Multiple sequence alignment - TraesCS7D01G165000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G165000 chr7D 100.000 3959 0 0 1 3959 114467753 114471711 0.000000e+00 7312.0
1 TraesCS7D01G165000 chr7D 97.274 587 16 0 1 587 151540549 151541135 0.000000e+00 996.0
2 TraesCS7D01G165000 chr7D 87.983 466 22 4 833 1265 114150846 114150382 1.630000e-143 520.0
3 TraesCS7D01G165000 chr7D 86.735 392 37 9 1538 1926 114149852 114149473 4.730000e-114 422.0
4 TraesCS7D01G165000 chr7D 93.818 275 12 3 1267 1536 114150187 114149913 3.680000e-110 409.0
5 TraesCS7D01G165000 chr7D 79.452 584 79 29 2237 2800 104366074 104365512 3.740000e-100 375.0
6 TraesCS7D01G165000 chr7D 83.979 387 46 3 2753 3125 104225312 104224928 1.350000e-94 357.0
7 TraesCS7D01G165000 chr7D 80.942 467 69 15 2343 2800 104226574 104226119 6.290000e-93 351.0
8 TraesCS7D01G165000 chr7D 77.679 560 85 33 2237 2771 226114393 226113849 4.970000e-79 305.0
9 TraesCS7D01G165000 chr7D 88.596 228 17 4 3740 3959 104224911 104224685 6.520000e-68 268.0
10 TraesCS7D01G165000 chr7D 78.542 480 38 21 925 1365 104227289 104226836 5.080000e-64 255.0
11 TraesCS7D01G165000 chr7D 90.909 187 11 5 1976 2161 481855022 481854841 3.060000e-61 246.0
12 TraesCS7D01G165000 chr7D 82.545 275 20 11 995 1266 104366582 104366333 2.400000e-52 217.0
13 TraesCS7D01G165000 chr7D 90.968 155 14 0 1772 1926 226114230 226114076 4.010000e-50 209.0
14 TraesCS7D01G165000 chr7D 86.275 153 16 3 1773 1925 104226520 104226373 1.140000e-35 161.0
15 TraesCS7D01G165000 chr7D 91.150 113 10 0 1594 1706 104226800 104226688 1.910000e-33 154.0
16 TraesCS7D01G165000 chr7D 83.007 153 17 6 1773 1925 104365911 104365768 3.210000e-26 130.0
17 TraesCS7D01G165000 chr7D 84.444 90 9 2 1267 1351 104366291 104366202 2.540000e-12 84.2
18 TraesCS7D01G165000 chr7D 91.667 60 5 0 1392 1451 114149827 114149768 2.540000e-12 84.2
19 TraesCS7D01G165000 chr7A 95.820 933 28 3 995 1926 119306943 119306021 0.000000e+00 1496.0
20 TraesCS7D01G165000 chr7A 94.863 915 33 5 2216 3125 119466694 119467599 0.000000e+00 1417.0
21 TraesCS7D01G165000 chr7A 91.371 788 35 5 895 1650 119461803 119462589 0.000000e+00 1048.0
22 TraesCS7D01G165000 chr7A 80.392 867 105 24 2301 3122 238604245 238603399 2.040000e-167 599.0
23 TraesCS7D01G165000 chr7A 78.890 919 128 42 2250 3125 108547223 108546328 2.670000e-156 562.0
24 TraesCS7D01G165000 chr7A 95.909 220 9 0 3740 3959 119467616 119467835 1.350000e-94 357.0
25 TraesCS7D01G165000 chr7A 87.676 284 17 12 995 1266 108547791 108547514 8.260000e-82 315.0
26 TraesCS7D01G165000 chr7A 97.576 165 4 0 1646 1810 119465816 119465980 2.330000e-72 283.0
27 TraesCS7D01G165000 chr7A 81.586 353 41 21 2429 2766 108565763 108565420 1.810000e-68 270.0
28 TraesCS7D01G165000 chr7A 92.262 168 8 1 832 994 119307144 119306977 2.380000e-57 233.0
29 TraesCS7D01G165000 chr7A 88.947 190 14 2 588 777 119460487 119460669 1.110000e-55 228.0
30 TraesCS7D01G165000 chr7A 89.677 155 16 0 1772 1926 238121776 238121622 8.680000e-47 198.0
31 TraesCS7D01G165000 chr7A 86.592 179 13 6 3740 3907 108546311 108546133 1.880000e-43 187.0
32 TraesCS7D01G165000 chr7A 85.714 154 15 5 1773 1925 108547067 108546920 5.300000e-34 156.0
33 TraesCS7D01G165000 chr7A 90.323 62 5 1 1392 1453 119306374 119306314 3.280000e-11 80.5
34 TraesCS7D01G165000 chr7A 79.675 123 15 9 1272 1387 238605847 238605728 3.280000e-11 80.5
35 TraesCS7D01G165000 chr7B 91.505 977 74 4 2984 3959 73993679 73994647 0.000000e+00 1336.0
36 TraesCS7D01G165000 chr7B 91.779 742 41 9 1267 1995 73990511 73991245 0.000000e+00 1014.0
37 TraesCS7D01G165000 chr7B 88.178 719 39 7 588 1265 73989617 73990330 0.000000e+00 815.0
38 TraesCS7D01G165000 chr7B 88.818 626 29 7 681 1265 73936960 73936335 0.000000e+00 730.0
39 TraesCS7D01G165000 chr7B 82.763 789 89 24 2371 3125 62478848 62478073 0.000000e+00 660.0
40 TraesCS7D01G165000 chr7B 87.380 523 51 9 1407 1926 73935149 73934639 1.590000e-163 586.0
41 TraesCS7D01G165000 chr7B 97.398 269 7 0 2246 2514 73991294 73991562 3.610000e-125 459.0
