Multiple sequence alignment - TraesCS7D01G165100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G165100 chr7D 100.000 3830 0 0 1 3830 114816791 114820620 0.000000e+00 7073.0
1 TraesCS7D01G165100 chr7D 87.680 763 70 16 103 845 51795284 51794526 0.000000e+00 867.0
2 TraesCS7D01G165100 chr7D 86.867 731 65 13 2047 2750 114839893 114840619 0.000000e+00 789.0
3 TraesCS7D01G165100 chr7D 85.408 233 27 3 1819 2050 114828190 114828416 6.400000e-58 235.0
4 TraesCS7D01G165100 chr7D 93.431 137 9 0 1689 1825 114827773 114827909 1.800000e-48 204.0
5 TraesCS7D01G165100 chr7A 91.808 1709 89 18 1175 2863 119688681 119690358 0.000000e+00 2333.0
6 TraesCS7D01G165100 chr7A 92.809 1196 62 9 1549 2729 119588906 119590092 0.000000e+00 1711.0
7 TraesCS7D01G165100 chr7A 92.057 768 50 2 2727 3483 119591735 119592502 0.000000e+00 1070.0
8 TraesCS7D01G165100 chr7A 92.511 227 10 2 2848 3074 119690375 119690594 6.170000e-83 318.0
9 TraesCS7D01G165100 chr7A 76.014 296 50 18 2204 2486 118820504 118820791 2.400000e-27 134.0
10 TraesCS7D01G165100 chr7B 92.160 1403 91 8 1176 2577 74299742 74301126 0.000000e+00 1964.0
11 TraesCS7D01G165100 chr7B 94.223 1229 57 5 2615 3830 74339836 74341063 0.000000e+00 1864.0
12 TraesCS7D01G165100 chr7B 90.411 365 33 2 3072 3434 354379659 354379295 2.680000e-131 479.0
13 TraesCS7D01G165100 chr5D 87.355 862 79 22 1 844 47335144 47334295 0.000000e+00 961.0
14 TraesCS7D01G165100 chr5D 87.630 768 63 22 103 844 9105154 9104393 0.000000e+00 863.0
15 TraesCS7D01G165100 chr3A 86.552 870 81 20 1 846 740058848 740059705 0.000000e+00 926.0
16 TraesCS7D01G165100 chr3A 86.095 863 98 13 1 848 63828278 63827423 0.000000e+00 909.0
17 TraesCS7D01G165100 chr3A 88.219 365 36 4 3071 3432 527900382 527900742 2.730000e-116 429.0
18 TraesCS7D01G165100 chr3D 89.233 743 55 16 120 844 474545270 474546005 0.000000e+00 905.0
19 TraesCS7D01G165100 chr1D 87.927 762 62 19 103 844 450029904 450030655 0.000000e+00 870.0
20 TraesCS7D01G165100 chr1A 87.467 758 75 16 103 845 430240829 430241581 0.000000e+00 856.0
21 TraesCS7D01G165100 chr1A 80.243 658 96 20 1197 1850 551680568 551679941 7.490000e-127 464.0
22 TraesCS7D01G165100 chr1A 79.914 463 69 15 2108 2564 551679659 551679215 6.170000e-83 318.0
23 TraesCS7D01G165100 chr1A 74.136 897 170 39 1686 2545 551736684 551735813 7.990000e-82 315.0
24 TraesCS7D01G165100 chr1A 86.364 286 25 10 1241 1525 551736958 551736686 2.240000e-77 300.0
25 TraesCS7D01G165100 chr1A 86.207 58 6 2 3518 3574 23150930 23150986 1.150000e-05 62.1
26 TraesCS7D01G165100 chr6D 87.451 765 66 19 101 844 126427251 126428006 0.000000e+00 854.0
27 TraesCS7D01G165100 chr6D 76.364 550 88 24 1246 1790 288541794 288541282 1.370000e-64 257.0
28 TraesCS7D01G165100 chr1B 76.207 1408 245 51 1182 2549 632650946 632649589 0.000000e+00 662.0
29 TraesCS7D01G165100 chr1B 78.998 838 120 34 1182 2000 632634883 632634083 4.380000e-144 521.0
30 TraesCS7D01G165100 chr1B 79.368 475 79 15 2108 2577 632633957 632633497 2.220000e-82 316.0
31 TraesCS7D01G165100 chr4B 89.779 362 34 2 3071 3432 67770155 67770513 9.690000e-126 460.0
32 TraesCS7D01G165100 chr2B 89.227 362 30 9 3079 3432 748160660 748160300 9.760000e-121 444.0
33 TraesCS7D01G165100 chr2B 87.805 369 29 11 3071 3431 114326360 114326000 5.920000e-113 418.0
34 TraesCS7D01G165100 chr2D 88.187 364 39 2 3071 3432 634268656 634268295 7.600000e-117 431.0
35 TraesCS7D01G165100 chr2D 87.931 58 5 2 3518 3574 375580023 375580079 2.470000e-07 67.6
36 TraesCS7D01G165100 chr4A 87.705 366 40 3 3071 3431 686517756 686517391 4.570000e-114 422.0
37 TraesCS7D01G165100 chr4A 89.474 57 4 2 3518 3573 24872212 24872157 1.910000e-08 71.3
38 TraesCS7D01G165100 chr6A 76.723 537 81 31 1260 1790 437021250 437021748 3.800000e-65 259.0
39 TraesCS7D01G165100 chr6A 95.238 42 0 2 3519 3559 348317186 348317226 8.880000e-07 65.8
40 TraesCS7D01G165100 chr3B 89.604 202 17 2 3593 3790 232176097 232176298 1.770000e-63 254.0
41 TraesCS7D01G165100 chr3B 87.719 57 6 1 3518 3574 774776141 774776196 8.880000e-07 65.8
42 TraesCS7D01G165100 chr6B 76.044 551 88 27 1246 1790 448668255 448667743 2.960000e-61 246.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G165100 chr7D 114816791 114820620 3829 False 7073.0 7073 100.0000 1 3830 1 chr7D.!!$F1 3829
1 TraesCS7D01G165100 chr7D 51794526 51795284 758 True 867.0 867 87.6800 103 845 1 chr7D.!!$R1 742
2 TraesCS7D01G165100 chr7D 114839893 114840619 726 False 789.0 789 86.8670 2047 2750 1 chr7D.!!$F2 703
3 TraesCS7D01G165100 chr7D 114827773 114828416 643 False 219.5 235 89.4195 1689 2050 2 chr7D.!!$F3 361
4 TraesCS7D01G165100 chr7A 119588906 119592502 3596 False 1390.5 1711 92.4330 1549 3483 2 chr7A.!!$F2 1934
5 TraesCS7D01G165100 chr7A 119688681 119690594 1913 False 1325.5 2333 92.1595 1175 3074 2 chr7A.!!$F3 1899
6 TraesCS7D01G165100 chr7B 74299742 74301126 1384 False 1964.0 1964 92.1600 1176 2577 1 chr7B.!!$F1 1401
7 TraesCS7D01G165100 chr7B 74339836 74341063 1227 False 1864.0 1864 94.2230 2615 3830 1 chr7B.!!$F2 1215
8 TraesCS7D01G165100 chr5D 47334295 47335144 849 True 961.0 961 87.3550 1 844 1 chr5D.!!$R2 843
9 TraesCS7D01G165100 chr5D 9104393 9105154 761 True 863.0 863 87.6300 103 844 1 chr5D.!!$R1 741
10 TraesCS7D01G165100 chr3A 740058848 740059705 857 False 926.0 926 86.5520 1 846 1 chr3A.!!$F2 845
11 TraesCS7D01G165100 chr3A 63827423 63828278 855 True 909.0 909 86.0950 1 848 1 chr3A.!!$R1 847
12 TraesCS7D01G165100 chr3D 474545270 474546005 735 False 905.0 905 89.2330 120 844 1 chr3D.!!$F1 724
13 TraesCS7D01G165100 chr1D 450029904 450030655 751 False 870.0 870 87.9270 103 844 1 chr1D.!!$F1 741
