Multiple sequence alignment - TraesCS7D01G164100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G164100 chr7D 100.000 6060 0 0 1 6060 113440356 113446415 0.000000e+00 11191
1 TraesCS7D01G164100 chr7B 94.862 3153 108 19 2223 5346 73131186 73134313 0.000000e+00 4876
2 TraesCS7D01G164100 chr7B 87.423 1781 132 50 471 2220 73127639 73129358 0.000000e+00 1964
3 TraesCS7D01G164100 chr7B 94.203 690 31 6 5377 6060 73134313 73134999 0.000000e+00 1044
4 TraesCS7D01G164100 chr7B 85.053 281 14 9 1 279 73008864 73009118 1.680000e-65 261
5 TraesCS7D01G164100 chr7A 93.702 1953 80 16 3425 5346 118459996 118461936 0.000000e+00 2885
6 TraesCS7D01G164100 chr7A 96.335 1610 53 3 1816 3425 118455861 118457464 0.000000e+00 2641
7 TraesCS7D01G164100 chr7A 88.533 1875 122 50 19 1823 118453920 118455771 0.000000e+00 2185
8 TraesCS7D01G164100 chr7A 87.573 684 49 21 5393 6060 118461941 118462604 0.000000e+00 760
9 TraesCS7D01G164100 chr6A 89.897 871 68 14 992 1845 567136247 567137114 0.000000e+00 1103
10 TraesCS7D01G164100 chr5B 89.576 873 72 12 992 1848 122996341 122995472 0.000000e+00 1090
11 TraesCS7D01G164100 chr1B 89.080 870 76 13 995 1848 32606925 32606059 0.000000e+00 1062
12 TraesCS7D01G164100 chr4A 88.634 871 83 11 992 1848 347708106 347707238 0.000000e+00 1046
13 TraesCS7D01G164100 chr1A 88.818 626 58 6 992 1606 5796859 5797483 0.000000e+00 758
14 TraesCS7D01G164100 chr1A 88.019 626 63 6 992 1606 467571524 467570900 0.000000e+00 730
15 TraesCS7D01G164100 chr2A 88.640 625 57 7 995 1606 668842576 668841953 0.000000e+00 749
16 TraesCS7D01G164100 chr6B 90.667 75 6 1 1981 2054 650785380 650785454 1.390000e-16 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G164100 chr7D 113440356 113446415 6059 False 11191.00 11191 100.000000 1 6060 1 chr7D.!!$F1 6059
1 TraesCS7D01G164100 chr7B 73127639 73134999 7360 False 2628.00 4876 92.162667 471 6060 3 chr7B.!!$F2 5589
2 TraesCS7D01G164100 chr7A 118453920 118462604 8684 False 2117.75 2885 91.535750 19 6060 4 chr7A.!!$F1 6041
3 TraesCS7D01G164100 chr6A 567136247 567137114 867 False 1103.00 1103 89.897000 992 1845 1 chr6A.!!$F1 853
4 TraesCS7D01G164100 chr5B 122995472 122996341 869 True 1090.00 1090 89.576000 992 1848 1 chr5B.!!$R1 856
5 TraesCS7D01G164100 chr1B 32606059 32606925 866 True 1062.00 1062 89.080000 995 1848 1 chr1B.!!$R1 853
6 TraesCS7D01G164100 chr4A 347707238 347708106 868 True 1046.00 1046 88.634000 992 1848 1 chr4A.!!$R1 856
7 TraesCS7D01G164100 chr1A 5796859 5797483 624 False 758.00 758 88.818000 992 1606 1 chr1A.!!$F1 614
8 TraesCS7D01G164100 chr1A 467570900 467571524 624 True 730.00 730 88.019000 992 1606 1 chr1A.!!$R1 614
9 TraesCS7D01G164100 chr2A 668841953 668842576 623 True 749.00 749 88.640000 995 1606 1 chr2A.!!$R1 611

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
283 288 0.037697 TGTGCTCAAATCGCCGTACT 60.038 50.000 0.00 0.00 0.00 2.73 F
891 934 1.291877 CTTTCACCAGCCGTTCTCCG 61.292 60.000 0.00 0.00 0.00 4.63 F
1730 1819 1.327303 TGAATGCGGAAAAACTGGCT 58.673 45.000 0.00 0.00 0.00 4.75 F
1832 2020 0.465097 CCAGTGGGATGGTGAGCATC 60.465 60.000 15.79 15.79 35.47 3.91 F
1918 2106 0.982704 AGTCAAGGTGCTCTGCTGAT 59.017 50.000 0.00 0.00 0.00 2.90 F
1921 2109 1.208052 TCAAGGTGCTCTGCTGATACC 59.792 52.381 15.21 15.21 32.68 2.73 F
1922 2110 1.209019 CAAGGTGCTCTGCTGATACCT 59.791 52.381 18.20 18.20 39.67 3.08 F
3026 5045 2.025037 TCTGAGTTTACCGCCCTAGGTA 60.025 50.000 8.29 0.00 43.89 3.08 F
4171 8728 0.825425 TTGGTTCATGGGCTTTCGCA 60.825 50.000 0.00 0.00 39.56 5.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1802 1893 0.187117 TCCCACTGGTTGCAATTCCA 59.813 50.000 0.59 5.41 0.0 3.53 R
1803 1894 1.205417 CATCCCACTGGTTGCAATTCC 59.795 52.381 0.59 0.00 0.0 3.01 R