42 TraesCS7D01G165000 chr7B 94.144 222 8 2 3740 3959 73992721 73992939 2.280000e-87 333.0
43 TraesCS7D01G165000 chr7B 85.666 293 29 6 993 1276 62479630 62479342 2.990000e-76 296.0
44 TraesCS7D01G165000 chr7B 81.183 372 51 16 2436 2795 62483530 62483166 8.380000e-72 281.0
45 TraesCS7D01G165000 chr7B 88.889 153 12 3 1773 1925 62478822 62478675 2.430000e-42 183.0
46 TraesCS7D01G165000 chr7B 88.535 157 9 4 1267 1414 73936140 73935984 8.740000e-42 182.0
47 TraesCS7D01G165000 chr7B 91.667 60 5 0 1392 1451 73934993 73934934 2.540000e-12 84.2
48 TraesCS7D01G165000 chr7B 90.769 65 3 3 1267 1330 73936283 73936221 2.540000e-12 84.2
49 TraesCS7D01G165000 chr3A 97.956 587 12 0 1 587 660861369 660860783 0.000000e+00 1018.0
50 TraesCS7D01G165000 chr3A 96.796 593 17 2 1 591 687206951 687207543 0.000000e+00 989.0
51 TraesCS7D01G165000 chr3A 92.857 182 11 2 1994 2174 291796676 291796856 3.030000e-66 263.0
52 TraesCS7D01G165000 chr6D 97.785 587 13 0 1 587 464214284 464213698 0.000000e+00 1013.0
53 TraesCS7D01G165000 chr3D 97.789 588 11 2 1 587 214959144 214959730 0.000000e+00 1013.0
54 TraesCS7D01G165000 chr3D 93.398 621 40 1 3124 3743 559109489 559108869 0.000000e+00 918.0
55 TraesCS7D01G165000 chr5D 97.445 587 14 1 1 587 404194329 404193744 0.000000e+00 1000.0
56 TraesCS7D01G165000 chr5D 94.253 174 9 1 1994 2166 408752639 408752466 8.440000e-67 265.0
57 TraesCS7D01G165000 chr2D 97.124 591 15 2 1 590 70391360 70391949 0.000000e+00 996.0
58 TraesCS7D01G165000 chr2D 97.119 590 15 2 1 589 101660297 101660885 0.000000e+00 994.0
59 TraesCS7D01G165000 chr2D 93.590 624 34 4 3124 3743 53792363 53791742 0.000000e+00 926.0
60 TraesCS7D01G165000 chr2D 93.548 186 8 4 1984 2165 609886779 609886964 1.400000e-69 274.0
61 TraesCS7D01G165000 chr1A 96.785 591 17 2 1 589 579858757 579858167 0.000000e+00 985.0
62 TraesCS7D01G165000 chr1A 91.803 183 14 1 1976 2157 38717015 38716833 1.830000e-63 254.0
63 TraesCS7D01G165000 chr1A 100.000 28 0 0 967 994 502603988 502604015 7.000000e-03 52.8
64 TraesCS7D01G165000 chr4B 93.548 620 38 2 3126 3744 629957935 629957317 0.000000e+00 922.0
65 TraesCS7D01G165000 chr4B 93.226 620 41 1 3124 3743 174041428 174042046 0.000000e+00 911.0
66 TraesCS7D01G165000 chr1B 93.419 623 39 2 3122 3743 644278849 644278228 0.000000e+00 922.0
67 TraesCS7D01G165000 chr1B 93.408 622 39 2 3123 3743 269218255 269218875 0.000000e+00 920.0
68 TraesCS7D01G165000 chr4A 93.538 619 38 2 3126 3743 702119680 702119063 0.000000e+00 920.0
69 TraesCS7D01G165000 chr4A 93.333 180 7 4 1979 2157 141122842 141122667 1.090000e-65 261.0
70 TraesCS7D01G165000 chr4D 93.355 617 40 1 3127 3743 315600660 315601275 0.000000e+00 911.0
71 TraesCS7D01G165000 chr4D 94.220 173 8 2 1988 2158 457481222 457481050 3.030000e-66 263.0
72 TraesCS7D01G165000 chr6B 97.006 167 4 1 1993 2158 639991657 639991491 3.010000e-71 279.0
73 TraesCS7D01G165000 chr6A 95.882 170 5 2 1994 2162 458217710 458217878 1.400000e-69 274.0
74 TraesCS7D01G165000 chr2A 94.828 174 7 2 1993 2164 469790201 469790028 1.810000e-68 270.0
75 TraesCS7D01G165000 chr1D 94.798 173 8 1 1991 2162 9218375 9218203 6.520000e-68 268.0
76 TraesCS7D01G165000 chr1D 90.659 182 14 3 1980 2158 295840131 295840312 5.110000e-59 239.0
77 TraesCS7D01G165000 chr1D 91.329 173 14 1 1987 2158 442070194 442070022 6.610000e-58 235.0
78 TraesCS7D01G165000 chr3B 93.370 181 9 3 1991 2170 111133822 111133644 8.440000e-67 265.0
79 TraesCS7D01G165000 chr2B 90.761 184 14 3 1980 2160 3942296 3942479 3.950000e-60 243.0
80 TraesCS7D01G165000 chr2B 91.160 181 12 3 1979 2157 718352838 718353016 3.950000e-60 243.0
81 TraesCS7D01G165000 chr2B 90.217 184 15 3 1980 2160 4211865 4212048 1.840000e-58 237.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G165000 chr7D 114467753 114471711 3958 False 7312.000000 7312 100.000000 1 3959 1 chr7D.!!$F1 3958
1 TraesCS7D01G165000 chr7D 151540549 151541135 586 False 996.000000 996 97.274000 1 587 1 chr7D.!!$F2 586