14 TraesCS7D01G165100 chr1A 430240829 430241581 752 False 856.0 856 87.4670 103 845 1 chr1A.!!$F2 742
15 TraesCS7D01G165100 chr1A 551679215 551680568 1353 True 391.0 464 80.0785 1197 2564 2 chr1A.!!$R1 1367
16 TraesCS7D01G165100 chr1A 551735813 551736958 1145 True 307.5 315 80.2500 1241 2545 2 chr1A.!!$R2 1304
17 TraesCS7D01G165100 chr6D 126427251 126428006 755 False 854.0 854 87.4510 101 844 1 chr6D.!!$F1 743
18 TraesCS7D01G165100 chr6D 288541282 288541794 512 True 257.0 257 76.3640 1246 1790 1 chr6D.!!$R1 544
19 TraesCS7D01G165100 chr1B 632649589 632650946 1357 True 662.0 662 76.2070 1182 2549 1 chr1B.!!$R1 1367
20 TraesCS7D01G165100 chr1B 632633497 632634883 1386 True 418.5 521 79.1830 1182 2577 2 chr1B.!!$R2 1395
21 TraesCS7D01G165100 chr6B 448667743 448668255 512 True 246.0 246 76.0440 1246 1790 1 chr6B.!!$R1 544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
937 1004 0.108567 TAAATAGCTGTCGCGCACCA 60.109 50.0 8.75 1.29 42.32 4.17 F
1165 1232 0.033601 ACTGTGTTCAGGCCACCAAA 60.034 50.0 5.01 0.00 45.14 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2535 2972 0.893727 GGTGGCGTTTCCCAGACATT 60.894 55.0 0.0 0.0 35.05 2.71 R
3064 5207 0.608856 TACCTTACTCGGTCGTGCCA 60.609 55.0 0.0 0.0 38.49 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 4.802664 TTTTTCGACGTTTTGGTTTTCG 57.197 36.364 0.00 0.00 0.00 3.46
55 56 1.302271 GGTTTTCGCCCGGTCTTCT 60.302 57.895 0.00 0.00 0.00 2.85
65 66 2.557056 GCCCGGTCTTCTTTAGCTTTTT 59.443 45.455 0.00 0.00 0.00 1.94
183 198 2.561419 ACGGTTGTGCTTTAGCTAGAGA 59.439 45.455 15.20 0.00 42.66 3.10
187 202 4.307432 GTTGTGCTTTAGCTAGAGACACA 58.693 43.478 24.39 24.39 42.66 3.72
315 336 1.009389 CGACCGTGCCTCTCAGAAAC 61.009 60.000 0.00 0.00 0.00 2.78
318 339 2.383527 CGTGCCTCTCAGAAACGGC 61.384 63.158 0.00 0.00 42.78 5.68
391 425 0.736053 TTTCGCGAGGTTGTGCTTTT 59.264 45.000 9.59 0.00 0.00 2.27
394 429 4.515107 CGAGGTTGTGCTTTTCGC 57.485 55.556 0.00 0.00 39.77 4.70
665 729 0.828022 ACGCGAGGAATCCAATGGTA 59.172 50.000 15.93 0.00 0.00 3.25
745 812 5.163884 GGATCTACGAAAAAGGGAAAACTCG 60.164 44.000 0.00 0.00 0.00 4.18
814 881 3.954258 CTGGGAAAGTGGAGTGTTCTTTT 59.046 43.478 0.00 0.00 32.59 2.27
816 883 3.003378 GGGAAAGTGGAGTGTTCTTTTCG 59.997 47.826 0.00 0.00 32.59 3.46
833 900 6.549952 TCTTTTCGACGAGTACTCCTTAATC 58.450 40.000 17.23 6.51 0.00 1.75
848 915 3.877508 CCTTAATCAGTGATTTCGGGGTC 59.122 47.826 22.90 0.00 33.95 4.46
849 916 2.420058 AATCAGTGATTTCGGGGTCC 57.580 50.000 12.75 0.00 0.00 4.46
850 917 1.285280 ATCAGTGATTTCGGGGTCCA 58.715 50.000 0.00 0.00 0.00 4.02
851 918 1.285280 TCAGTGATTTCGGGGTCCAT 58.715 50.000 0.00 0.00 0.00 3.41
852 919 1.209504 TCAGTGATTTCGGGGTCCATC 59.790 52.381 0.00 0.00 0.00 3.51
853 920 0.546598 AGTGATTTCGGGGTCCATCC 59.453 55.000 0.00 0.00 0.00 3.51
862 929 3.771160 GGTCCATCCCTCGTGCGT 61.771 66.667 0.00 0.00 0.00 5.24
863 930 2.509336 GTCCATCCCTCGTGCGTG 60.509 66.667 0.00 0.00 0.00 5.34
864 931 4.451150 TCCATCCCTCGTGCGTGC 62.451 66.667 0.00 0.00 0.00 5.34
865 932 4.758251 CCATCCCTCGTGCGTGCA 62.758 66.667 0.00 0.00 0.00 4.57
866 933 3.490759 CATCCCTCGTGCGTGCAC 61.491 66.667 14.81 14.81 43.01 4.57
867 934 4.002506 ATCCCTCGTGCGTGCACA 62.003 61.111 23.26 10.54 46.47 4.57
868 935 3.315142 ATCCCTCGTGCGTGCACAT 62.315 57.895 23.26 7.28 46.47 3.21
869 936 1.955495 ATCCCTCGTGCGTGCACATA 61.955 55.000 23.26 10.67 46.47 2.29
870 937 1.521457 CCCTCGTGCGTGCACATAT 60.521 57.895 23.26 0.00 46.47 1.78
871 938 1.089481 CCCTCGTGCGTGCACATATT 61.089 55.000 23.26 0.00 46.47 1.28
872 939 0.726827 CCTCGTGCGTGCACATATTT 59.273 50.000 23.26 0.00 46.47 1.40
873 940 1.130373 CCTCGTGCGTGCACATATTTT 59.870 47.619 23.26 0.00 46.47 1.82
874 941 2.414029 CCTCGTGCGTGCACATATTTTT 60.414 45.455 23.26 0.00 46.47 1.94
875 942 3.181515 CCTCGTGCGTGCACATATTTTTA 60.182 43.478 23.26 0.00 46.47 1.52
876 943 4.399112 CTCGTGCGTGCACATATTTTTAA 58.601 39.130 23.26 0.00 46.47 1.52
877 944 4.152526 TCGTGCGTGCACATATTTTTAAC 58.847 39.130 23.26 0.30 46.47 2.01
878 945 4.083749 TCGTGCGTGCACATATTTTTAACT 60.084 37.500 23.26 0.00 46.47 2.24
879 946 4.259734 CGTGCGTGCACATATTTTTAACTC 59.740 41.667 23.26 0.00 46.47 3.01
880 947 4.259734 GTGCGTGCACATATTTTTAACTCG 59.740 41.667 19.45 0.00 45.53 4.18
881 948 3.237433 GCGTGCACATATTTTTAACTCGC 59.763 43.478 18.64 5.18 0.00 5.03
882 949 3.473550 CGTGCACATATTTTTAACTCGCG 59.526 43.478 18.64 0.00 0.00 5.87
883 950 3.237433 GTGCACATATTTTTAACTCGCGC 59.763 43.478 13.17 0.00 0.00 6.86
884 951 3.126171 TGCACATATTTTTAACTCGCGCT 59.874 39.130 5.56 0.00 0.00 5.92
885 952 4.095610 GCACATATTTTTAACTCGCGCTT 58.904 39.130 5.56 0.00 0.00 4.68
886 953 4.557301 GCACATATTTTTAACTCGCGCTTT 59.443 37.500 5.56 0.00 0.00 3.51
887 954 5.060446 GCACATATTTTTAACTCGCGCTTTT 59.940 36.000 5.56 0.00 0.00 2.27
888 955 6.673588 CACATATTTTTAACTCGCGCTTTTC 58.326 36.000 5.56 0.00 0.00 2.29
889 956 5.506832 ACATATTTTTAACTCGCGCTTTTCG 59.493 36.000 5.56 0.00 42.12 3.46
899 966 2.506881 GCTTTTCGCGCCATTGGG 60.507 61.111 0.00 0.00 37.18 4.12
915 982 3.443588 GGCCGGCCCAATAATGTC 58.556 61.111 36.64 5.01 0.00 3.06
916 983 2.551912 GGCCGGCCCAATAATGTCG 61.552 63.158 36.64 0.00 0.00 4.35
917 984 1.525077 GCCGGCCCAATAATGTCGA 60.525 57.895 18.11 0.00 0.00 4.20
918 985 0.889186 GCCGGCCCAATAATGTCGAT 60.889 55.000 18.11 0.00 0.00 3.59
919 986 1.609580 GCCGGCCCAATAATGTCGATA 60.610 52.381 18.11 0.00 0.00 2.92
920 987 2.773487 CCGGCCCAATAATGTCGATAA 58.227 47.619 0.00 0.00 0.00 1.75
921 988 3.142951 CCGGCCCAATAATGTCGATAAA 58.857 45.455 0.00 0.00 0.00 1.40
922 989 3.756434 CCGGCCCAATAATGTCGATAAAT 59.244 43.478 0.00 0.00 0.00 1.40