2919 4938 1.203052 AGGCCAGCAAATGAAATCACG 59.797 47.619 5.01 0.00 0.0 4.35 R
3783 8337 4.163839 AGAAGATACAGCCAGAAAGAGCAT 59.836 41.667 0.00 0.00 0.0 3.79 R
3814 8368 8.131100 CCAACAGCCATCTACAAATTAACATAG 58.869 37.037 0.00 0.00 0.0 2.23 R
4010 8565 7.611467 TGACATATTCCTCACAATAAAAGCAGT 59.389 33.333 0.00 0.00 0.0 4.40 R
4046 8601 4.275196 CCAAAGTAGCATCATGATGAGTGG 59.725 45.833 34.65 24.58 41.2 4.00 R
4869 9437 1.485066 ACAGGCCCTTTATCACTACCG 59.515 52.381 0.00 0.00 0.0 4.02 R
5167 9735 0.457035 GTACCGCGGACAACCTGATA 59.543 55.000 35.90 7.27 0.0 2.15 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 3.496160 GGTACTGGTGGAGTTCATTGTGT 60.496 47.826 0.00 0.00 35.96 3.72
46 47 7.370383 AGTTCATTGTGTTCGCTTCAAATTAT 58.630 30.769 0.00 0.00 0.00 1.28
50 51 5.940192 TGTGTTCGCTTCAAATTATGAGT 57.060 34.783 0.00 0.00 39.77 3.41
53 54 7.866729 TGTGTTCGCTTCAAATTATGAGTTAA 58.133 30.769 0.00 0.00 39.77 2.01
71 72 9.696917 ATGAGTTAAATGGAGTTGACAAAATTC 57.303 29.630 0.00 0.00 0.00 2.17
104 105 2.038557 TGTTGTTCTAGGAAGGACAGCC 59.961 50.000 0.00 0.00 42.35 4.85
132 133 3.319755 GAATCGGCCATGCAAATAATGG 58.680 45.455 2.24 0.00 46.29 3.16
149 150 2.579410 TGGTAGCAGAAAAACTCCCC 57.421 50.000 0.00 0.00 0.00 4.81
150 151 2.062636 TGGTAGCAGAAAAACTCCCCT 58.937 47.619 0.00 0.00 0.00 4.79
151 152 2.039879 TGGTAGCAGAAAAACTCCCCTC 59.960 50.000 0.00 0.00 0.00 4.30
152 153 2.039879 GGTAGCAGAAAAACTCCCCTCA 59.960 50.000 0.00 0.00 0.00 3.86
153 154 3.308473 GGTAGCAGAAAAACTCCCCTCAT 60.308 47.826 0.00 0.00 0.00 2.90
154 155 4.080526 GGTAGCAGAAAAACTCCCCTCATA 60.081 45.833 0.00 0.00 0.00 2.15
155 156 4.227864 AGCAGAAAAACTCCCCTCATAG 57.772 45.455 0.00 0.00 0.00 2.23
157 158 4.289672 AGCAGAAAAACTCCCCTCATAGAA 59.710 41.667 0.00 0.00 0.00 2.10
158 159 5.044550 AGCAGAAAAACTCCCCTCATAGAAT 60.045 40.000 0.00 0.00 0.00 2.40
159 160 6.158695 AGCAGAAAAACTCCCCTCATAGAATA 59.841 38.462 0.00 0.00 0.00 1.75
160 161 6.828785 GCAGAAAAACTCCCCTCATAGAATAA 59.171 38.462 0.00 0.00 0.00 1.40
161 162 7.201741 GCAGAAAAACTCCCCTCATAGAATAAC 60.202 40.741 0.00 0.00 0.00 1.89
162 163 8.049721 CAGAAAAACTCCCCTCATAGAATAACT 58.950 37.037 0.00 0.00 0.00 2.24
163 164 9.280456 AGAAAAACTCCCCTCATAGAATAACTA 57.720 33.333 0.00 0.00 35.42 2.24
170 173 9.907229 CTCCCCTCATAGAATAACTAAACTTTT 57.093 33.333 0.00 0.00 34.56 2.27
218 221 9.793259 AGACTTATGAAAAGTCAAATAACTCCA 57.207 29.630 17.49 0.00 46.78 3.86
229 232 9.995003 AAGTCAAATAACTCCAAATGCAATTTA 57.005 25.926 0.00 0.00 46.64 1.40
238 241 9.729281 AACTCCAAATGCAATTTAAATCAAGAT 57.271 25.926 0.10 0.00 46.64 2.40
279 284 0.040514 TTGTTGTGCTCAAATCGCCG 60.041 50.000 2.18 0.00 35.20 6.46
283 288 0.037697 TGTGCTCAAATCGCCGTACT 60.038 50.000 0.00 0.00 0.00 2.73
295 300 3.508762 TCGCCGTACTTTTCTTCATCTC 58.491 45.455 0.00 0.00 0.00 2.75
297 302 3.676324 CGCCGTACTTTTCTTCATCTCCT 60.676 47.826 0.00 0.00 0.00 3.69
310 315 8.948631 TTCTTCATCTCCTATTGTAATGACAC 57.051 34.615 0.00 0.00 34.48 3.67
311 316 8.078060 TCTTCATCTCCTATTGTAATGACACA 57.922 34.615 0.00 0.00 34.48 3.72
312 317 8.539544 TCTTCATCTCCTATTGTAATGACACAA 58.460 33.333 0.00 0.00 42.32 3.33
313 318 8.492673 TTCATCTCCTATTGTAATGACACAAC 57.507 34.615 0.00 0.00 41.02 3.32
316 321 3.936453 TCCTATTGTAATGACACAACGGC 59.064 43.478 0.00 0.00 41.02 5.68
319 324 4.782019 ATTGTAATGACACAACGGCATT 57.218 36.364 0.00 0.00 41.02 3.56
323 328 1.896220 ATGACACAACGGCATTCAGT 58.104 45.000 0.00 0.00 0.00 3.41
333 345 2.083774 CGGCATTCAGTTACACACCAT 58.916 47.619 0.00 0.00 0.00 3.55
348 360 5.531634 ACACACCATGCAATTAGTCAAAAG 58.468 37.500 0.00 0.00 0.00 2.27
349 361 5.301551 ACACACCATGCAATTAGTCAAAAGA 59.698 36.000 0.00 0.00 0.00 2.52
350 362 6.183360 ACACACCATGCAATTAGTCAAAAGAA 60.183 34.615 0.00 0.00 0.00 2.52
