Multiple sequence alignment - TraesCS7D01G162600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G162600 chr7D 100.000 2804 0 0 1 2804 112434666 112431863 0.000000e+00 5179.0
1 TraesCS7D01G162600 chr7D 93.574 249 16 0 2556 2804 272749401 272749649 3.410000e-99 372.0
2 TraesCS7D01G162600 chr7D 94.215 242 14 0 2563 2804 351335335 351335094 1.230000e-98 370.0
3 TraesCS7D01G162600 chr7D 86.325 234 29 3 2093 2323 578792024 578791791 4.640000e-63 252.0
4 TraesCS7D01G162600 chr7B 84.570 2184 111 92 1 2092 72242744 72240695 0.000000e+00 1958.0
5 TraesCS7D01G162600 chr7B 86.660 982 67 36 879 1814 72256608 72255645 0.000000e+00 1029.0
6 TraesCS7D01G162600 chr7B 82.617 1047 98 45 143 1136 72257367 72256352 0.000000e+00 848.0
7 TraesCS7D01G162600 chr7B 91.209 182 14 2 2341 2520 72240615 72240434 2.160000e-61 246.0
8 TraesCS7D01G162600 chr7B 92.308 104 7 1 2 104 72257477 72257374 2.250000e-31 147.0
9 TraesCS7D01G162600 chr7A 90.909 396 24 6 1282 1677 117823111 117822728 3.200000e-144 521.0
10 TraesCS7D01G162600 chr7A 82.046 479 23 32 856 1289 117823598 117823138 1.600000e-92 350.0
11 TraesCS7D01G162600 chr7A 92.857 210 14 1 2354 2562 117792173 117791964 1.260000e-78 303.0
12 TraesCS7D01G162600 chr7A 81.075 428 27 17 1689 2091 117822651 117822253 2.730000e-75 292.0
13 TraesCS7D01G162600 chr7A 81.870 353 17 20 523 844 117823988 117823652 1.290000e-63 254.0
14 TraesCS7D01G162600 chr7A 84.914 232 29 5 2093 2320 35003872 35003643 2.170000e-56 230.0
15 TraesCS7D01G162600 chr7A 83.333 96 13 3 11 104 535462413 535462507 4.980000e-13 86.1
16 TraesCS7D01G162600 chr5D 94.239 243 14 0 2562 2804 410403554 410403312 3.410000e-99 372.0
17 TraesCS7D01G162600 chr4D 94.583 240 13 0 2560 2799 502053061 502052822 3.410000e-99 372.0
18 TraesCS7D01G162600 chr4D 93.173 249 17 0 2556 2804 427973747 427973995 1.590000e-97 366.0
19 TraesCS7D01G162600 chr1D 94.215 242 14 0 2563 2804 242068000 242067759 1.230000e-98 370.0
20 TraesCS7D01G162600 chr3A 93.827 243 15 0 2562 2804 311450774 311450532 1.590000e-97 366.0
21 TraesCS7D01G162600 chr3D 93.802 242 15 0 2563 2804 251620554 251620313 5.710000e-97 364.0
22 TraesCS7D01G162600 chr3D 86.957 230 24 5 2096 2320 495741890 495741662 1.290000e-63 254.0
23 TraesCS7D01G162600 chr3D 86.878 221 27 2 2093 2311 319646870 319646650 2.160000e-61 246.0
24 TraesCS7D01G162600 chr3D 87.383 214 24 3 2093 2304 100390032 100389820 2.790000e-60 243.0
25 TraesCS7D01G162600 chr1A 93.802 242 15 0 2563 2804 216314241 216314000 5.710000e-97 364.0
26 TraesCS7D01G162600 chr1A 87.264 212 25 2 2089 2298 553464974 553465185 1.000000e-59 241.0
27 TraesCS7D01G162600 chr2D 91.121 214 18 1 2093 2305 523643935 523643722 3.530000e-74 289.0
28 TraesCS7D01G162600 chr5B 86.522 230 29 2 2093 2320 117836300 117836071 4.640000e-63 252.0
29 TraesCS7D01G162600 chr2B 86.344 227 26 5 2093 2316 795117595 795117371 2.790000e-60 243.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G162600 chr7D 112431863 112434666 2803 True 5179.000000 5179 100.0000 1 2804 1 chr7D.!!$R1 2803
1 TraesCS7D01G162600 chr7B 72240434 72242744 2310 True 1102.000000 1958 87.8895 1 2520 2 chr7B.!!$R1 2519
2 TraesCS7D01G162600 chr7B 72255645 72257477 1832 True 674.666667 1029 87.1950 2 1814 3 chr7B.!!$R2 1812
3 TraesCS7D01G162600 chr7A 117822253 117823988 1735 True 354.250000 521 83.9750 523 2091 4 chr7A.!!$R3 1568

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
219 221 1.000019 CCTACCCTCTGTCCGTGGA 60.0 63.158 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1981 2327 0.168128 GCCAAGTACAATCGCCACAC 59.832 55.0 0.0 0.0 0.0 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
131 133 5.105567 TCTTATTGAAAATGGGCGGACTA 57.894 39.130 0.00 0.00 0.00 2.59
142 144 4.974645 TGGGCGGACTATTGATTATTCT 57.025 40.909 0.00 0.00 0.00 2.40
143 145 5.304686 TGGGCGGACTATTGATTATTCTT 57.695 39.130 0.00 0.00 0.00 2.52
144 146 5.690865 TGGGCGGACTATTGATTATTCTTT 58.309 37.500 0.00 0.00 0.00 2.52
180 182 1.331214 AATGGGCGGATATTTGCTGG 58.669 50.000 0.90 0.00 0.00 4.85
209 211 4.752594 TGGCCACCCCCTACCCTC 62.753 72.222 0.00 0.00 0.00 4.30
210 212 4.433194 GGCCACCCCCTACCCTCT 62.433 72.222 0.00 0.00 0.00 3.69
211 213 3.090532 GCCACCCCCTACCCTCTG 61.091 72.222 0.00 0.00 0.00 3.35
212 214 2.454941 CCACCCCCTACCCTCTGT 59.545 66.667 0.00 0.00 0.00 3.41
213 215 1.689582 CCACCCCCTACCCTCTGTC 60.690 68.421 0.00 0.00 0.00 3.51
214 216 1.689582 CACCCCCTACCCTCTGTCC 60.690 68.421 0.00 0.00 0.00 4.02
215 217 2.444140 CCCCCTACCCTCTGTCCG 60.444 72.222 0.00 0.00 0.00 4.79
216 218 2.363361 CCCCTACCCTCTGTCCGT 59.637 66.667 0.00 0.00 0.00 4.69
217 219 2.058595 CCCCTACCCTCTGTCCGTG 61.059 68.421 0.00 0.00 0.00 4.94
218 220 2.058595 CCCTACCCTCTGTCCGTGG 61.059 68.421 0.00 0.00 0.00 4.94
219 221 1.000019 CCTACCCTCTGTCCGTGGA 60.000 63.158 0.00 0.00 0.00 4.02
220 222 1.321074 CCTACCCTCTGTCCGTGGAC 61.321 65.000 12.17 12.17 44.77 4.02
269 290 3.502211 ACGTTGAAGATGCCCTAACTTTG 59.498 43.478 0.00 0.00 0.00 2.77
271 292 2.083774 TGAAGATGCCCTAACTTTGCG 58.916 47.619 0.00 0.00 0.00 4.85
377 401 8.844441 TTCTTACGTTGAAACCTTATTTTGTG 57.156 30.769 0.00 0.00 0.00 3.33
438 462 4.027437 AGAGTCAAGTCCCTATTCTGTCC 58.973 47.826 0.00 0.00 0.00 4.02
442 466 4.407296 GTCAAGTCCCTATTCTGTCCAGAT 59.593 45.833 0.00 0.00 37.29 2.90
451 475 1.928868 TCTGTCCAGATGTCTGAGCA 58.071 50.000 11.47 8.47 46.59 4.26
509 535 4.181010 CCGAGGGGCCTGGACATG 62.181 72.222 0.00 0.00 0.00 3.21
911 1039 9.391006 TCCATTTATATTGGAACTAACAGTGTC 57.609 33.333 0.00 0.00 40.29 3.67
918 1046 4.613944 TGGAACTAACAGTGTCACTTACG 58.386 43.478 1.67 0.00 0.00 3.18
969 1104 1.095228 GCAAATCTGAATCGGCCGGA 61.095 55.000 27.83 14.94 0.00 5.14
1086 1243 7.023575 GCACATTGTTTGGTTATAAGAGAGTG 58.976 38.462 0.00 0.00 0.00 3.51
1099 1256 9.352784 GTTATAAGAGAGTGAGCAGCTTATATG 57.647 37.037 0.00 0.00 35.30 1.78
1100 1257 5.867903 AAGAGAGTGAGCAGCTTATATGT 57.132 39.130 0.00 0.00 0.00 2.29
1101 1258 6.968263 AAGAGAGTGAGCAGCTTATATGTA 57.032 37.500 0.00 0.00 0.00 2.29
1102 1259 6.325919 AGAGAGTGAGCAGCTTATATGTAC 57.674 41.667 0.00 0.00 0.00 2.90
1138 1295 0.251922 TGGTACGTTCAGGCTAGGGT 60.252 55.000 0.00 0.00 0.00 4.34
1186 1379 1.984026 TCATCAGGCAGAGCGTGGA 60.984 57.895 11.19 0.22 43.44 4.02
1309 1537 1.262417 AGTATGCAATGCTCGAATGCG 59.738 47.619 6.82 0.00 42.91 4.73
1318 1554 2.127251 TGCTCGAATGCGCTTACATAG 58.873 47.619 9.73 0.12 37.46 2.23
1419 1661 4.083862 GTGGACCAGGGCTCGGAC 62.084 72.222 0.00 0.00 0.00 4.79
1608 1850 4.435970 TACCGGGAGCTCGCCAGA 62.436 66.667 23.61 7.09 0.00 3.86
1635 1877 0.822944 TCAACGTCGACCAGGGTACA 60.823 55.000 10.58 0.00 0.00 2.90
1814 2125 0.823769 AGGCTATGAGCGACCGATCA 60.824 55.000 12.74 12.74 43.62 2.92
1846 2161 2.049433 CCGTCGAACGAACCAGCT 60.049 61.111 8.63 0.00 46.05 4.24
1867 2195 4.355437 CTCGGTCATGCTTAGTGAAGTAG 58.645 47.826 0.00 0.00 34.90 2.57
1874 2202 3.437213 TGCTTAGTGAAGTAGCCCACTA 58.563 45.455 0.00 0.00 42.86 2.74
1886 2214 5.369409 GTAGCCCACTACCTTAAATCCTT 57.631 43.478 0.00 0.00 42.60 3.36
1887 2215 6.490241 GTAGCCCACTACCTTAAATCCTTA 57.510 41.667 0.00 0.00 42.60 2.69