2 TraesCS7D01G165000 chr7D 114149473 114150846 1373 True 358.800000 520 90.050750 833 1926 4 chr7D.!!$R4 1093
3 TraesCS7D01G165000 chr7D 104224685 104227289 2604 True 257.666667 357 84.914000 925 3959 6 chr7D.!!$R2 3034
4 TraesCS7D01G165000 chr7D 226113849 226114393 544 True 257.000000 305 84.323500 1772 2771 2 chr7D.!!$R5 999
5 TraesCS7D01G165000 chr7D 104365512 104366582 1070 True 201.550000 375 82.362000 995 2800 4 chr7D.!!$R3 1805
6 TraesCS7D01G165000 chr7A 119460487 119467835 7348 False 666.600000 1417 93.733200 588 3959 5 chr7A.!!$F1 3371
7 TraesCS7D01G165000 chr7A 119306021 119307144 1123 True 603.166667 1496 92.801667 832 1926 3 chr7A.!!$R4 1094
8 TraesCS7D01G165000 chr7A 238603399 238605847 2448 True 339.750000 599 80.033500 1272 3122 2 chr7A.!!$R5 1850
9 TraesCS7D01G165000 chr7A 108546133 108547791 1658 True 305.000000 562 84.718000 995 3907 4 chr7A.!!$R3 2912
10 TraesCS7D01G165000 chr7B 73989617 73994647 5030 False 791.400000 1336 92.600800 588 3959 5 chr7B.!!$F1 3371
11 TraesCS7D01G165000 chr7B 62478073 62483530 5457 True 355.000000 660 84.625250 993 3125 4 chr7B.!!$R1 2132
12 TraesCS7D01G165000 chr7B 73934639 73936960 2321 True 333.280000 730 89.433800 681 1926 5 chr7B.!!$R2 1245
13 TraesCS7D01G165000 chr3A 660860783 660861369 586 True 1018.000000 1018 97.956000 1 587 1 chr3A.!!$R1 586
14 TraesCS7D01G165000 chr3A 687206951 687207543 592 False 989.000000 989 96.796000 1 591 1 chr3A.!!$F2 590
15 TraesCS7D01G165000 chr6D 464213698 464214284 586 True 1013.000000 1013 97.785000 1 587 1 chr6D.!!$R1 586
16 TraesCS7D01G165000 chr3D 214959144 214959730 586 False 1013.000000 1013 97.789000 1 587 1 chr3D.!!$F1 586
17 TraesCS7D01G165000 chr3D 559108869 559109489 620 True 918.000000 918 93.398000 3124 3743 1 chr3D.!!$R1 619
18 TraesCS7D01G165000 chr5D 404193744 404194329 585 True 1000.000000 1000 97.445000 1 587 1 chr5D.!!$R1 586
19 TraesCS7D01G165000 chr2D 70391360 70391949 589 False 996.000000 996 97.124000 1 590 1 chr2D.!!$F1 589
20 TraesCS7D01G165000 chr2D 101660297 101660885 588 False 994.000000 994 97.119000 1 589 1 chr2D.!!$F2 588
21 TraesCS7D01G165000 chr2D 53791742 53792363 621 True 926.000000 926 93.590000 3124 3743 1 chr2D.!!$R1 619
22 TraesCS7D01G165000 chr1A 579858167 579858757 590 True 985.000000 985 96.785000 1 589 1 chr1A.!!$R2 588
23 TraesCS7D01G165000 chr4B 629957317 629957935 618 True 922.000000 922 93.548000 3126 3744 1 chr4B.!!$R1 618
24 TraesCS7D01G165000 chr4B 174041428 174042046 618 False 911.000000 911 93.226000 3124 3743 1 chr4B.!!$F1 619
25 TraesCS7D01G165000 chr1B 644278228 644278849 621 True 922.000000 922 93.419000 3122 3743 1 chr1B.!!$R1 621
26 TraesCS7D01G165000 chr1B 269218255 269218875 620 False 920.000000 920 93.408000 3123 3743 1 chr1B.!!$F1 620
27 TraesCS7D01G165000 chr4A 702119063 702119680 617 True 920.000000 920 93.538000 3126 3743 1 chr4A.!!$R2 617
28 TraesCS7D01G165000 chr4D 315600660 315601275 615 False 911.000000 911 93.355000 3127 3743 1 chr4D.!!$F1 616

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
490 499 0.948678 TGTGGGCGCTAGTTGTTTTC 59.051 50.000 7.64 0.0 0.0 2.29 F
538 547 1.071699 TCTTAGGCACCACACAGAACC 59.928 52.381 0.00 0.0 0.0 3.62 F
830 852 1.096416 TCCGTTGTTGTTGGTTGGTC 58.904 50.000 0.00 0.0 0.0 4.02 F
2014 10514 0.328258 CTCCCTCCGTTCCCAAATGT 59.672 55.000 0.00 0.0 0.0 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1994 10494 0.328258 CATTTGGGAACGGAGGGAGT 59.672 55.000 0.0 0.0 0.00 3.85 R
1996 10496 1.659022 TACATTTGGGAACGGAGGGA 58.341 50.000 0.0 0.0 0.00 4.20 R
2188 10697 2.197465 ACCCCTACAGAAACCATCTCC 58.803 52.381 0.0 0.0 35.73 3.71 R
3495 14257 0.037590 TTTAGCATCGTTGGTGGGCT 59.962 50.000 8.4 0.0 38.55 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
490 499 0.948678 TGTGGGCGCTAGTTGTTTTC 59.051 50.000 7.64 0.00 0.00 2.29
538 547 1.071699 TCTTAGGCACCACACAGAACC 59.928 52.381 0.00 0.00 0.00 3.62
699 710 3.871594 CGGAAGATGGTGTGATCTTTACC 59.128 47.826 0.00 0.48 41.78 2.85
830 852 1.096416 TCCGTTGTTGTTGGTTGGTC 58.904 50.000 0.00 0.00 0.00 4.02