351 363 6.700960 CACACCATGCAATTAGTCAAAAGAAA 59.299 34.615 0.00 0.00 0.00 2.52
352 364 6.701400 ACACCATGCAATTAGTCAAAAGAAAC 59.299 34.615 0.00 0.00 0.00 2.78
353 365 6.146021 CACCATGCAATTAGTCAAAAGAAACC 59.854 38.462 0.00 0.00 0.00 3.27
354 366 6.183360 ACCATGCAATTAGTCAAAAGAAACCA 60.183 34.615 0.00 0.00 0.00 3.67
355 367 6.146021 CCATGCAATTAGTCAAAAGAAACCAC 59.854 38.462 0.00 0.00 0.00 4.16
356 368 6.463995 TGCAATTAGTCAAAAGAAACCACT 57.536 33.333 0.00 0.00 0.00 4.00
358 370 8.001881 TGCAATTAGTCAAAAGAAACCACTAA 57.998 30.769 0.00 0.00 34.80 2.24
359 371 8.470805 TGCAATTAGTCAAAAGAAACCACTAAA 58.529 29.630 0.00 0.00 34.18 1.85
395 428 6.867293 AGTTCGTGAACCTAAATGAACTAGAC 59.133 38.462 9.03 0.00 46.05 2.59
396 429 6.585695 TCGTGAACCTAAATGAACTAGACT 57.414 37.500 0.00 0.00 0.00 3.24
421 458 9.766277 CTGACAAGTAAAGCAATTCTAGAATTC 57.234 33.333 24.72 18.91 38.84 2.17
429 466 7.856145 AAGCAATTCTAGAATTCTAGTGTGG 57.144 36.000 31.97 22.63 44.74 4.17
449 487 5.783360 TGTGGTTTCTCCTCAGGTAATAAGA 59.217 40.000 0.00 0.00 35.16 2.10
451 489 5.783360 TGGTTTCTCCTCAGGTAATAAGACA 59.217 40.000 0.00 0.00 37.07 3.41
463 501 9.083422 TCAGGTAATAAGACATATCTTCTCTGG 57.917 37.037 0.00 0.00 41.63 3.86
469 507 8.971032 ATAAGACATATCTTCTCTGGGAGAAT 57.029 34.615 9.92 0.72 45.84 2.40
550 588 5.632959 AGAACAAATGTTTCGTTTCGACAA 58.367 33.333 0.00 0.00 38.56 3.18
551 589 6.262601 AGAACAAATGTTTCGTTTCGACAAT 58.737 32.000 0.00 0.00 38.56 2.71
615 653 9.157104 ACAATTTCGTCATAACTTTTGGTTTTT 57.843 25.926 0.00 0.00 39.17 1.94
688 726 9.816787 TTAGGGGAATTTGTTTTACAGTCTAAT 57.183 29.630 0.00 0.00 0.00 1.73
690 728 8.803235 AGGGGAATTTGTTTTACAGTCTAATTC 58.197 33.333 0.00 0.00 34.87 2.17
714 753 3.908103 TCCAAGACAAACTAGGGCTTAGT 59.092 43.478 3.07 3.07 44.55 2.24
723 762 2.026169 ACTAGGGCTTAGTTTGGGCTTC 60.026 50.000 3.07 0.00 39.64 3.86
891 934 1.291877 CTTTCACCAGCCGTTCTCCG 61.292 60.000 0.00 0.00 0.00 4.63
931 995 5.280499 CTCCCCCTTCCCTCAAAAATAAAT 58.720 41.667 0.00 0.00 0.00 1.40
934 998 7.257146 TCCCCCTTCCCTCAAAAATAAATAAA 58.743 34.615 0.00 0.00 0.00 1.40
982 1047 2.659063 CCCACCACCGCAGAGATCA 61.659 63.158 0.00 0.00 0.00 2.92
1049 1114 2.268920 GGCGAGCCAGTCCATGAA 59.731 61.111 9.58 0.00 35.81 2.57
1223 1290 1.340405 GGATCTGGGAGCTTTGCTTGA 60.340 52.381 0.00 0.00 39.88 3.02
1310 1378 2.507992 GCGATCTGCGAGCAGTGT 60.508 61.111 22.47 13.70 44.57 3.55
1344 1412 5.782047 TGGTCTGTAATTGAGCAATTTTGG 58.218 37.500 13.05 5.07 40.99 3.28
1351 1419 5.796424 AATTGAGCAATTTTGGTGTCTCT 57.204 34.783 2.74 0.00 37.74 3.10
1374 1453 3.378742 TGTCGTTAGTTTGCACAAATGGT 59.621 39.130 0.00 0.00 32.36 3.55
1414 1502 1.556911 AGATGTGGAGAATTCGGTGCT 59.443 47.619 0.00 0.00 0.00 4.40
1452 1541 2.159379 GGGATTTCAGAAATGTGCGTCC 60.159 50.000 13.38 7.66 0.00 4.79
1650 1739 2.596346 TCATGTGACCTGTTGCCATTT 58.404 42.857 0.00 0.00 0.00 2.32
1730 1819 1.327303 TGAATGCGGAAAAACTGGCT 58.673 45.000 0.00 0.00 0.00 4.75
1801 1892 5.010282 CCCCTAGCTCTATTTTGTTGTTGT 58.990 41.667 0.00 0.00 0.00 3.32
1802 1893 5.476945 CCCCTAGCTCTATTTTGTTGTTGTT 59.523 40.000 0.00 0.00 0.00 2.83
1803 1894 6.381801 CCCTAGCTCTATTTTGTTGTTGTTG 58.618 40.000 0.00 0.00 0.00 3.33
1804 1895 6.381801 CCTAGCTCTATTTTGTTGTTGTTGG 58.618 40.000 0.00 0.00 0.00 3.77
1824 2012 1.205417 GAATTGCAACCAGTGGGATGG 59.795 52.381 15.21 0.52 46.47 3.51
1832 2020 0.465097 CCAGTGGGATGGTGAGCATC 60.465 60.000 15.79 15.79 35.47 3.91
1848 2036 4.518970 TGAGCATCCACCTACTTTTGTTTC 59.481 41.667 0.00 0.00 0.00 2.78
1851 2039 3.564053 TCCACCTACTTTTGTTTCGGT 57.436 42.857 0.00 0.00 0.00 4.69
1853 2041 3.118334 TCCACCTACTTTTGTTTCGGTGA 60.118 43.478 7.75 0.00 41.91 4.02
1854 2042 3.818773 CCACCTACTTTTGTTTCGGTGAT 59.181 43.478 7.75 0.00 41.91 3.06
