.720 45.000 0.00 0.00 32.14 3.33
2187 2189 2.554893 TGAAATTACTGCGTTCCCCAAC 59.445 45.455 0.00 0.00 0.00 3.77
2188 2190 2.865079 TGAAATTACTGCGTTCCCCAA 58.135 42.857 0.00 0.00 0.00 4.12
2189 2191 2.570415 TGAAATTACTGCGTTCCCCA 57.430 45.000 0.00 0.00 0.00 4.96
2190 2192 3.926821 TTTGAAATTACTGCGTTCCCC 57.073 42.857 0.00 0.00 0.00 4.81
2209 2211 1.601914 GCGTGTGCGGAGGAAATTTTT 60.602 47.619 0.00 0.00 38.78 1.94
2210 2212 0.039527 GCGTGTGCGGAGGAAATTTT 60.040 50.000 0.00 0.00 38.78 1.82
2211 2213 1.579429 GCGTGTGCGGAGGAAATTT 59.421 52.632 0.00 0.00 38.78 1.82
2212 2214 3.263941 GCGTGTGCGGAGGAAATT 58.736 55.556 0.00 0.00 38.78 1.82
2222 2224 1.746615 ACCATGATCCTGCGTGTGC 60.747 57.895 0.00 0.00 43.20 4.57
2223 2225 0.391528 TCACCATGATCCTGCGTGTG 60.392 55.000 14.49 8.57 0.00 3.82
2224 2226 0.543277 ATCACCATGATCCTGCGTGT 59.457 50.000 14.49 0.00 29.59 4.49
2225 2227 0.942252 CATCACCATGATCCTGCGTG 59.058 55.000 0.00 10.98 34.28 5.34
2226 2228 0.816825 GCATCACCATGATCCTGCGT 60.817 55.000 0.00 0.00 34.28 5.24
2227 2229 0.816421 TGCATCACCATGATCCTGCG 60.816 55.000 0.00 0.00 34.28 5.18
2228 2230 1.617322 ATGCATCACCATGATCCTGC 58.383 50.000 0.00 0.00 34.28 4.85
2229 2231 2.747989 GCTATGCATCACCATGATCCTG 59.252 50.000 0.19 0.00 34.28 3.86
2230 2232 2.374170 TGCTATGCATCACCATGATCCT 59.626 45.455 0.19 0.00 34.28 3.24
2231 2233 2.786777 TGCTATGCATCACCATGATCC 58.213 47.619 0.19 0.00 34.28 3.36
2232 2234 3.364664 CGTTGCTATGCATCACCATGATC 60.365 47.826 0.19 0.00 38.76 2.92
2233 2235 2.551032 CGTTGCTATGCATCACCATGAT 59.449 45.455 0.19 0.00 38.76 2.45
2234 2236 1.941975 CGTTGCTATGCATCACCATGA 59.058 47.619 0.19 0.00 38.76 3.07
2235 2237 1.941975 TCGTTGCTATGCATCACCATG 59.058 47.619 0.19 0.00 38.76 3.66
2236 2238 2.158914 TCTCGTTGCTATGCATCACCAT 60.159 45.455 0.19 0.00 38.76 3.55
2237 2239 1.206849 TCTCGTTGCTATGCATCACCA 59.793 47.619 0.19 0.00 38.76 4.17
2238 2240 1.863454 CTCTCGTTGCTATGCATCACC 59.137 52.381 0.19 0.00 38.76 4.02
2239 2241 1.863454 CCTCTCGTTGCTATGCATCAC 59.137 52.381 0.19 0.00 38.76 3.06
2240 2242 1.202568 CCCTCTCGTTGCTATGCATCA 60.203 52.381 0.19 0.00 38.76 3.07
2241 2243 1.506493 CCCTCTCGTTGCTATGCATC 58.494 55.000 0.19 0.00 38.76 3.91
2242 2244 0.107456 CCCCTCTCGTTGCTATGCAT 59.893 55.000 3.79 3.79 38.76 3.96
2243 2245 0.975556 TCCCCTCTCGTTGCTATGCA 60.976 55.000 0.00 0.00 36.47 3.96
2244 2246 0.249657 CTCCCCTCTCGTTGCTATGC 60.250 60.000 0.00 0.00 0.00 3.14
2245 2247 1.339610 CTCTCCCCTCTCGTTGCTATG 59.660 57.143 0.00 0.00 0.00 2.23
2246 2248 1.063567 ACTCTCCCCTCTCGTTGCTAT 60.064 52.381 0.00 0.00 0.00 2.97