1888 2216 6.892485 GTAGCCCACTACCTTAAATCCTTAA 58.108 40.000 0.00 0.00 42.60 1.85
1889 2217 6.592207 AGCCCACTACCTTAAATCCTTAAT 57.408 37.500 0.00 0.00 0.00 1.40
1890 2218 7.701257 AGCCCACTACCTTAAATCCTTAATA 57.299 36.000 0.00 0.00 0.00 0.98
1926 2254 2.505337 CGTGTGTGCATGCATGGC 60.505 61.111 25.64 19.18 0.00 4.40
1948 2276 3.367703 CCATAGCTTTTGGTTTGCTCTGG 60.368 47.826 0.00 0.00 41.99 3.86
1950 2278 0.601046 GCTTTTGGTTTGCTCTGGCC 60.601 55.000 0.00 0.00 37.74 5.36
1955 2283 3.064324 GTTTGCTCTGGCCGGCAT 61.064 61.111 30.85 0.00 38.30 4.40
1956 2284 2.751436 TTTGCTCTGGCCGGCATC 60.751 61.111 30.85 12.89 38.30 3.91
1957 2285 3.272364 TTTGCTCTGGCCGGCATCT 62.272 57.895 30.85 0.00 38.30 2.90
1958 2286 2.769652 TTTGCTCTGGCCGGCATCTT 62.770 55.000 30.85 0.00 38.30 2.40
1959 2287 2.439156 GCTCTGGCCGGCATCTTT 60.439 61.111 30.85 0.00 0.00 2.52
1960 2288 2.768492 GCTCTGGCCGGCATCTTTG 61.768 63.158 30.85 13.57 0.00 2.77
1981 2327 2.621338 CTACTGCCATGTACTGTGTGG 58.379 52.381 0.00 0.00 36.09 4.17
2005 2352 1.305219 GCGATTGTACTTGGCCTGCA 61.305 55.000 3.32 0.00 0.00 4.41
2006 2353 0.729116 CGATTGTACTTGGCCTGCAG 59.271 55.000 6.78 6.78 0.00 4.41
2036 2383 8.965819 TGTAATGCCATTGTCACTTAATTATGT 58.034 29.630 0.00 0.00 0.00 2.29
2038 2390 5.649557 TGCCATTGTCACTTAATTATGTGC 58.350 37.500 21.05 17.07 34.49 4.57
2041 2393 5.163663 CCATTGTCACTTAATTATGTGCGGT 60.164 40.000 21.05 8.68 34.49 5.68
2042 2394 5.950758 TTGTCACTTAATTATGTGCGGTT 57.049 34.783 21.05 0.00 34.49 4.44
2043 2395 7.414651 CCATTGTCACTTAATTATGTGCGGTTA 60.415 37.037 21.05 6.28 34.49 2.85
2053 2405 9.820725 TTAATTATGTGCGGTTATTAGTGTACT 57.179 29.630 0.00 0.00 0.00 2.73
2092 2444 2.333938 CTGTTCCGTCCGTGTCGT 59.666 61.111 0.00 0.00 0.00 4.34
2094 2446 2.332514 GTTCCGTCCGTGTCGTGA 59.667 61.111 0.00 0.00 0.00 4.35
2095 2447 1.728426 GTTCCGTCCGTGTCGTGAG 60.728 63.158 0.00 0.00 0.00 3.51
2096 2448 1.893335 TTCCGTCCGTGTCGTGAGA 60.893 57.895 0.00 0.00 38.16 3.27
2097 2449 1.239296 TTCCGTCCGTGTCGTGAGAT 61.239 55.000 0.00 0.00 45.19 2.75
2099 2451 1.500396 CGTCCGTGTCGTGAGATGA 59.500 57.895 0.00 0.00 45.19 2.92
2101 2453 1.337821 GTCCGTGTCGTGAGATGAAC 58.662 55.000 0.00 0.00 45.19 3.18
2102 2454 0.242825 TCCGTGTCGTGAGATGAACC 59.757 55.000 0.00 0.00 45.19 3.62
2103 2455 0.736325 CCGTGTCGTGAGATGAACCC 60.736 60.000 0.00 0.00 45.19 4.11
2105 2457 1.732732 CGTGTCGTGAGATGAACCCTC 60.733 57.143 0.00 0.00 45.19 4.30
2106 2458 0.895530 TGTCGTGAGATGAACCCTCC 59.104 55.000 0.00 0.00 45.19 4.30
2107 2459 0.175989 GTCGTGAGATGAACCCTCCC 59.824 60.000 0.00 0.00 45.19 4.30
2108 2460 0.252057 TCGTGAGATGAACCCTCCCA 60.252 55.000 0.00 0.00 33.31 4.37
2110 2462 1.473965 CGTGAGATGAACCCTCCCATG 60.474 57.143 0.00 0.00 0.00 3.66
2111 2463 1.133976 GTGAGATGAACCCTCCCATGG 60.134 57.143 4.14 4.14 0.00 3.66
2121 2473 3.833559 CCCTCCCATGGGCTATTTTAT 57.166 47.619 27.41 0.00 40.84 1.40
2122 2474 4.132122 CCCTCCCATGGGCTATTTTATT 57.868 45.455 27.41 0.00 40.84 1.40
2123 2475 4.492646 CCCTCCCATGGGCTATTTTATTT 58.507 43.478 27.41 0.00 40.84 1.40
2124 2476 4.907269 CCCTCCCATGGGCTATTTTATTTT 59.093 41.667 27.41 0.00 40.84 1.82
2139 2491 4.079446 TTTTTGCCAGCTCTCCGG 57.921 55.556 0.00 0.00 0.00 5.14
2140 2492 1.454104 TTTTTGCCAGCTCTCCGGA 59.546 52.632 2.93 2.93 0.00 5.14
2141 2493 0.889186 TTTTTGCCAGCTCTCCGGAC 60.889 55.000 0.00 0.00 0.00 4.79
2142 2494 2.748058 TTTTGCCAGCTCTCCGGACC 62.748 60.000 0.00 0.00 0.00 4.46
2143 2495 4.704103 TGCCAGCTCTCCGGACCT 62.704 66.667 0.00 0.00 0.00 3.85
2144 2496 4.154347 GCCAGCTCTCCGGACCTG 62.154 72.222 0.00 7.56 0.00 4.00
2145 2497 3.465403 CCAGCTCTCCGGACCTGG 61.465 72.222 20.60 20.60 38.50 4.45
2146 2498 3.465403 CAGCTCTCCGGACCTGGG 61.465 72.222 0.00 0.00 0.00 4.45
2149 2501 3.775654 CTCTCCGGACCTGGGCAC 61.776 72.222 0.00 0.00 0.00 5.01
2150 2502 4.631740 TCTCCGGACCTGGGCACA 62.632 66.667 0.00 0.00 0.00 4.57
2151 2503 4.087892 CTCCGGACCTGGGCACAG 62.088 72.222 9.70 9.70 44.51 3.66
2152 2504 4.954118 TCCGGACCTGGGCACAGT 62.954 66.667 16.38 2.60 43.36 3.55
2153 2505 4.704833 CCGGACCTGGGCACAGTG 62.705 72.222 16.38 9.09 43.36 3.66
2163 2515 4.384599 GCACAGTGCACCATCAGA 57.615 55.556 21.22 0.00 44.26 3.27
2164 2516 2.864114 GCACAGTGCACCATCAGAT 58.136 52.632 21.22 0.00 44.26 2.90
2165 2517 0.450583 GCACAGTGCACCATCAGATG 59.549 55.000 21.22 5.79 44.26 2.90
2166 2518 2.879163 GCACAGTGCACCATCAGATGG 61.879 57.143 25.87 25.87 44.78 3.51
2176 2528 1.945394 CCATCAGATGGGCTTTCTTCG 59.055 52.381 20.76 0.00 46.86 3.79
2177 2529 2.636830 CATCAGATGGGCTTTCTTCGT 58.363 47.619 1.95 0.00 0.00 3.85
2178 2530 2.859165 TCAGATGGGCTTTCTTCGTT 57.141 45.000 0.00 0.00 0.00 3.85
2179 2531 2.426522 TCAGATGGGCTTTCTTCGTTG 58.573 47.619 0.00 0.00 0.00 4.10
2180 2532 1.470098 CAGATGGGCTTTCTTCGTTGG 59.530 52.381 0.00 0.00 0.00 3.77
2181 2533 0.811281 GATGGGCTTTCTTCGTTGGG 59.189 55.000 0.00 0.00 0.00 4.12
2182 2534 1.250840 ATGGGCTTTCTTCGTTGGGC 61.251 55.000 0.00 0.00 0.00 5.36
2183 2535 2.636412 GGGCTTTCTTCGTTGGGCC 61.636 63.158 0.00 0.00 38.92 5.80
2184 2536 1.901464 GGCTTTCTTCGTTGGGCCA 60.901 57.895 0.00 0.00 39.38 5.36
2185 2537 1.460273 GGCTTTCTTCGTTGGGCCAA 61.460 55.000 16.66 16.66 39.38 4.52
2186 2538 0.387565 GCTTTCTTCGTTGGGCCAAA 59.612 50.000 22.82 2.89 0.00 3.28
2187 2539 1.202475 GCTTTCTTCGTTGGGCCAAAA 60.202 47.619 22.82 12.00 0.00 2.44
2188 2540 2.469826 CTTTCTTCGTTGGGCCAAAAC 58.530 47.619 22.82 9.70 0.00 2.43
2192 2544 3.220658 CGTTGGGCCAAAACGGGT 61.221 61.111 26.78 0.00 45.05 5.28
2200 2552 2.721945 CCAAAACGGGTGGCAAGTA 58.278 52.632 0.00 0.00 0.00 2.24
2201 2553 1.033574 CCAAAACGGGTGGCAAGTAA 58.966 50.000 0.00 0.00 0.00 2.24
2202 2554 1.616374 CCAAAACGGGTGGCAAGTAAT 59.384 47.619 0.00 0.00 0.00 1.89
2205 2557 2.279935 AACGGGTGGCAAGTAATGAA 57.720 45.000 0.00 0.00 0.00 2.57
2212 2564 4.443598 GGGTGGCAAGTAATGAAACCAAAA 60.444 41.667 0.00 0.00 37.63 2.44
2213 2565 5.119694 GGTGGCAAGTAATGAAACCAAAAA 58.880 37.500 0.00 0.00 36.53 1.94
2238 2590 9.965824 AAATATAGGTGAAATTAATTGAAGCGG 57.034 29.630 0.39 0.00 0.00 5.52
2239 2591 4.718940 AGGTGAAATTAATTGAAGCGGG 57.281 40.909 0.39 0.00 0.00 6.13
2240 2592 4.340617 AGGTGAAATTAATTGAAGCGGGA 58.659 39.130 0.39 0.00 0.00 5.14
2241 2593 4.157840 AGGTGAAATTAATTGAAGCGGGAC 59.842 41.667 0.39 0.00 0.00 4.46
2242 2594 4.421058 GTGAAATTAATTGAAGCGGGACC 58.579 43.478 0.39 0.00 0.00 4.46
2243 2595 4.082463 GTGAAATTAATTGAAGCGGGACCA 60.082 41.667 0.39 0.00 0.00 4.02
2244 2596 4.524714 TGAAATTAATTGAAGCGGGACCAA 59.475 37.500 0.39 0.00 0.00 3.67
2245 2597 5.011125 TGAAATTAATTGAAGCGGGACCAAA 59.989 36.000 0.39 0.00 0.00 3.28
2246 2598 3.926821 TTAATTGAAGCGGGACCAAAC 57.073 42.857 0.00 0.00 0.00 2.93
2247 2599 1.698506 AATTGAAGCGGGACCAAACA 58.301 45.000 0.00 0.00 0.00 2.83
2248 2600 1.698506 ATTGAAGCGGGACCAAACAA 58.301 45.000 0.00 0.00 0.00 2.83
2249 2601 1.475403 TTGAAGCGGGACCAAACAAA 58.525 45.000 0.00 0.00 0.00 2.83
2250 2602 1.475403 TGAAGCGGGACCAAACAAAA 58.525 45.000 0.00 0.00 0.00 2.44
2251 2603 2.035632 TGAAGCGGGACCAAACAAAAT 58.964 42.857 0.00 0.00 0.00 1.82
2252 2604 3.223435 TGAAGCGGGACCAAACAAAATA 58.777 40.909 0.00 0.00 0.00 1.40