1855 2043 4.998672 CCACCTACTTTTGTTTCGGTGATA 59.001 41.667 7.75 0.00 41.91 2.15
1915 2103 1.548269 GTCTAGTCAAGGTGCTCTGCT 59.452 52.381 0.00 0.00 0.00 4.24
1916 2104 1.547820 TCTAGTCAAGGTGCTCTGCTG 59.452 52.381 0.00 0.00 0.00 4.41
1918 2106 0.982704 AGTCAAGGTGCTCTGCTGAT 59.017 50.000 0.00 0.00 0.00 2.90
1919 2107 2.182827 AGTCAAGGTGCTCTGCTGATA 58.817 47.619 0.00 0.00 0.00 2.15
1920 2108 2.093764 AGTCAAGGTGCTCTGCTGATAC 60.094 50.000 0.00 0.00 0.00 2.24
1921 2109 1.208052 TCAAGGTGCTCTGCTGATACC 59.792 52.381 15.21 15.21 32.68 2.73
1922 2110 1.209019 CAAGGTGCTCTGCTGATACCT 59.791 52.381 18.20 18.20 39.67 3.08
1936 2124 5.297527 TGCTGATACCTGTGAAAGCATTATG 59.702 40.000 0.00 0.00 35.84 1.90
1943 2131 4.082274 TGTGAAAGCATTATGTGAAGCG 57.918 40.909 0.00 0.00 0.00 4.68
1974 2162 8.492673 TCTTCATTGCTTTAACTACTGTATGG 57.507 34.615 0.00 0.00 0.00 2.74
2259 4278 6.578944 TCTGCTAGAACAAAACAGACTGTTA 58.421 36.000 20.85 3.09 40.14 2.41
2362 4381 4.771114 TGTTATCTGATGTTGTAGGGGG 57.229 45.455 0.00 0.00 0.00 5.40
2429 4448 5.659440 TTTCTTCTGTGTGGCTTCTTTTT 57.341 34.783 0.00 0.00 0.00 1.94
2485 4504 2.923020 CACAGTTGTCAAGCACAAAACC 59.077 45.455 0.00 0.00 46.90 3.27
2593 4612 6.403866 TCATGTTTCCAAATTACTTGCAGT 57.596 33.333 0.00 0.00 33.27 4.40
2642 4661 8.170553 GCATGCTTTGAATAGGTTACATTTTTG 58.829 33.333 11.37 0.00 0.00 2.44
2684 4703 3.801050 GCTGTGTCATCTATGTGTAGCTG 59.199 47.826 0.00 0.00 0.00 4.24
2692 4711 4.486125 TCTATGTGTAGCTGATTTGCCA 57.514 40.909 0.00 0.00 0.00 4.92
2789 4808 4.001652 CAGGTTGCTATATCTCATGGCAG 58.998 47.826 0.00 0.00 34.37 4.85
2919 4938 6.305877 CCTATGTATCTCGAAAATGAGTACGC 59.694 42.308 0.00 0.00 37.28 4.42
3026 5045 2.025037 TCTGAGTTTACCGCCCTAGGTA 60.025 50.000 8.29 0.00 43.89 3.08
3042 5061 7.767659 CGCCCTAGGTACCCTTTATTATATTTC 59.232 40.741 8.74 0.00 34.61 2.17
3524 8078 5.194432 TCACTTAGTCCCTGAGATGTAGAC 58.806 45.833 0.00 0.00 0.00 2.59
3692 8246 2.171079 AATGCGACACGGGTATGCG 61.171 57.895 9.65 1.52 32.67 4.73
3783 8337 8.826710 GCTTGTATTGTAGCACTTGATATGTTA 58.173 33.333 0.00 0.00 37.35 2.41
3814 8368 5.482908 TCTGGCTGTATCTTCTGAAAAGTC 58.517 41.667 0.00 0.00 0.00 3.01
3957 8511 7.230510 TGTTCAACATTGTTAGTCCATAAGCTT 59.769 33.333 3.48 3.48 0.00 3.74
3960 8514 7.334421 TCAACATTGTTAGTCCATAAGCTTCTC 59.666 37.037 0.00 0.00 0.00 2.87
4046 8601 7.941919 TGTGAGGAATATGTCACTATGTAGTC 58.058 38.462 12.11 0.00 43.03 2.59
4057 8614 6.183360 TGTCACTATGTAGTCCACTCATCATG 60.183 42.308 0.00 0.00 33.46 3.07
4109 8666 6.975197 GCTTCTTACCATTATTTGCTTCCTTC 59.025 38.462 0.00 0.00 0.00 3.46
4171 8728 0.825425 TTGGTTCATGGGCTTTCGCA 60.825 50.000 0.00 0.00 39.56 5.10
4281 8839 5.186797 TGGTGAGTCTTTGGATGTTTTTGTT 59.813 36.000 0.00 0.00 0.00 2.83
4328 8886 7.649533 TCTGGATTCATATGATGCAAAGTTT 57.350 32.000 6.17 0.00 0.00 2.66
4338 8896 3.255642 TGATGCAAAGTTTCTAACTGGGC 59.744 43.478 0.00 8.09 41.91 5.36
4368 8926 5.964477 ACTTCCTGGAGATACTGAACCAATA 59.036 40.000 0.00 0.00 31.85 1.90
4425 8983 2.773993 CCAAAAGATGGGCATGCTTT 57.226 45.000 18.92 6.85 46.27 3.51
4706 9274 7.979786 TCAATTCTCTAGACTAATGTTCCCT 57.020 36.000 0.00 0.00 0.00 4.20
4834 9402 5.227152 ACTTTCCGCAACCATATGTTTTTC 58.773 37.500 1.24 0.00 34.00 2.29
4869 9437 4.631813 CCTTGCACTATTCTGGTTGTAGTC 59.368 45.833 0.00 0.00 0.00 2.59
4885 9453 3.382546 TGTAGTCGGTAGTGATAAAGGGC 59.617 47.826 0.00 0.00 0.00 5.19
4898 9466 4.843516 TGATAAAGGGCCTGTTTCCAAAAT 59.156 37.500 6.92 0.00 0.00 1.82
4963 9531 6.857777 ACTTTGTCAAGATTGAGAAGTCAG 57.142 37.500 14.09 8.72 40.81 3.51
5100 9668 1.004918 CTTCGTCAAGAGGGCGGTT 60.005 57.895 0.00 0.00 0.00 4.44
5167 9735 3.507233 CACTTACACTGACCATTTGGCAT 59.493 43.478 0.00 0.00 39.32 4.40
5171 9739 3.966979 ACACTGACCATTTGGCATATCA 58.033 40.909 0.00 0.00 39.32 2.15
