Multiple sequence alignment - TraesCS7D01G161800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G161800 chr7D 100.000 2627 0 0 1 2627 111748274 111745648 0.000000e+00 4852.0
1 TraesCS7D01G161800 chr7B 88.137 1728 105 44 190 1873 71277253 71275582 0.000000e+00 1964.0
2 TraesCS7D01G161800 chr7B 87.566 756 64 15 1016 1767 428782922 428783651 0.000000e+00 848.0
3 TraesCS7D01G161800 chr7B 89.613 568 54 4 2061 2627 71256261 71255698 0.000000e+00 717.0
4 TraesCS7D01G161800 chr7B 94.545 55 3 0 1867 1921 71275563 71275509 4.660000e-13 86.1
5 TraesCS7D01G161800 chr7B 89.552 67 6 1 21 87 71277187 71277122 1.680000e-12 84.2
6 TraesCS7D01G161800 chr7A 90.909 1507 71 19 379 1825 116775607 116774107 0.000000e+00 1964.0
7 TraesCS7D01G161800 chr7A 85.464 399 30 13 2062 2449 116759046 116758665 8.820000e-105 390.0
8 TraesCS7D01G161800 chr2D 90.748 735 46 12 1033 1767 245573800 245573088 0.000000e+00 961.0
9 TraesCS7D01G161800 chr2A 87.173 764 64 20 1016 1767 424539243 424538502 0.000000e+00 837.0
10 TraesCS7D01G161800 chr2A 86.436 752 75 13 1016 1767 302435638 302436362 0.000000e+00 798.0
11 TraesCS7D01G161800 chr4A 86.037 752 78 12 1016 1767 7883571 7884295 0.000000e+00 782.0
12 TraesCS7D01G161800 chr4A 84.441 752 85 14 1016 1767 535940745 535941464 0.000000e+00 712.0
13 TraesCS7D01G161800 chr5A 84.993 753 88 11 1016 1767 222770847 222770119 0.000000e+00 741.0
14 TraesCS7D01G161800 chr6B 86.551 632 47 16 1141 1767 637178829 637179427 0.000000e+00 662.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G161800 chr7D 111745648 111748274 2626 True 4852.000000 4852 100.000000 1 2627 1 chr7D.!!$R1 2626
1 TraesCS7D01G161800 chr7B 428782922 428783651 729 False 848.000000 848 87.566000 1016 1767 1 chr7B.!!$F1 751
2 TraesCS7D01G161800 chr7B 71255698 71256261 563 True 717.000000 717 89.613000 2061 2627 1 chr7B.!!$R1 566
3 TraesCS7D01G161800 chr7B 71275509 71277253 1744 True 711.433333 1964 90.744667 21 1921 3 chr7B.!!$R2 1900
4 TraesCS7D01G161800 chr7A 116774107 116775607 1500 True 1964.000000 1964 90.909000 379 1825 1 chr7A.!!$R2 1446
5 TraesCS7D01G161800 chr2D 245573088 245573800 712 True 961.000000 961 90.748000 1033 1767 1 chr2D.!!$R1 734
6 TraesCS7D01G161800 chr2A 424538502 424539243 741 True 837.000000 837 87.173000 1016 1767 1 chr2A.!!$R1 751
7 TraesCS7D01G161800 chr2A 302435638 302436362 724 False 798.000000 798 86.436000 1016 1767 1 chr2A.!!$F1 751
8 TraesCS7D01G161800 chr4A 7883571 7884295 724 False 782.000000 782 86.037000 1016 1767 1 chr4A.!!$F1 751
9 TraesCS7D01G161800 chr4A 535940745 535941464 719 False 712.000000 712 84.441000 1016 1767 1 chr4A.!!$F2 751
10 TraesCS7D01G161800 chr5A 222770119 222770847 728 True 741.000000 741 84.993000 1016 1767 1 chr5A.!!$R1 751
11 TraesCS7D01G161800 chr6B 637178829 637179427 598 False 662.000000 662 86.551000 1141 1767 1 chr6B.!!$F1 626

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
181 182 0.032267 GATGCTACCCACTACGAGGC 59.968 60.0 0.0 0.0 0.0 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1962 2100 0.107017 CTGGTGGCGGGAGATTGATT 60.107 55.0 0.0 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.178276 TTTTTCCCACGTGTTGCTGT 58.822 45.000 15.65 0.00 0.00 4.40
20 21 1.178276 TTTTCCCACGTGTTGCTGTT 58.822 45.000 15.65 0.00 0.00 3.16
21 22 1.178276 TTTCCCACGTGTTGCTGTTT 58.822 45.000 15.65 0.00 0.00 2.83
22 23 1.178276 TTCCCACGTGTTGCTGTTTT 58.822 45.000 15.65 0.00 0.00 2.43