2253 2605 3.254657 TGAAGCGGGACCAAACAAAATAG 59.745 43.478 0.00 0.00 0.00 1.73
2254 2606 2.167662 AGCGGGACCAAACAAAATAGG 58.832 47.619 0.00 0.00 0.00 2.57
2255 2607 2.164338 GCGGGACCAAACAAAATAGGA 58.836 47.619 0.00 0.00 0.00 2.94
2256 2608 2.758423 GCGGGACCAAACAAAATAGGAT 59.242 45.455 0.00 0.00 0.00 3.24
2257 2609 3.181490 GCGGGACCAAACAAAATAGGATC 60.181 47.826 0.00 0.00 0.00 3.36
2258 2610 4.013728 CGGGACCAAACAAAATAGGATCA 58.986 43.478 0.00 0.00 0.00 2.92
2259 2611 4.461081 CGGGACCAAACAAAATAGGATCAA 59.539 41.667 0.00 0.00 0.00 2.57
2260 2612 5.047660 CGGGACCAAACAAAATAGGATCAAA 60.048 40.000 0.00 0.00 0.00 2.69
2261 2613 6.163476 GGGACCAAACAAAATAGGATCAAAC 58.837 40.000 0.00 0.00 0.00 2.93
2262 2614 6.163476 GGACCAAACAAAATAGGATCAAACC 58.837 40.000 0.00 0.00 0.00 3.27
2263 2615 6.239458 GGACCAAACAAAATAGGATCAAACCA 60.239 38.462 0.00 0.00 0.00 3.67
2264 2616 7.130681 ACCAAACAAAATAGGATCAAACCAA 57.869 32.000 0.00 0.00 0.00 3.67
2265 2617 7.569240 ACCAAACAAAATAGGATCAAACCAAA 58.431 30.769 0.00 0.00 0.00 3.28
2266 2618 8.049721 ACCAAACAAAATAGGATCAAACCAAAA 58.950 29.630 0.00 0.00 0.00 2.44
2267 2619 8.897752 CCAAACAAAATAGGATCAAACCAAAAA 58.102 29.630 0.00 0.00 0.00 1.94
2275 2627 9.492730 AATAGGATCAAACCAAAAATATCACCT 57.507 29.630 0.00 0.00 0.00 4.00
2276 2628 7.410120 AGGATCAAACCAAAAATATCACCTC 57.590 36.000 0.00 0.00 0.00 3.85
2277 2629 6.381133 AGGATCAAACCAAAAATATCACCTCC 59.619 38.462 0.00 0.00 0.00 4.30
2278 2630 5.993748 TCAAACCAAAAATATCACCTCCC 57.006 39.130 0.00 0.00 0.00 4.30
2279 2631 5.650283 TCAAACCAAAAATATCACCTCCCT 58.350 37.500 0.00 0.00 0.00 4.20
2280 2632 6.081356 TCAAACCAAAAATATCACCTCCCTT 58.919 36.000 0.00 0.00 0.00 3.95
2281 2633 6.556874 TCAAACCAAAAATATCACCTCCCTTT 59.443 34.615 0.00 0.00 0.00 3.11
2282 2634 7.730784 TCAAACCAAAAATATCACCTCCCTTTA 59.269 33.333 0.00 0.00 0.00 1.85
2283 2635 8.371699 CAAACCAAAAATATCACCTCCCTTTAA 58.628 33.333 0.00 0.00 0.00 1.52
2284 2636 8.679344 AACCAAAAATATCACCTCCCTTTAAT 57.321 30.769 0.00 0.00 0.00 1.40
2285 2637 9.777008 AACCAAAAATATCACCTCCCTTTAATA 57.223 29.630 0.00 0.00 0.00 0.98
2286 2638 9.421399 ACCAAAAATATCACCTCCCTTTAATAG 57.579 33.333 0.00 0.00 0.00 1.73
2287 2639 9.421399 CCAAAAATATCACCTCCCTTTAATAGT 57.579 33.333 0.00 0.00 0.00 2.12
2291 2643 9.461734 AAATATCACCTCCCTTTAATAGTAGGT 57.538 33.333 0.00 0.00 38.32 3.08
2295 2647 9.771140 ATCACCTCCCTTTAATAGTAGGTATAG 57.229 37.037 0.00 0.00 36.63 1.31
2296 2648 8.963277 TCACCTCCCTTTAATAGTAGGTATAGA 58.037 37.037 0.00 0.00 36.63 1.98
2297 2649 9.771140 CACCTCCCTTTAATAGTAGGTATAGAT 57.229 37.037 0.00 0.00 36.63 1.98
2375 2728 4.394729 CAGACTGGTAAGCCCAACTAAAA 58.605 43.478 0.00 0.00 44.65 1.52
2382 2735 4.320714 GGTAAGCCCAACTAAAACGGAAAG 60.321 45.833 0.00 0.00 0.00 2.62
2397 2750 0.668535 GAAAGCCCGGCATGTATTCC 59.331 55.000 13.15 0.00 0.00 3.01
2407 2760 1.880027 GCATGTATTCCGGACCAATCC 59.120 52.381 1.83 0.00 42.28 3.01
2412 2765 1.221635 ATTCCGGACCAATCCATCCA 58.778 50.000 1.83 0.00 46.67 3.41
2421 2774 4.342092 GGACCAATCCATCCATTTCGAATT 59.658 41.667 0.00 0.00 45.47 2.17
2467 2821 8.464770 TGAGACAAGTCTTTGAAAAACAATTG 57.535 30.769 3.24 3.24 40.61 2.32
2468 2822 7.063308 TGAGACAAGTCTTTGAAAAACAATTGC 59.937 33.333 5.05 0.00 40.61 3.56
2471 2825 6.650390 ACAAGTCTTTGAAAAACAATTGCACT 59.350 30.769 5.05 0.00 38.36 4.40
2478 2832 7.856145 TTGAAAAACAATTGCACTACCAATT 57.144 28.000 5.05 0.00 44.01 2.32
2489 2843 4.083537 TGCACTACCAATTTGTAGCTTTCG 60.084 41.667 14.88 2.73 41.57 3.46
2520 2874 9.120538 ACAAAATCAGTGTCACAAATAAGTACT 57.879 29.630 5.62 0.00 0.00 2.73
2540 2894 9.517609 AAGTACTATGAATACAAATCTCACGAC 57.482 33.333 0.00 0.00 0.00 4.34
2541 2895 8.683615 AGTACTATGAATACAAATCTCACGACA 58.316 33.333 0.00 0.00 0.00 4.35
2542 2896 9.464714 GTACTATGAATACAAATCTCACGACAT 57.535 33.333 0.00 0.00 0.00 3.06
2543 2897 8.581057 ACTATGAATACAAATCTCACGACATC 57.419 34.615 0.00 0.00 0.00 3.06
2544 2898 8.197439 ACTATGAATACAAATCTCACGACATCA 58.803 33.333 0.00 0.00 0.00 3.07
2545 2899 7.848223 ATGAATACAAATCTCACGACATCAA 57.152 32.000 0.00 0.00 0.00 2.57
2546 2900 7.848223 TGAATACAAATCTCACGACATCAAT 57.152 32.000 0.00 0.00 0.00 2.57
2547 2901 8.267620 TGAATACAAATCTCACGACATCAATT 57.732 30.769 0.00 0.00 0.00 2.32
2548 2902 8.729756 TGAATACAAATCTCACGACATCAATTT 58.270 29.630 0.00 0.00 0.00 1.82
2549 2903 9.559958 GAATACAAATCTCACGACATCAATTTT 57.440 29.630 0.00 0.00 0.00 1.82
2552 2906 8.900511 ACAAATCTCACGACATCAATTTTATG 57.099 30.769 0.00 0.00 0.00 1.90
2553 2907 8.514594 ACAAATCTCACGACATCAATTTTATGT 58.485 29.630 3.38 3.38 40.23 2.29
2554 2908 9.003112 CAAATCTCACGACATCAATTTTATGTC 57.997 33.333 16.00 16.00 46.36 3.06
2600 2954 6.906157 AAAAACTGAGTTGATGATGATGGT 57.094 33.333 0.00 0.00 0.00 3.55
2601 2955 5.892160 AAACTGAGTTGATGATGATGGTG 57.108 39.130 0.00 0.00 0.00 4.17
2602 2956 4.564782 ACTGAGTTGATGATGATGGTGT 57.435 40.909 0.00 0.00 0.00 4.16
2603 2957 4.259356 ACTGAGTTGATGATGATGGTGTG 58.741 43.478 0.00 0.00 0.00 3.82
2604 2958 3.011818 TGAGTTGATGATGATGGTGTGC 58.988 45.455 0.00 0.00 0.00 4.57
2605 2959 2.357009 GAGTTGATGATGATGGTGTGCC 59.643 50.000 0.00 0.00 0.00 5.01
2606 2960 2.025605 AGTTGATGATGATGGTGTGCCT 60.026 45.455 0.00 0.00 35.27 4.75
2607 2961 2.047002 TGATGATGATGGTGTGCCTG 57.953 50.000 0.00 0.00 35.27 4.85
2608 2962 0.666913 GATGATGATGGTGTGCCTGC 59.333 55.000 0.00 0.00 35.27 4.85
2609 2963 0.754217 ATGATGATGGTGTGCCTGCC 60.754 55.000 0.00 0.00 35.27 4.85
2610 2964 1.378911 GATGATGGTGTGCCTGCCA 60.379 57.895 0.00 0.00 39.33 4.92
2613 2967 3.093555 ATGGTGTGCCTGCCATCT 58.906 55.556 0.00 0.00 41.24 2.90
2614 2968 1.385368 ATGGTGTGCCTGCCATCTT 59.615 52.632 0.00 0.00 41.24 2.40
2615 2969 0.968901 ATGGTGTGCCTGCCATCTTG 60.969 55.000 0.00 0.00 41.24 3.02
2616 2970 1.604593 GGTGTGCCTGCCATCTTGT 60.605 57.895 0.00 0.00 0.00 3.16
2617 2971 0.322456 GGTGTGCCTGCCATCTTGTA 60.322 55.000 0.00 0.00 0.00 2.41
2618 2972 1.533625 GTGTGCCTGCCATCTTGTAA 58.466 50.000 0.00 0.00 0.00 2.41
2619 2973 2.094675 GTGTGCCTGCCATCTTGTAAT 58.905 47.619 0.00 0.00 0.00 1.89
2620 2974 3.278574 GTGTGCCTGCCATCTTGTAATA 58.721 45.455 0.00 0.00 0.00 0.98
2621 2975 3.885297 GTGTGCCTGCCATCTTGTAATAT 59.115 43.478 0.00 0.00 0.00 1.28
2622 2976 5.063204 GTGTGCCTGCCATCTTGTAATATA 58.937 41.667 0.00 0.00 0.00 0.86
2623 2977 5.180117 GTGTGCCTGCCATCTTGTAATATAG 59.820 44.000 0.00 0.00 0.00 1.31
2624 2978 5.071653 TGTGCCTGCCATCTTGTAATATAGA 59.928 40.000 0.00 0.00 0.00 1.98
2625 2979 5.409826 GTGCCTGCCATCTTGTAATATAGAC 59.590 44.000 0.00 0.00 0.00 2.59
2626 2980 4.938226 GCCTGCCATCTTGTAATATAGACC 59.062 45.833 0.00 0.00 0.00 3.85
2627 2981 5.171476 CCTGCCATCTTGTAATATAGACCG 58.829 45.833 0.00 0.00 0.00 4.79
2628 2982 5.279506 CCTGCCATCTTGTAATATAGACCGT 60.280 44.000 0.00 0.00 0.00 4.83
2629 2983 6.169557 TGCCATCTTGTAATATAGACCGTT 57.830 37.500 0.00 0.00 0.00 4.44
2630 2984 5.989168 TGCCATCTTGTAATATAGACCGTTG 59.011 40.000 0.00 0.00 0.00 4.10
2631 2985 5.408604 GCCATCTTGTAATATAGACCGTTGG 59.591 44.000 0.00 0.00 0.00 3.77
2632 2986 6.740401 GCCATCTTGTAATATAGACCGTTGGA 60.740 42.308 0.00 0.00 0.00 3.53
2633 2987 7.386851 CCATCTTGTAATATAGACCGTTGGAT 58.613 38.462 0.00 0.00 0.00 3.41