2247 2249 0.331954 ACTCTCCCCTCTCGTTGCTA 59.668 55.000 0.00 0.00 0.00 3.49
2248 2250 1.077625 ACTCTCCCCTCTCGTTGCT 59.922 57.895 0.00 0.00 0.00 3.91
2249 2251 1.216710 CACTCTCCCCTCTCGTTGC 59.783 63.158 0.00 0.00 0.00 4.17
2250 2252 0.969894 AACACTCTCCCCTCTCGTTG 59.030 55.000 0.00 0.00 0.00 4.10
2251 2253 0.969894 CAACACTCTCCCCTCTCGTT 59.030 55.000 0.00 0.00 0.00 3.85
2252 2254 0.178958 ACAACACTCTCCCCTCTCGT 60.179 55.000 0.00 0.00 0.00 4.18
2253 2255 0.528470 GACAACACTCTCCCCTCTCG 59.472 60.000 0.00 0.00 0.00 4.04
2254 2256 0.899019 GGACAACACTCTCCCCTCTC 59.101 60.000 0.00 0.00 0.00 3.20
2255 2257 0.191064 TGGACAACACTCTCCCCTCT 59.809 55.000 0.00 0.00 0.00 3.69
2256 2258 0.321996 GTGGACAACACTCTCCCCTC 59.678 60.000 0.00 0.00 46.72 4.30
2257 2259 2.453242 GTGGACAACACTCTCCCCT 58.547 57.895 0.00 0.00 46.72 4.79
2265 2267 0.665369 CGAGGGTACGTGGACAACAC 60.665 60.000 0.00 0.00 46.78 3.32
2266 2268 1.108727 ACGAGGGTACGTGGACAACA 61.109 55.000 0.00 0.00 44.84 3.33
2267 2269 0.881118 TACGAGGGTACGTGGACAAC 59.119 55.000 0.00 0.00 46.02 3.32
2268 2270 1.167851 CTACGAGGGTACGTGGACAA 58.832 55.000 0.00 0.00 44.98 3.18
2269 2271 0.324614 TCTACGAGGGTACGTGGACA 59.675 55.000 0.00 0.00 45.53 4.02
2270 2272 3.159298 TCTACGAGGGTACGTGGAC 57.841 57.895 0.00 0.00 45.53 4.02
2272 2274 2.101700 GGTCTACGAGGGTACGTGG 58.898 63.158 0.00 0.00 46.02 4.94
2290 2292 1.286354 TGGTAACGCTTCCGCTTTCG 61.286 55.000 0.00 0.00 42.51 3.46
2291 2293 0.165295 GTGGTAACGCTTCCGCTTTC 59.835 55.000 0.00 0.00 46.04 2.62
2292 2294 2.241171 GTGGTAACGCTTCCGCTTT 58.759 52.632 0.00 0.00 46.04 3.51
2293 2295 3.961729 GTGGTAACGCTTCCGCTT 58.038 55.556 0.00 0.00 46.04 4.68
2302 2304 1.083273 CAACCGCGTTGTGGTAACG 60.083 57.895 4.92 7.73 46.56 3.18
2303 2305 0.869730 ATCAACCGCGTTGTGGTAAC 59.130 50.000 16.97 0.00 46.56 2.50
2304 2306 0.869068 CATCAACCGCGTTGTGGTAA 59.131 50.000 16.97 0.00 46.56 2.85
2305 2307 0.249953 ACATCAACCGCGTTGTGGTA 60.250 50.000 16.97 3.28 46.56 3.25
2307 2309 0.442310 CTACATCAACCGCGTTGTGG 59.558 55.000 16.97 13.49 43.23 4.17
2308 2310 1.126113 GACTACATCAACCGCGTTGTG 59.874 52.381 16.97 15.92 43.23 3.33
2309 2311 1.425412 GACTACATCAACCGCGTTGT 58.575 50.000 16.97 9.99 43.23 3.32
2310 2312 0.365523 CGACTACATCAACCGCGTTG 59.634 55.000 4.92 10.14 43.99 4.10
2311 2313 0.038892 ACGACTACATCAACCGCGTT 60.039 50.000 4.92 0.00 0.00 4.84
2312 2314 0.804364 TACGACTACATCAACCGCGT 59.196 50.000 4.92 0.00 0.00 6.01
2313 2315 1.186030 GTACGACTACATCAACCGCG 58.814 55.000 0.00 0.00 0.00 6.46
2314 2316 1.186030 CGTACGACTACATCAACCGC 58.814 55.000 10.44 0.00 0.00 5.68