5198 9767 1.134907 CCGCGGTACATAAGAGGTTGT 60.135 52.381 19.50 0.00 0.00 3.32
5199 9768 2.613691 CGCGGTACATAAGAGGTTGTT 58.386 47.619 0.00 0.00 0.00 2.83
5244 9834 6.382282 GGGTAGATACTTAGGTAAGTTGGTGT 59.618 42.308 7.68 0.00 43.57 4.16
5323 9913 1.193874 GTTTGGCGAAACTGACTACGG 59.806 52.381 16.14 0.00 38.78 4.02
5346 9936 5.923684 GGACTGATTGCTCTTGTATACTAGC 59.076 44.000 9.20 12.33 35.51 3.42
5347 9937 6.461648 GGACTGATTGCTCTTGTATACTAGCA 60.462 42.308 18.22 18.22 42.91 3.49
5348 9938 6.276847 ACTGATTGCTCTTGTATACTAGCAC 58.723 40.000 20.49 13.92 44.19 4.40
5349 9939 6.097554 ACTGATTGCTCTTGTATACTAGCACT 59.902 38.462 20.49 17.11 44.19 4.40
5350 9940 6.276091 TGATTGCTCTTGTATACTAGCACTG 58.724 40.000 20.49 8.77 44.19 3.66
5351 9941 5.661056 TTGCTCTTGTATACTAGCACTGT 57.339 39.130 20.49 0.00 44.19 3.55
5352 9942 5.661056 TGCTCTTGTATACTAGCACTGTT 57.339 39.130 18.22 0.00 39.92 3.16
5353 9943 5.651530 TGCTCTTGTATACTAGCACTGTTC 58.348 41.667 18.22 2.66 39.92 3.18
5354 9944 5.044558 GCTCTTGTATACTAGCACTGTTCC 58.955 45.833 15.91 0.00 35.05 3.62
5355 9945 5.394224 GCTCTTGTATACTAGCACTGTTCCA 60.394 44.000 15.91 0.00 35.05 3.53
5356 9946 6.684111 GCTCTTGTATACTAGCACTGTTCCAT 60.684 42.308 15.91 0.00 35.05 3.41
5357 9947 7.470147 GCTCTTGTATACTAGCACTGTTCCATA 60.470 40.741 15.91 0.00 35.05 2.74
5358 9948 7.713750 TCTTGTATACTAGCACTGTTCCATAC 58.286 38.462 9.20 0.00 0.00 2.39
5359 9949 7.340999 TCTTGTATACTAGCACTGTTCCATACA 59.659 37.037 9.20 0.00 34.95 2.29
5371 9961 4.913784 TGTTCCATACAGTTCTTAACCCC 58.086 43.478 0.00 0.00 31.68 4.95
5372 9962 4.600111 TGTTCCATACAGTTCTTAACCCCT 59.400 41.667 0.00 0.00 31.68 4.79
5373 9963 5.073965 TGTTCCATACAGTTCTTAACCCCTT 59.926 40.000 0.00 0.00 31.68 3.95
5374 9964 5.853572 TCCATACAGTTCTTAACCCCTTT 57.146 39.130 0.00 0.00 0.00 3.11
5375 9965 5.566469 TCCATACAGTTCTTAACCCCTTTG 58.434 41.667 0.00 0.00 0.00 2.77
5376 9966 4.705023 CCATACAGTTCTTAACCCCTTTGG 59.295 45.833 0.00 0.00 41.37 3.28
5405 9995 0.263172 TCCCCTTGTTTTCTGCCCAA 59.737 50.000 0.00 0.00 0.00 4.12
5418 10008 2.378547 TCTGCCCAAAATGTACCCTTCT 59.621 45.455 0.00 0.00 0.00 2.85
5419 10009 2.493278 CTGCCCAAAATGTACCCTTCTG 59.507 50.000 0.00 0.00 0.00 3.02
5420 10010 2.109128 TGCCCAAAATGTACCCTTCTGA 59.891 45.455 0.00 0.00 0.00 3.27
5431 10023 3.756082 ACCCTTCTGATTGGCCATAAA 57.244 42.857 6.09 0.00 0.00 1.40
5437 10029 6.126968 CCCTTCTGATTGGCCATAAAAAGAAT 60.127 38.462 6.09 0.00 0.00 2.40
5449 10041 6.290605 CCATAAAAAGAATATTGGCCCTTGG 58.709 40.000 0.00 0.00 0.00 3.61
5465 10057 5.442391 GCCCTTGGTTGTACTTTGGATATA 58.558 41.667 0.00 0.00 0.00 0.86
5559 10154 7.712264 TTGATAGCCAAAATTTGAACTTGTG 57.288 32.000 7.37 0.00 0.00 3.33
5581 10176 4.184629 GTTGGGTTCTCATAGTACTGCTG 58.815 47.826 5.39 3.25 0.00 4.41
5672 10268 4.454728 TGCTCAAAAGGGTTTATGCATC 57.545 40.909 0.19 0.00 32.63 3.91
5851 10455 3.427098 CGGCGATCACTAGTACACTTCAA 60.427 47.826 0.00 0.00 0.00 2.69
5863 10467 3.374220 ACACTTCAATGTTGGCATGTG 57.626 42.857 0.00 0.00 35.15 3.21
5938 10545 4.442706 GGAAAATCAGAGGAAGCGTATCA 58.557 43.478 0.00 0.00 0.00 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.025226 TCCACCAGTACCTTCTCGATCT 60.025 50.000 0.00 0.00 0.00 2.75
1 2 2.359531 CTCCACCAGTACCTTCTCGATC 59.640 54.545 0.00 0.00 0.00 3.69
2 3 2.291670 ACTCCACCAGTACCTTCTCGAT 60.292 50.000 0.00 0.00 31.37 3.59
3 4 1.075050 ACTCCACCAGTACCTTCTCGA 59.925 52.381 0.00 0.00 31.37 4.04
4 5 1.546961 ACTCCACCAGTACCTTCTCG 58.453 55.000 0.00 0.00 31.37 4.04
5 6 2.897969 TGAACTCCACCAGTACCTTCTC 59.102 50.000 0.00 0.00 32.30 2.87
6 7 2.972348 TGAACTCCACCAGTACCTTCT 58.028 47.619 0.00 0.00 32.30 2.85
7 8 3.983044 ATGAACTCCACCAGTACCTTC 57.017 47.619 0.00 0.00 32.30 3.46