923 990 4.938832 CCGGCCCAATAATGTCGATAAATA 59.061 41.667 0.00 0.00 0.00 1.40
924 991 5.064707 CCGGCCCAATAATGTCGATAAATAG 59.935 44.000 0.00 0.00 0.00 1.73
925 992 5.447279 CGGCCCAATAATGTCGATAAATAGC 60.447 44.000 0.00 0.00 0.00 2.97
926 993 5.648092 GGCCCAATAATGTCGATAAATAGCT 59.352 40.000 0.00 0.00 0.00 3.32
927 994 6.403636 GGCCCAATAATGTCGATAAATAGCTG 60.404 42.308 0.00 0.00 0.00 4.24
928 995 6.149474 GCCCAATAATGTCGATAAATAGCTGT 59.851 38.462 0.00 0.00 0.00 4.40
929 996 7.624344 GCCCAATAATGTCGATAAATAGCTGTC 60.624 40.741 0.00 0.00 0.00 3.51
930 997 7.411912 CCCAATAATGTCGATAAATAGCTGTCG 60.412 40.741 0.00 0.00 35.55 4.35
931 998 4.974103 AATGTCGATAAATAGCTGTCGC 57.026 40.909 0.00 0.00 34.33 5.19
932 999 2.381589 TGTCGATAAATAGCTGTCGCG 58.618 47.619 0.00 0.00 42.32 5.87
933 1000 1.122680 GTCGATAAATAGCTGTCGCGC 59.877 52.381 0.00 0.00 42.32 6.86
934 1001 1.128513 CGATAAATAGCTGTCGCGCA 58.871 50.000 8.75 1.43 42.32 6.09
935 1002 1.136884 CGATAAATAGCTGTCGCGCAC 60.137 52.381 8.75 5.56 42.32 5.34
936 1003 1.192534 GATAAATAGCTGTCGCGCACC 59.807 52.381 8.75 0.00 42.32 5.01
937 1004 0.108567 TAAATAGCTGTCGCGCACCA 60.109 50.000 8.75 1.29 42.32 4.17
938 1005 0.953471 AAATAGCTGTCGCGCACCAA 60.953 50.000 8.75 0.00 42.32 3.67
939 1006 1.361668 AATAGCTGTCGCGCACCAAG 61.362 55.000 8.75 0.00 42.32 3.61
940 1007 2.507110 ATAGCTGTCGCGCACCAAGT 62.507 55.000 8.75 0.00 42.32 3.16
941 1008 4.077188 GCTGTCGCGCACCAAGTC 62.077 66.667 8.75 0.00 0.00 3.01
942 1009 3.414700 CTGTCGCGCACCAAGTCC 61.415 66.667 8.75 0.00 0.00 3.85
943 1010 4.228567 TGTCGCGCACCAAGTCCA 62.229 61.111 8.75 0.00 0.00 4.02
944 1011 3.712881 GTCGCGCACCAAGTCCAC 61.713 66.667 8.75 0.00 0.00 4.02
945 1012 4.980805 TCGCGCACCAAGTCCACC 62.981 66.667 8.75 0.00 0.00 4.61
947 1014 3.660111 GCGCACCAAGTCCACCAC 61.660 66.667 0.30 0.00 0.00 4.16
948 1015 2.111043 CGCACCAAGTCCACCACT 59.889 61.111 0.00 0.00 36.64 4.00
949 1016 2.253758 CGCACCAAGTCCACCACTG 61.254 63.158 0.00 0.00 34.56 3.66
950 1017 1.148273 GCACCAAGTCCACCACTGA 59.852 57.895 0.00 0.00 34.56 3.41
951 1018 0.886490 GCACCAAGTCCACCACTGAG 60.886 60.000 0.00 0.00 34.56 3.35
952 1019 0.758734 CACCAAGTCCACCACTGAGA 59.241 55.000 0.00 0.00 34.56 3.27
953 1020 1.349026 CACCAAGTCCACCACTGAGAT 59.651 52.381 0.00 0.00 34.56 2.75
954 1021 1.349026 ACCAAGTCCACCACTGAGATG 59.651 52.381 0.00 0.00 34.56 2.90
955 1022 1.349026 CCAAGTCCACCACTGAGATGT 59.651 52.381 0.00 0.00 34.56 3.06
956 1023 2.613977 CCAAGTCCACCACTGAGATGTC 60.614 54.545 0.00 0.00 34.56 3.06
957 1024 0.891373 AGTCCACCACTGAGATGTCG 59.109 55.000 0.00 0.00 32.26 4.35
958 1025 0.603569 GTCCACCACTGAGATGTCGT 59.396 55.000 0.00 0.00 0.00 4.34
959 1026 0.888619 TCCACCACTGAGATGTCGTC 59.111 55.000 0.00 0.00 0.00 4.20
960 1027 0.108615 CCACCACTGAGATGTCGTCC 60.109 60.000 0.00 0.00 0.00 4.79
961 1028 0.603065 CACCACTGAGATGTCGTCCA 59.397 55.000 0.00 0.00 0.00 4.02
962 1029 1.205655 CACCACTGAGATGTCGTCCAT 59.794 52.381 0.00 0.00 36.13 3.41
968 1035 2.815308 GATGTCGTCCATCGGGCT 59.185 61.111 2.87 0.00 40.60 5.19
969 1036 2.038690 GATGTCGTCCATCGGGCTA 58.961 57.895 2.87 0.00 40.60 3.93
970 1037 0.603569 GATGTCGTCCATCGGGCTAT 59.396 55.000 2.87 0.00 40.60 2.97
971 1038 0.603569 ATGTCGTCCATCGGGCTATC 59.396 55.000 0.00 0.00 40.32 2.08
972 1039 1.081376 GTCGTCCATCGGGCTATCG 60.081 63.158 0.00 0.00 40.32 2.92
973 1040 1.527611 TCGTCCATCGGGCTATCGT 60.528 57.895 0.00 0.00 40.32 3.73
974 1041 1.081376 CGTCCATCGGGCTATCGTC 60.081 63.158 0.00 0.00 35.71 4.20
975 1042 1.792118 CGTCCATCGGGCTATCGTCA 61.792 60.000 0.00 0.00 35.71 4.35
976 1043 0.318784 GTCCATCGGGCTATCGTCAC 60.319 60.000 0.00 0.00 0.00 3.67
977 1044 1.371758 CCATCGGGCTATCGTCACG 60.372 63.158 0.00 0.00 0.00 4.35
978 1045 1.652563 CATCGGGCTATCGTCACGA 59.347 57.895 0.28 0.28 41.13 4.35
979 1046 0.386100 CATCGGGCTATCGTCACGAG 60.386 60.000 5.89 0.00 39.91 4.18
980 1047 2.131294 ATCGGGCTATCGTCACGAGC 62.131 60.000 5.89 4.20 39.91 5.03
981 1048 2.353607 GGGCTATCGTCACGAGCG 60.354 66.667 5.89 0.00 39.91 5.03
982 1049 2.353607 GGCTATCGTCACGAGCGG 60.354 66.667 5.89 0.00 39.91 5.52
983 1050 3.025176 GCTATCGTCACGAGCGGC 61.025 66.667 5.89 6.06 39.91 6.53
984 1051 2.353607 CTATCGTCACGAGCGGCC 60.354 66.667 5.89 0.00 39.91 6.13
985 1052 2.827190 TATCGTCACGAGCGGCCT 60.827 61.111 5.89 0.00 39.91 5.19
986 1053 2.990674 CTATCGTCACGAGCGGCCTG 62.991 65.000 5.89 0.00 39.91 4.85
1000 1067 4.426313 CCTGGCCCGAAACCTCCC 62.426 72.222 0.00 0.00 0.00 4.30
1001 1068 4.778143 CTGGCCCGAAACCTCCCG 62.778 72.222 0.00 0.00 0.00 5.14
1003 1070 4.772687 GGCCCGAAACCTCCCGTC 62.773 72.222 0.00 0.00 0.00 4.79
1004 1071 4.772687 GCCCGAAACCTCCCGTCC 62.773 72.222 0.00 0.00 0.00 4.79
1005 1072 3.315949 CCCGAAACCTCCCGTCCA 61.316 66.667 0.00 0.00 0.00 4.02
1006 1073 2.666098 CCCGAAACCTCCCGTCCAT 61.666 63.158 0.00 0.00 0.00 3.41
1007 1074 1.153429 CCGAAACCTCCCGTCCATC 60.153 63.158 0.00 0.00 0.00 3.51
1008 1075 1.614241 CCGAAACCTCCCGTCCATCT 61.614 60.000 0.00 0.00 0.00 2.90
1009 1076 0.460284 CGAAACCTCCCGTCCATCTG 60.460 60.000 0.00 0.00 0.00 2.90
1010 1077 0.744771 GAAACCTCCCGTCCATCTGC 60.745 60.000 0.00 0.00 0.00 4.26
1011 1078 1.488705 AAACCTCCCGTCCATCTGCA 61.489 55.000 0.00 0.00 0.00 4.41
1012 1079 1.903877 AACCTCCCGTCCATCTGCAG 61.904 60.000 7.63 7.63 0.00 4.41
1013 1080 2.503061 CTCCCGTCCATCTGCAGG 59.497 66.667 15.13 0.00 0.00 4.85
1014 1081 3.746949 CTCCCGTCCATCTGCAGGC 62.747 68.421 15.13 0.00 0.00 4.85
1015 1082 4.864334 CCCGTCCATCTGCAGGCC 62.864 72.222 15.13 0.00 0.00 5.19
1016 1083 4.864334 CCGTCCATCTGCAGGCCC 62.864 72.222 15.13 0.00 0.00 5.80