23 24 1.178276 TCCCACGTGTTGCTGTTTTT 58.822 45.000 15.65 0.00 0.00 1.94
24 25 1.133407 TCCCACGTGTTGCTGTTTTTC 59.867 47.619 15.65 0.00 0.00 2.29
25 26 1.134175 CCCACGTGTTGCTGTTTTTCT 59.866 47.619 15.65 0.00 0.00 2.52
26 27 2.416701 CCCACGTGTTGCTGTTTTTCTT 60.417 45.455 15.65 0.00 0.00 2.52
27 28 3.249917 CCACGTGTTGCTGTTTTTCTTT 58.750 40.909 15.65 0.00 0.00 2.52
28 29 4.416620 CCACGTGTTGCTGTTTTTCTTTA 58.583 39.130 15.65 0.00 0.00 1.85
29 30 4.264380 CCACGTGTTGCTGTTTTTCTTTAC 59.736 41.667 15.65 0.00 0.00 2.01
30 31 4.854291 CACGTGTTGCTGTTTTTCTTTACA 59.146 37.500 7.58 0.00 0.00 2.41
31 32 5.514914 CACGTGTTGCTGTTTTTCTTTACAT 59.485 36.000 7.58 0.00 0.00 2.29
32 33 6.034470 CACGTGTTGCTGTTTTTCTTTACATT 59.966 34.615 7.58 0.00 0.00 2.71
33 34 7.219154 CACGTGTTGCTGTTTTTCTTTACATTA 59.781 33.333 7.58 0.00 0.00 1.90
34 35 7.755822 ACGTGTTGCTGTTTTTCTTTACATTAA 59.244 29.630 0.00 0.00 0.00 1.40
35 36 8.751335 CGTGTTGCTGTTTTTCTTTACATTAAT 58.249 29.630 0.00 0.00 0.00 1.40
37 38 9.809096 TGTTGCTGTTTTTCTTTACATTAATCA 57.191 25.926 0.00 0.00 0.00 2.57
49 50 9.430623 TCTTTACATTAATCAACTCATCGAACA 57.569 29.630 0.00 0.00 0.00 3.18
52 53 9.599866 TTACATTAATCAACTCATCGAACATCT 57.400 29.630 0.00 0.00 0.00 2.90
53 54 8.498054 ACATTAATCAACTCATCGAACATCTT 57.502 30.769 0.00 0.00 0.00 2.40
54 55 8.950210 ACATTAATCAACTCATCGAACATCTTT 58.050 29.630 0.00 0.00 0.00 2.52
55 56 9.430838 CATTAATCAACTCATCGAACATCTTTC 57.569 33.333 0.00 0.00 0.00 2.62
56 57 8.546597 TTAATCAACTCATCGAACATCTTTCA 57.453 30.769 0.00 0.00 0.00 2.69
57 58 7.621428 AATCAACTCATCGAACATCTTTCAT 57.379 32.000 0.00 0.00 0.00 2.57
58 59 8.722480 AATCAACTCATCGAACATCTTTCATA 57.278 30.769 0.00 0.00 0.00 2.15
59 60 8.899427 ATCAACTCATCGAACATCTTTCATAT 57.101 30.769 0.00 0.00 0.00 1.78
60 61 8.134905 TCAACTCATCGAACATCTTTCATATG 57.865 34.615 0.00 0.00 0.00 1.78
61 62 7.225341 TCAACTCATCGAACATCTTTCATATGG 59.775 37.037 2.13 0.00 0.00 2.74
62 63 6.820335 ACTCATCGAACATCTTTCATATGGA 58.180 36.000 2.13 0.00 0.00 3.41
63 64 7.448420 ACTCATCGAACATCTTTCATATGGAT 58.552 34.615 2.13 0.00 0.00 3.41
64 65 7.935755 ACTCATCGAACATCTTTCATATGGATT 59.064 33.333 2.13 0.00 0.00 3.01
65 66 9.428097 CTCATCGAACATCTTTCATATGGATTA 57.572 33.333 2.13 0.00 0.00 1.75
66 67 9.208022 TCATCGAACATCTTTCATATGGATTAC 57.792 33.333 2.13 0.00 0.00 1.89
67 68 7.962964 TCGAACATCTTTCATATGGATTACC 57.037 36.000 2.13 0.00 0.00 2.85
68 69 6.934645 TCGAACATCTTTCATATGGATTACCC 59.065 38.462 2.13 0.00 34.81 3.69
69 70 6.149474 CGAACATCTTTCATATGGATTACCCC 59.851 42.308 2.13 0.00 34.81 4.95
70 71 6.529084 ACATCTTTCATATGGATTACCCCA 57.471 37.500 2.13 0.00 41.05 4.96
72 73 7.538402 ACATCTTTCATATGGATTACCCCATT 58.462 34.615 2.13 0.00 44.11 3.16
73 74 8.012477 ACATCTTTCATATGGATTACCCCATTT 58.988 33.333 2.13 0.00 44.11 2.32
74 75 9.532494 CATCTTTCATATGGATTACCCCATTTA 57.468 33.333 2.13 0.00 44.11 1.40
75 76 9.759473 ATCTTTCATATGGATTACCCCATTTAG 57.241 33.333 2.13 0.00 44.11 1.85
76 77 7.669722 TCTTTCATATGGATTACCCCATTTAGC 59.330 37.037 2.13 0.00 44.11 3.09
77 78 6.461577 TCATATGGATTACCCCATTTAGCA 57.538 37.500 2.13 0.00 44.11 3.49
78 79 6.484288 TCATATGGATTACCCCATTTAGCAG 58.516 40.000 2.13 0.00 44.11 4.24
79 80 6.274436 TCATATGGATTACCCCATTTAGCAGA 59.726 38.462 2.13 0.00 44.11 4.26
80 81 4.871871 TGGATTACCCCATTTAGCAGAA 57.128 40.909 0.00 0.00 34.81 3.02
81 82 5.199982 TGGATTACCCCATTTAGCAGAAA 57.800 39.130 0.00 0.00 34.81 2.52