2634 2988 7.545965 CCATCTTGTAATATAGACCGTTGGATC 59.454 40.741 0.00 0.00 0.00 3.36
2635 2989 7.834881 TCTTGTAATATAGACCGTTGGATCT 57.165 36.000 0.00 0.00 0.00 2.75
2636 2990 8.929260 TCTTGTAATATAGACCGTTGGATCTA 57.071 34.615 0.00 0.00 32.11 1.98
2637 2991 9.529823 TCTTGTAATATAGACCGTTGGATCTAT 57.470 33.333 0.00 10.60 40.47 1.98
2643 2997 9.922477 AATATAGACCGTTGGATCTATATCTCA 57.078 33.333 18.07 4.43 44.71 3.27
2644 2998 5.968528 AGACCGTTGGATCTATATCTCAC 57.031 43.478 0.00 0.00 32.29 3.51
2645 2999 4.456222 AGACCGTTGGATCTATATCTCACG 59.544 45.833 0.00 0.00 37.31 4.35
2646 3000 4.395625 ACCGTTGGATCTATATCTCACGA 58.604 43.478 11.53 0.00 38.62 4.35
2647 3001 4.825634 ACCGTTGGATCTATATCTCACGAA 59.174 41.667 11.53 0.00 38.62 3.85
2648 3002 5.477291 ACCGTTGGATCTATATCTCACGAAT 59.523 40.000 11.53 1.65 38.62 3.34
2649 3003 6.657966 ACCGTTGGATCTATATCTCACGAATA 59.342 38.462 11.53 0.00 38.62 1.75
2650 3004 7.148222 ACCGTTGGATCTATATCTCACGAATAG 60.148 40.741 11.53 0.00 38.62 1.73
2651 3005 7.065923 CCGTTGGATCTATATCTCACGAATAGA 59.934 40.741 11.53 0.00 38.62 1.98
2652 3006 8.451748 CGTTGGATCTATATCTCACGAATAGAA 58.548 37.037 0.00 0.00 38.62 2.10
2655 3009 8.462811 TGGATCTATATCTCACGAATAGAAAGC 58.537 37.037 0.00 0.00 36.20 3.51
2656 3010 8.462811 GGATCTATATCTCACGAATAGAAAGCA 58.537 37.037 0.00 0.00 36.20 3.91
2657 3011 9.847706 GATCTATATCTCACGAATAGAAAGCAA 57.152 33.333 0.00 0.00 36.20 3.91
2659 3013 9.464714 TCTATATCTCACGAATAGAAAGCAAAC 57.535 33.333 0.00 0.00 31.05 2.93
2660 3014 9.469807 CTATATCTCACGAATAGAAAGCAAACT 57.530 33.333 0.00 0.00 0.00 2.66
2662 3016 9.988815 ATATCTCACGAATAGAAAGCAAACTAT 57.011 29.630 0.00 0.00 0.00 2.12
2663 3017 7.525688 TCTCACGAATAGAAAGCAAACTATG 57.474 36.000 0.00 0.00 30.98 2.23
2664 3018 7.320399 TCTCACGAATAGAAAGCAAACTATGA 58.680 34.615 0.00 0.00 30.98 2.15
2665 3019 7.275779 TCTCACGAATAGAAAGCAAACTATGAC 59.724 37.037 0.00 0.00 30.98 3.06
2666 3020 6.871492 TCACGAATAGAAAGCAAACTATGACA 59.129 34.615 0.00 0.00 30.98 3.58
2667 3021 7.386573 TCACGAATAGAAAGCAAACTATGACAA 59.613 33.333 0.00 0.00 30.98 3.18
2668 3022 8.177663 CACGAATAGAAAGCAAACTATGACAAT 58.822 33.333 0.00 0.00 30.98 2.71
2669 3023 8.730680 ACGAATAGAAAGCAAACTATGACAATT 58.269 29.630 0.00 0.00 30.98 2.32
2670 3024 9.559958 CGAATAGAAAGCAAACTATGACAATTT 57.440 29.630 0.00 0.00 30.98 1.82
2687 3041 8.239038 TGACAATTTTACAAAAGATACCCACA 57.761 30.769 0.00 0.00 0.00 4.17
2688 3042 8.138712 TGACAATTTTACAAAAGATACCCACAC 58.861 33.333 0.00 0.00 0.00 3.82
2689 3043 7.438564 ACAATTTTACAAAAGATACCCACACC 58.561 34.615 0.00 0.00 0.00 4.16
2690 3044 7.289084 ACAATTTTACAAAAGATACCCACACCT 59.711 33.333 0.00 0.00 0.00 4.00
2691 3045 6.887626 TTTTACAAAAGATACCCACACCTC 57.112 37.500 0.00 0.00 0.00 3.85
2692 3046 5.836024 TTACAAAAGATACCCACACCTCT 57.164 39.130 0.00 0.00 0.00 3.69
2693 3047 4.287766 ACAAAAGATACCCACACCTCTC 57.712 45.455 0.00 0.00 0.00 3.20
2694 3048 3.910627 ACAAAAGATACCCACACCTCTCT 59.089 43.478 0.00 0.00 0.00 3.10
2695 3049 4.020128 ACAAAAGATACCCACACCTCTCTC 60.020 45.833 0.00 0.00 0.00 3.20
2696 3050 2.463047 AGATACCCACACCTCTCTCC 57.537 55.000 0.00 0.00 0.00 3.71
2697 3051 1.646447 AGATACCCACACCTCTCTCCA 59.354 52.381 0.00 0.00 0.00 3.86
2698 3052 1.757699 GATACCCACACCTCTCTCCAC 59.242 57.143 0.00 0.00 0.00 4.02
2699 3053 0.485543 TACCCACACCTCTCTCCACA 59.514 55.000 0.00 0.00 0.00 4.17
2700 3054 0.178891 ACCCACACCTCTCTCCACAT 60.179 55.000 0.00 0.00 0.00 3.21
2701 3055 0.987294 CCCACACCTCTCTCCACATT 59.013 55.000 0.00 0.00 0.00 2.71
2702 3056 1.352352 CCCACACCTCTCTCCACATTT 59.648 52.381 0.00 0.00 0.00 2.32
2703 3057 2.571653 CCCACACCTCTCTCCACATTTA 59.428 50.000 0.00 0.00 0.00 1.40
2704 3058 3.600388 CCACACCTCTCTCCACATTTAC 58.400 50.000 0.00 0.00 0.00 2.01
2705 3059 3.007940 CCACACCTCTCTCCACATTTACA 59.992 47.826 0.00 0.00 0.00 2.41
2706 3060 4.248859 CACACCTCTCTCCACATTTACAG 58.751 47.826 0.00 0.00 0.00 2.74
2707 3061 4.021104 CACACCTCTCTCCACATTTACAGA 60.021 45.833 0.00 0.00 0.00 3.41
2708 3062 4.780021 ACACCTCTCTCCACATTTACAGAT 59.220 41.667 0.00 0.00 0.00 2.90
2709 3063 5.958380 ACACCTCTCTCCACATTTACAGATA 59.042 40.000 0.00 0.00 0.00 1.98
2710 3064 6.440647 ACACCTCTCTCCACATTTACAGATAA 59.559 38.462 0.00 0.00 0.00 1.75
2711 3065 6.983307 CACCTCTCTCCACATTTACAGATAAG 59.017 42.308 0.00 0.00 0.00 1.73
2712 3066 6.098982 ACCTCTCTCCACATTTACAGATAAGG 59.901 42.308 0.00 0.00 0.00 2.69
2713 3067 5.918608 TCTCTCCACATTTACAGATAAGGC 58.081 41.667 0.00 0.00 0.00 4.35
2714 3068 5.036117 TCTCCACATTTACAGATAAGGCC 57.964 43.478 0.00 0.00 0.00 5.19
2715 3069 4.721776 TCTCCACATTTACAGATAAGGCCT 59.278 41.667 0.00 0.00 0.00 5.19
2716 3070 5.191722 TCTCCACATTTACAGATAAGGCCTT 59.808 40.000 24.18 24.18 0.00 4.35
2717 3071 5.192927 TCCACATTTACAGATAAGGCCTTG 58.807 41.667 28.77 14.69 0.00 3.61
2718 3072 4.202050 CCACATTTACAGATAAGGCCTTGC 60.202 45.833 28.77 19.04 0.00 4.01
2728 3082 2.954611 GGCCTTGCCTCGTTCAAC 59.045 61.111 0.00 0.00 46.69 3.18
2729 3083 2.626780 GGCCTTGCCTCGTTCAACC 61.627 63.158 0.00 0.00 46.69 3.77
2730 3084 1.600916 GCCTTGCCTCGTTCAACCT 60.601 57.895 0.00 0.00 0.00 3.50
2731 3085 1.172812 GCCTTGCCTCGTTCAACCTT 61.173 55.000 0.00 0.00 0.00 3.50
2732 3086 1.880646 GCCTTGCCTCGTTCAACCTTA 60.881 52.381 0.00 0.00 0.00 2.69
2733 3087 2.711542 CCTTGCCTCGTTCAACCTTAT 58.288 47.619 0.00 0.00 0.00 1.73
2734 3088 2.678336 CCTTGCCTCGTTCAACCTTATC 59.322 50.000 0.00 0.00 0.00 1.75
2735 3089 3.600388 CTTGCCTCGTTCAACCTTATCT 58.400 45.455 0.00 0.00 0.00 1.98
2736 3090 3.247006 TGCCTCGTTCAACCTTATCTC 57.753 47.619 0.00 0.00 0.00 2.75
2737 3091 2.093658 TGCCTCGTTCAACCTTATCTCC 60.094 50.000 0.00 0.00 0.00 3.71
2738 3092 2.742204 GCCTCGTTCAACCTTATCTCCC 60.742 54.545 0.00 0.00 0.00 4.30
2739 3093 2.500098 CCTCGTTCAACCTTATCTCCCA 59.500 50.000 0.00 0.00 0.00 4.37
2740 3094 3.522553 CTCGTTCAACCTTATCTCCCAC 58.477 50.000 0.00 0.00 0.00 4.61
2741 3095 2.901192 TCGTTCAACCTTATCTCCCACA 59.099 45.455 0.00 0.00 0.00 4.17
2742 3096 3.325425 TCGTTCAACCTTATCTCCCACAA 59.675 43.478 0.00 0.00 0.00 3.33
2743 3097 3.435671 CGTTCAACCTTATCTCCCACAAC 59.564 47.826 0.00 0.00 0.00 3.32
2744 3098 3.713826 TCAACCTTATCTCCCACAACC 57.286 47.619 0.00 0.00 0.00 3.77
2745 3099 3.256704 TCAACCTTATCTCCCACAACCT 58.743 45.455 0.00 0.00 0.00 3.50
2746 3100 3.263425 TCAACCTTATCTCCCACAACCTC 59.737 47.826 0.00 0.00 0.00 3.85
2747 3101 2.915869 ACCTTATCTCCCACAACCTCA 58.084 47.619 0.00 0.00 0.00 3.86
2748 3102 3.464828 ACCTTATCTCCCACAACCTCAT 58.535 45.455 0.00 0.00 0.00 2.90
2749 3103 3.852578 ACCTTATCTCCCACAACCTCATT 59.147 43.478 0.00 0.00 0.00 2.57
2750 3104 4.202441 CCTTATCTCCCACAACCTCATTG 58.798 47.826 0.00 0.00 44.60 2.82
2751 3105 2.134789 ATCTCCCACAACCTCATTGC 57.865 50.000 0.00 0.00 42.62 3.56
2752 3106 1.067295 TCTCCCACAACCTCATTGCT 58.933 50.000 0.00 0.00 42.62 3.91
2753 3107 1.171308 CTCCCACAACCTCATTGCTG 58.829 55.000 0.00 0.00 42.62 4.41
2754 3108 0.770499 TCCCACAACCTCATTGCTGA 59.230 50.000 0.00 0.00 42.62 4.26
2756 3110 0.524862 CCACAACCTCATTGCTGAGC 59.475 55.000 0.00 0.00 46.39 4.26
2757 3111 1.241165 CACAACCTCATTGCTGAGCA 58.759 50.000 1.40 1.40 46.39 4.26