1017 1084 4.100084 CGTCCATCTGCAGGCCCA 62.100 66.667 15.13 0.00 0.00 5.36
1018 1085 2.599597 GTCCATCTGCAGGCCCAT 59.400 61.111 15.13 0.00 0.00 4.00
1019 1086 1.527844 GTCCATCTGCAGGCCCATC 60.528 63.158 15.13 0.00 0.00 3.51
1020 1087 2.002407 TCCATCTGCAGGCCCATCA 61.002 57.895 15.13 0.00 0.00 3.07
1021 1088 1.826921 CCATCTGCAGGCCCATCAC 60.827 63.158 15.13 0.00 0.00 3.06
1022 1089 2.184830 CATCTGCAGGCCCATCACG 61.185 63.158 15.13 0.00 0.00 4.35
1023 1090 3.411114 ATCTGCAGGCCCATCACGG 62.411 63.158 15.13 0.00 0.00 4.94
1024 1091 4.415150 CTGCAGGCCCATCACGGT 62.415 66.667 5.57 0.00 0.00 4.83
1025 1092 4.408821 TGCAGGCCCATCACGGTC 62.409 66.667 0.00 0.00 0.00 4.79
1026 1093 4.408821 GCAGGCCCATCACGGTCA 62.409 66.667 0.00 0.00 0.00 4.02
1027 1094 2.436646 CAGGCCCATCACGGTCAC 60.437 66.667 0.00 0.00 0.00 3.67
1028 1095 2.927856 AGGCCCATCACGGTCACA 60.928 61.111 0.00 0.00 0.00 3.58
1029 1096 2.436646 GGCCCATCACGGTCACAG 60.437 66.667 0.00 0.00 0.00 3.66
1030 1097 2.347490 GCCCATCACGGTCACAGT 59.653 61.111 0.00 0.00 0.00 3.55
1031 1098 1.594833 GCCCATCACGGTCACAGTA 59.405 57.895 0.00 0.00 0.00 2.74
1032 1099 0.178068 GCCCATCACGGTCACAGTAT 59.822 55.000 0.00 0.00 0.00 2.12
1033 1100 1.939974 CCCATCACGGTCACAGTATG 58.060 55.000 0.00 0.00 46.00 2.39
1034 1101 1.480545 CCCATCACGGTCACAGTATGA 59.519 52.381 0.00 0.00 39.69 2.15
1045 1112 4.594123 TCACAGTATGACCAGAAAACGA 57.406 40.909 0.00 0.00 39.69 3.85
1046 1113 5.147330 TCACAGTATGACCAGAAAACGAT 57.853 39.130 0.00 0.00 39.69 3.73
1047 1114 5.547465 TCACAGTATGACCAGAAAACGATT 58.453 37.500 0.00 0.00 39.69 3.34
1048 1115 5.995282 TCACAGTATGACCAGAAAACGATTT 59.005 36.000 0.00 0.00 39.69 2.17
1049 1116 6.485313 TCACAGTATGACCAGAAAACGATTTT 59.515 34.615 0.00 0.00 39.69 1.82
1050 1117 6.578545 CACAGTATGACCAGAAAACGATTTTG 59.421 38.462 0.00 0.00 39.69 2.44
1051 1118 6.086222 CAGTATGACCAGAAAACGATTTTGG 58.914 40.000 13.72 13.72 39.69 3.28
1052 1119 3.363341 TGACCAGAAAACGATTTTGGC 57.637 42.857 14.64 10.35 33.58 4.52
1053 1120 2.690497 TGACCAGAAAACGATTTTGGCA 59.310 40.909 14.64 11.92 33.58 4.92
1054 1121 3.049912 GACCAGAAAACGATTTTGGCAC 58.950 45.455 14.64 8.83 33.58 5.01
1055 1122 2.428890 ACCAGAAAACGATTTTGGCACA 59.571 40.909 14.64 0.00 33.58 4.57
1056 1123 3.052036 CCAGAAAACGATTTTGGCACAG 58.948 45.455 0.00 0.00 42.39 3.66
1057 1124 3.243367 CCAGAAAACGATTTTGGCACAGA 60.243 43.478 0.00 0.00 42.39 3.41
1058 1125 4.549458 CAGAAAACGATTTTGGCACAGAT 58.451 39.130 0.00 0.00 42.39 2.90
1059 1126 4.618489 CAGAAAACGATTTTGGCACAGATC 59.382 41.667 0.00 0.00 42.39 2.75
1060 1127 4.520492 AGAAAACGATTTTGGCACAGATCT 59.480 37.500 0.00 0.00 42.39 2.75
1061 1128 3.837213 AACGATTTTGGCACAGATCTG 57.163 42.857 21.37 21.37 42.39 2.90
1062 1129 1.470098 ACGATTTTGGCACAGATCTGC 59.530 47.619 22.83 10.56 42.39 4.26
1063 1130 1.469703 CGATTTTGGCACAGATCTGCA 59.530 47.619 22.83 9.93 42.39 4.41
1064 1131 2.730090 CGATTTTGGCACAGATCTGCAC 60.730 50.000 22.83 14.27 42.39 4.57
1065 1132 0.592637 TTTTGGCACAGATCTGCACG 59.407 50.000 22.83 12.32 42.39 5.34
1066 1133 0.534877 TTTGGCACAGATCTGCACGT 60.535 50.000 22.83 0.00 42.39 4.49
1067 1134 0.534877 TTGGCACAGATCTGCACGTT 60.535 50.000 22.83 0.00 42.39 3.99
1068 1135 0.320050 TGGCACAGATCTGCACGTTA 59.680 50.000 22.83 1.94 39.08 3.18
1069 1136 1.066215 TGGCACAGATCTGCACGTTAT 60.066 47.619 22.83 0.00 39.08 1.89
1070 1137 1.594862 GGCACAGATCTGCACGTTATC 59.405 52.381 22.83 3.10 39.08 1.75
1071 1138 2.544685 GCACAGATCTGCACGTTATCT 58.455 47.619 22.83 0.00 37.11 1.98
1072 1139 2.932614 GCACAGATCTGCACGTTATCTT 59.067 45.455 22.83 0.00 37.11 2.40
1073 1140 3.372206 GCACAGATCTGCACGTTATCTTT 59.628 43.478 22.83 0.00 37.11 2.52
1074 1141 4.726021 GCACAGATCTGCACGTTATCTTTG 60.726 45.833 22.83 9.59 37.11 2.77
1075 1142 3.935203 ACAGATCTGCACGTTATCTTTGG 59.065 43.478 22.83 0.00 0.00 3.28
1076 1143 2.939103 AGATCTGCACGTTATCTTTGGC 59.061 45.455 0.00 0.00 0.00 4.52
1077 1144 1.075542 TCTGCACGTTATCTTTGGCG 58.924 50.000 0.00 0.00 0.00 5.69
1078 1145 1.075542 CTGCACGTTATCTTTGGCGA 58.924 50.000 0.00 0.00 0.00 5.54
1079 1146 1.665679 CTGCACGTTATCTTTGGCGAT 59.334 47.619 0.00 0.00 0.00 4.58
1080 1147 1.663643 TGCACGTTATCTTTGGCGATC 59.336 47.619 0.00 0.00 0.00 3.69
1081 1148 1.003866 GCACGTTATCTTTGGCGATCC 60.004 52.381 0.00 0.00 0.00 3.36
1082 1149 2.276201 CACGTTATCTTTGGCGATCCA 58.724 47.619 0.00 0.00 41.55 3.41
1093 1160 2.485122 CGATCCAAAACGCTGCCC 59.515 61.111 0.00 0.00 0.00 5.36
1094 1161 2.485122 GATCCAAAACGCTGCCCG 59.515 61.111 0.00 0.00 44.21 6.13
1095 1162 2.033448 ATCCAAAACGCTGCCCGA 59.967 55.556 0.61 0.00 41.02 5.14
1096 1163 2.253414 GATCCAAAACGCTGCCCGAC 62.253 60.000 0.61 0.00 41.02 4.79
1097 1164 2.748058 ATCCAAAACGCTGCCCGACT 62.748 55.000 0.61 0.00 41.02 4.18
1098 1165 2.556287 CAAAACGCTGCCCGACTC 59.444 61.111 0.61 0.00 41.02 3.36
1099 1166 3.041940 AAAACGCTGCCCGACTCG 61.042 61.111 0.61 0.00 41.02 4.18
1121 1188 5.424121 GGAGACCGATGTTTTATTCATGG 57.576 43.478 0.00 0.00 0.00 3.66
1122 1189 4.261197 GGAGACCGATGTTTTATTCATGGC 60.261 45.833 0.00 0.00 0.00 4.40
1123 1190 4.526970 AGACCGATGTTTTATTCATGGCT 58.473 39.130 0.00 0.00 0.00 4.75
1124 1191 4.949856 AGACCGATGTTTTATTCATGGCTT 59.050 37.500 0.00 0.00 0.00 4.35
1125 1192 4.997565 ACCGATGTTTTATTCATGGCTTG 58.002 39.130 0.00 0.00 0.00 4.01
1126 1193 4.142182 ACCGATGTTTTATTCATGGCTTGG 60.142 41.667 0.09 0.00 0.00 3.61
1127 1194 4.097741 CCGATGTTTTATTCATGGCTTGGA 59.902 41.667 0.09 0.00 0.00 3.53
1128 1195 5.394005 CCGATGTTTTATTCATGGCTTGGAA 60.394 40.000 0.09 0.00 0.00 3.53
1129 1196 5.516339 CGATGTTTTATTCATGGCTTGGAAC 59.484 40.000 0.09 0.00 0.00 3.62