2315 2317 2.094894 AGACGTACGACTACATCAACCG 59.905 50.000 24.41 0.00 0.00 4.44
2316 2318 3.754188 AGACGTACGACTACATCAACC 57.246 47.619 24.41 0.00 0.00 3.77
2317 2319 4.715896 TGAAGACGTACGACTACATCAAC 58.284 43.478 24.41 6.55 0.00 3.18
2318 2320 5.122711 TCATGAAGACGTACGACTACATCAA 59.877 40.000 24.41 5.37 0.00 2.57
2319 2321 4.632688 TCATGAAGACGTACGACTACATCA 59.367 41.667 24.41 20.53 0.00 3.07
2320 2322 5.152923 TCATGAAGACGTACGACTACATC 57.847 43.478 24.41 15.62 0.00 3.06
2321 2323 5.277876 GGATCATGAAGACGTACGACTACAT 60.278 44.000 24.41 17.36 0.00 2.29
2322 2324 4.034858 GGATCATGAAGACGTACGACTACA 59.965 45.833 24.41 15.94 0.00 2.74
2323 2325 4.525686 GGATCATGAAGACGTACGACTAC 58.474 47.826 24.41 10.84 0.00 2.73
2324 2326 3.246936 CGGATCATGAAGACGTACGACTA 59.753 47.826 24.41 7.51 0.00 2.59
2325 2327 2.031807 CGGATCATGAAGACGTACGACT 59.968 50.000 24.41 19.11 0.00 4.18
2326 2328 2.031314 TCGGATCATGAAGACGTACGAC 59.969 50.000 24.41 16.77 0.00 4.34
2327 2329 2.031314 GTCGGATCATGAAGACGTACGA 59.969 50.000 24.41 0.00 0.00 3.43
2328 2330 2.373269 GTCGGATCATGAAGACGTACG 58.627 52.381 15.01 15.01 0.00 3.67
2329 2331 2.728922 GGTCGGATCATGAAGACGTAC 58.271 52.381 17.38 12.98 34.68 3.67
2330 2332 1.332686 CGGTCGGATCATGAAGACGTA 59.667 52.381 17.38 4.97 34.68 3.57
2331 2333 0.100682 CGGTCGGATCATGAAGACGT 59.899 55.000 17.38 0.00 34.68 4.34
2332 2334 0.380733 TCGGTCGGATCATGAAGACG 59.619 55.000 17.38 13.97 34.68 4.18
2333 2335 2.802787 ATCGGTCGGATCATGAAGAC 57.197 50.000 16.34 16.34 0.00 3.01
2342 2344 0.666913 CGGTACTTGATCGGTCGGAT 59.333 55.000 0.00 0.00 38.35 4.18
2343 2345 0.392863 TCGGTACTTGATCGGTCGGA 60.393 55.000 0.00 0.00 30.29 4.55
2344 2346 0.452987 TTCGGTACTTGATCGGTCGG 59.547 55.000 0.00 0.00 30.29 4.79
2345 2347 1.542544 GTTCGGTACTTGATCGGTCG 58.457 55.000 0.00 0.00 30.29 4.79
2346 2348 1.542544 CGTTCGGTACTTGATCGGTC 58.457 55.000 9.70 0.00 30.29 4.79
2347 2349 0.457337 GCGTTCGGTACTTGATCGGT 60.457 55.000 15.69 0.00 30.29 4.69
2348 2350 0.457166 TGCGTTCGGTACTTGATCGG 60.457 55.000 15.69 0.00 30.29 4.18
2349 2351 0.638746 GTGCGTTCGGTACTTGATCG 59.361 55.000 11.98 11.98 0.00 3.69
2350 2352 0.638746 CGTGCGTTCGGTACTTGATC 59.361 55.000 0.00 0.00 0.00 2.92
2351 2353 0.241749 TCGTGCGTTCGGTACTTGAT 59.758 50.000 0.00 0.00 0.00 2.57
2352 2354 0.661187 GTCGTGCGTTCGGTACTTGA 60.661 55.000 0.00 0.00 0.00 3.02
2353 2355 0.935831 TGTCGTGCGTTCGGTACTTG 60.936 55.000 0.00 0.00 0.00 3.16
2354 2356 0.936297 GTGTCGTGCGTTCGGTACTT 60.936 55.000 0.00 0.00 0.00 2.24
2355 2357 1.370900 GTGTCGTGCGTTCGGTACT 60.371 57.895 0.00 0.00 0.00 2.73