2786 3140 7.888250 AAAAAGAAAGTCTCTGGAACAATCT 57.112 32.000 0.00 0.00 38.70 2.40
2787 3141 6.874288 AAAGAAAGTCTCTGGAACAATCTG 57.126 37.500 0.00 0.00 38.70 2.90
2788 3142 4.904241 AGAAAGTCTCTGGAACAATCTGG 58.096 43.478 0.00 0.00 38.70 3.86
2789 3143 2.777832 AGTCTCTGGAACAATCTGGC 57.222 50.000 0.00 0.00 38.70 4.85
2790 3144 1.980765 AGTCTCTGGAACAATCTGGCA 59.019 47.619 0.00 0.00 38.70 4.92
2791 3145 2.575279 AGTCTCTGGAACAATCTGGCAT 59.425 45.455 0.00 0.00 38.70 4.40
2792 3146 2.681848 GTCTCTGGAACAATCTGGCATG 59.318 50.000 0.00 0.00 38.70 4.06
2793 3147 2.573009 TCTCTGGAACAATCTGGCATGA 59.427 45.455 0.00 0.00 38.70 3.07
2794 3148 3.201487 TCTCTGGAACAATCTGGCATGAT 59.799 43.478 0.00 0.00 38.70 2.45
2795 3149 3.284617 TCTGGAACAATCTGGCATGATG 58.715 45.455 0.00 0.00 38.70 3.07
2796 3150 2.361119 CTGGAACAATCTGGCATGATGG 59.639 50.000 0.00 0.00 38.70 3.51
2797 3151 1.068127 GGAACAATCTGGCATGATGGC 59.932 52.381 12.54 12.54 44.03 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
180 182 1.823899 GTGGCCATCCAACCCGATC 60.824 63.158 9.72 0.00 45.53 3.69
211 213 1.091771 CATGCTGGATGTCCACGGAC 61.092 60.000 9.38 9.38 42.01 4.79
212 214 1.221566 CATGCTGGATGTCCACGGA 59.778 57.895 0.44 0.00 42.01 4.69
213 215 1.078214 ACATGCTGGATGTCCACGG 60.078 57.895 9.14 0.00 41.91 4.94
214 216 4.623814 ACATGCTGGATGTCCACG 57.376 55.556 9.14 0.00 41.91 4.94
220 222 0.734889 GAAACCGGACATGCTGGATG 59.265 55.000 9.46 7.67 46.81 3.51
221 223 0.327924 TGAAACCGGACATGCTGGAT 59.672 50.000 9.46 6.91 46.81 3.41
222 224 0.327924 ATGAAACCGGACATGCTGGA 59.672 50.000 9.46 0.72 46.81 3.86
227 229 0.171007 GGTGCATGAAACCGGACATG 59.829 55.000 24.67 24.67 44.32 3.21
228 230 0.251121 TGGTGCATGAAACCGGACAT 60.251 50.000 9.46 8.14 40.86 3.06
269 290 3.001330 GGTGTAGCTGTTATGATGAACGC 59.999 47.826 0.00 0.00 31.59 4.84
271 292 3.877508 GGGGTGTAGCTGTTATGATGAAC 59.122 47.826 0.00 0.00 0.00 3.18
438 462 2.415857 GCTTTCACTGCTCAGACATCTG 59.584 50.000 3.60 2.24 45.08 2.90
442 466 1.134431 TGTGCTTTCACTGCTCAGACA 60.134 47.619 3.60 0.00 43.49 3.41
451 475 3.514645 CAAAGTGCTTTGTGCTTTCACT 58.485 40.909 14.55 0.00 43.52 3.41
911 1039 6.097356 TGCAAGAATAACCTACTCGTAAGTG 58.903 40.000 0.00 0.00 36.92 3.16
918 1046 5.755813 CATGCATGCAAGAATAACCTACTC 58.244 41.667 26.68 0.00 0.00 2.59
969 1104 1.955080 GTCGATGGAGGGAGTCGTAAT 59.045 52.381 0.00 0.00 36.77 1.89
1086 1243 4.781071 ACGTACGTACATATAAGCTGCTC 58.219 43.478 21.41 0.00 0.00 4.26
1161 1351 0.177604 CTCTGCCTGATGACCACTCC 59.822 60.000 0.00 0.00 0.00 3.85
1263 1456 9.658799 TGAGTAGTATTAGTTTCACTACGTAGT 57.341 33.333 22.45 22.45 45.96 2.73
1266 1459 8.558973 ACTGAGTAGTATTAGTTTCACTACGT 57.441 34.615 0.00 0.00 45.96 3.57
1270 1463 8.967918 TGCATACTGAGTAGTATTAGTTTCACT 58.032 33.333 0.00 0.00 45.57 3.41
1295 1523 1.062440 TGTAAGCGCATTCGAGCATTG 59.938 47.619 11.47 0.00 40.96 2.82
1584 1826 1.076923 GAGCTCCCGGTACTCCTGA 60.077 63.158 0.87 0.00 0.00 3.86
1608 1850 1.080298 GTCGACGTTGAATCCCCGT 60.080 57.895 7.17 0.00 37.56 5.28
1618 1860 1.108727 TGTGTACCCTGGTCGACGTT 61.109 55.000 9.92 0.00 0.00 3.99
1779 2087 2.821366 CTGGTCATCGGCACCTGC 60.821 66.667 0.00 0.00 41.14 4.85
1846 2161 3.428999 GCTACTTCACTAAGCATGACCGA 60.429 47.826 0.00 0.00 36.05 4.69
1851 2166 2.939103 GTGGGCTACTTCACTAAGCATG 59.061 50.000 0.00 0.00 38.01 4.06
1853 2168 2.257207 AGTGGGCTACTTCACTAAGCA 58.743 47.619 0.00 0.00 41.81 3.91
1867 2195 7.230108 GGTTATTAAGGATTTAAGGTAGTGGGC 59.770 40.741 0.00 0.00 32.58 5.36
1874 2202 5.826208 CGCTGGGTTATTAAGGATTTAAGGT 59.174 40.000 0.00 0.00 32.58 3.50
1881 2209 2.748465 GCCACGCTGGGTTATTAAGGAT 60.748 50.000 0.00 0.00 38.19 3.24
1882 2210 1.407712 GCCACGCTGGGTTATTAAGGA 60.408 52.381 0.00 0.00 38.19 3.36
1883 2211 1.021968 GCCACGCTGGGTTATTAAGG 58.978 55.000 0.00 0.00 38.19 2.69
1884 2212 1.021968 GGCCACGCTGGGTTATTAAG 58.978 55.000 0.00 0.00 38.19 1.85
1885 2213 0.745128 CGGCCACGCTGGGTTATTAA 60.745 55.000 2.24 0.00 38.19 1.40
1886 2214 1.153329 CGGCCACGCTGGGTTATTA 60.153 57.895 2.24 0.00 38.19 0.98
1887 2215 2.437716 CGGCCACGCTGGGTTATT 60.438 61.111 2.24 0.00 38.19 1.40
1888 2216 3.712907 ACGGCCACGCTGGGTTAT 61.713 61.111 2.24 0.00 46.04 1.89
1889 2217 4.690719 CACGGCCACGCTGGGTTA 62.691 66.667 2.24 0.00 46.04 2.85
1917 2245 2.479837 CAAAAGCTATGGCCATGCATG 58.520 47.619 29.04 20.19 39.73 4.06
1918 2246 1.414919 CCAAAAGCTATGGCCATGCAT 59.585 47.619 29.04 18.51 39.73 3.96
1919 2247 0.825410 CCAAAAGCTATGGCCATGCA 59.175 50.000 29.04 8.41 39.73 3.96
1920 2248 0.826062 ACCAAAAGCTATGGCCATGC 59.174 50.000 29.04 26.21 41.89 4.06
1921 2249 3.264104 CAAACCAAAAGCTATGGCCATG 58.736 45.455 29.04 18.27 41.89 3.66
1922 2250 2.355007 GCAAACCAAAAGCTATGGCCAT 60.355 45.455 24.45 24.45 41.89 4.40
1923 2251 1.001860 GCAAACCAAAAGCTATGGCCA 59.998 47.619 8.56 8.56 41.89 5.36
1924 2252 1.276138 AGCAAACCAAAAGCTATGGCC 59.724 47.619 16.37 0.00 41.89 5.36
1925 2253 2.232208 AGAGCAAACCAAAAGCTATGGC 59.768 45.455 16.37 0.00 41.89 4.40
1926 2254 3.841643 CAGAGCAAACCAAAAGCTATGG 58.158 45.455 15.17 15.17 42.22 2.74
1953 2281 4.034858 CAGTACATGGCAGTAGCAAAGATG 59.965 45.833 0.00 0.00 44.61 2.90
1954 2282 4.194640 CAGTACATGGCAGTAGCAAAGAT 58.805 43.478 0.00 0.00 44.61 2.40
1955 2283 3.007940 ACAGTACATGGCAGTAGCAAAGA 59.992 43.478 0.00 0.00 44.61 2.52
1956 2284 3.125829 CACAGTACATGGCAGTAGCAAAG 59.874 47.826 0.00 0.00 44.61 2.77
1957 2285 3.073678 CACAGTACATGGCAGTAGCAAA 58.926 45.455 0.00 0.00 44.61 3.68
1958 2286 2.038426 ACACAGTACATGGCAGTAGCAA 59.962 45.455 0.00 0.00 44.61 3.91
1959 2287 1.623311 ACACAGTACATGGCAGTAGCA 59.377 47.619 0.00 0.00 44.61 3.49
1960 2288 2.002586 CACACAGTACATGGCAGTAGC 58.997 52.381 0.00 0.00 41.10 3.58
1961 2289 2.028112 ACCACACAGTACATGGCAGTAG 60.028 50.000 0.00 0.00 36.96 2.57
1962 2290 1.974957 ACCACACAGTACATGGCAGTA 59.025 47.619 0.00 0.00 36.96 2.74
1963 2291 0.764890 ACCACACAGTACATGGCAGT 59.235 50.000 0.00 0.00 36.96 4.40
1964 2292 1.159285 CACCACACAGTACATGGCAG 58.841 55.000 0.00 0.00 36.96 4.85
1965 2293 0.472044 ACACCACACAGTACATGGCA 59.528 50.000 0.00 0.00 36.96 4.92
1966 2294 0.874390 CACACCACACAGTACATGGC 59.126 55.000 0.00 0.00 36.96 4.40
1967 2295 1.522668 CCACACCACACAGTACATGG 58.477 55.000 0.00 0.00 39.57 3.66
1968 2296 0.874390 GCCACACCACACAGTACATG 59.126 55.000 0.00 0.00 0.00 3.21
1981 2327 0.168128 GCCAAGTACAATCGCCACAC 59.832 55.000 0.00 0.00 0.00 3.82
2009 2356 9.454585 CATAATTAAGTGACAATGGCATTACAG 57.545 33.333 13.23 3.34 0.00 2.74
2010 2357 8.965819 ACATAATTAAGTGACAATGGCATTACA 58.034 29.630 13.23 13.02 0.00 2.41
2020 2367 5.950758 AACCGCACATAATTAAGTGACAA 57.049 34.783 21.72 0.00 37.97 3.18
2021 2368 7.618502 AATAACCGCACATAATTAAGTGACA 57.381 32.000 21.72 4.50 37.97 3.58
2036 2383 5.559427 TTACGAGTACACTAATAACCGCA 57.441 39.130 0.00 0.00 0.00 5.69
2038 2390 7.633621 TCTCATTACGAGTACACTAATAACCG 58.366 38.462 0.00 0.00 42.88 4.44
2041 2393 9.459640 GCATTCTCATTACGAGTACACTAATAA 57.540 33.333 0.00 0.00 42.88 1.40
2042 2394 8.626526 TGCATTCTCATTACGAGTACACTAATA 58.373 33.333 0.00 0.00 42.88 0.98
2043 2395 7.489160 TGCATTCTCATTACGAGTACACTAAT 58.511 34.615 0.00 0.00 42.88 1.73