1130 1197 5.798125 TGTTTTATTCATGGCTTGGAACA 57.202 34.783 0.09 0.00 0.00 3.18
1144 1211 1.807742 TGGAACAATAAAAGGACGCGG 59.192 47.619 12.47 0.00 31.92 6.46
1145 1212 1.466866 GGAACAATAAAAGGACGCGGC 60.467 52.381 12.47 7.53 0.00 6.53
1146 1213 1.198178 GAACAATAAAAGGACGCGGCA 59.802 47.619 17.00 0.00 0.00 5.69
1147 1214 0.519961 ACAATAAAAGGACGCGGCAC 59.480 50.000 17.00 2.52 0.00 5.01
1148 1215 0.802494 CAATAAAAGGACGCGGCACT 59.198 50.000 17.00 5.52 0.00 4.40
1149 1216 0.802494 AATAAAAGGACGCGGCACTG 59.198 50.000 17.00 0.00 0.00 3.66
1150 1217 0.321298 ATAAAAGGACGCGGCACTGT 60.321 50.000 17.00 0.00 0.00 3.55
1151 1218 1.225376 TAAAAGGACGCGGCACTGTG 61.225 55.000 17.00 2.76 0.00 3.66
1152 1219 3.750373 AAAGGACGCGGCACTGTGT 62.750 57.895 17.00 0.00 34.76 3.72
1153 1220 3.750373 AAGGACGCGGCACTGTGTT 62.750 57.895 17.00 0.00 31.57 3.32
1154 1221 3.712881 GGACGCGGCACTGTGTTC 61.713 66.667 17.00 0.00 31.57 3.18
1155 1222 2.964925 GACGCGGCACTGTGTTCA 60.965 61.111 7.34 0.00 31.57 3.18
1156 1223 2.943345 GACGCGGCACTGTGTTCAG 61.943 63.158 7.34 2.22 46.18 3.02
1157 1224 3.716006 CGCGGCACTGTGTTCAGG 61.716 66.667 9.86 0.00 45.14 3.86
1158 1225 4.030452 GCGGCACTGTGTTCAGGC 62.030 66.667 9.86 2.73 45.14 4.85
1159 1226 3.357079 CGGCACTGTGTTCAGGCC 61.357 66.667 9.86 0.00 45.62 5.19
1160 1227 2.203337 GGCACTGTGTTCAGGCCA 60.203 61.111 5.01 0.00 46.90 5.36
1161 1228 2.555547 GGCACTGTGTTCAGGCCAC 61.556 63.158 5.01 0.00 46.90 5.01
1162 1229 2.555547 GCACTGTGTTCAGGCCACC 61.556 63.158 5.01 0.00 45.14 4.61
1163 1230 1.152984 CACTGTGTTCAGGCCACCA 60.153 57.895 5.01 0.00 45.14 4.17
1164 1231 0.751277 CACTGTGTTCAGGCCACCAA 60.751 55.000 5.01 0.00 45.14 3.67
1165 1232 0.033601 ACTGTGTTCAGGCCACCAAA 60.034 50.000 5.01 0.00 45.14 3.28
1166 1233 0.670162 CTGTGTTCAGGCCACCAAAG 59.330 55.000 5.01 0.00 37.97 2.77
1167 1234 1.363807 GTGTTCAGGCCACCAAAGC 59.636 57.895 5.01 0.00 0.00 3.51
1239 1306 4.705519 GCCATGCACACGCCACAC 62.706 66.667 0.00 0.00 37.32 3.82
1437 1510 2.433145 TGCTTCGCTTCGCTCCTG 60.433 61.111 0.00 0.00 0.00 3.86
1597 1671 4.662961 CGCGTCAGTGCCACCAGA 62.663 66.667 0.00 0.00 0.00 3.86
1955 2338 2.890961 GGAAGAAGCCGCTACGCC 60.891 66.667 0.00 0.00 0.00 5.68
2072 2460 0.606604 AGCTTCAATGGCTGCCAAAG 59.393 50.000 27.24 23.91 36.95 2.77
2088 2476 2.146342 CAAAGACCAAGACGCTCATGT 58.854 47.619 0.00 0.00 0.00 3.21
2523 2960 0.674581 CTTTGCCGTGCATCAGGAGA 60.675 55.000 9.60 0.00 38.76 3.71
2535 2972 3.503363 GCATCAGGAGAACAATGTGTTGA 59.497 43.478 0.00 0.00 41.28 3.18
2609 3057 6.710744 ACTGACTATTACCAAGAAACCAGTTG 59.289 38.462 0.00 0.00 0.00 3.16
2947 5090 0.693049 AACTTTGCGACCATCCCTCT 59.307 50.000 0.00 0.00 0.00 3.69
2954 5097 1.982660 CGACCATCCCTCTAGCACTA 58.017 55.000 0.00 0.00 0.00 2.74
2958 5101 4.202264 CGACCATCCCTCTAGCACTATTTT 60.202 45.833 0.00 0.00 0.00 1.82
3064 5207 0.608640 ACTCCCTTCGCTTTCATCGT 59.391 50.000 0.00 0.00 0.00 3.73
3215 5358 1.303643 GCAGGAGTCTTGGTTGGGG 60.304 63.158 4.22 0.00 0.00 4.96
3328 5471 2.457366 AGACGGTGGCTTTAGTCTTG 57.543 50.000 0.00 0.00 40.64 3.02
3334 5477 3.408634 GGTGGCTTTAGTCTTGCTGTTA 58.591 45.455 0.00 0.00 0.00 2.41
3357 5500 8.665685 GTTATATGACTTTGTAAGGTCTTGTGG 58.334 37.037 8.11 0.00 34.01 4.17
3478 5621 2.030562 CCGCCGGAGACAGTTTGT 59.969 61.111 5.05 0.00 0.00 2.83
3506 5649 1.621992 GAGCGACTATGATGGGGAGA 58.378 55.000 0.00 0.00 0.00 3.71
3515 5658 1.067295 TGATGGGGAGATATGGCCAC 58.933 55.000 8.16 0.00 0.00 5.01
3704 5848 7.307694 TGCATCAATCAATGTGAAGTCTAAAC 58.692 34.615 0.00 0.00 0.00 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 1.822506 AAAGCTAAAGAAGACCGGGC 58.177 50.000 6.32 0.52 0.00 6.13
336 359 7.393234 TGACTCTCCTGAAAGAAAAAGAAACAA 59.607 33.333 0.00 0.00 34.07 2.83
342 367 4.212214 CCGTGACTCTCCTGAAAGAAAAAG 59.788 45.833 0.00 0.00 34.07 2.27
460 502 0.736053 GTGGAAGCAAAACCGTGACA 59.264 50.000 0.00 0.00 0.00 3.58
542 589 0.106918 AAAACAGAACCGGGAGCACA 60.107 50.000 6.32 0.00 0.00 4.57
620 680 7.505923 TCGAGATCTTCAAAACTAGATCCCATA 59.494 37.037 0.00 0.00 38.24 2.74
665 729 3.303526 CGTCCAAATCTCGAACCGTTTTT 60.304 43.478 0.00 0.00 0.00 1.94
745 812 2.639286 CCACTTGTCGCAACCTGC 59.361 61.111 0.00 0.00 40.69 4.85
814 881 4.331992 CACTGATTAAGGAGTACTCGTCGA 59.668 45.833 17.87 10.25 0.00 4.20
816 883 5.814764 TCACTGATTAAGGAGTACTCGTC 57.185 43.478 17.87 10.25 0.00 4.20
833 900 1.668419 GATGGACCCCGAAATCACTG 58.332 55.000 0.00 0.00 0.00 3.66
848 915 4.758251 TGCACGCACGAGGGATGG 62.758 66.667 3.50 0.00 0.00 3.51
849 916 3.490759 GTGCACGCACGAGGGATG 61.491 66.667 6.38 0.10 37.19 3.51
857 924 4.259734 CGAGTTAAAAATATGTGCACGCAC 59.740 41.667 15.20 15.20 46.33 5.34
858 925 4.399112 CGAGTTAAAAATATGTGCACGCA 58.601 39.130 13.13 2.04 0.00 5.24
859 926 3.237433 GCGAGTTAAAAATATGTGCACGC 59.763 43.478 13.13 2.34 35.06 5.34
860 927 3.473550 CGCGAGTTAAAAATATGTGCACG 59.526 43.478 13.13 0.00 0.00 5.34
861 928 3.237433 GCGCGAGTTAAAAATATGTGCAC 59.763 43.478 12.10 10.75 0.00 4.57
862 929 3.126171 AGCGCGAGTTAAAAATATGTGCA 59.874 39.130 12.10 0.00 34.07 4.57
863 930 3.680789 AGCGCGAGTTAAAAATATGTGC 58.319 40.909 12.10 0.00 0.00 4.57
864 931 6.502644 CGAAAAGCGCGAGTTAAAAATATGTG 60.503 38.462 12.10 0.00 0.00 3.21
865 932 5.506832 CGAAAAGCGCGAGTTAAAAATATGT 59.493 36.000 12.10 0.00 0.00 2.29
866 933 5.925192 CGAAAAGCGCGAGTTAAAAATATG 58.075 37.500 12.10 0.00 0.00 1.78
882 949 2.506881 CCCAATGGCGCGAAAAGC 60.507 61.111 12.10 0.00 43.95 3.51
898 965 2.551912 CGACATTATTGGGCCGGCC 61.552 63.158 38.57 38.57 0.00 6.13
899 966 0.889186 ATCGACATTATTGGGCCGGC 60.889 55.000 21.18 21.18 0.00 6.13
900 967 2.465860 TATCGACATTATTGGGCCGG 57.534 50.000 0.00 0.00 0.00 6.13