922 2024 2.743928 CTCTCGGCTGCCACAACC 60.744 66.667 20.29 0.00 0.00 3.77
923 2025 4.329545 TCTCGGCTGCCACAACCC 62.330 66.667 20.29 0.00 0.00 4.11
984 2087 3.001406 AAACCCTAGCCGACGCCT 61.001 61.111 0.00 0.00 34.57 5.52
1104 4017 2.036089 CTCTCAGGTACCTAATTCCGCC 59.964 54.545 15.80 0.00 0.00 6.13
1188 4105 8.213489 ACTTTTATCACCAAATTAACCCCATT 57.787 30.769 0.00 0.00 0.00 3.16
1464 5458 7.289782 TGGATTTGATGAACCCCTTTTATATGG 59.710 37.037 0.00 0.00 0.00 2.74
1600 5655 2.514592 CCCCGCTCGCACATTGAT 60.515 61.111 0.00 0.00 0.00 2.57
1739 10213 6.419771 GTTCTTCTGCTGTACTGTTGTTAAC 58.580 40.000 0.00 0.00 0.00 2.01
1994 10494 9.627123 CTTTCCCCAGACAATAACAAAGATATA 57.373 33.333 0.00 0.00 0.00 0.86
1996 10496 8.331931 TCCCCAGACAATAACAAAGATATACT 57.668 34.615 0.00 0.00 0.00 2.12
1997 10497 8.429641 TCCCCAGACAATAACAAAGATATACTC 58.570 37.037 0.00 0.00 0.00 2.59
1998 10498 7.661847 CCCCAGACAATAACAAAGATATACTCC 59.338 40.741 0.00 0.00 0.00 3.85
2000 10500 8.432805 CCAGACAATAACAAAGATATACTCCCT 58.567 37.037 0.00 0.00 0.00 4.20
2001 10501 9.482627 CAGACAATAACAAAGATATACTCCCTC 57.517 37.037 0.00 0.00 0.00 4.30
2003 10503 7.442656 ACAATAACAAAGATATACTCCCTCCG 58.557 38.462 0.00 0.00 0.00 4.63
2004 10504 7.070821 ACAATAACAAAGATATACTCCCTCCGT 59.929 37.037 0.00 0.00 0.00 4.69
2005 10505 5.952347 AACAAAGATATACTCCCTCCGTT 57.048 39.130 0.00 0.00 0.00 4.44
2007 10507 4.344390 ACAAAGATATACTCCCTCCGTTCC 59.656 45.833 0.00 0.00 0.00 3.62
2009 10509 2.449730 AGATATACTCCCTCCGTTCCCA 59.550 50.000 0.00 0.00 0.00 4.37
2011 10511 1.961133 ATACTCCCTCCGTTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
2012 10512 1.961133 TACTCCCTCCGTTCCCAAAT 58.039 50.000 0.00 0.00 0.00 2.32
2014 10514 0.328258 CTCCCTCCGTTCCCAAATGT 59.672 55.000 0.00 0.00 0.00 2.71
2015 10515 1.557832 CTCCCTCCGTTCCCAAATGTA 59.442 52.381 0.00 0.00 0.00 2.29
2016 10516 1.986631 TCCCTCCGTTCCCAAATGTAA 59.013 47.619 0.00 0.00 0.00 2.41
2017 10517 2.026636 TCCCTCCGTTCCCAAATGTAAG 60.027 50.000 0.00 0.00 0.00 2.34
2018 10518 2.290705 CCCTCCGTTCCCAAATGTAAGT 60.291 50.000 0.00 0.00 0.00 2.24
2020 10520 3.307480 CCTCCGTTCCCAAATGTAAGTCT 60.307 47.826 0.00 0.00 0.00 3.24
2021 10521 4.324267 CTCCGTTCCCAAATGTAAGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
2022 10522 4.721132 TCCGTTCCCAAATGTAAGTCTTT 58.279 39.130 0.00 0.00 0.00 2.52
2023 10523 5.134661 TCCGTTCCCAAATGTAAGTCTTTT 58.865 37.500 0.00 0.00 0.00 2.27
2024 10524 5.595133 TCCGTTCCCAAATGTAAGTCTTTTT 59.405 36.000 0.00 0.00 0.00 1.94
2025 10525 6.771749 TCCGTTCCCAAATGTAAGTCTTTTTA 59.228 34.615 0.00 0.00 0.00 1.52
2027 10527 7.040961 CCGTTCCCAAATGTAAGTCTTTTTAGA 60.041 37.037 0.00 0.00 0.00 2.10
2028 10528 8.015658 CGTTCCCAAATGTAAGTCTTTTTAGAG 58.984 37.037 0.00 0.00 0.00 2.43
2029 10529 9.063615 GTTCCCAAATGTAAGTCTTTTTAGAGA 57.936 33.333 0.00 0.00 0.00 3.10
2030 10530 9.807921 TTCCCAAATGTAAGTCTTTTTAGAGAT 57.192 29.630 0.00 0.00 0.00 2.75
2031 10531 9.807921 TCCCAAATGTAAGTCTTTTTAGAGATT 57.192 29.630 0.00 0.00 0.00 2.40
2041 10541 9.495572 AAGTCTTTTTAGAGATTCCAACTAGTG 57.504 33.333 0.00 0.00 0.00 2.74
2042 10542 8.871125 AGTCTTTTTAGAGATTCCAACTAGTGA 58.129 33.333 0.00 0.00 0.00 3.41
2044 10544 8.871125 TCTTTTTAGAGATTCCAACTAGTGACT 58.129 33.333 0.00 0.00 0.00 3.41
2047 10547 8.645814 TTTAGAGATTCCAACTAGTGACTACA 57.354 34.615 0.00 0.00 0.00 2.74
2048 10548 8.824756 TTAGAGATTCCAACTAGTGACTACAT 57.175 34.615 0.00 0.00 0.00 2.29
2049 10549 9.916360 TTAGAGATTCCAACTAGTGACTACATA 57.084 33.333 0.00 0.00 0.00 2.29
2050 10550 8.228035 AGAGATTCCAACTAGTGACTACATAC 57.772 38.462 0.00 0.00 0.00 2.39
2051 10551 7.012515 AGAGATTCCAACTAGTGACTACATACG 59.987 40.741 0.00 0.00 0.00 3.06
2052 10552 5.571784 TTCCAACTAGTGACTACATACGG 57.428 43.478 0.00 0.00 0.00 4.02
2053 10553 4.847198 TCCAACTAGTGACTACATACGGA 58.153 43.478 0.00 0.00 0.00 4.69
2054 10554 4.880120 TCCAACTAGTGACTACATACGGAG 59.120 45.833 0.00 0.00 0.00 4.63
2075 10575 8.915036 ACGGAGTAAAATGAGTGAATCTATACT 58.085 33.333 0.00 0.00 41.94 2.12