82 83 5.584913 TGGATTACCCCATTTAGCAGAAAA 58.415 37.500 0.00 0.00 34.81 2.29
83 84 6.201591 TGGATTACCCCATTTAGCAGAAAAT 58.798 36.000 0.00 0.00 34.81 1.82
84 85 6.323739 TGGATTACCCCATTTAGCAGAAAATC 59.676 38.462 0.00 0.00 34.81 2.17
85 86 6.323739 GGATTACCCCATTTAGCAGAAAATCA 59.676 38.462 0.00 0.00 0.00 2.57
86 87 7.147742 GGATTACCCCATTTAGCAGAAAATCAA 60.148 37.037 0.00 0.00 0.00 2.57
87 88 7.732222 TTACCCCATTTAGCAGAAAATCAAT 57.268 32.000 0.00 0.00 0.00 2.57
88 89 8.830915 TTACCCCATTTAGCAGAAAATCAATA 57.169 30.769 0.00 0.00 0.00 1.90
89 90 7.732222 ACCCCATTTAGCAGAAAATCAATAA 57.268 32.000 0.00 0.00 0.00 1.40
90 91 7.785033 ACCCCATTTAGCAGAAAATCAATAAG 58.215 34.615 0.00 0.00 0.00 1.73
91 92 7.147672 ACCCCATTTAGCAGAAAATCAATAAGG 60.148 37.037 0.00 0.00 0.00 2.69
92 93 7.147672 CCCCATTTAGCAGAAAATCAATAAGGT 60.148 37.037 0.00 0.00 0.00 3.50
93 94 7.922811 CCCATTTAGCAGAAAATCAATAAGGTC 59.077 37.037 0.00 0.00 0.00 3.85
94 95 8.469200 CCATTTAGCAGAAAATCAATAAGGTCA 58.531 33.333 0.00 0.00 0.00 4.02
97 98 9.466497 TTTAGCAGAAAATCAATAAGGTCATCT 57.534 29.630 0.00 0.00 0.00 2.90
98 99 7.951347 AGCAGAAAATCAATAAGGTCATCTT 57.049 32.000 0.00 0.00 39.40 2.40
100 101 9.466497 AGCAGAAAATCAATAAGGTCATCTTAA 57.534 29.630 0.00 0.00 40.89 1.85
101 102 9.727627 GCAGAAAATCAATAAGGTCATCTTAAG 57.272 33.333 0.00 0.00 40.89 1.85
130 131 8.841300 ACTGATATATGATACTATGCAGTACGG 58.159 37.037 0.00 0.00 40.06 4.02
131 132 7.649057 TGATATATGATACTATGCAGTACGGC 58.351 38.462 11.37 11.37 40.06 5.68
132 133 2.699251 TGATACTATGCAGTACGGCG 57.301 50.000 13.37 4.80 40.06 6.46
133 134 2.223745 TGATACTATGCAGTACGGCGA 58.776 47.619 16.62 3.06 40.06 5.54
134 135 2.817844 TGATACTATGCAGTACGGCGAT 59.182 45.455 16.62 10.08 40.06 4.58
135 136 4.004982 TGATACTATGCAGTACGGCGATA 58.995 43.478 16.62 10.62 40.06 2.92
136 137 2.991434 ACTATGCAGTACGGCGATAG 57.009 50.000 16.62 22.75 36.28 2.08
137 138 2.228059 ACTATGCAGTACGGCGATAGT 58.772 47.619 23.57 23.57 35.37 2.12
138 139 3.405831 ACTATGCAGTACGGCGATAGTA 58.594 45.455 25.74 8.10 36.87 1.82
139 140 4.008330 ACTATGCAGTACGGCGATAGTAT 58.992 43.478 25.74 13.22 36.87 2.12
140 141 2.983402 TGCAGTACGGCGATAGTATC 57.017 50.000 16.62 0.00 36.28 2.24
141 142 2.223745 TGCAGTACGGCGATAGTATCA 58.776 47.619 16.62 4.49 36.28 2.15
142 143 2.817844 TGCAGTACGGCGATAGTATCAT 59.182 45.455 16.62 0.00 36.28 2.45
143 144 4.004982 TGCAGTACGGCGATAGTATCATA 58.995 43.478 16.62 0.00 36.28 2.15
144 145 4.638865 TGCAGTACGGCGATAGTATCATAT 59.361 41.667 16.62 0.00 36.28 1.78
145 146 4.970611 GCAGTACGGCGATAGTATCATATG 59.029 45.833 16.62 0.00 39.35 1.78
146 147 4.970611 CAGTACGGCGATAGTATCATATGC 59.029 45.833 16.62 5.27 39.35 3.14
147 148 4.638865 AGTACGGCGATAGTATCATATGCA 59.361 41.667 16.62 0.00 39.35 3.96
148 149 4.655762 ACGGCGATAGTATCATATGCAT 57.344 40.909 16.62 3.79 39.35 3.96
149 150 4.363138 ACGGCGATAGTATCATATGCATG 58.637 43.478 16.62 0.00 39.35 4.06
150 151 4.097892 ACGGCGATAGTATCATATGCATGA 59.902 41.667 16.62 0.00 41.55 3.07
151 152 5.043248 CGGCGATAGTATCATATGCATGAA 58.957 41.667 10.16 0.00 40.99 2.57
152 153 5.519927 CGGCGATAGTATCATATGCATGAAA 59.480 40.000 10.16 0.00 40.99 2.69
153 154 6.508563 CGGCGATAGTATCATATGCATGAAAC 60.509 42.308 10.16 0.53 40.99 2.78
154 155 6.406018 GCGATAGTATCATATGCATGAAACG 58.594 40.000 10.16 0.00 40.99 3.60
155 156 6.253512 GCGATAGTATCATATGCATGAAACGA 59.746 38.462 10.16 0.00 40.99 3.85