901 968 5.447279 GCTATTTATCGACATTATTGGGCCG 60.447 44.000 0.00 0.00 0.00 6.13
902 969 5.648092 AGCTATTTATCGACATTATTGGGCC 59.352 40.000 0.00 0.00 0.00 5.80
903 970 6.149474 ACAGCTATTTATCGACATTATTGGGC 59.851 38.462 0.00 0.00 0.00 5.36
904 971 7.411912 CGACAGCTATTTATCGACATTATTGGG 60.412 40.741 0.00 0.00 36.70 4.12
905 972 7.448228 CGACAGCTATTTATCGACATTATTGG 58.552 38.462 0.00 0.00 36.70 3.16
906 973 6.950428 GCGACAGCTATTTATCGACATTATTG 59.050 38.462 7.45 0.00 41.01 1.90
907 974 6.183359 CGCGACAGCTATTTATCGACATTATT 60.183 38.462 0.00 0.00 42.32 1.40
908 975 5.286320 CGCGACAGCTATTTATCGACATTAT 59.714 40.000 0.00 0.00 42.32 1.28
909 976 4.615541 CGCGACAGCTATTTATCGACATTA 59.384 41.667 0.00 0.00 42.32 1.90
910 977 3.425525 CGCGACAGCTATTTATCGACATT 59.574 43.478 0.00 0.00 42.32 2.71
911 978 2.980476 CGCGACAGCTATTTATCGACAT 59.020 45.455 0.00 0.00 42.32 3.06
912 979 2.381589 CGCGACAGCTATTTATCGACA 58.618 47.619 0.00 0.00 42.32 4.35
913 980 1.122680 GCGCGACAGCTATTTATCGAC 59.877 52.381 12.10 0.00 42.32 4.20
914 981 1.268845 TGCGCGACAGCTATTTATCGA 60.269 47.619 12.10 0.00 42.32 3.59
915 982 1.128513 TGCGCGACAGCTATTTATCG 58.871 50.000 12.10 0.00 42.32 2.92
916 983 1.192534 GGTGCGCGACAGCTATTTATC 59.807 52.381 12.10 0.00 43.65 1.75
917 984 1.217882 GGTGCGCGACAGCTATTTAT 58.782 50.000 12.10 0.00 43.65 1.40
918 985 2.673074 GGTGCGCGACAGCTATTTA 58.327 52.632 12.10 0.00 43.65 1.40
919 986 3.486263 GGTGCGCGACAGCTATTT 58.514 55.556 12.10 0.00 43.65 1.40
925 992 3.414700 GGACTTGGTGCGCGACAG 61.415 66.667 12.10 2.48 0.00 3.51
926 993 4.228567 TGGACTTGGTGCGCGACA 62.229 61.111 12.10 4.31 0.00 4.35
927 994 3.712881 GTGGACTTGGTGCGCGAC 61.713 66.667 12.10 5.05 0.00 5.19
928 995 4.980805 GGTGGACTTGGTGCGCGA 62.981 66.667 12.10 0.00 35.29 5.87
930 997 3.660111 GTGGTGGACTTGGTGCGC 61.660 66.667 0.00 0.00 33.75 6.09
931 998 2.111043 AGTGGTGGACTTGGTGCG 59.889 61.111 0.00 0.00 0.00 5.34
932 999 0.886490 CTCAGTGGTGGACTTGGTGC 60.886 60.000 0.00 0.00 29.75 5.01
933 1000 0.758734 TCTCAGTGGTGGACTTGGTG 59.241 55.000 0.00 0.00 29.75 4.17
934 1001 1.349026 CATCTCAGTGGTGGACTTGGT 59.651 52.381 0.00 0.00 29.75 3.67
935 1002 1.349026 ACATCTCAGTGGTGGACTTGG 59.651 52.381 0.00 0.00 29.75 3.61
936 1003 2.693069 GACATCTCAGTGGTGGACTTG 58.307 52.381 0.00 0.00 29.75 3.16
937 1004 1.273606 CGACATCTCAGTGGTGGACTT 59.726 52.381 0.00 0.00 29.75 3.01
938 1005 0.891373 CGACATCTCAGTGGTGGACT 59.109 55.000 0.00 0.00 34.02 3.85
939 1006 0.603569 ACGACATCTCAGTGGTGGAC 59.396 55.000 0.00 0.00 0.00 4.02
940 1007 0.888619 GACGACATCTCAGTGGTGGA 59.111 55.000 0.00 0.00 30.29 4.02
941 1008 0.108615 GGACGACATCTCAGTGGTGG 60.109 60.000 0.00 0.00 30.29 4.61
942 1009 0.603065 TGGACGACATCTCAGTGGTG 59.397 55.000 0.00 0.00 30.29 4.17
943 1010 1.561643 ATGGACGACATCTCAGTGGT 58.438 50.000 0.00 0.00 33.53 4.16
952 1019 0.603569 GATAGCCCGATGGACGACAT 59.396 55.000 0.00 0.00 45.77 3.06
953 1020 1.792118 CGATAGCCCGATGGACGACA 61.792 60.000 0.00 0.00 45.77 4.35
954 1021 1.081376 CGATAGCCCGATGGACGAC 60.081 63.158 0.00 0.00 45.77 4.34
955 1022 1.512996 GACGATAGCCCGATGGACGA 61.513 60.000 0.00 0.00 42.58 4.20
956 1023 1.081376 GACGATAGCCCGATGGACG 60.081 63.158 0.00 0.00 42.67 4.79
957 1024 0.318784 GTGACGATAGCCCGATGGAC 60.319 60.000 0.00 0.00 42.67 4.02
958 1025 1.792118 CGTGACGATAGCCCGATGGA 61.792 60.000 0.00 0.00 42.67 3.41
959 1026 1.371758 CGTGACGATAGCCCGATGG 60.372 63.158 0.00 0.00 42.67 3.51
960 1027 0.386100 CTCGTGACGATAGCCCGATG 60.386 60.000 8.60 0.00 42.67 3.84
961 1028 1.950007 CTCGTGACGATAGCCCGAT 59.050 57.895 8.60 0.00 42.67 4.18
962 1029 2.831366 GCTCGTGACGATAGCCCGA 61.831 63.158 8.60 0.00 42.67 5.14
963 1030 2.353607 GCTCGTGACGATAGCCCG 60.354 66.667 8.60 0.00 42.67 6.13
964 1031 2.353607 CGCTCGTGACGATAGCCC 60.354 66.667 8.60 0.00 42.67 5.19
965 1032 2.353607 CCGCTCGTGACGATAGCC 60.354 66.667 8.60 0.00 42.67 3.93
966 1033 3.025176 GCCGCTCGTGACGATAGC 61.025 66.667 8.60 8.77 42.67 2.97
967 1034 2.353607 GGCCGCTCGTGACGATAG 60.354 66.667 8.60 5.47 34.61 2.08
968 1035 2.827190 AGGCCGCTCGTGACGATA 60.827 61.111 8.60 0.00 34.61 2.92
969 1036 4.498520 CAGGCCGCTCGTGACGAT 62.499 66.667 8.60 0.00 34.61 3.73
983 1050 4.426313 GGGAGGTTTCGGGCCAGG 62.426 72.222 4.39 0.00 0.00 4.45
984 1051 4.778143 CGGGAGGTTTCGGGCCAG 62.778 72.222 4.39 0.00 0.00 4.85
986 1053 4.772687 GACGGGAGGTTTCGGGCC 62.773 72.222 0.00 0.00 0.00 5.80
987 1054 4.772687 GGACGGGAGGTTTCGGGC 62.773 72.222 0.00 0.00 0.00 6.13
988 1055 2.588856 GATGGACGGGAGGTTTCGGG 62.589 65.000 0.00 0.00 0.00 5.14
989 1056 1.153429 GATGGACGGGAGGTTTCGG 60.153 63.158 0.00 0.00 0.00 4.30
990 1057 0.460284 CAGATGGACGGGAGGTTTCG 60.460 60.000 0.00 0.00 0.00 3.46
991 1058 0.744771 GCAGATGGACGGGAGGTTTC 60.745 60.000 0.00 0.00 0.00 2.78
992 1059 1.299976 GCAGATGGACGGGAGGTTT 59.700 57.895 0.00 0.00 0.00 3.27
993 1060 1.903877 CTGCAGATGGACGGGAGGTT 61.904 60.000 8.42 0.00 0.00 3.50
994 1061 2.284625 TGCAGATGGACGGGAGGT 60.285 61.111 0.00 0.00 0.00 3.85
995 1062 2.503061 CTGCAGATGGACGGGAGG 59.497 66.667 8.42 0.00 0.00 4.30
996 1063 2.503061 CCTGCAGATGGACGGGAG 59.497 66.667 17.39 0.00 33.88 4.30
997 1064 3.785859 GCCTGCAGATGGACGGGA 61.786 66.667 17.39 0.00 33.88 5.14
998 1065 4.864334 GGCCTGCAGATGGACGGG 62.864 72.222 17.39 0.00 35.26 5.28
999 1066 4.864334 GGGCCTGCAGATGGACGG 62.864 72.222 17.39 0.00 32.08 4.79
1000 1067 3.411114 ATGGGCCTGCAGATGGACG 62.411 63.158 17.39 0.00 32.08 4.79
1001 1068 1.527844 GATGGGCCTGCAGATGGAC 60.528 63.158 17.39 0.15 0.00 4.02
1002 1069 2.002407 TGATGGGCCTGCAGATGGA 61.002 57.895 17.39 0.00 0.00 3.41
1003 1070 1.826921 GTGATGGGCCTGCAGATGG 60.827 63.158 17.39 0.00 0.00 3.51