2076 10576 9.400638 CGGAGTAAAATGAGTGAATCTATACTC 57.599 37.037 0.00 0.00 42.77 2.59
2109 10609 8.217131 TGTCTACATACATCGTATGTTGTAGT 57.783 34.615 21.20 10.57 44.27 2.73
2110 10610 8.340443 TGTCTACATACATCGTATGTTGTAGTC 58.660 37.037 21.20 22.32 44.27 2.59
2111 10611 7.802251 GTCTACATACATCGTATGTTGTAGTCC 59.198 40.741 21.20 19.35 44.27 3.85
2112 10612 6.459670 ACATACATCGTATGTTGTAGTCCA 57.540 37.500 12.80 0.00 41.63 4.02
2113 10613 7.050970 ACATACATCGTATGTTGTAGTCCAT 57.949 36.000 12.80 0.00 41.63 3.41
2114 10614 7.497595 ACATACATCGTATGTTGTAGTCCATT 58.502 34.615 12.80 0.00 41.63 3.16
2115 10615 7.985184 ACATACATCGTATGTTGTAGTCCATTT 59.015 33.333 12.80 0.00 41.63 2.32
2116 10616 6.662414 ACATCGTATGTTGTAGTCCATTTG 57.338 37.500 0.00 0.00 41.63 2.32
2117 10617 6.403049 ACATCGTATGTTGTAGTCCATTTGA 58.597 36.000 0.00 0.00 41.63 2.69
2118 10618 6.876789 ACATCGTATGTTGTAGTCCATTTGAA 59.123 34.615 0.00 0.00 41.63 2.69
2119 10619 7.389330 ACATCGTATGTTGTAGTCCATTTGAAA 59.611 33.333 0.00 0.00 41.63 2.69
2120 10620 7.915293 TCGTATGTTGTAGTCCATTTGAAAT 57.085 32.000 0.00 0.00 0.00 2.17
2121 10621 7.747888 TCGTATGTTGTAGTCCATTTGAAATG 58.252 34.615 10.84 10.84 0.00 2.32
2122 10622 7.389330 TCGTATGTTGTAGTCCATTTGAAATGT 59.611 33.333 15.93 1.43 0.00 2.71
2123 10623 7.692291 CGTATGTTGTAGTCCATTTGAAATGTC 59.308 37.037 15.93 9.10 0.00 3.06
2124 10624 7.765695 ATGTTGTAGTCCATTTGAAATGTCT 57.234 32.000 15.93 14.81 0.00 3.41
2125 10625 8.862325 ATGTTGTAGTCCATTTGAAATGTCTA 57.138 30.769 15.93 13.97 0.00 2.59
2126 10626 8.684386 TGTTGTAGTCCATTTGAAATGTCTAA 57.316 30.769 15.93 4.89 0.00 2.10
2127 10627 9.126151 TGTTGTAGTCCATTTGAAATGTCTAAA 57.874 29.630 15.93 10.39 0.00 1.85
2128 10628 9.959749 GTTGTAGTCCATTTGAAATGTCTAAAA 57.040 29.630 15.93 14.59 0.00 1.52
2133 10633 9.136323 AGTCCATTTGAAATGTCTAAAAAGACT 57.864 29.630 15.93 14.21 39.41 3.24
2134 10634 9.750125 GTCCATTTGAAATGTCTAAAAAGACTT 57.250 29.630 15.93 0.00 39.41 3.01
2151 10651 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
2152 10652 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2153 10653 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2154 10654 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2155 10655 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
2164 10664 3.118371 GGAACGGAGGGAGTATGTTTGAT 60.118 47.826 0.00 0.00 0.00 2.57
2172 10672 6.351286 GGAGGGAGTATGTTTGATGCAATTTT 60.351 38.462 0.00 0.00 0.00 1.82
2177 10677 8.462016 GGAGTATGTTTGATGCAATTTTCTAGT 58.538 33.333 0.00 0.00 0.00 2.57
2188 10697 7.214467 TGCAATTTTCTAGTTCCCTTGTTAG 57.786 36.000 0.00 0.00 0.00 2.34
2200 10709 4.175962 TCCCTTGTTAGGAGATGGTTTCT 58.824 43.478 0.00 0.00 45.05 2.52
2201 10710 4.019321 TCCCTTGTTAGGAGATGGTTTCTG 60.019 45.833 0.00 0.00 45.05 3.02
2202 10711 4.263506 CCCTTGTTAGGAGATGGTTTCTGT 60.264 45.833 0.00 0.00 45.05 3.41
2203 10712 5.045869 CCCTTGTTAGGAGATGGTTTCTGTA 60.046 44.000 0.00 0.00 45.05 2.74
2204 10713 6.109359 CCTTGTTAGGAGATGGTTTCTGTAG 58.891 44.000 0.00 0.00 45.05 2.74
2205 10714 5.677319 TGTTAGGAGATGGTTTCTGTAGG 57.323 43.478 0.00 0.00 33.74 3.18
2206 10715 4.469945 TGTTAGGAGATGGTTTCTGTAGGG 59.530 45.833 0.00 0.00 33.74 3.53
2207 10716 2.482494 AGGAGATGGTTTCTGTAGGGG 58.518 52.381 0.00 0.00 33.74 4.79
2208 10717 2.197465 GGAGATGGTTTCTGTAGGGGT 58.803 52.381 0.00 0.00 33.74 4.95
2209 10718 2.576648 GGAGATGGTTTCTGTAGGGGTT 59.423 50.000 0.00 0.00 33.74 4.11
2210 10719 3.010250 GGAGATGGTTTCTGTAGGGGTTT 59.990 47.826 0.00 0.00 33.74 3.27
2211 10720 4.508584 GGAGATGGTTTCTGTAGGGGTTTT 60.509 45.833 0.00 0.00 33.74 2.43
2212 10721 4.407365 AGATGGTTTCTGTAGGGGTTTTG 58.593 43.478 0.00 0.00 31.79 2.44
2213 10722 3.955524 TGGTTTCTGTAGGGGTTTTGA 57.044 42.857 0.00 0.00 0.00 2.69
2214 10723 4.463050 TGGTTTCTGTAGGGGTTTTGAT 57.537 40.909 0.00 0.00 0.00 2.57
2237 11036 9.303116 TGATGCAATTACCTTTAAAGACCTTTA 57.697 29.630 16.98 0.00 34.23 1.85
2516 11315 4.260743 CGGTTGCATCCACTAACATACATG 60.261 45.833 14.13 0.00 0.00 3.21
2517 11316 4.881273 GGTTGCATCCACTAACATACATGA 59.119 41.667 9.02 0.00 0.00 3.07