8 9 3.394606 ACAATGAACTCCACCAGTACCTT 59.605 43.478 0.00 0.00 32.30 3.50
9 10 2.979678 ACAATGAACTCCACCAGTACCT 59.020 45.455 0.00 0.00 32.30 3.08
10 11 3.074412 CACAATGAACTCCACCAGTACC 58.926 50.000 0.00 0.00 32.30 3.34
11 12 3.740115 ACACAATGAACTCCACCAGTAC 58.260 45.455 0.00 0.00 32.30 2.73
12 13 4.385825 GAACACAATGAACTCCACCAGTA 58.614 43.478 0.00 0.00 32.30 2.74
13 14 3.214328 GAACACAATGAACTCCACCAGT 58.786 45.455 0.00 0.00 36.64 4.00
14 15 2.224079 CGAACACAATGAACTCCACCAG 59.776 50.000 0.00 0.00 0.00 4.00
15 16 2.217750 CGAACACAATGAACTCCACCA 58.782 47.619 0.00 0.00 0.00 4.17
16 17 1.069227 GCGAACACAATGAACTCCACC 60.069 52.381 0.00 0.00 0.00 4.61
17 18 1.873591 AGCGAACACAATGAACTCCAC 59.126 47.619 0.00 0.00 0.00 4.02
32 33 8.735315 TCCATTTAACTCATAATTTGAAGCGAA 58.265 29.630 0.00 0.00 32.78 4.70
46 47 8.690884 TGAATTTTGTCAACTCCATTTAACTCA 58.309 29.630 0.00 0.00 0.00 3.41
53 54 9.829507 TTTGTAATGAATTTTGTCAACTCCATT 57.170 25.926 0.00 0.00 0.00 3.16
71 72 9.831737 CTTCCTAGAACAACATCTTTTGTAATG 57.168 33.333 0.00 0.00 38.82 1.90
76 77 6.486657 TGTCCTTCCTAGAACAACATCTTTTG 59.513 38.462 0.00 0.00 0.00 2.44
86 87 1.902508 CTGGCTGTCCTTCCTAGAACA 59.097 52.381 0.00 0.00 0.00 3.18
88 89 1.573108 CCTGGCTGTCCTTCCTAGAA 58.427 55.000 0.00 0.00 0.00 2.10
92 93 2.208349 ACCCTGGCTGTCCTTCCT 59.792 61.111 0.00 0.00 0.00 3.36
104 105 1.825191 CATGGCCGATTCCACCCTG 60.825 63.158 0.00 0.00 39.25 4.45
132 133 3.418684 TGAGGGGAGTTTTTCTGCTAC 57.581 47.619 0.00 0.00 34.83 3.58
181 184 9.640963 GACTTTTCATAAGTCTTAGCTCTGTTA 57.359 33.333 9.73 0.00 42.44 2.41
200 203 7.945033 TGCATTTGGAGTTATTTGACTTTTC 57.055 32.000 0.00 0.00 0.00 2.29
243 246 7.647715 AGCACAACAAAATACTTGTCAACATAC 59.352 33.333 0.00 0.00 0.00 2.39
252 255 6.614162 GCGATTTGAGCACAACAAAATACTTG 60.614 38.462 0.00 0.00 39.95 3.16
263 266 0.793861 GTACGGCGATTTGAGCACAA 59.206 50.000 16.62 0.00 36.08 3.33
264 267 0.037697 AGTACGGCGATTTGAGCACA 60.038 50.000 16.62 0.00 36.08 4.57
283 288 9.958180 TGTCATTACAATAGGAGATGAAGAAAA 57.042 29.630 0.00 0.00 30.91 2.29
295 300 3.687212 TGCCGTTGTGTCATTACAATAGG 59.313 43.478 0.00 0.00 42.02 2.57
297 302 5.412904 TGAATGCCGTTGTGTCATTACAATA 59.587 36.000 0.00 0.00 42.02 1.90
307 312 2.289547 GTGTAACTGAATGCCGTTGTGT 59.710 45.455 0.00 0.00 0.00 3.72
310 315 2.350388 GGTGTGTAACTGAATGCCGTTG 60.350 50.000 0.00 0.00 38.04 4.10
311 316 1.877443 GGTGTGTAACTGAATGCCGTT 59.123 47.619 0.00 0.00 38.04 4.44
312 317 1.202710 TGGTGTGTAACTGAATGCCGT 60.203 47.619 0.00 0.00 38.04 5.68
313 318 1.518325 TGGTGTGTAACTGAATGCCG 58.482 50.000 0.00 0.00 38.04 5.69
316 321 4.502171 TTGCATGGTGTGTAACTGAATG 57.498 40.909 0.00 0.00 38.04 2.67
319 324 5.312895 ACTAATTGCATGGTGTGTAACTGA 58.687 37.500 0.00 0.00 35.19 3.41
323 328 6.641169 TTTGACTAATTGCATGGTGTGTAA 57.359 33.333 0.00 0.00 36.84 2.41
333 345 6.463995 AGTGGTTTCTTTTGACTAATTGCA 57.536 33.333 0.00 0.00 0.00 4.08
361 373 9.840427 CATTTAGGTTCACGAACTTTGATAATT 57.160 29.630 9.63 0.00 40.94 1.40
362 374 9.226606 TCATTTAGGTTCACGAACTTTGATAAT 57.773 29.630 9.63 0.00 40.94 1.28
365 377 7.228706 AGTTCATTTAGGTTCACGAACTTTGAT 59.771 33.333 9.63 0.00 39.93 2.57
366 378 6.540914 AGTTCATTTAGGTTCACGAACTTTGA 59.459 34.615 9.63 1.20 39.93 2.69
371 404 6.867293 AGTCTAGTTCATTTAGGTTCACGAAC 59.133 38.462 1.12 1.12 40.45 3.95
374 407 6.308282 GTCAGTCTAGTTCATTTAGGTTCACG 59.692 42.308 0.00 0.00 0.00 4.35
395 428 9.766277 GAATTCTAGAATTGCTTTACTTGTCAG 57.234 33.333 30.65 0.00 40.77 3.51
396 429 9.507329 AGAATTCTAGAATTGCTTTACTTGTCA 57.493 29.630 30.65 0.00 40.77 3.58
421 458 2.900546 ACCTGAGGAGAAACCACACTAG 59.099 50.000 4.99 0.00 42.04 2.57
429 466 9.699703 GATATGTCTTATTACCTGAGGAGAAAC 57.300 37.037 4.99 0.00 0.00 2.78
583 621 8.843733 CAAAAGTTATGACGAAATTGTGATGAG 58.156 33.333 0.00 0.00 0.00 2.90