1004 1071 2.184830 CGTGATGGGCCTGCAGATG 61.185 63.158 17.39 0.00 0.00 2.90
1005 1072 2.191375 CGTGATGGGCCTGCAGAT 59.809 61.111 17.39 0.00 0.00 2.90
1006 1073 4.100084 CCGTGATGGGCCTGCAGA 62.100 66.667 17.39 0.00 0.00 4.26
1007 1074 4.415150 ACCGTGATGGGCCTGCAG 62.415 66.667 6.78 6.78 44.64 4.41
1008 1075 4.408821 GACCGTGATGGGCCTGCA 62.409 66.667 4.53 0.00 41.58 4.41
1014 1081 1.480545 TCATACTGTGACCGTGATGGG 59.519 52.381 0.00 0.00 44.64 4.00
1015 1082 2.959507 TCATACTGTGACCGTGATGG 57.040 50.000 0.00 0.00 46.41 3.51
1024 1091 4.594123 TCGTTTTCTGGTCATACTGTGA 57.406 40.909 0.00 0.00 0.00 3.58
1025 1092 5.862924 AATCGTTTTCTGGTCATACTGTG 57.137 39.130 0.00 0.00 0.00 3.66
1026 1093 6.293955 CCAAAATCGTTTTCTGGTCATACTGT 60.294 38.462 9.91 0.00 0.00 3.55
1027 1094 6.086222 CCAAAATCGTTTTCTGGTCATACTG 58.914 40.000 9.91 0.00 0.00 2.74
1028 1095 5.335661 GCCAAAATCGTTTTCTGGTCATACT 60.336 40.000 15.39 0.00 31.31 2.12
1029 1096 4.857037 GCCAAAATCGTTTTCTGGTCATAC 59.143 41.667 15.39 0.00 31.31 2.39
1030 1097 4.520874 TGCCAAAATCGTTTTCTGGTCATA 59.479 37.500 15.39 4.74 31.31 2.15
1031 1098 3.320541 TGCCAAAATCGTTTTCTGGTCAT 59.679 39.130 15.39 0.00 31.31 3.06
1032 1099 2.690497 TGCCAAAATCGTTTTCTGGTCA 59.310 40.909 15.39 12.49 31.31 4.02
1033 1100 3.049912 GTGCCAAAATCGTTTTCTGGTC 58.950 45.455 15.39 11.03 31.31 4.02
1034 1101 2.428890 TGTGCCAAAATCGTTTTCTGGT 59.571 40.909 15.39 0.00 31.31 4.00
1035 1102 3.052036 CTGTGCCAAAATCGTTTTCTGG 58.948 45.455 12.20 12.20 0.00 3.86
1036 1103 3.963665 TCTGTGCCAAAATCGTTTTCTG 58.036 40.909 0.00 0.00 0.00 3.02
1037 1104 4.520492 AGATCTGTGCCAAAATCGTTTTCT 59.480 37.500 0.00 0.00 0.00 2.52
1038 1105 4.618489 CAGATCTGTGCCAAAATCGTTTTC 59.382 41.667 14.95 0.00 0.00 2.29
1039 1106 4.549458 CAGATCTGTGCCAAAATCGTTTT 58.451 39.130 14.95 0.00 0.00 2.43
1040 1107 3.612479 GCAGATCTGTGCCAAAATCGTTT 60.612 43.478 23.38 0.00 37.49 3.60
1041 1108 2.095059 GCAGATCTGTGCCAAAATCGTT 60.095 45.455 23.38 0.00 37.49 3.85
1042 1109 1.470098 GCAGATCTGTGCCAAAATCGT 59.530 47.619 23.38 0.00 37.49 3.73
1043 1110 1.469703 TGCAGATCTGTGCCAAAATCG 59.530 47.619 23.38 0.00 43.28 3.34
1044 1111 2.730090 CGTGCAGATCTGTGCCAAAATC 60.730 50.000 23.38 4.56 43.28 2.17
1045 1112 1.200716 CGTGCAGATCTGTGCCAAAAT 59.799 47.619 23.38 0.00 43.28 1.82
1046 1113 0.592637 CGTGCAGATCTGTGCCAAAA 59.407 50.000 23.38 0.00 43.28 2.44
1047 1114 0.534877 ACGTGCAGATCTGTGCCAAA 60.535 50.000 23.38 1.02 43.28 3.28
1048 1115 0.534877 AACGTGCAGATCTGTGCCAA 60.535 50.000 23.38 2.73 43.28 4.52
1049 1116 0.320050 TAACGTGCAGATCTGTGCCA 59.680 50.000 23.38 10.71 43.28 4.92
1050 1117 1.594862 GATAACGTGCAGATCTGTGCC 59.405 52.381 23.38 8.14 43.28 5.01
1051 1118 2.544685 AGATAACGTGCAGATCTGTGC 58.455 47.619 23.38 12.06 44.27 4.57
1052 1119 4.201753 CCAAAGATAACGTGCAGATCTGTG 60.202 45.833 23.38 15.63 35.51 3.66
1053 1120 3.935203 CCAAAGATAACGTGCAGATCTGT 59.065 43.478 23.38 6.31 30.33 3.41
1054 1121 3.242543 GCCAAAGATAACGTGCAGATCTG 60.243 47.826 18.84 18.84 30.33 2.90
1055 1122 2.939103 GCCAAAGATAACGTGCAGATCT 59.061 45.455 0.00 0.00 0.00 2.75
1056 1123 2.285834 CGCCAAAGATAACGTGCAGATC 60.286 50.000 0.00 0.00 0.00 2.75
1057 1124 1.665679 CGCCAAAGATAACGTGCAGAT 59.334 47.619 0.00 0.00 0.00 2.90
1058 1125 1.075542 CGCCAAAGATAACGTGCAGA 58.924 50.000 0.00 0.00 0.00 4.26
1059 1126 1.075542 TCGCCAAAGATAACGTGCAG 58.924 50.000 0.00 0.00 0.00 4.41
1060 1127 1.663643 GATCGCCAAAGATAACGTGCA 59.336 47.619 0.00 0.00 0.00 4.57
1061 1128 1.003866 GGATCGCCAAAGATAACGTGC 60.004 52.381 0.00 0.00 0.00 5.34
1062 1129 2.276201 TGGATCGCCAAAGATAACGTG 58.724 47.619 0.00 0.00 42.49 4.49
1063 1130 2.684001 TGGATCGCCAAAGATAACGT 57.316 45.000 0.00 0.00 42.49 3.99
1076 1143 2.485122 GGGCAGCGTTTTGGATCG 59.515 61.111 0.00 0.00 0.00 3.69
1077 1144 2.038269 TCGGGCAGCGTTTTGGATC 61.038 57.895 0.00 0.00 0.00 3.36
1078 1145 2.033448 TCGGGCAGCGTTTTGGAT 59.967 55.556 0.00 0.00 0.00 3.41
1079 1146 2.975799 GTCGGGCAGCGTTTTGGA 60.976 61.111 0.00 0.00 0.00 3.53
1080 1147 2.966309 GAGTCGGGCAGCGTTTTGG 61.966 63.158 0.00 0.00 0.00 3.28
1081 1148 2.556287 GAGTCGGGCAGCGTTTTG 59.444 61.111 0.00 0.00 0.00 2.44
1082 1149 3.041940 CGAGTCGGGCAGCGTTTT 61.042 61.111 4.10 0.00 0.00 2.43
1099 1166 4.261197 GCCATGAATAAAACATCGGTCTCC 60.261 45.833 0.00 0.00 0.00 3.71
1100 1167 4.576463 AGCCATGAATAAAACATCGGTCTC 59.424 41.667 0.00 0.00 0.00 3.36
1101 1168 4.526970 AGCCATGAATAAAACATCGGTCT 58.473 39.130 0.00 0.00 0.00 3.85
1102 1169 4.900635 AGCCATGAATAAAACATCGGTC 57.099 40.909 0.00 0.00 0.00 4.79
1103 1170 4.142182 CCAAGCCATGAATAAAACATCGGT 60.142 41.667 0.00 0.00 0.00 4.69
1104 1171 4.097741 TCCAAGCCATGAATAAAACATCGG 59.902 41.667 0.00 0.00 0.00 4.18
1105 1172 5.247507 TCCAAGCCATGAATAAAACATCG 57.752 39.130 0.00 0.00 0.00 3.84
1106 1173 6.397272 TGTTCCAAGCCATGAATAAAACATC 58.603 36.000 0.00 0.00 0.00 3.06
1107 1174 6.357579 TGTTCCAAGCCATGAATAAAACAT 57.642 33.333 0.00 0.00 0.00 2.71
1108 1175 5.798125 TGTTCCAAGCCATGAATAAAACA 57.202 34.783 0.00 0.00 0.00 2.83
1109 1176 8.770438 TTATTGTTCCAAGCCATGAATAAAAC 57.230 30.769 0.00 0.00 0.00 2.43
1110 1177 9.784531 TTTTATTGTTCCAAGCCATGAATAAAA 57.215 25.926 0.00 0.00 34.70 1.52
1111 1178 9.434420 CTTTTATTGTTCCAAGCCATGAATAAA 57.566 29.630 0.00 0.00 29.29 1.40
1112 1179 8.040132 CCTTTTATTGTTCCAAGCCATGAATAA 58.960 33.333 0.00 0.00 0.00 1.40
1113 1180 7.398618 TCCTTTTATTGTTCCAAGCCATGAATA 59.601 33.333 0.00 0.00 0.00 1.75
1114 1181 6.213195 TCCTTTTATTGTTCCAAGCCATGAAT 59.787 34.615 0.00 0.00 0.00 2.57
1115 1182 5.541868 TCCTTTTATTGTTCCAAGCCATGAA 59.458 36.000 0.00 0.00 0.00 2.57