2518 11317 5.356751 GGTTGCATCCACTAACATACATGAA 59.643 40.000 9.02 0.00 0.00 2.57
2523 11322 6.652481 GCATCCACTAACATACATGAATAGCT 59.348 38.462 0.00 0.00 0.00 3.32
3226 13988 3.651423 TCCAGATCCGTAGACCATCTAGA 59.349 47.826 0.00 0.00 28.01 2.43
3322 14084 4.139786 ACTTGTTGTAGTAGACAGTCGGA 58.860 43.478 0.00 0.00 39.88 4.55
3327 14089 5.068198 TGTTGTAGTAGACAGTCGGAAAGTT 59.932 40.000 0.00 0.00 39.88 2.66
3328 14090 6.262944 TGTTGTAGTAGACAGTCGGAAAGTTA 59.737 38.462 0.00 0.00 39.88 2.24
3331 14093 6.656270 TGTAGTAGACAGTCGGAAAGTTATCA 59.344 38.462 0.00 0.00 32.86 2.15
3491 14253 2.203640 TGCCGGAGACACACCTCT 60.204 61.111 5.05 0.00 33.79 3.69
3495 14257 1.254026 CCGGAGACACACCTCTACAA 58.746 55.000 0.00 0.00 33.79 2.41
3513 14279 0.037590 AAGCCCACCAACGATGCTAA 59.962 50.000 0.00 0.00 0.00 3.09
3610 14376 2.375174 TGAGCAGGACACAAACCCTAAT 59.625 45.455 0.00 0.00 0.00 1.73
3613 14379 4.993028 AGCAGGACACAAACCCTAATAAA 58.007 39.130 0.00 0.00 0.00 1.40
3670 14437 2.124570 CTTGCCAGGATCCACCGG 60.125 66.667 15.82 12.38 44.74 5.28
3678 14445 4.176752 GATCCACCGGGCCTCCAC 62.177 72.222 6.32 0.00 0.00 4.02
3773 14543 3.183237 GCAGGTGCTTTGTTAAGTACG 57.817 47.619 0.00 0.00 44.87 3.67
3939 14721 7.156673 ACTGCTTGCAGAAATCATAAATTGTT 58.843 30.769 26.71 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
538 547 2.009774 CGTTAAGGAATCTGCCCACAG 58.990 52.381 0.00 0.00 45.95 3.66
579 589 5.710099 AGATTCTTTTATTCAAAGGACGCCA 59.290 36.000 0.00 0.00 42.18 5.69
626 636 1.525995 CACTTGTCGCAACCTGGGT 60.526 57.895 0.00 0.00 0.00 4.51
663 673 1.614903 TCTTCCGAGGCTACGACAAAA 59.385 47.619 7.73 0.00 35.09 2.44
718 730 6.665695 ACCCAAGGAGTACTTCTTGTTTTTA 58.334 36.000 32.63 0.00 38.83 1.52
816 828 1.748493 GCTTCAGACCAACCAACAACA 59.252 47.619 0.00 0.00 0.00 3.33
830 852 1.378250 CCTCTTGGGCCTGCTTCAG 60.378 63.158 4.53 0.00 0.00 3.02
923 2025 3.917760 GATCCGGGGCCTCGTCTG 61.918 72.222 26.30 9.15 0.00 3.51
984 2087 1.997311 CATGGCACCAGGAGGAGGA 60.997 63.158 0.00 0.00 38.69 3.71
1104 4017 0.814010 GGTGGATCGAATGAACGGGG 60.814 60.000 0.00 0.00 0.00 5.73
1600 5655 4.377021 GGTTCATCATATCCGCTGTGTAA 58.623 43.478 0.00 0.00 0.00 2.41
1739 10213 1.203174 AGAGTGGGTTTGGGAAATGGG 60.203 52.381 0.00 0.00 0.00 4.00
1777 10266 3.580895 TGGTCACCAGTATGTCTAAAGCA 59.419 43.478 0.00 0.00 0.00 3.91
1866 10357 4.491676 GTTAGTGGATGCTAACGACAGAA 58.508 43.478 0.00 0.00 40.63 3.02
1994 10494 0.328258 CATTTGGGAACGGAGGGAGT 59.672 55.000 0.00 0.00 0.00 3.85
1996 10496 1.659022 TACATTTGGGAACGGAGGGA 58.341 50.000 0.00 0.00 0.00 4.20
1997 10497 2.290705 ACTTACATTTGGGAACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
1998 10498 3.007635 GACTTACATTTGGGAACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2000 10500 4.360951 AAGACTTACATTTGGGAACGGA 57.639 40.909 0.00 0.00 0.00 4.69
2001 10501 5.447624 AAAAGACTTACATTTGGGAACGG 57.552 39.130 0.00 0.00 0.00 4.44
2003 10503 9.063615 TCTCTAAAAAGACTTACATTTGGGAAC 57.936 33.333 0.00 0.00 0.00 3.62
2004 10504 9.807921 ATCTCTAAAAAGACTTACATTTGGGAA 57.192 29.630 0.00 0.00 0.00 3.97
2005 10505 9.807921 AATCTCTAAAAAGACTTACATTTGGGA 57.192 29.630 0.00 0.00 0.00 4.37
2015 10515 9.495572 CACTAGTTGGAATCTCTAAAAAGACTT 57.504 33.333 0.00 0.00 0.00 3.01
2016 10516 8.871125 TCACTAGTTGGAATCTCTAAAAAGACT 58.129 33.333 0.00 0.00 0.00 3.24
2017 10517 8.927721 GTCACTAGTTGGAATCTCTAAAAAGAC 58.072 37.037 0.00 0.00 0.00 3.01
2018 10518 8.871125 AGTCACTAGTTGGAATCTCTAAAAAGA 58.129 33.333 0.00 0.00 0.00 2.52
2020 10520 9.924650 GTAGTCACTAGTTGGAATCTCTAAAAA 57.075 33.333 0.00 0.00 0.00 1.94
2021 10521 9.085645 TGTAGTCACTAGTTGGAATCTCTAAAA 57.914 33.333 0.00 0.00 0.00 1.52
2022 10522 8.645814 TGTAGTCACTAGTTGGAATCTCTAAA 57.354 34.615 0.00 0.00 0.00 1.85
2023 10523 8.824756 ATGTAGTCACTAGTTGGAATCTCTAA 57.175 34.615 0.00 0.00 0.00 2.10
2024 10524 9.339850 GTATGTAGTCACTAGTTGGAATCTCTA 57.660 37.037 0.00 0.00 0.00 2.43
2025 10525 7.012515 CGTATGTAGTCACTAGTTGGAATCTCT 59.987 40.741 0.00 0.00 0.00 3.10
2027 10527 6.039493 CCGTATGTAGTCACTAGTTGGAATCT 59.961 42.308 0.00 0.00 0.00 2.40