584 622 7.807433 CCAAAAGTTATGACGAAATTGTGATGA 59.193 33.333 0.00 0.00 0.00 2.92
587 625 7.033530 ACCAAAAGTTATGACGAAATTGTGA 57.966 32.000 0.00 0.00 0.00 3.58
588 626 7.692908 AACCAAAAGTTATGACGAAATTGTG 57.307 32.000 0.00 0.00 36.74 3.33
597 635 9.811995 AAAGGAGTAAAAACCAAAAGTTATGAC 57.188 29.630 0.00 0.00 37.88 3.06
600 638 7.713507 GGCAAAGGAGTAAAAACCAAAAGTTAT 59.286 33.333 0.00 0.00 37.88 1.89
688 726 2.549349 GCCCTAGTTTGTCTTGGACGAA 60.549 50.000 0.00 0.00 40.60 3.85
690 728 1.002087 AGCCCTAGTTTGTCTTGGACG 59.998 52.381 0.00 0.00 40.60 4.79
736 775 3.721087 AAATTCGTGGGAGATGGAGTT 57.279 42.857 0.00 0.00 0.00 3.01
738 777 3.733337 CCTAAATTCGTGGGAGATGGAG 58.267 50.000 0.00 0.00 0.00 3.86
740 779 2.222027 GCCTAAATTCGTGGGAGATGG 58.778 52.381 0.00 0.00 0.00 3.51
741 780 2.158755 AGGCCTAAATTCGTGGGAGATG 60.159 50.000 1.29 0.00 0.00 2.90
742 781 2.127708 AGGCCTAAATTCGTGGGAGAT 58.872 47.619 1.29 0.00 0.00 2.75
744 783 3.553828 TTAGGCCTAAATTCGTGGGAG 57.446 47.619 23.21 0.00 0.00 4.30
745 784 4.263594 ACTTTTAGGCCTAAATTCGTGGGA 60.264 41.667 33.16 17.68 35.27 4.37
934 998 8.742437 TGGGGGAGGACAGAATTATTTATTTAT 58.258 33.333 0.00 0.00 0.00 1.40
947 1011 2.450243 GAGGTGGGGGAGGACAGA 59.550 66.667 0.00 0.00 0.00 3.41
948 1012 2.689034 GGAGGTGGGGGAGGACAG 60.689 72.222 0.00 0.00 0.00 3.51
1049 1114 3.111939 CGAGGATCTCGCGGTTCT 58.888 61.111 6.13 0.00 46.75 3.01
1223 1290 4.704540 TCAGCATCCAAACCGATAAAACAT 59.295 37.500 0.00 0.00 0.00 2.71
1310 1378 8.296713 GCTCAATTACAGACCAAACTATCAAAA 58.703 33.333 0.00 0.00 0.00 2.44
1344 1412 3.554324 TGCAAACTAACGACAAGAGACAC 59.446 43.478 0.00 0.00 0.00 3.67
1351 1419 4.142359 ACCATTTGTGCAAACTAACGACAA 60.142 37.500 0.00 0.00 32.51 3.18
1414 1502 1.358787 TCCCGGTCCTTACTACTTCCA 59.641 52.381 0.00 0.00 0.00 3.53
1452 1541 3.302365 AAGCATCACGGGTCAAAATTG 57.698 42.857 0.00 0.00 0.00 2.32
1730 1819 9.651913 GAACAATTTAAGAAATGCCTATTGGAA 57.348 29.630 0.00 0.00 34.57 3.53
1759 1848 1.404391 GGGCAATGTCATCTCTTGCAG 59.596 52.381 10.26 0.00 45.44 4.41
1770 1859 1.424638 TAGAGCTAGGGGGCAATGTC 58.575 55.000 0.00 0.00 34.17 3.06
1801 1892 1.047002 CCCACTGGTTGCAATTCCAA 58.953 50.000 0.59 0.00 33.06 3.53
1802 1893 0.187117 TCCCACTGGTTGCAATTCCA 59.813 50.000 0.59 5.41 0.00 3.53
1803 1894 1.205417 CATCCCACTGGTTGCAATTCC 59.795 52.381 0.59 0.00 0.00 3.01
1804 1895 1.205417 CCATCCCACTGGTTGCAATTC 59.795 52.381 0.59 0.00 31.09 2.17
1824 2012 3.412386 ACAAAAGTAGGTGGATGCTCAC 58.588 45.455 0.00 0.00 36.95 3.51
1832 2020 3.207778 TCACCGAAACAAAAGTAGGTGG 58.792 45.455 11.81 0.00 46.45 4.61
1848 2036 5.858475 GAATTCCGCATTCTATTATCACCG 58.142 41.667 0.00 0.00 38.69 4.94
1915 2103 6.413892 TCACATAATGCTTTCACAGGTATCA 58.586 36.000 0.00 0.00 0.00 2.15
1916 2104 6.925610 TCACATAATGCTTTCACAGGTATC 57.074 37.500 0.00 0.00 0.00 2.24
1918 2106 5.123820 GCTTCACATAATGCTTTCACAGGTA 59.876 40.000 0.00 0.00 0.00 3.08
1919 2107 4.082571 GCTTCACATAATGCTTTCACAGGT 60.083 41.667 0.00 0.00 0.00 4.00
1920 2108 4.418392 GCTTCACATAATGCTTTCACAGG 58.582 43.478 0.00 0.00 0.00 4.00
1921 2109 4.093514 CGCTTCACATAATGCTTTCACAG 58.906 43.478 0.00 0.00 0.00 3.66
1922 2110 3.750652 TCGCTTCACATAATGCTTTCACA 59.249 39.130 0.00 0.00 0.00 3.58
1943 2131 7.748241 CAGTAGTTAAAGCAATGAAGAAAGCTC 59.252 37.037 0.00 0.00 36.07 4.09
2098 2286 8.223330 AGCAAAGGTGGATATAATCAGAAAGAT 58.777 33.333 0.00 0.00 39.09 2.40
2259 4278 9.840427 CATTGTAAAATACGGAAGAGAACAAAT 57.160 29.630 0.00 0.00 0.00 2.32
2362 4381 2.542595 GCAATAGAATGCATTTGCTGGC 59.457 45.455 21.21 15.35 45.70 4.85
2429 4448 6.765989 GTGAATGCTATAGTGGTTGTCCATAA 59.234 38.462 0.84 0.00 46.20 1.90
2485 4504 4.002982 TGAATCCAAACTCCTCAACATCG 58.997 43.478 0.00 0.00 0.00 3.84