2053 2405 3.938963 GGGAAACTGCATTCTCATTACGA 59.061 43.478 0.00 0.00 29.85 3.43
2092 2444 1.216064 CCATGGGAGGGTTCATCTCA 58.784 55.000 2.85 0.00 33.18 3.27
2094 2446 2.637919 CCCATGGGAGGGTTCATCT 58.362 57.895 28.27 0.00 44.24 2.90
2102 2454 6.499106 AAAAATAAAATAGCCCATGGGAGG 57.501 37.500 36.00 8.74 37.50 4.30
2122 2474 0.889186 GTCCGGAGAGCTGGCAAAAA 60.889 55.000 3.06 0.00 40.61 1.94
2123 2475 1.302511 GTCCGGAGAGCTGGCAAAA 60.303 57.895 3.06 0.00 40.61 2.44
2124 2476 2.347490 GTCCGGAGAGCTGGCAAA 59.653 61.111 3.06 0.00 40.61 3.68
2132 2484 3.775654 GTGCCCAGGTCCGGAGAG 61.776 72.222 3.06 0.00 0.00 3.20
2133 2485 4.631740 TGTGCCCAGGTCCGGAGA 62.632 66.667 3.06 0.00 0.00 3.71
2134 2486 4.087892 CTGTGCCCAGGTCCGGAG 62.088 72.222 3.06 0.00 34.90 4.63
2135 2487 4.954118 ACTGTGCCCAGGTCCGGA 62.954 66.667 0.00 0.00 43.36 5.14
2136 2488 4.704833 CACTGTGCCCAGGTCCGG 62.705 72.222 0.05 0.00 43.36 5.14
2138 2490 4.269523 TGCACTGTGCCCAGGTCC 62.270 66.667 28.17 0.68 44.23 4.46
2139 2491 2.980233 GTGCACTGTGCCCAGGTC 60.980 66.667 28.17 9.29 44.23 3.85
2140 2492 4.586235 GGTGCACTGTGCCCAGGT 62.586 66.667 28.17 0.00 44.23 4.00
2141 2493 3.873679 ATGGTGCACTGTGCCCAGG 62.874 63.158 31.73 3.27 43.42 4.45
2142 2494 2.282674 ATGGTGCACTGTGCCCAG 60.283 61.111 31.73 0.00 43.42 4.45
2143 2495 2.282391 GATGGTGCACTGTGCCCA 60.282 61.111 31.17 31.17 44.23 5.36
2144 2496 2.282391 TGATGGTGCACTGTGCCC 60.282 61.111 28.17 26.06 44.23 5.36
2145 2497 0.679002 ATCTGATGGTGCACTGTGCC 60.679 55.000 28.17 19.06 44.23 5.01
2146 2498 0.450583 CATCTGATGGTGCACTGTGC 59.549 55.000 25.15 25.15 45.29 4.57
2147 2499 1.092348 CCATCTGATGGTGCACTGTG 58.908 55.000 25.34 2.76 45.54 3.66
2148 2500 3.564262 CCATCTGATGGTGCACTGT 57.436 52.632 25.34 5.44 45.54 3.55
2157 2509 2.636830 ACGAAGAAAGCCCATCTGATG 58.363 47.619 10.71 10.71 0.00 3.07
2158 2510 3.012518 CAACGAAGAAAGCCCATCTGAT 58.987 45.455 0.00 0.00 0.00 2.90
2159 2511 2.426522 CAACGAAGAAAGCCCATCTGA 58.573 47.619 0.00 0.00 0.00 3.27
2160 2512 1.470098 CCAACGAAGAAAGCCCATCTG 59.530 52.381 0.00 0.00 0.00 2.90
2161 2513 1.614317 CCCAACGAAGAAAGCCCATCT 60.614 52.381 0.00 0.00 0.00 2.90
2162 2514 0.811281 CCCAACGAAGAAAGCCCATC 59.189 55.000 0.00 0.00 0.00 3.51
2163 2515 1.250840 GCCCAACGAAGAAAGCCCAT 61.251 55.000 0.00 0.00 0.00 4.00
2164 2516 1.901464 GCCCAACGAAGAAAGCCCA 60.901 57.895 0.00 0.00 0.00 5.36
2165 2517 2.636412 GGCCCAACGAAGAAAGCCC 61.636 63.158 0.00 0.00 34.23 5.19
2166 2518 1.460273 TTGGCCCAACGAAGAAAGCC 61.460 55.000 0.00 0.00 40.87 4.35
2167 2519 0.387565 TTTGGCCCAACGAAGAAAGC 59.612 50.000 0.00 0.00 0.00 3.51
2168 2520 2.469826 GTTTTGGCCCAACGAAGAAAG 58.530 47.619 0.00 0.00 0.00 2.62
2169 2521 2.588027 GTTTTGGCCCAACGAAGAAA 57.412 45.000 0.00 0.00 0.00 2.52
2175 2527 3.220658 ACCCGTTTTGGCCCAACG 61.221 61.111 23.94 23.94 45.35 4.10
2176 2528 2.419620 CACCCGTTTTGGCCCAAC 59.580 61.111 0.00 2.02 35.87 3.77
2177 2529 2.840102 CCACCCGTTTTGGCCCAA 60.840 61.111 0.00 0.00 35.87 4.12
2182 2534 1.033574 TTACTTGCCACCCGTTTTGG 58.966 50.000 0.00 0.00 37.17 3.28
2183 2535 2.294791 TCATTACTTGCCACCCGTTTTG 59.705 45.455 0.00 0.00 0.00 2.44
2184 2536 2.588620 TCATTACTTGCCACCCGTTTT 58.411 42.857 0.00 0.00 0.00 2.43
2185 2537 2.279935 TCATTACTTGCCACCCGTTT 57.720 45.000 0.00 0.00 0.00 3.60
2186 2538 2.279935 TTCATTACTTGCCACCCGTT 57.720 45.000 0.00 0.00 0.00 4.44
2187 2539 1.883926 GTTTCATTACTTGCCACCCGT 59.116 47.619 0.00 0.00 0.00 5.28
2188 2540 1.201414 GGTTTCATTACTTGCCACCCG 59.799 52.381 0.00 0.00 0.00 5.28
2212 2564 9.965824 CCGCTTCAATTAATTTCACCTATATTT 57.034 29.630 0.00 0.00 0.00 1.40
2213 2565 8.576442 CCCGCTTCAATTAATTTCACCTATATT 58.424 33.333 0.00 0.00 0.00 1.28
2214 2566 7.942341 TCCCGCTTCAATTAATTTCACCTATAT 59.058 33.333 0.00 0.00 0.00 0.86
2215 2567 7.227910 GTCCCGCTTCAATTAATTTCACCTATA 59.772 37.037 0.00 0.00 0.00 1.31
2217 2569 5.355910 GTCCCGCTTCAATTAATTTCACCTA 59.644 40.000 0.00 0.00 0.00 3.08
2218 2570 4.157840 GTCCCGCTTCAATTAATTTCACCT 59.842 41.667 0.00 0.00 0.00 4.00
2220 2572 4.082463 TGGTCCCGCTTCAATTAATTTCAC 60.082 41.667 0.00 0.00 0.00 3.18
2222 2574 4.712122 TGGTCCCGCTTCAATTAATTTC 57.288 40.909 0.00 0.00 0.00 2.17
2223 2575 5.221541 TGTTTGGTCCCGCTTCAATTAATTT 60.222 36.000 0.00 0.00 0.00 1.82
2225 2577 3.829601 TGTTTGGTCCCGCTTCAATTAAT 59.170 39.130 0.00 0.00 0.00 1.40
2227 2579 2.865079 TGTTTGGTCCCGCTTCAATTA 58.135 42.857 0.00 0.00 0.00 1.40
2228 2580 1.698506 TGTTTGGTCCCGCTTCAATT 58.301 45.000 0.00 0.00 0.00 2.32
2229 2581 1.698506 TTGTTTGGTCCCGCTTCAAT 58.301 45.000 0.00 0.00 0.00 2.57
2230 2582 1.475403 TTTGTTTGGTCCCGCTTCAA 58.525 45.000 0.00 0.00 0.00 2.69
2231 2583 1.475403 TTTTGTTTGGTCCCGCTTCA 58.525 45.000 0.00 0.00 0.00 3.02
2232 2584 2.812358 ATTTTGTTTGGTCCCGCTTC 57.188 45.000 0.00 0.00 0.00 3.86
2233 2585 2.560981 CCTATTTTGTTTGGTCCCGCTT 59.439 45.455 0.00 0.00 0.00 4.68
2234 2586 2.167662 CCTATTTTGTTTGGTCCCGCT 58.832 47.619 0.00 0.00 0.00 5.52
2235 2587 2.164338 TCCTATTTTGTTTGGTCCCGC 58.836 47.619 0.00 0.00 0.00 6.13
2236 2588 4.013728 TGATCCTATTTTGTTTGGTCCCG 58.986 43.478 0.00 0.00 0.00 5.14
2237 2589 5.993748 TTGATCCTATTTTGTTTGGTCCC 57.006 39.130 0.00 0.00 0.00 4.46
2238 2590 6.163476 GGTTTGATCCTATTTTGTTTGGTCC 58.837 40.000 0.00 0.00 0.00 4.46
2239 2591 6.754193 TGGTTTGATCCTATTTTGTTTGGTC 58.246 36.000 0.00 0.00 0.00 4.02
2240 2592 6.739331 TGGTTTGATCCTATTTTGTTTGGT 57.261 33.333 0.00 0.00 0.00 3.67
2241 2593 8.443953 TTTTGGTTTGATCCTATTTTGTTTGG 57.556 30.769 0.00 0.00 0.00 3.28
2249 2601 9.492730 AGGTGATATTTTTGGTTTGATCCTATT 57.507 29.630 0.00 0.00 0.00 1.73
2250 2602 9.136323 GAGGTGATATTTTTGGTTTGATCCTAT 57.864 33.333 0.00 0.00 0.00 2.57
2251 2603 7.559897 GGAGGTGATATTTTTGGTTTGATCCTA 59.440 37.037 0.00 0.00 0.00 2.94
2252 2604 6.381133 GGAGGTGATATTTTTGGTTTGATCCT 59.619 38.462 0.00 0.00 0.00 3.24
2253 2605 6.406961 GGGAGGTGATATTTTTGGTTTGATCC 60.407 42.308 0.00 0.00 0.00 3.36
2254 2606 6.381133 AGGGAGGTGATATTTTTGGTTTGATC 59.619 38.462 0.00 0.00 0.00 2.92
2255 2607 6.263754 AGGGAGGTGATATTTTTGGTTTGAT 58.736 36.000 0.00 0.00 0.00 2.57
2256 2608 5.650283 AGGGAGGTGATATTTTTGGTTTGA 58.350 37.500 0.00 0.00 0.00 2.69
2257 2609 6.358974 AAGGGAGGTGATATTTTTGGTTTG 57.641 37.500 0.00 0.00 0.00 2.93
2258 2610 8.499288 TTAAAGGGAGGTGATATTTTTGGTTT 57.501 30.769 0.00 0.00 0.00 3.27
2259 2611 8.679344 ATTAAAGGGAGGTGATATTTTTGGTT 57.321 30.769 0.00 0.00 0.00 3.67
2260 2612 9.421399 CTATTAAAGGGAGGTGATATTTTTGGT 57.579 33.333 0.00 0.00 0.00 3.67
2261 2613 9.421399 ACTATTAAAGGGAGGTGATATTTTTGG 57.579 33.333 0.00 0.00 0.00 3.28
2265 2617 9.461734 ACCTACTATTAAAGGGAGGTGATATTT 57.538 33.333 12.46 0.00 41.67 1.40
2269 2621 9.771140 CTATACCTACTATTAAAGGGAGGTGAT 57.229 37.037 19.35 13.04 42.61 3.06
2270 2622 8.963277 TCTATACCTACTATTAAAGGGAGGTGA 58.037 37.037 19.35 9.62 42.61 4.02
2271 2623 9.771140 ATCTATACCTACTATTAAAGGGAGGTG 57.229 37.037 19.35 7.96 42.61 4.00
2308 2660 9.153479 GCTTCCTGTCCCATAATCTATATCTAT 57.847 37.037 0.00 0.00 0.00 1.98
2309 2661 7.565398 GGCTTCCTGTCCCATAATCTATATCTA 59.435 40.741 0.00 0.00 0.00 1.98