2028 10528 6.039047 TCCGTATGTAGTCACTAGTTGGAATC 59.961 42.308 0.00 0.00 0.00 2.52
2029 10529 5.889853 TCCGTATGTAGTCACTAGTTGGAAT 59.110 40.000 0.00 0.00 0.00 3.01
2030 10530 5.255687 TCCGTATGTAGTCACTAGTTGGAA 58.744 41.667 0.00 0.00 0.00 3.53
2031 10531 4.847198 TCCGTATGTAGTCACTAGTTGGA 58.153 43.478 0.00 0.00 0.00 3.53
2033 10533 5.814764 ACTCCGTATGTAGTCACTAGTTG 57.185 43.478 0.00 0.00 0.00 3.16
2035 10535 7.928307 TTTTACTCCGTATGTAGTCACTAGT 57.072 36.000 0.00 0.00 0.00 2.57
2036 10536 8.618677 TCATTTTACTCCGTATGTAGTCACTAG 58.381 37.037 0.00 0.00 0.00 2.57
2037 10537 8.510243 TCATTTTACTCCGTATGTAGTCACTA 57.490 34.615 0.00 0.00 0.00 2.74
2040 10540 7.121611 TCACTCATTTTACTCCGTATGTAGTCA 59.878 37.037 0.00 0.00 0.00 3.41
2041 10541 7.478322 TCACTCATTTTACTCCGTATGTAGTC 58.522 38.462 0.00 0.00 0.00 2.59
2042 10542 7.400599 TCACTCATTTTACTCCGTATGTAGT 57.599 36.000 0.00 0.00 0.00 2.73
2044 10544 8.692710 AGATTCACTCATTTTACTCCGTATGTA 58.307 33.333 0.00 0.00 0.00 2.29
2049 10549 8.915036 AGTATAGATTCACTCATTTTACTCCGT 58.085 33.333 0.00 0.00 0.00 4.69
2050 10550 9.400638 GAGTATAGATTCACTCATTTTACTCCG 57.599 37.037 0.00 0.00 40.74 4.63
2083 10583 8.847196 ACTACAACATACGATGTATGTAGACAT 58.153 33.333 27.62 17.47 45.23 3.06
2084 10584 8.217131 ACTACAACATACGATGTATGTAGACA 57.783 34.615 27.62 7.75 45.23 3.41
2085 10585 7.802251 GGACTACAACATACGATGTATGTAGAC 59.198 40.741 27.62 24.59 45.23 2.59
2086 10586 7.499895 TGGACTACAACATACGATGTATGTAGA 59.500 37.037 27.62 17.47 45.23 2.59
2087 10587 7.645402 TGGACTACAACATACGATGTATGTAG 58.355 38.462 19.58 24.32 46.21 2.74
2088 10588 7.571080 TGGACTACAACATACGATGTATGTA 57.429 36.000 19.58 11.50 44.07 2.29
2089 10589 6.459670 TGGACTACAACATACGATGTATGT 57.540 37.500 15.00 15.00 44.07 2.29
2090 10590 7.946655 AATGGACTACAACATACGATGTATG 57.053 36.000 13.82 13.82 44.07 2.39
2091 10591 8.201464 TCAAATGGACTACAACATACGATGTAT 58.799 33.333 0.00 0.00 44.07 2.29
2092 10592 7.548967 TCAAATGGACTACAACATACGATGTA 58.451 34.615 0.00 0.00 44.07 2.29
2094 10594 6.902224 TCAAATGGACTACAACATACGATG 57.098 37.500 0.00 0.00 0.00 3.84
2095 10595 7.915293 TTTCAAATGGACTACAACATACGAT 57.085 32.000 0.00 0.00 0.00 3.73
2096 10596 7.389330 ACATTTCAAATGGACTACAACATACGA 59.611 33.333 14.70 0.00 0.00 3.43
2097 10597 7.526608 ACATTTCAAATGGACTACAACATACG 58.473 34.615 14.70 0.00 0.00 3.06
2098 10598 8.730680 AGACATTTCAAATGGACTACAACATAC 58.269 33.333 14.70 0.00 0.00 2.39
2099 10599 8.862325 AGACATTTCAAATGGACTACAACATA 57.138 30.769 14.70 0.00 0.00 2.29
2100 10600 7.765695 AGACATTTCAAATGGACTACAACAT 57.234 32.000 14.70 0.00 0.00 2.71
2101 10601 8.684386 TTAGACATTTCAAATGGACTACAACA 57.316 30.769 14.70 1.25 0.00 3.33
2102 10602 9.959749 TTTTAGACATTTCAAATGGACTACAAC 57.040 29.630 14.70 0.00 0.00 3.32
2107 10607 9.136323 AGTCTTTTTAGACATTTCAAATGGACT 57.864 29.630 14.70 14.18 41.02 3.85
2108 10608 9.750125 AAGTCTTTTTAGACATTTCAAATGGAC 57.250 29.630 14.70 8.92 41.02 4.02
2125 10625 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
2126 10626 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
2127 10627 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2128 10628 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2129 10629 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2130 10630 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2131 10631 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2132 10632 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2133 10633 7.731688 ACATACTCCCTCCGTTCCTAAATATAA 59.268 37.037 0.00 0.00 0.00 0.98
2134 10634 7.243824 ACATACTCCCTCCGTTCCTAAATATA 58.756 38.462 0.00 0.00 0.00 0.86
2135 10635 6.082707 ACATACTCCCTCCGTTCCTAAATAT 58.917 40.000 0.00 0.00 0.00 1.28
2136 10636 5.461327 ACATACTCCCTCCGTTCCTAAATA 58.539 41.667 0.00 0.00 0.00 1.40
2137 10637 4.296056 ACATACTCCCTCCGTTCCTAAAT 58.704 43.478 0.00 0.00 0.00 1.40
2138 10638 3.716431 ACATACTCCCTCCGTTCCTAAA 58.284 45.455 0.00 0.00 0.00 1.85
2139 10639 3.393426 ACATACTCCCTCCGTTCCTAA 57.607 47.619 0.00 0.00 0.00 2.69