2593 4612 3.935818 TTTAACTGGTTGGACAGGTCA 57.064 42.857 1.41 0.00 42.75 4.02
2642 4661 7.649306 ACACAGCTATGAATTTGTGAAGTTTTC 59.351 33.333 11.62 0.00 42.61 2.29
2919 4938 1.203052 AGGCCAGCAAATGAAATCACG 59.797 47.619 5.01 0.00 0.00 4.35
3026 5045 8.502047 ACTAGTCCGGAAATATAATAAAGGGT 57.498 34.615 5.23 0.00 0.00 4.34
3500 8054 5.830991 GTCTACATCTCAGGGACTAAGTGAT 59.169 44.000 0.00 0.00 36.02 3.06
3692 8246 5.062558 ACAGTTAACAGAACGTGTGTTGTAC 59.937 40.000 21.17 18.12 40.26 2.90
3783 8337 4.163839 AGAAGATACAGCCAGAAAGAGCAT 59.836 41.667 0.00 0.00 0.00 3.79
3814 8368 8.131100 CCAACAGCCATCTACAAATTAACATAG 58.869 37.037 0.00 0.00 0.00 2.23
4010 8565 7.611467 TGACATATTCCTCACAATAAAAGCAGT 59.389 33.333 0.00 0.00 0.00 4.40
4046 8601 4.275196 CCAAAGTAGCATCATGATGAGTGG 59.725 45.833 34.65 24.58 41.20 4.00
4057 8614 3.059352 AGGACACACCAAAGTAGCATC 57.941 47.619 0.00 0.00 42.04 3.91
4109 8666 2.014128 CCACCGGTTAAATGCCTACAG 58.986 52.381 2.97 0.00 0.00 2.74
4171 8728 4.517285 AGTCATACAGGCGATTGATTGTT 58.483 39.130 0.00 0.00 0.00 2.83
4281 8839 7.984050 CAGAAGCATCTAGTCTAAGAATGGAAA 59.016 37.037 0.00 0.00 33.50 3.13
4328 8886 2.494870 GGAAGTACGAAGCCCAGTTAGA 59.505 50.000 0.00 0.00 0.00 2.10
4338 8896 4.882427 TCAGTATCTCCAGGAAGTACGAAG 59.118 45.833 0.00 0.00 0.00 3.79
4368 8926 9.773328 CAATAGAATGACAAAACGATAACATGT 57.227 29.630 0.00 0.00 0.00 3.21
4529 9090 3.996363 GCCTGTTTTGATGGTGGATTTTC 59.004 43.478 0.00 0.00 0.00 2.29
4869 9437 1.485066 ACAGGCCCTTTATCACTACCG 59.515 52.381 0.00 0.00 0.00 4.02
4963 9531 3.080319 AGAGGTCAGCTCATTTTCTTGC 58.920 45.455 6.64 0.00 0.00 4.01
5007 9575 6.599437 ACTCGCATTGTTGTTTCTGTTATAC 58.401 36.000 0.00 0.00 0.00 1.47
5167 9735 0.457035 GTACCGCGGACAACCTGATA 59.543 55.000 35.90 7.27 0.00 2.15
5171 9739 0.896923 TTATGTACCGCGGACAACCT 59.103 50.000 35.90 20.32 0.00 3.50
5198 9767 4.324254 CCCACTGTTGGCTATCTCCTAAAA 60.324 45.833 0.00 0.00 42.35 1.52
5199 9768 3.199946 CCCACTGTTGGCTATCTCCTAAA 59.800 47.826 0.00 0.00 42.35 1.85
5244 9834 0.885196 GGCAAGAATAACGGCAACCA 59.115 50.000 0.00 0.00 0.00 3.67
5323 9913 6.419413 GTGCTAGTATACAAGAGCAATCAGTC 59.581 42.308 21.62 10.00 45.92 3.51
5350 9940 5.175388 AGGGGTTAAGAACTGTATGGAAC 57.825 43.478 0.00 0.00 0.00 3.62
5351 9941 5.853572 AAGGGGTTAAGAACTGTATGGAA 57.146 39.130 0.00 0.00 0.00 3.53
5352 9942 5.515886 CCAAAGGGGTTAAGAACTGTATGGA 60.516 44.000 0.00 0.00 0.00 3.41
5353 9943 4.705023 CCAAAGGGGTTAAGAACTGTATGG 59.295 45.833 0.00 0.00 0.00 2.74
5354 9944 5.897377 CCAAAGGGGTTAAGAACTGTATG 57.103 43.478 0.00 0.00 0.00 2.39
5388 9978 2.998316 TTTTGGGCAGAAAACAAGGG 57.002 45.000 0.00 0.00 0.00 3.95
5394 9984 3.582164 AGGGTACATTTTGGGCAGAAAA 58.418 40.909 0.00 0.00 0.00 2.29
5405 9995 3.245586 TGGCCAATCAGAAGGGTACATTT 60.246 43.478 0.61 0.00 0.00 2.32
5418 10008 6.991531 GCCAATATTCTTTTTATGGCCAATCA 59.008 34.615 10.96 0.00 35.36 2.57
5419 10009 7.425577 GCCAATATTCTTTTTATGGCCAATC 57.574 36.000 10.96 0.00 35.36 2.67
5431 10023 4.167319 ACAACCAAGGGCCAATATTCTTT 58.833 39.130 6.18 0.00 0.00 2.52
5437 10029 3.818295 AAGTACAACCAAGGGCCAATA 57.182 42.857 6.18 0.00 0.00 1.90
5470 10062 6.314152 GCAGTAAAGTGGCCAAAAAGTTAAAA 59.686 34.615 7.24 0.00 0.00 1.52
5559 10154 4.184629 CAGCAGTACTATGAGAACCCAAC 58.815 47.826 0.00 0.00 0.00 3.77
5826 10430 1.033202 TGTACTAGTGATCGCCGCCA 61.033 55.000 5.39 0.00 0.00 5.69
5851 10455 2.592102 AGAAGGACACATGCCAACAT 57.408 45.000 0.00 0.00 36.79 2.71
5863 10467 7.717568 TGAGTAGATAAGTGCAATAGAAGGAC 58.282 38.462 0.00 0.00 0.00 3.85
5938 10545 5.362430 TGAGCAGAAAGGGTTACATGTTTTT 59.638 36.000 2.30 0.00 0.00 1.94
5979 10586 9.468532 GAAAATATATGGCAAGGATTTGAGAAC 57.531 33.333 0.00 0.00 36.36 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.