2310 2662 6.385467 GGCTTCCTGTCCCATAATCTATATCT 59.615 42.308 0.00 0.00 0.00 1.98
2311 2663 6.587273 GGCTTCCTGTCCCATAATCTATATC 58.413 44.000 0.00 0.00 0.00 1.63
2312 2664 5.129485 CGGCTTCCTGTCCCATAATCTATAT 59.871 44.000 0.00 0.00 0.00 0.86
2313 2665 4.466370 CGGCTTCCTGTCCCATAATCTATA 59.534 45.833 0.00 0.00 0.00 1.31
2314 2666 3.261897 CGGCTTCCTGTCCCATAATCTAT 59.738 47.826 0.00 0.00 0.00 1.98
2315 2667 2.632996 CGGCTTCCTGTCCCATAATCTA 59.367 50.000 0.00 0.00 0.00 1.98
2316 2668 1.417890 CGGCTTCCTGTCCCATAATCT 59.582 52.381 0.00 0.00 0.00 2.40
2317 2669 1.543429 CCGGCTTCCTGTCCCATAATC 60.543 57.143 0.00 0.00 0.00 1.75
2318 2670 0.474184 CCGGCTTCCTGTCCCATAAT 59.526 55.000 0.00 0.00 0.00 1.28
2319 2671 1.912220 CCGGCTTCCTGTCCCATAA 59.088 57.895 0.00 0.00 0.00 1.90
2320 2672 2.742116 GCCGGCTTCCTGTCCCATA 61.742 63.158 22.15 0.00 0.00 2.74
2321 2673 4.115199 GCCGGCTTCCTGTCCCAT 62.115 66.667 22.15 0.00 0.00 4.00
2325 2677 4.785453 CAGGGCCGGCTTCCTGTC 62.785 72.222 32.39 14.56 44.03 3.51
2330 2682 3.068729 GAATTGCAGGGCCGGCTTC 62.069 63.158 28.43 20.27 0.00 3.86
2331 2683 2.210144 TAGAATTGCAGGGCCGGCTT 62.210 55.000 28.43 16.09 0.00 4.35
2332 2684 2.210144 TTAGAATTGCAGGGCCGGCT 62.210 55.000 28.43 9.55 0.00 5.52
2333 2685 1.752694 TTAGAATTGCAGGGCCGGC 60.753 57.895 22.43 22.43 0.00 6.13
2334 2686 1.384222 GGTTAGAATTGCAGGGCCGG 61.384 60.000 0.00 0.00 0.00 6.13
2335 2687 0.679640 TGGTTAGAATTGCAGGGCCG 60.680 55.000 0.00 0.00 0.00 6.13
2336 2688 1.106285 CTGGTTAGAATTGCAGGGCC 58.894 55.000 0.00 0.00 0.00 5.80
2337 2689 1.745653 GTCTGGTTAGAATTGCAGGGC 59.254 52.381 0.00 0.00 34.01 5.19
2338 2690 3.012518 CAGTCTGGTTAGAATTGCAGGG 58.987 50.000 0.00 0.00 34.01 4.45
2339 2691 3.012518 CCAGTCTGGTTAGAATTGCAGG 58.987 50.000 11.09 0.00 34.01 4.85
2387 2740 1.880027 GGATTGGTCCGGAATACATGC 59.120 52.381 5.23 0.00 34.13 4.06
2407 2760 4.808895 TCCGTGAGTAATTCGAAATGGATG 59.191 41.667 0.00 0.00 0.00 3.51
2412 2765 6.579865 ACCTAATCCGTGAGTAATTCGAAAT 58.420 36.000 0.00 0.00 0.00 2.17
2421 2774 4.768448 TCAGTGAAACCTAATCCGTGAGTA 59.232 41.667 0.00 0.00 37.80 2.59
2467 2821 4.083484 ACGAAAGCTACAAATTGGTAGTGC 60.083 41.667 19.14 8.64 42.18 4.40
2468 2822 5.178623 TCACGAAAGCTACAAATTGGTAGTG 59.821 40.000 19.14 10.57 42.18 2.74
2471 2825 6.874664 TGTATCACGAAAGCTACAAATTGGTA 59.125 34.615 0.00 0.00 0.00 3.25
2478 2832 7.172532 ACTGATTTTGTATCACGAAAGCTACAA 59.827 33.333 8.32 0.00 38.38 2.41
2489 2843 9.891828 TTATTTGTGACACTGATTTTGTATCAC 57.108 29.630 7.20 0.00 40.88 3.06
2520 2874 8.940768 TTGATGTCGTGAGATTTGTATTCATA 57.059 30.769 0.00 0.00 45.19 2.15
2521 2875 7.848223 TTGATGTCGTGAGATTTGTATTCAT 57.152 32.000 0.00 0.00 45.19 2.57
2522 2876 7.848223 ATTGATGTCGTGAGATTTGTATTCA 57.152 32.000 0.00 0.00 45.19 2.57
2523 2877 9.559958 AAAATTGATGTCGTGAGATTTGTATTC 57.440 29.630 0.00 0.00 45.19 1.75
2526 2880 9.986833 CATAAAATTGATGTCGTGAGATTTGTA 57.013 29.630 0.00 0.00 45.19 2.41
2527 2881 8.514594 ACATAAAATTGATGTCGTGAGATTTGT 58.485 29.630 0.00 0.00 45.19 2.83
2528 2882 8.900511 ACATAAAATTGATGTCGTGAGATTTG 57.099 30.769 0.00 0.00 45.19 2.32
2577 2931 6.266103 ACACCATCATCATCAACTCAGTTTTT 59.734 34.615 0.00 0.00 0.00 1.94
2578 2932 5.771666 ACACCATCATCATCAACTCAGTTTT 59.228 36.000 0.00 0.00 0.00 2.43
2579 2933 5.182570 CACACCATCATCATCAACTCAGTTT 59.817 40.000 0.00 0.00 0.00 2.66
2580 2934 4.698780 CACACCATCATCATCAACTCAGTT 59.301 41.667 0.00 0.00 0.00 3.16
2581 2935 4.259356 CACACCATCATCATCAACTCAGT 58.741 43.478 0.00 0.00 0.00 3.41
2582 2936 3.064958 GCACACCATCATCATCAACTCAG 59.935 47.826 0.00 0.00 0.00 3.35
2583 2937 3.011818 GCACACCATCATCATCAACTCA 58.988 45.455 0.00 0.00 0.00 3.41
2584 2938 2.357009 GGCACACCATCATCATCAACTC 59.643 50.000 0.00 0.00 35.26 3.01
2585 2939 2.025605 AGGCACACCATCATCATCAACT 60.026 45.455 0.00 0.00 39.06 3.16
2586 2940 2.098607 CAGGCACACCATCATCATCAAC 59.901 50.000 0.00 0.00 39.06 3.18
2587 2941 2.371306 CAGGCACACCATCATCATCAA 58.629 47.619 0.00 0.00 39.06 2.57
2588 2942 2.020181 GCAGGCACACCATCATCATCA 61.020 52.381 0.00 0.00 39.06 3.07
2589 2943 0.666913 GCAGGCACACCATCATCATC 59.333 55.000 0.00 0.00 39.06 2.92
2590 2944 0.754217 GGCAGGCACACCATCATCAT 60.754 55.000 0.00 0.00 39.06 2.45
2591 2945 1.378911 GGCAGGCACACCATCATCA 60.379 57.895 0.00 0.00 39.06 3.07
2592 2946 0.754217 ATGGCAGGCACACCATCATC 60.754 55.000 0.00 0.00 42.69 2.92
2593 2947 1.308666 ATGGCAGGCACACCATCAT 59.691 52.632 0.00 0.00 42.69 2.45
2594 2948 2.765279 ATGGCAGGCACACCATCA 59.235 55.556 0.00 0.00 42.69 3.07
2597 2951 1.604308 CAAGATGGCAGGCACACCA 60.604 57.895 0.00 0.00 41.01 4.17
2598 2952 0.322456 TACAAGATGGCAGGCACACC 60.322 55.000 0.00 0.00 0.00 4.16
2599 2953 1.533625 TTACAAGATGGCAGGCACAC 58.466 50.000 0.00 0.00 0.00 3.82
2600 2954 2.512692 ATTACAAGATGGCAGGCACA 57.487 45.000 0.00 0.00 0.00 4.57
2601 2955 5.409826 GTCTATATTACAAGATGGCAGGCAC 59.590 44.000 0.00 0.00 0.00 5.01
2602 2956 5.513094 GGTCTATATTACAAGATGGCAGGCA 60.513 44.000 0.00 0.00 0.00 4.75
2603 2957 4.938226 GGTCTATATTACAAGATGGCAGGC 59.062 45.833 0.00 0.00 0.00 4.85
2604 2958 5.171476 CGGTCTATATTACAAGATGGCAGG 58.829 45.833 0.00 0.00 0.00 4.85
2605 2959 5.784177 ACGGTCTATATTACAAGATGGCAG 58.216 41.667 0.00 0.00 0.00 4.85
2606 2960 5.801531 ACGGTCTATATTACAAGATGGCA 57.198 39.130 0.00 0.00 0.00 4.92
2607 2961 5.408604 CCAACGGTCTATATTACAAGATGGC 59.591 44.000 0.00 0.00 0.00 4.40
2608 2962 6.755206 TCCAACGGTCTATATTACAAGATGG 58.245 40.000 0.00 0.00 0.00 3.51
2609 2963 8.307483 AGATCCAACGGTCTATATTACAAGATG 58.693 37.037 0.00 0.00 0.00 2.90
2610 2964 8.423906 AGATCCAACGGTCTATATTACAAGAT 57.576 34.615 0.00 0.00 0.00 2.40
2611 2965 7.834881 AGATCCAACGGTCTATATTACAAGA 57.165 36.000 0.00 0.00 0.00 3.02
2617 2971 9.922477 TGAGATATAGATCCAACGGTCTATATT 57.078 33.333 12.12 5.28 44.58 1.28
2618 2972 9.344772 GTGAGATATAGATCCAACGGTCTATAT 57.655 37.037 11.10 11.10 46.01 0.86
2619 2973 7.494952 CGTGAGATATAGATCCAACGGTCTATA 59.505 40.741 12.29 3.28 41.56 1.31
2620 2974 6.316640 CGTGAGATATAGATCCAACGGTCTAT 59.683 42.308 12.29 0.00 40.02 1.98
2621 2975 5.642491 CGTGAGATATAGATCCAACGGTCTA 59.358 44.000 12.29 0.00 37.58 2.59
2622 2976 4.456222 CGTGAGATATAGATCCAACGGTCT 59.544 45.833 12.29 0.00 37.58 3.85
2623 2977 4.454847 TCGTGAGATATAGATCCAACGGTC 59.545 45.833 17.36 0.38 39.83 4.79
2624 2978 4.395625 TCGTGAGATATAGATCCAACGGT 58.604 43.478 17.36 0.00 39.83 4.83
2625 2979 5.372547 TTCGTGAGATATAGATCCAACGG 57.627 43.478 17.36 4.89 39.83 4.44
2626 2980 7.975750 TCTATTCGTGAGATATAGATCCAACG 58.024 38.462 13.42 13.42 40.33 4.10
2629 2983 8.462811 GCTTTCTATTCGTGAGATATAGATCCA 58.537 37.037 0.00 0.00 38.62 3.41
2630 2984 8.462811 TGCTTTCTATTCGTGAGATATAGATCC 58.537 37.037 0.00 0.00 38.62 3.36
2631 2985 9.847706 TTGCTTTCTATTCGTGAGATATAGATC 57.152 33.333 0.00 0.00 38.62 2.75
2633 2987 9.464714 GTTTGCTTTCTATTCGTGAGATATAGA 57.535 33.333 0.00 0.00 41.60 1.98
2634 2988 9.469807 AGTTTGCTTTCTATTCGTGAGATATAG 57.530 33.333 0.00 0.00 41.60 1.31
2636 2990 9.988815 ATAGTTTGCTTTCTATTCGTGAGATAT 57.011 29.630 0.00 0.00 41.60 1.63
2637 2991 9.249457 CATAGTTTGCTTTCTATTCGTGAGATA 57.751 33.333 0.00 0.00 41.60 1.98