156 157 7.514280 GCGATAGTATCATATGCATGAAACGAG 60.514 40.741 10.16 0.00 40.99 4.18
157 158 5.852738 AGTATCATATGCATGAAACGAGC 57.147 39.130 10.16 0.00 44.27 5.03
158 159 5.545588 AGTATCATATGCATGAAACGAGCT 58.454 37.500 10.16 0.00 44.27 4.09
159 160 5.994054 AGTATCATATGCATGAAACGAGCTT 59.006 36.000 10.16 0.00 44.27 3.74
160 161 7.154656 AGTATCATATGCATGAAACGAGCTTA 58.845 34.615 10.16 0.00 44.27 3.09
161 162 7.821359 AGTATCATATGCATGAAACGAGCTTAT 59.179 33.333 10.16 0.00 44.27 1.73
162 163 6.232139 TCATATGCATGAAACGAGCTTATG 57.768 37.500 10.16 11.16 42.75 1.90
163 164 5.990996 TCATATGCATGAAACGAGCTTATGA 59.009 36.000 10.16 14.34 45.26 2.15
164 165 6.652062 TCATATGCATGAAACGAGCTTATGAT 59.348 34.615 10.16 0.00 43.94 2.45
165 166 4.541085 TGCATGAAACGAGCTTATGATG 57.459 40.909 0.00 0.00 0.00 3.07
166 167 3.242837 TGCATGAAACGAGCTTATGATGC 60.243 43.478 0.00 0.00 36.37 3.91
167 168 3.003068 GCATGAAACGAGCTTATGATGCT 59.997 43.478 0.00 0.00 44.24 3.79
168 169 4.212004 GCATGAAACGAGCTTATGATGCTA 59.788 41.667 0.00 0.00 41.30 3.49
169 170 5.674008 CATGAAACGAGCTTATGATGCTAC 58.326 41.667 0.00 0.00 41.30 3.58
170 171 4.119862 TGAAACGAGCTTATGATGCTACC 58.880 43.478 0.00 0.00 41.30 3.18
171 172 2.821991 ACGAGCTTATGATGCTACCC 57.178 50.000 0.00 0.00 41.30 3.69
172 173 2.039418 ACGAGCTTATGATGCTACCCA 58.961 47.619 0.00 0.00 41.30 4.51
173 174 2.224066 ACGAGCTTATGATGCTACCCAC 60.224 50.000 0.00 0.00 41.30 4.61
174 175 2.036475 CGAGCTTATGATGCTACCCACT 59.964 50.000 0.00 0.00 41.30 4.00
175 176 3.255888 CGAGCTTATGATGCTACCCACTA 59.744 47.826 0.00 0.00 41.30 2.74
176 177 4.561105 GAGCTTATGATGCTACCCACTAC 58.439 47.826 0.00 0.00 41.30 2.73
177 178 3.005897 AGCTTATGATGCTACCCACTACG 59.994 47.826 0.00 0.00 39.21 3.51
178 179 3.005472 GCTTATGATGCTACCCACTACGA 59.995 47.826 0.00 0.00 0.00 3.43
179 180 4.799678 CTTATGATGCTACCCACTACGAG 58.200 47.826 0.00 0.00 0.00 4.18
180 181 1.399714 TGATGCTACCCACTACGAGG 58.600 55.000 0.00 0.00 0.00 4.63
181 182 0.032267 GATGCTACCCACTACGAGGC 59.968 60.000 0.00 0.00 0.00 4.70
182 183 0.686441 ATGCTACCCACTACGAGGCA 60.686 55.000 0.00 0.00 0.00 4.75
183 184 0.901114 TGCTACCCACTACGAGGCAA 60.901 55.000 0.00 0.00 0.00 4.52
184 185 0.459759 GCTACCCACTACGAGGCAAC 60.460 60.000 0.00 0.00 0.00 4.17
185 186 0.175073 CTACCCACTACGAGGCAACC 59.825 60.000 0.00 0.00 37.17 3.77
186 187 0.251922 TACCCACTACGAGGCAACCT 60.252 55.000 0.00 0.00 36.03 3.50
187 188 1.125711 ACCCACTACGAGGCAACCTT 61.126 55.000 0.00 0.00 31.76 3.50
188 189 0.899720 CCCACTACGAGGCAACCTTA 59.100 55.000 0.00 0.00 31.76 2.69
189 190 1.134788 CCCACTACGAGGCAACCTTAG 60.135 57.143 0.00 0.00 31.76 2.18
190 191 1.822990 CCACTACGAGGCAACCTTAGA 59.177 52.381 0.00 0.00 31.76 2.10
191 192 2.416972 CCACTACGAGGCAACCTTAGAC 60.417 54.545 0.00 0.00 31.76 2.59
192 193 1.471684 ACTACGAGGCAACCTTAGACG 59.528 52.381 0.00 0.00 31.76 4.18
193 194 0.813184 TACGAGGCAACCTTAGACGG 59.187 55.000 0.00 0.00 31.76 4.79
207 208 7.373778 ACCTTAGACGGCTAAAGTTAAATTG 57.626 36.000 12.76 0.00 36.24 2.32
209 210 7.446319 ACCTTAGACGGCTAAAGTTAAATTGTT 59.554 33.333 12.76 0.00 36.24 2.83
230 231 6.744112 TGTTCAATTTTAAGCGAATTCCAGT 58.256 32.000 0.00 0.00 0.00 4.00
235 236 9.751542 TCAATTTTAAGCGAATTCCAGTTTTTA 57.248 25.926 0.00 0.00 0.00 1.52
236 237 9.791838 CAATTTTAAGCGAATTCCAGTTTTTAC 57.208 29.630 0.00 0.00 0.00 2.01
239 240 3.492337 AGCGAATTCCAGTTTTTACCCA 58.508 40.909 0.00 0.00 0.00 4.51
240 241 4.086457 AGCGAATTCCAGTTTTTACCCAT 58.914 39.130 0.00 0.00 0.00 4.00