2140 10640 3.393426 AACATACTCCCTCCGTTCCTA 57.607 47.619 0.00 0.00 0.00 2.94
2141 10641 2.236395 CAAACATACTCCCTCCGTTCCT 59.764 50.000 0.00 0.00 0.00 3.36
2142 10642 2.235402 TCAAACATACTCCCTCCGTTCC 59.765 50.000 0.00 0.00 0.00 3.62
2143 10643 3.604875 TCAAACATACTCCCTCCGTTC 57.395 47.619 0.00 0.00 0.00 3.95
2144 10644 3.873910 CATCAAACATACTCCCTCCGTT 58.126 45.455 0.00 0.00 0.00 4.44
2145 10645 2.420129 GCATCAAACATACTCCCTCCGT 60.420 50.000 0.00 0.00 0.00 4.69
2146 10646 2.213499 GCATCAAACATACTCCCTCCG 58.787 52.381 0.00 0.00 0.00 4.63
2147 10647 3.281727 TGCATCAAACATACTCCCTCC 57.718 47.619 0.00 0.00 0.00 4.30
2148 10648 5.841957 AATTGCATCAAACATACTCCCTC 57.158 39.130 0.00 0.00 0.00 4.30
2149 10649 6.438425 AGAAAATTGCATCAAACATACTCCCT 59.562 34.615 0.00 0.00 0.00 4.20
2150 10650 6.633856 AGAAAATTGCATCAAACATACTCCC 58.366 36.000 0.00 0.00 0.00 4.30
2151 10651 8.462016 ACTAGAAAATTGCATCAAACATACTCC 58.538 33.333 0.00 0.00 0.00 3.85
2152 10652 9.846248 AACTAGAAAATTGCATCAAACATACTC 57.154 29.630 0.00 0.00 0.00 2.59
2153 10653 9.846248 GAACTAGAAAATTGCATCAAACATACT 57.154 29.630 0.00 0.00 0.00 2.12
2154 10654 9.076596 GGAACTAGAAAATTGCATCAAACATAC 57.923 33.333 0.00 0.00 0.00 2.39
2155 10655 8.250332 GGGAACTAGAAAATTGCATCAAACATA 58.750 33.333 0.00 0.00 0.00 2.29
2164 10664 6.208599 CCTAACAAGGGAACTAGAAAATTGCA 59.791 38.462 0.00 0.00 42.68 4.08
2172 10672 4.962995 CCATCTCCTAACAAGGGAACTAGA 59.037 45.833 0.00 0.00 42.68 2.43
2177 10677 4.601857 AGAAACCATCTCCTAACAAGGGAA 59.398 41.667 0.00 0.00 30.46 3.97
2188 10697 2.197465 ACCCCTACAGAAACCATCTCC 58.803 52.381 0.00 0.00 35.73 3.71
2200 10709 4.464597 GGTAATTGCATCAAAACCCCTACA 59.535 41.667 0.00 0.00 31.49 2.74
2201 10710 4.709886 AGGTAATTGCATCAAAACCCCTAC 59.290 41.667 0.00 0.00 35.44 3.18
2202 10711 4.941713 AGGTAATTGCATCAAAACCCCTA 58.058 39.130 0.00 0.00 35.44 3.53
2203 10712 3.790126 AGGTAATTGCATCAAAACCCCT 58.210 40.909 0.00 0.00 35.44 4.79
2204 10713 4.551702 AAGGTAATTGCATCAAAACCCC 57.448 40.909 0.00 0.00 35.44 4.95
2205 10714 7.875554 TCTTTAAAGGTAATTGCATCAAAACCC 59.124 33.333 15.13 0.00 35.44 4.11
2206 10715 8.708742 GTCTTTAAAGGTAATTGCATCAAAACC 58.291 33.333 15.13 6.42 35.23 3.27
2207 10716 8.708742 GGTCTTTAAAGGTAATTGCATCAAAAC 58.291 33.333 15.13 0.41 0.00 2.43
2208 10717 8.646900 AGGTCTTTAAAGGTAATTGCATCAAAA 58.353 29.630 15.13 0.00 0.00 2.44
2209 10718 8.189119 AGGTCTTTAAAGGTAATTGCATCAAA 57.811 30.769 15.13 0.00 0.00 2.69
2210 10719 7.775053 AGGTCTTTAAAGGTAATTGCATCAA 57.225 32.000 15.13 0.00 0.00 2.57
2211 10720 7.775053 AAGGTCTTTAAAGGTAATTGCATCA 57.225 32.000 15.13 0.00 0.00 3.07
2389 11188 5.851720 TGCCTAGAAGCTATCAAGATTGAG 58.148 41.667 1.32 0.00 41.08 3.02
2523 11322 9.772973 AGACGGTAATGCATATATTCTAAAACA 57.227 29.630 0.00 0.00 0.00 2.83
2970 13059 1.556911 ACCATAAGCAGAGTGGACCTG 59.443 52.381 4.71 0.00 36.82 4.00
2971 13063 1.958288 ACCATAAGCAGAGTGGACCT 58.042 50.000 4.71 0.00 36.82 3.85
3226 13988 3.594134 GCTTCAGTGCTTGTAGTCATCT 58.406 45.455 0.00 0.00 0.00 2.90
3322 14084 5.450818 TGGGACCTTAGCATGATAACTTT 57.549 39.130 0.00 0.00 0.00 2.66
3327 14089 5.023514 TCCTATGGGACCTTAGCATGATA 57.976 43.478 0.00 0.00 36.57 2.15
3328 14090 3.874316 TCCTATGGGACCTTAGCATGAT 58.126 45.455 0.00 0.00 36.57 2.45
3491 14253 0.958382 GCATCGTTGGTGGGCTTGTA 60.958 55.000 0.00 0.00 0.00 2.41
3495 14257 0.037590 TTTAGCATCGTTGGTGGGCT 59.962 50.000 8.40 0.00 38.55 5.19
3690 14457 1.748122 GTCCGCCTCGTCTCTGGTA 60.748 63.158 0.00 0.00 0.00 3.25
3694 14461 2.752238 CAGGTCCGCCTCGTCTCT 60.752 66.667 0.00 0.00 44.97 3.10
3727 14494 0.321653 CAGCTTAGGGTTCGTGCCTT 60.322 55.000 0.00 0.00 0.00 4.35
3773 14543 8.868916 CAATTACCAAACACTAATTAACATGCC 58.131 33.333 0.00 0.00 0.00 4.40
3864 14637 5.917462 TCACCATTCGATTCAGTGTCATAT 58.083 37.500 0.00 0.00 0.00 1.78
3874 14647 7.530861 GCGAAATACTAAATCACCATTCGATTC 59.469 37.037 8.55 0.00 40.40 2.52
3878 14658 6.287107 AGCGAAATACTAAATCACCATTCG 57.713 37.500 0.00 0.00 40.78 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.