2638 2992 7.981789 TCATAGTTTGCTTTCTATTCGTGAGAT 59.018 33.333 0.00 0.00 41.60 2.75
2639 2993 7.275779 GTCATAGTTTGCTTTCTATTCGTGAGA 59.724 37.037 0.00 0.00 39.20 3.27
2640 2994 7.063426 TGTCATAGTTTGCTTTCTATTCGTGAG 59.937 37.037 0.00 0.00 0.00 3.51
2641 2995 6.871492 TGTCATAGTTTGCTTTCTATTCGTGA 59.129 34.615 0.00 0.00 0.00 4.35
2642 2996 7.060600 TGTCATAGTTTGCTTTCTATTCGTG 57.939 36.000 0.00 0.00 0.00 4.35
2643 2997 7.667043 TTGTCATAGTTTGCTTTCTATTCGT 57.333 32.000 0.00 0.00 0.00 3.85
2644 2998 9.559958 AAATTGTCATAGTTTGCTTTCTATTCG 57.440 29.630 0.00 0.00 0.00 3.34
2661 3015 8.865090 TGTGGGTATCTTTTGTAAAATTGTCAT 58.135 29.630 0.00 0.00 0.00 3.06
2662 3016 8.138712 GTGTGGGTATCTTTTGTAAAATTGTCA 58.861 33.333 0.00 0.00 0.00 3.58
2663 3017 7.597369 GGTGTGGGTATCTTTTGTAAAATTGTC 59.403 37.037 0.00 0.00 0.00 3.18
2664 3018 7.289084 AGGTGTGGGTATCTTTTGTAAAATTGT 59.711 33.333 0.00 0.00 0.00 2.71
2665 3019 7.666623 AGGTGTGGGTATCTTTTGTAAAATTG 58.333 34.615 0.00 0.00 0.00 2.32
2666 3020 7.728532 AGAGGTGTGGGTATCTTTTGTAAAATT 59.271 33.333 0.00 0.00 0.00 1.82
2667 3021 7.238710 AGAGGTGTGGGTATCTTTTGTAAAAT 58.761 34.615 0.00 0.00 0.00 1.82
2668 3022 6.607019 AGAGGTGTGGGTATCTTTTGTAAAA 58.393 36.000 0.00 0.00 0.00 1.52
2669 3023 6.043938 AGAGAGGTGTGGGTATCTTTTGTAAA 59.956 38.462 0.00 0.00 0.00 2.01
2670 3024 5.546499 AGAGAGGTGTGGGTATCTTTTGTAA 59.454 40.000 0.00 0.00 0.00 2.41
2671 3025 5.091552 AGAGAGGTGTGGGTATCTTTTGTA 58.908 41.667 0.00 0.00 0.00 2.41
2672 3026 3.910627 AGAGAGGTGTGGGTATCTTTTGT 59.089 43.478 0.00 0.00 0.00 2.83
2673 3027 4.508662 GAGAGAGGTGTGGGTATCTTTTG 58.491 47.826 0.00 0.00 0.00 2.44
2674 3028 3.519913 GGAGAGAGGTGTGGGTATCTTTT 59.480 47.826 0.00 0.00 0.00 2.27
2675 3029 3.108376 GGAGAGAGGTGTGGGTATCTTT 58.892 50.000 0.00 0.00 0.00 2.52
2676 3030 2.044492 TGGAGAGAGGTGTGGGTATCTT 59.956 50.000 0.00 0.00 0.00 2.40
2677 3031 1.646447 TGGAGAGAGGTGTGGGTATCT 59.354 52.381 0.00 0.00 0.00 1.98
2678 3032 1.757699 GTGGAGAGAGGTGTGGGTATC 59.242 57.143 0.00 0.00 0.00 2.24
2679 3033 1.078823 TGTGGAGAGAGGTGTGGGTAT 59.921 52.381 0.00 0.00 0.00 2.73
2680 3034 0.485543 TGTGGAGAGAGGTGTGGGTA 59.514 55.000 0.00 0.00 0.00 3.69
2681 3035 0.178891 ATGTGGAGAGAGGTGTGGGT 60.179 55.000 0.00 0.00 0.00 4.51
2682 3036 0.987294 AATGTGGAGAGAGGTGTGGG 59.013 55.000 0.00 0.00 0.00 4.61
2683 3037 2.867109 AAATGTGGAGAGAGGTGTGG 57.133 50.000 0.00 0.00 0.00 4.17
2684 3038 4.021104 TCTGTAAATGTGGAGAGAGGTGTG 60.021 45.833 0.00 0.00 0.00 3.82
2685 3039 4.160329 TCTGTAAATGTGGAGAGAGGTGT 58.840 43.478 0.00 0.00 0.00 4.16
2686 3040 4.808414 TCTGTAAATGTGGAGAGAGGTG 57.192 45.455 0.00 0.00 0.00 4.00
2687 3041 6.098982 CCTTATCTGTAAATGTGGAGAGAGGT 59.901 42.308 0.00 0.00 0.00 3.85
2688 3042 6.520272 CCTTATCTGTAAATGTGGAGAGAGG 58.480 44.000 0.00 0.00 0.00 3.69
2689 3043 5.988561 GCCTTATCTGTAAATGTGGAGAGAG 59.011 44.000 0.00 0.00 0.00 3.20
2690 3044 5.163301 GGCCTTATCTGTAAATGTGGAGAGA 60.163 44.000 0.00 0.00 0.00 3.10
2691 3045 5.059833 GGCCTTATCTGTAAATGTGGAGAG 58.940 45.833 0.00 0.00 0.00 3.20
2692 3046 4.721776 AGGCCTTATCTGTAAATGTGGAGA 59.278 41.667 0.00 0.00 0.00 3.71
2693 3047 5.041191 AGGCCTTATCTGTAAATGTGGAG 57.959 43.478 0.00 0.00 0.00 3.86
2694 3048 5.192927 CAAGGCCTTATCTGTAAATGTGGA 58.807 41.667 20.00 0.00 0.00 4.02
2695 3049 4.202050 GCAAGGCCTTATCTGTAAATGTGG 60.202 45.833 20.00 1.10 0.00 4.17
2696 3050 4.202050 GGCAAGGCCTTATCTGTAAATGTG 60.202 45.833 20.00 2.34 46.69 3.21
2697 3051 3.954258 GGCAAGGCCTTATCTGTAAATGT 59.046 43.478 20.00 0.00 46.69 2.71
2698 3052 4.574599 GGCAAGGCCTTATCTGTAAATG 57.425 45.455 20.00 3.17 46.69 2.32
2712 3066 1.172812 AAGGTTGAACGAGGCAAGGC 61.173 55.000 0.00 0.00 0.00 4.35
2713 3067 2.178912 TAAGGTTGAACGAGGCAAGG 57.821 50.000 0.00 0.00 0.00 3.61
2714 3068 3.600388 AGATAAGGTTGAACGAGGCAAG 58.400 45.455 0.00 0.00 0.00 4.01
2715 3069 3.596214 GAGATAAGGTTGAACGAGGCAA 58.404 45.455 0.00 0.00 0.00 4.52
2716 3070 2.093658 GGAGATAAGGTTGAACGAGGCA 60.094 50.000 0.00 0.00 0.00 4.75
2717 3071 2.552031 GGAGATAAGGTTGAACGAGGC 58.448 52.381 0.00 0.00 0.00 4.70
2718 3072 2.500098 TGGGAGATAAGGTTGAACGAGG 59.500 50.000 0.00 0.00 0.00 4.63
2719 3073 3.056107 TGTGGGAGATAAGGTTGAACGAG 60.056 47.826 0.00 0.00 0.00 4.18
2720 3074 2.901192 TGTGGGAGATAAGGTTGAACGA 59.099 45.455 0.00 0.00 0.00 3.85
2721 3075 3.328382 TGTGGGAGATAAGGTTGAACG 57.672 47.619 0.00 0.00 0.00 3.95
2722 3076 3.756963 GGTTGTGGGAGATAAGGTTGAAC 59.243 47.826 0.00 0.00 0.00 3.18
2723 3077 3.655777 AGGTTGTGGGAGATAAGGTTGAA 59.344 43.478 0.00 0.00 0.00 2.69
2724 3078 3.256704 AGGTTGTGGGAGATAAGGTTGA 58.743 45.455 0.00 0.00 0.00 3.18
2725 3079 3.009033 TGAGGTTGTGGGAGATAAGGTTG 59.991 47.826 0.00 0.00 0.00 3.77
2726 3080 3.256704 TGAGGTTGTGGGAGATAAGGTT 58.743 45.455 0.00 0.00 0.00 3.50
2727 3081 2.915869 TGAGGTTGTGGGAGATAAGGT 58.084 47.619 0.00 0.00 0.00 3.50
2728 3082 4.202441 CAATGAGGTTGTGGGAGATAAGG 58.798 47.826 0.00 0.00 33.01 2.69
2729 3083 3.629398 GCAATGAGGTTGTGGGAGATAAG 59.371 47.826 0.00 0.00 40.07 1.73
2730 3084 3.266772 AGCAATGAGGTTGTGGGAGATAA 59.733 43.478 0.00 0.00 40.07 1.75
2731 3085 2.846206 AGCAATGAGGTTGTGGGAGATA 59.154 45.455 0.00 0.00 40.07 1.98
2732 3086 1.637553 AGCAATGAGGTTGTGGGAGAT 59.362 47.619 0.00 0.00 40.07 2.75
2733 3087 1.067295 AGCAATGAGGTTGTGGGAGA 58.933 50.000 0.00 0.00 40.07 3.71
2734 3088 1.171308 CAGCAATGAGGTTGTGGGAG 58.829 55.000 0.00 0.00 40.07 4.30
2735 3089 0.770499 TCAGCAATGAGGTTGTGGGA 59.230 50.000 0.00 0.00 40.07 4.37
2736 3090 1.171308 CTCAGCAATGAGGTTGTGGG 58.829 55.000 0.00 0.00 40.07 4.61
2737 3091 0.524862 GCTCAGCAATGAGGTTGTGG 59.475 55.000 7.33 0.00 40.07 4.17
2738 3092 1.241165 TGCTCAGCAATGAGGTTGTG 58.759 50.000 0.00 0.00 40.07 3.33
2739 3093 1.985473 TTGCTCAGCAATGAGGTTGT 58.015 45.000 8.40 0.00 43.99 3.32
2762 3116 7.201857 CCAGATTGTTCCAGAGACTTTCTTTTT 60.202 37.037 0.00 0.00 32.41 1.94
2763 3117 6.264067 CCAGATTGTTCCAGAGACTTTCTTTT 59.736 38.462 0.00 0.00 32.41 2.27
2764 3118 5.767168 CCAGATTGTTCCAGAGACTTTCTTT 59.233 40.000 0.00 0.00 32.41 2.52
2765 3119 5.312079 CCAGATTGTTCCAGAGACTTTCTT 58.688 41.667 0.00 0.00 32.41 2.52
2766 3120 4.805609 GCCAGATTGTTCCAGAGACTTTCT 60.806 45.833 0.00 0.00 36.25 2.52
2767 3121 3.438434 GCCAGATTGTTCCAGAGACTTTC 59.562 47.826 0.00 0.00 0.00 2.62
2768 3122 3.181440 TGCCAGATTGTTCCAGAGACTTT 60.181 43.478 0.00 0.00 0.00 2.66
2769 3123 2.373169 TGCCAGATTGTTCCAGAGACTT 59.627 45.455 0.00 0.00 0.00 3.01
2770 3124 1.980765 TGCCAGATTGTTCCAGAGACT 59.019 47.619 0.00 0.00 0.00 3.24
2771 3125 2.479566 TGCCAGATTGTTCCAGAGAC 57.520 50.000 0.00 0.00 0.00 3.36
2772 3126 2.573009 TCATGCCAGATTGTTCCAGAGA 59.427 45.455 0.00 0.00 0.00 3.10
2773 3127 2.995283 TCATGCCAGATTGTTCCAGAG 58.005 47.619 0.00 0.00 0.00 3.35
2774 3128 3.284617 CATCATGCCAGATTGTTCCAGA 58.715 45.455 0.00 0.00 0.00 3.86
2775 3129 2.361119 CCATCATGCCAGATTGTTCCAG 59.639 50.000 0.00 0.00 0.00 3.86
2776 3130 2.380941 CCATCATGCCAGATTGTTCCA 58.619 47.619 0.00 0.00 0.00 3.53
2777 3131 1.068127 GCCATCATGCCAGATTGTTCC 59.932 52.381 0.00 0.00 0.00 3.62
2778 3132 2.503920 GCCATCATGCCAGATTGTTC 57.496 50.000 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.