241 242 5.258051 AGCGAATTCCAGTTTTTACCCATA 58.742 37.500 0.00 0.00 0.00 2.74
244 245 7.039270 GCGAATTCCAGTTTTTACCCATAATT 58.961 34.615 0.00 0.00 0.00 1.40
245 246 8.192110 GCGAATTCCAGTTTTTACCCATAATTA 58.808 33.333 0.00 0.00 0.00 1.40
310 313 6.857848 TCATATGGATTACCCCATTTAGCAA 58.142 36.000 2.13 0.00 44.11 3.91
313 316 8.596293 CATATGGATTACCCCATTTAGCAAAAT 58.404 33.333 0.00 0.00 44.11 1.82
314 317 9.836179 ATATGGATTACCCCATTTAGCAAAATA 57.164 29.630 0.00 0.00 44.11 1.40
315 318 7.354751 TGGATTACCCCATTTAGCAAAATAC 57.645 36.000 0.00 0.00 32.89 1.89
316 319 6.897966 TGGATTACCCCATTTAGCAAAATACA 59.102 34.615 0.00 0.00 32.89 2.29
317 320 7.069331 TGGATTACCCCATTTAGCAAAATACAG 59.931 37.037 0.00 0.00 32.89 2.74
318 321 7.069455 GGATTACCCCATTTAGCAAAATACAGT 59.931 37.037 0.00 0.00 33.45 3.55
324 327 9.965824 CCCCATTTAGCAAAATACAGTATTAAG 57.034 33.333 6.22 3.81 33.45 1.85
332 335 9.014297 AGCAAAATACAGTATTAAGCTGTCTTT 57.986 29.630 22.38 15.22 44.96 2.52
338 341 6.958767 ACAGTATTAAGCTGTCTTTACCCAT 58.041 36.000 9.00 0.00 42.90 4.00
341 344 7.225538 CAGTATTAAGCTGTCTTTACCCATCAG 59.774 40.741 0.00 0.00 33.85 2.90
348 351 6.384305 AGCTGTCTTTACCCATCAGTTATACT 59.616 38.462 0.00 0.00 0.00 2.12
349 352 7.563924 AGCTGTCTTTACCCATCAGTTATACTA 59.436 37.037 0.00 0.00 0.00 1.82
350 353 8.368668 GCTGTCTTTACCCATCAGTTATACTAT 58.631 37.037 0.00 0.00 0.00 2.12
412 419 4.929211 CCCAAAAATCCAAACCGAATCTTC 59.071 41.667 0.00 0.00 0.00 2.87
414 421 6.165577 CCAAAAATCCAAACCGAATCTTCAT 58.834 36.000 0.00 0.00 0.00 2.57
486 499 2.553727 TTGGTTTACCGGTTGCCGC 61.554 57.895 15.04 0.00 46.86 6.53
487 500 2.979120 GGTTTACCGGTTGCCGCA 60.979 61.111 15.04 0.00 46.86 5.69
488 501 2.337246 GGTTTACCGGTTGCCGCAT 61.337 57.895 15.04 0.00 46.86 4.73
524 541 1.520787 CCATGGCGTCGGGAAGTAC 60.521 63.158 0.00 0.00 0.00 2.73
631 648 2.870372 GTACCAGCTGCCGCAAAG 59.130 61.111 8.66 0.00 39.10 2.77
803 839 5.424573 TCACTTCTTCTCATGTCCTCATCAT 59.575 40.000 0.00 0.00 31.15 2.45
815 851 0.729116 CTCATCATCACGCCGCTTTT 59.271 50.000 0.00 0.00 0.00 2.27
825 861 4.293671 CCGCTTTTCCCACCCCCA 62.294 66.667 0.00 0.00 0.00 4.96
828 864 1.152333 GCTTTTCCCACCCCCACTT 60.152 57.895 0.00 0.00 0.00 3.16
830 866 0.541998 CTTTTCCCACCCCCACTTCC 60.542 60.000 0.00 0.00 0.00 3.46
831 867 2.360439 TTTTCCCACCCCCACTTCCG 62.360 60.000 0.00 0.00 0.00 4.30
832 868 3.795977 TTCCCACCCCCACTTCCGA 62.796 63.158 0.00 0.00 0.00 4.55
833 869 3.717294 CCCACCCCCACTTCCGAG 61.717 72.222 0.00 0.00 0.00 4.63
834 870 4.410400 CCACCCCCACTTCCGAGC 62.410 72.222 0.00 0.00 0.00 5.03
835 871 4.410400 CACCCCCACTTCCGAGCC 62.410 72.222 0.00 0.00 0.00 4.70
844 880 4.543689 CCCACTTCCGAGCCCTATATATA 58.456 47.826 0.00 0.00 0.00 0.86
847 883 4.341520 CACTTCCGAGCCCTATATATACCC 59.658 50.000 0.00 0.00 0.00 3.69
875 911 1.596477 GCGCCATCCTCATCCTCAC 60.596 63.158 0.00 0.00 0.00 3.51
877 913 1.689243 CGCCATCCTCATCCTCACCA 61.689 60.000 0.00 0.00 0.00 4.17
879 915 1.476471 GCCATCCTCATCCTCACCAAG 60.476 57.143 0.00 0.00 0.00 3.61
880 916 1.842562 CCATCCTCATCCTCACCAAGT 59.157 52.381 0.00 0.00 0.00 3.16
881 917 2.158842 CCATCCTCATCCTCACCAAGTC 60.159 54.545 0.00 0.00 0.00 3.01
882 918 1.573108 TCCTCATCCTCACCAAGTCC 58.427 55.000 0.00 0.00 0.00 3.85
883 919 1.203300 TCCTCATCCTCACCAAGTCCA 60.203 52.381 0.00 0.00 0.00 4.02
884 920 1.630369 CCTCATCCTCACCAAGTCCAA 59.370 52.381 0.00 0.00 0.00 3.53