1116 1183 5.047377 GTCCTTTTATTGTTCCAAGCCATGA 60.047 40.000 0.00 0.00 0.00 3.07
1117 1184 5.170748 GTCCTTTTATTGTTCCAAGCCATG 58.829 41.667 0.00 0.00 0.00 3.66
1118 1185 4.082245 CGTCCTTTTATTGTTCCAAGCCAT 60.082 41.667 0.00 0.00 0.00 4.40
1119 1186 3.254657 CGTCCTTTTATTGTTCCAAGCCA 59.745 43.478 0.00 0.00 0.00 4.75
1120 1187 3.833442 CGTCCTTTTATTGTTCCAAGCC 58.167 45.455 0.00 0.00 0.00 4.35
1121 1188 3.242518 GCGTCCTTTTATTGTTCCAAGC 58.757 45.455 0.00 0.00 0.00 4.01
1122 1189 3.488489 CGCGTCCTTTTATTGTTCCAAG 58.512 45.455 0.00 0.00 0.00 3.61
1123 1190 2.226912 CCGCGTCCTTTTATTGTTCCAA 59.773 45.455 4.92 0.00 0.00 3.53
1124 1191 1.807742 CCGCGTCCTTTTATTGTTCCA 59.192 47.619 4.92 0.00 0.00 3.53
1125 1192 1.466866 GCCGCGTCCTTTTATTGTTCC 60.467 52.381 4.92 0.00 0.00 3.62
1126 1193 1.198178 TGCCGCGTCCTTTTATTGTTC 59.802 47.619 4.92 0.00 0.00 3.18
1127 1194 1.068816 GTGCCGCGTCCTTTTATTGTT 60.069 47.619 4.92 0.00 0.00 2.83
1128 1195 0.519961 GTGCCGCGTCCTTTTATTGT 59.480 50.000 4.92 0.00 0.00 2.71
1129 1196 0.802494 AGTGCCGCGTCCTTTTATTG 59.198 50.000 4.92 0.00 0.00 1.90
1130 1197 0.802494 CAGTGCCGCGTCCTTTTATT 59.198 50.000 4.92 0.00 0.00 1.40
1131 1198 0.321298 ACAGTGCCGCGTCCTTTTAT 60.321 50.000 4.92 0.00 0.00 1.40
1132 1199 1.070105 ACAGTGCCGCGTCCTTTTA 59.930 52.632 4.92 0.00 0.00 1.52
1133 1200 2.203153 ACAGTGCCGCGTCCTTTT 60.203 55.556 4.92 0.00 0.00 2.27
1134 1201 2.972505 CACAGTGCCGCGTCCTTT 60.973 61.111 4.92 0.00 0.00 3.11
1135 1202 3.750373 AACACAGTGCCGCGTCCTT 62.750 57.895 4.92 0.00 0.00 3.36
1136 1203 4.235762 AACACAGTGCCGCGTCCT 62.236 61.111 4.92 0.00 0.00 3.85
1137 1204 3.712881 GAACACAGTGCCGCGTCC 61.713 66.667 4.92 0.00 0.00 4.79
1138 1205 2.943345 CTGAACACAGTGCCGCGTC 61.943 63.158 4.92 0.00 0.00 5.19
1139 1206 2.967076 CTGAACACAGTGCCGCGT 60.967 61.111 4.92 0.00 0.00 6.01
1140 1207 3.716006 CCTGAACACAGTGCCGCG 61.716 66.667 0.00 0.00 0.00 6.46
1141 1208 4.030452 GCCTGAACACAGTGCCGC 62.030 66.667 0.00 0.00 0.00 6.53
1142 1209 3.357079 GGCCTGAACACAGTGCCG 61.357 66.667 0.00 0.00 37.81 5.69
1143 1210 2.203337 TGGCCTGAACACAGTGCC 60.203 61.111 3.32 16.69 42.58 5.01
1144 1211 2.555547 GGTGGCCTGAACACAGTGC 61.556 63.158 3.32 0.00 40.54 4.40
1145 1212 0.751277 TTGGTGGCCTGAACACAGTG 60.751 55.000 3.32 0.00 40.54 3.66
1146 1213 0.033601 TTTGGTGGCCTGAACACAGT 60.034 50.000 3.32 0.00 40.54 3.55
1147 1214 0.670162 CTTTGGTGGCCTGAACACAG 59.330 55.000 3.32 0.00 40.54 3.66
1148 1215 1.391157 GCTTTGGTGGCCTGAACACA 61.391 55.000 3.32 0.00 40.54 3.72
1149 1216 1.363807 GCTTTGGTGGCCTGAACAC 59.636 57.895 3.32 0.00 38.10 3.32
1150 1217 1.832167 GGCTTTGGTGGCCTGAACA 60.832 57.895 3.32 0.00 45.57 3.18
1151 1218 3.051210 GGCTTTGGTGGCCTGAAC 58.949 61.111 3.32 0.00 45.57 3.18
1157 1224 1.299850 GAACGTTGGCTTTGGTGGC 60.300 57.895 5.00 0.00 0.00 5.01
1158 1225 1.008995 CGAACGTTGGCTTTGGTGG 60.009 57.895 5.00 0.00 0.00 4.61
1159 1226 0.316689 GTCGAACGTTGGCTTTGGTG 60.317 55.000 5.00 0.00 0.00 4.17
1160 1227 1.768112 CGTCGAACGTTGGCTTTGGT 61.768 55.000 5.00 0.00 36.74 3.67
1161 1228 1.083015 CGTCGAACGTTGGCTTTGG 60.083 57.895 5.00 0.00 36.74 3.28
1162 1229 1.721133 GCGTCGAACGTTGGCTTTG 60.721 57.895 5.00 0.00 44.73 2.77
1163 1230 2.629763 GCGTCGAACGTTGGCTTT 59.370 55.556 5.00 0.00 44.73 3.51
1164 1231 3.698463 CGCGTCGAACGTTGGCTT 61.698 61.111 5.00 0.00 44.73 4.35
1165 1232 4.634133 TCGCGTCGAACGTTGGCT 62.634 61.111 5.00 0.00 44.73 4.75
1166 1233 4.405173 GTCGCGTCGAACGTTGGC 62.405 66.667 5.00 2.66 44.73 4.52
1167 1234 3.025743 TGTCGCGTCGAACGTTGG 61.026 61.111 5.00 4.21 44.73 3.77
1168 1235 2.164673 GTGTCGCGTCGAACGTTG 59.835 61.111 5.00 0.00 44.73 4.10
1169 1236 3.381212 CGTGTCGCGTCGAACGTT 61.381 61.111 5.77 0.00 44.73 3.99
1955 2338 2.655364 CCGATGCCGTAGCTGTCG 60.655 66.667 0.00 0.70 43.07 4.35
2011 2398 1.028905 TTCGGGGTTGAAGTGCAAAG 58.971 50.000 0.00 0.00 38.44 2.77
2072 2460 1.078759 CCGACATGAGCGTCTTGGTC 61.079 60.000 0.00 0.00 45.46 4.02
2414 2845 0.953960 GGTCATAATTAGGGCCGCCG 60.954 60.000 4.81 0.00 0.00 6.46
2501 2935 1.136147 CTGATGCACGGCAAAGAGC 59.864 57.895 2.68 0.00 43.62 4.09
2523 2960 4.214310 TCCCAGACATTCAACACATTGTT 58.786 39.130 0.00 0.00 42.08 2.83
2535 2972 0.893727 GGTGGCGTTTCCCAGACATT 60.894 55.000 0.00 0.00 35.05 2.71
2609 3057 7.711339 CCTATGAGGTGAATCTTTTGTACTACC 59.289 40.741 0.00 0.00 0.00 3.18
2679 3134 9.825972 TGATCAGAAAGATTCAACGAAAAATAC 57.174 29.630 0.00 0.00 37.00 1.89
2947 5090 5.142061 TCACCAACTCGAAAATAGTGCTA 57.858 39.130 0.00 0.00 0.00 3.49
2954 5097 4.789012 ATGCATTCACCAACTCGAAAAT 57.211 36.364 0.00 0.00 0.00 1.82
2958 5101 3.555547 CGATAATGCATTCACCAACTCGA 59.444 43.478 16.86 0.00 0.00 4.04
3064 5207 0.608856 TACCTTACTCGGTCGTGCCA 60.609 55.000 0.00 0.00 38.49 4.92
3075 5218 4.023980 TGTACTGCTGCATCTACCTTACT 58.976 43.478 1.31 0.00 0.00 2.24
3077 5220 4.649218 TGATGTACTGCTGCATCTACCTTA 59.351 41.667 1.31 0.00 41.33 2.69
3215 5358 3.707102 ACCTAACATCTAAGACCTGAGGC 59.293 47.826 0.00 0.00 0.00 4.70
3328 5471 8.391106 CAAGACCTTACAAAGTCATATAACAGC 58.609 37.037 0.00 0.00 0.00 4.40
3334 5477 6.012858 TCCCACAAGACCTTACAAAGTCATAT 60.013 38.462 0.00 0.00 0.00 1.78
3357 5500 8.764287 GCATGCAACCACTTTATTAATTATTCC 58.236 33.333 14.21 0.00 0.00 3.01
3478 5621 0.457443 CATAGTCGCTCCTCTGCACA 59.543 55.000 0.00 0.00 0.00 4.57
3515 5658 2.939103 CCCAAATTTCTAGAGACGGCAG 59.061 50.000 0.00 0.00 0.00 4.85
3633 5776 2.040939 TCCAGTTTCAAGGTACGACCA 58.959 47.619 6.78 0.00 41.95 4.02
3634 5777 2.825861 TCCAGTTTCAAGGTACGACC 57.174 50.000 0.00 0.00 38.99 4.79
3704 5848 3.882888 TCTTTACACTTTGCAGTTGGAGG 59.117 43.478 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.