2356 2358 2.367344 GGTGTCGTGCGTTCGGTAC 61.367 63.158 2.16 0.00 0.00 3.34
2357 2359 2.050168 GGTGTCGTGCGTTCGGTA 60.050 61.111 2.16 0.00 0.00 4.02
2358 2360 3.836176 GAGGTGTCGTGCGTTCGGT 62.836 63.158 2.16 0.00 0.00 4.69
2359 2361 3.103911 GAGGTGTCGTGCGTTCGG 61.104 66.667 2.16 0.00 0.00 4.30
2360 2362 3.103911 GGAGGTGTCGTGCGTTCG 61.104 66.667 0.00 0.00 0.00 3.95
2361 2363 3.103911 CGGAGGTGTCGTGCGTTC 61.104 66.667 0.00 0.00 0.00 3.95
2362 2364 3.553437 CTCGGAGGTGTCGTGCGTT 62.553 63.158 0.00 0.00 34.93 4.84
2363 2365 4.039357 CTCGGAGGTGTCGTGCGT 62.039 66.667 0.00 0.00 34.93 5.24
2364 2366 3.553437 AACTCGGAGGTGTCGTGCG 62.553 63.158 10.23 0.00 34.68 5.34
2365 2367 0.038892 TAAACTCGGAGGTGTCGTGC 60.039 55.000 10.23 0.00 0.00 5.34
2366 2368 1.978542 CTAAACTCGGAGGTGTCGTG 58.021 55.000 10.23 0.00 0.00 4.35
2367 2369 0.243095 GCTAAACTCGGAGGTGTCGT 59.757 55.000 10.23 0.00 0.00 4.34
2368 2370 0.242825 TGCTAAACTCGGAGGTGTCG 59.757 55.000 10.23 0.00 0.00 4.35
2369 2371 1.000506 TGTGCTAAACTCGGAGGTGTC 59.999 52.381 10.23 0.00 0.00 3.67
2370 2372 1.045407 TGTGCTAAACTCGGAGGTGT 58.955 50.000 10.23 0.00 0.00 4.16
2371 2373 1.429463 GTGTGCTAAACTCGGAGGTG 58.571 55.000 10.23 0.00 0.00 4.00
2372 2374 0.038526 CGTGTGCTAAACTCGGAGGT 60.039 55.000 10.23 0.00 41.05 3.85
2373 2375 2.738147 CGTGTGCTAAACTCGGAGG 58.262 57.895 10.23 0.00 41.05 4.30
2378 2380 1.194772 GGCTGAACGTGTGCTAAACTC 59.805 52.381 0.00 0.00 0.00 3.01
2379 2381 1.226746 GGCTGAACGTGTGCTAAACT 58.773 50.000 0.00 0.00 0.00 2.66
2380 2382 0.237498 GGGCTGAACGTGTGCTAAAC 59.763 55.000 0.00 0.00 0.00 2.01
2381 2383 1.225376 CGGGCTGAACGTGTGCTAAA 61.225 55.000 0.00 0.00 0.00 1.85
2382 2384 1.666553 CGGGCTGAACGTGTGCTAA 60.667 57.895 0.00 0.00 0.00 3.09
2383 2385 1.884075 ATCGGGCTGAACGTGTGCTA 61.884 55.000 0.00 0.00 0.00 3.49
2384 2386 3.240134 ATCGGGCTGAACGTGTGCT 62.240 57.895 0.00 0.00 0.00 4.40
2385 2387 2.742372 ATCGGGCTGAACGTGTGC 60.742 61.111 0.00 0.00 0.00 4.57
2386 2388 1.374125 TCATCGGGCTGAACGTGTG 60.374 57.895 0.00 0.00 0.00 3.82
2387 2389 1.374252 GTCATCGGGCTGAACGTGT 60.374 57.895 0.00 0.00 0.00 4.49
2388 2390 2.444624 CGTCATCGGGCTGAACGTG 61.445 63.158 11.46 1.10 0.00 4.49
2389 2391 2.126071 CGTCATCGGGCTGAACGT 60.126 61.111 11.46 0.00 0.00 3.99
2390 2392 2.126071 ACGTCATCGGGCTGAACG 60.126 61.111 16.73 16.73 41.85 3.95
2391 2393 1.810030 GGACGTCATCGGGCTGAAC 60.810 63.158 18.91 0.00 41.85 3.18
2392 2394 2.577059 GGACGTCATCGGGCTGAA 59.423 61.111 18.91 0.00 41.85 3.02
2393 2395 3.458163 GGGACGTCATCGGGCTGA 61.458 66.667 18.91 0.00 41.85 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.