885 921 2.040278 CCTCATCCTCACCAAGTCCAAA 59.960 50.000 0.00 0.00 0.00 3.28
886 922 3.341823 CTCATCCTCACCAAGTCCAAAG 58.658 50.000 0.00 0.00 0.00 2.77
887 923 2.711009 TCATCCTCACCAAGTCCAAAGT 59.289 45.455 0.00 0.00 0.00 2.66
924 967 2.432510 CGAATCCTTCCTTCTGCTACCT 59.567 50.000 0.00 0.00 0.00 3.08
925 968 3.739519 CGAATCCTTCCTTCTGCTACCTG 60.740 52.174 0.00 0.00 0.00 4.00
929 972 2.111384 CTTCCTTCTGCTACCTGCCTA 58.889 52.381 0.00 0.00 42.00 3.93
951 994 2.222663 CGTGATCAGCAGTCAACAATCG 60.223 50.000 0.00 0.00 0.00 3.34
1021 1080 3.394836 AGGCCCTCTTCGACCAGC 61.395 66.667 0.00 0.00 0.00 4.85
1026 1085 2.492090 CTCTTCGACCAGCCCGAG 59.508 66.667 0.00 0.00 37.35 4.63
1299 1373 4.719369 GGAGAGCGGTGCGTCGTT 62.719 66.667 0.00 0.00 0.00 3.85
1677 1777 3.506067 ACCGTCCCTTGATTGATTTGTTC 59.494 43.478 0.00 0.00 0.00 3.18
1725 1830 5.466058 TCACCATGATTTGTTGATTTGTTGC 59.534 36.000 0.00 0.00 0.00 4.17
1731 1841 9.320406 CATGATTTGTTGATTTGTTGCATTTAC 57.680 29.630 0.00 0.00 0.00 2.01
1793 1905 1.341852 TCCACGTCAACCGATTCTGAA 59.658 47.619 0.00 0.00 40.70 3.02
1799 1911 3.301835 CGTCAACCGATTCTGAAATAGCG 60.302 47.826 0.00 0.00 39.56 4.26
1830 1942 7.447545 ACATTCACATTACTCGACCTAGCTATA 59.552 37.037 0.00 0.00 0.00 1.31
1831 1943 7.997773 TTCACATTACTCGACCTAGCTATAT 57.002 36.000 0.00 0.00 0.00 0.86
1832 1944 9.682465 ATTCACATTACTCGACCTAGCTATATA 57.318 33.333 0.00 0.00 0.00 0.86
1833 1945 9.682465 TTCACATTACTCGACCTAGCTATATAT 57.318 33.333 0.00 0.00 0.00 0.86
1836 1948 6.939132 TTACTCGACCTAGCTATATATGGC 57.061 41.667 12.86 12.86 34.12 4.40
1840 1952 3.243569 CGACCTAGCTATATATGGCAGCC 60.244 52.174 21.51 3.66 36.66 4.85
1849 1961 6.157645 AGCTATATATGGCAGCCTGAATTAGT 59.842 38.462 21.51 0.00 36.66 2.24
1850 1962 7.345653 AGCTATATATGGCAGCCTGAATTAGTA 59.654 37.037 21.51 0.00 36.66 1.82
1851 1963 7.655328 GCTATATATGGCAGCCTGAATTAGTAG 59.345 40.741 14.15 6.20 34.10 2.57
1852 1964 3.498774 ATGGCAGCCTGAATTAGTAGG 57.501 47.619 14.15 0.00 37.14 3.18
1904 2042 0.384309 TCGGATCGGAACTTCGGATG 59.616 55.000 14.72 4.17 36.70 3.51
1908 2046 2.297597 GGATCGGAACTTCGGATGAGAT 59.702 50.000 14.72 0.00 36.70 2.75
1910 2048 1.202417 TCGGAACTTCGGATGAGATGC 60.202 52.381 0.00 0.00 0.00 3.91
1921 2059 3.380142 GGATGAGATGCTCTTCTTCGTC 58.620 50.000 9.32 0.00 35.73 4.20
1922 2060 2.551355 TGAGATGCTCTTCTTCGTCG 57.449 50.000 0.00 0.00 0.00 5.12
1923 2061 1.813178 TGAGATGCTCTTCTTCGTCGT 59.187 47.619 0.00 0.00 0.00 4.34
1924 2062 2.159503 TGAGATGCTCTTCTTCGTCGTC 60.160 50.000 0.00 0.00 0.00 4.20
1925 2063 1.184349 GATGCTCTTCTTCGTCGTCG 58.816 55.000 0.00 0.00 38.55 5.12
1926 2064 0.803117 ATGCTCTTCTTCGTCGTCGA 59.197 50.000 0.00 0.00 44.66 4.20
1927 2065 0.803117 TGCTCTTCTTCGTCGTCGAT 59.197 50.000 5.44 0.00 45.65 3.59
1928 2066 1.199327 TGCTCTTCTTCGTCGTCGATT 59.801 47.619 5.44 0.00 45.65 3.34
1929 2067 2.417586 TGCTCTTCTTCGTCGTCGATTA 59.582 45.455 5.44 0.00 45.65 1.75
1930 2068 2.777305 GCTCTTCTTCGTCGTCGATTAC 59.223 50.000 5.44 0.00 45.65 1.89
1942 2080 2.933495 TCGATTACGACTTGGACTGG 57.067 50.000 0.00 0.00 43.81 4.00
1943 2081 2.439409 TCGATTACGACTTGGACTGGA 58.561 47.619 0.00 0.00 43.81 3.86
1944 2082 3.021695 TCGATTACGACTTGGACTGGAT 58.978 45.455 0.00 0.00 43.81 3.41
1945 2083 3.116300 CGATTACGACTTGGACTGGATG 58.884 50.000 0.00 0.00 42.66 3.51
1946 2084 3.428999 CGATTACGACTTGGACTGGATGT 60.429 47.826 0.00 0.00 42.66 3.06
1947 2085 4.504858 GATTACGACTTGGACTGGATGTT 58.495 43.478 0.00 0.00 0.00 2.71
1948 2086 2.457366 ACGACTTGGACTGGATGTTC 57.543 50.000 0.00 0.00 0.00 3.18
1949 2087 1.002087 ACGACTTGGACTGGATGTTCC 59.998 52.381 0.00 0.00 36.96 3.62
1950 2088 1.676014 CGACTTGGACTGGATGTTCCC 60.676 57.143 0.00 0.00 35.03 3.97
1951 2089 0.698818 ACTTGGACTGGATGTTCCCC 59.301 55.000 0.00 0.00 35.03 4.81
1952 2090 0.995024 CTTGGACTGGATGTTCCCCT 59.005 55.000 0.00 0.00 35.03 4.79
1953 2091 0.991920 TTGGACTGGATGTTCCCCTC 59.008 55.000 0.00 0.00 35.03 4.30
1954 2092 0.119155 TGGACTGGATGTTCCCCTCT 59.881 55.000 0.00 0.00 35.03 3.69
1955 2093 1.364678 TGGACTGGATGTTCCCCTCTA 59.635 52.381 0.00 0.00 35.03 2.43
1956 2094 1.763545 GGACTGGATGTTCCCCTCTAC 59.236 57.143 0.00 0.00 35.03 2.59
1957 2095 2.627217 GGACTGGATGTTCCCCTCTACT 60.627 54.545 0.00 0.00 35.03 2.57
1958 2096 2.432510 GACTGGATGTTCCCCTCTACTG 59.567 54.545 0.00 0.00 35.03 2.74
1959 2097 2.044492 ACTGGATGTTCCCCTCTACTGA 59.956 50.000 0.00 0.00 35.03 3.41
1960 2098 3.310954 ACTGGATGTTCCCCTCTACTGAT 60.311 47.826 0.00 0.00 35.03 2.90
1961 2099 4.078571 ACTGGATGTTCCCCTCTACTGATA 60.079 45.833 0.00 0.00 35.03 2.15
1962 2100 4.890988 TGGATGTTCCCCTCTACTGATAA 58.109 43.478 0.00 0.00 35.03 1.75
1963 2101 5.285401 TGGATGTTCCCCTCTACTGATAAA 58.715 41.667 0.00 0.00 35.03 1.40
1964 2102 5.911178 TGGATGTTCCCCTCTACTGATAAAT 59.089 40.000 0.00 0.00 35.03 1.40
1965 2103 6.043243 TGGATGTTCCCCTCTACTGATAAATC 59.957 42.308 0.00 0.00 35.03 2.17
1966 2104 6.043243 GGATGTTCCCCTCTACTGATAAATCA 59.957 42.308 0.00 0.00 35.16 2.57
1967 2105 6.884472 TGTTCCCCTCTACTGATAAATCAA 57.116 37.500 0.00 0.00 36.18 2.57
1968 2106 7.451731 TGTTCCCCTCTACTGATAAATCAAT 57.548 36.000 0.00 0.00 36.18 2.57
1969 2107 7.509546 TGTTCCCCTCTACTGATAAATCAATC 58.490 38.462 0.00 0.00 36.18 2.67
1970 2108 7.348274 TGTTCCCCTCTACTGATAAATCAATCT 59.652 37.037 0.00 0.00 36.18 2.40
1971 2109 7.546250 TCCCCTCTACTGATAAATCAATCTC 57.454 40.000 0.00 0.00 36.18 2.75
1972 2110 6.498651 TCCCCTCTACTGATAAATCAATCTCC 59.501 42.308 0.00 0.00 36.18 3.71
1973 2111 6.296145 CCCCTCTACTGATAAATCAATCTCCC 60.296 46.154 0.00 0.00 36.18 4.30
1974 2112 6.393990 CCTCTACTGATAAATCAATCTCCCG 58.606 44.000 0.00 0.00 36.18 5.14
1975 2113 5.784177 TCTACTGATAAATCAATCTCCCGC 58.216 41.667 0.00 0.00 36.18 6.13
1976 2114 3.744660 ACTGATAAATCAATCTCCCGCC 58.255 45.455 0.00 0.00 36.18 6.13
1977 2115 3.136443 ACTGATAAATCAATCTCCCGCCA 59.864 43.478 0.00 0.00 36.18 5.69
1978 2116 3.476552 TGATAAATCAATCTCCCGCCAC 58.523 45.455 0.00 0.00 33.08 5.01
1979 2117 2.341846 TAAATCAATCTCCCGCCACC 57.658 50.000 0.00 0.00 0.00 4.61
1980 2118 0.331278 AAATCAATCTCCCGCCACCA 59.669 50.000 0.00 0.00 0.00 4.17
1981 2119 0.107017 AATCAATCTCCCGCCACCAG 60.107 55.000 0.00 0.00 0.00 4.00
1982 2120 0.982852 ATCAATCTCCCGCCACCAGA 60.983 55.000 0.00 0.00 0.00 3.86
1983 2121 1.450312 CAATCTCCCGCCACCAGAC 60.450 63.158 0.00 0.00 0.00 3.51
1984 2122 2.670148 AATCTCCCGCCACCAGACC 61.670 63.158 0.00 0.00 0.00 3.85
1985 2123 3.924013 ATCTCCCGCCACCAGACCA 62.924 63.158 0.00 0.00 0.00 4.02
1986 2124 4.087892 CTCCCGCCACCAGACCAG 62.088 72.222 0.00 0.00 0.00 4.00
1991 2129 4.314440 GCCACCAGACCAGCGTCA 62.314 66.667 0.00 0.00 41.87 4.35
1992 2130 2.357517 CCACCAGACCAGCGTCAC 60.358 66.667 0.00 0.00 41.87 3.67
1993 2131 2.737180 CACCAGACCAGCGTCACT 59.263 61.111 0.00 0.00 41.87 3.41
1994 2132 1.069765 CACCAGACCAGCGTCACTT 59.930 57.895 0.00 0.00 41.87 3.16
1995 2133 0.946221 CACCAGACCAGCGTCACTTC 60.946 60.000 0.00 0.00 41.87 3.01
1996 2134 1.367471 CCAGACCAGCGTCACTTCA 59.633 57.895 0.00 0.00 41.87 3.02
1997 2135 0.668706 CCAGACCAGCGTCACTTCAG 60.669 60.000 0.00 0.00 41.87 3.02
1998 2136 0.315251 CAGACCAGCGTCACTTCAGA 59.685 55.000 0.00 0.00 41.87 3.27
1999 2137 1.040646 AGACCAGCGTCACTTCAGAA 58.959 50.000 0.00 0.00 41.87 3.02
2000 2138 1.620819 AGACCAGCGTCACTTCAGAAT 59.379 47.619 0.00 0.00 41.87 2.40
2001 2139 1.996191 GACCAGCGTCACTTCAGAATC 59.004 52.381 0.00 0.00 38.99 2.52
2002 2140 1.338200 ACCAGCGTCACTTCAGAATCC 60.338 52.381 0.00 0.00 0.00 3.01
2003 2141 1.338105 CCAGCGTCACTTCAGAATCCA 60.338 52.381 0.00 0.00 0.00 3.41
2004 2142 2.416747 CAGCGTCACTTCAGAATCCAA 58.583 47.619 0.00 0.00 0.00 3.53
2005 2143 3.005554 CAGCGTCACTTCAGAATCCAAT 58.994 45.455 0.00 0.00 0.00 3.16
2006 2144 3.063180 CAGCGTCACTTCAGAATCCAATC 59.937 47.826 0.00 0.00 0.00 2.67
2007 2145 3.055530 AGCGTCACTTCAGAATCCAATCT 60.056 43.478 0.00 0.00 0.00 2.40
2008 2146 3.686726 GCGTCACTTCAGAATCCAATCTT 59.313 43.478 0.00 0.00 0.00 2.40
2009 2147 4.201763 GCGTCACTTCAGAATCCAATCTTC 60.202 45.833 0.00 0.00 0.00 2.87
2010 2148 4.331168 CGTCACTTCAGAATCCAATCTTCC 59.669 45.833 0.00 0.00 0.00 3.46
2011 2149 4.331168 GTCACTTCAGAATCCAATCTTCCG 59.669 45.833 0.00 0.00 0.00 4.30
2012 2150 4.222810 TCACTTCAGAATCCAATCTTCCGA 59.777 41.667 0.00 0.00 0.00 4.55
2013 2151 4.937620 CACTTCAGAATCCAATCTTCCGAA 59.062 41.667 0.00 0.00 0.00 4.30
2014 2152 5.587844 CACTTCAGAATCCAATCTTCCGAAT 59.412 40.000 0.00 0.00 0.00 3.34
2015 2153 6.094603 CACTTCAGAATCCAATCTTCCGAATT 59.905 38.462 0.00 0.00 0.00 2.17
2016 2154 6.317391 ACTTCAGAATCCAATCTTCCGAATTC 59.683 38.462 0.00 0.00 0.00 2.17
2017 2155 5.126067 TCAGAATCCAATCTTCCGAATTCC 58.874 41.667 0.00 0.00 0.00 3.01
2018 2156 4.024556 CAGAATCCAATCTTCCGAATTCCG 60.025 45.833 0.00 0.00 38.18 4.30
2019 2157 3.838244 ATCCAATCTTCCGAATTCCGA 57.162 42.857 0.00 0.00 41.76 4.55
2020 2158 3.838244 TCCAATCTTCCGAATTCCGAT 57.162 42.857 0.00 0.00 41.76 4.18
2021 2159 4.150897 TCCAATCTTCCGAATTCCGATT 57.849 40.909 0.00 1.17 41.76 3.34
2022 2160 5.284861 TCCAATCTTCCGAATTCCGATTA 57.715 39.130 0.00 0.00 41.76 1.75
2023 2161 5.297547 TCCAATCTTCCGAATTCCGATTAG 58.702 41.667 0.00 0.00 41.76 1.73
2024 2162 4.452455 CCAATCTTCCGAATTCCGATTAGG 59.548 45.833 0.00 0.00 41.76 2.69
2025 2163 3.107642 TCTTCCGAATTCCGATTAGGC 57.892 47.619 0.00 0.00 41.76 3.93
2026 2164 2.698797 TCTTCCGAATTCCGATTAGGCT 59.301 45.455 0.00 0.00 41.76 4.58
2027 2165 2.526304 TCCGAATTCCGATTAGGCTG 57.474 50.000 0.00 0.00 41.76 4.85
2028 2166 2.036387 TCCGAATTCCGATTAGGCTGA 58.964 47.619 0.00 0.00 41.76 4.26
2029 2167 2.632996 TCCGAATTCCGATTAGGCTGAT 59.367 45.455 0.00 0.00 41.76 2.90
2030 2168 2.996621 CCGAATTCCGATTAGGCTGATC 59.003 50.000 9.11 9.11 41.76 2.92
2031 2169 3.554960 CCGAATTCCGATTAGGCTGATCA 60.555 47.826 18.07 0.00 41.76 2.92
2032 2170 3.677121 CGAATTCCGATTAGGCTGATCAG 59.323 47.826 18.84 18.84 41.76 2.90
2033 2171 3.692257 ATTCCGATTAGGCTGATCAGG 57.308 47.619 23.89 17.88 40.77 3.86
2034 2172 2.381752 TCCGATTAGGCTGATCAGGA 57.618 50.000 23.89 20.54 40.77 3.86
2035 2173 2.894731 TCCGATTAGGCTGATCAGGAT 58.105 47.619 23.89 1.19 40.77 3.24
2036 2174 2.828520 TCCGATTAGGCTGATCAGGATC 59.171 50.000 23.89 7.53 40.77 3.36
2037 2175 2.564504 CCGATTAGGCTGATCAGGATCA 59.435 50.000 23.89 11.22 44.83 2.92
2045 2183 0.683412 TGATCAGGATCAGCGATGGG 59.317 55.000 7.86 0.00 42.42 4.00
2046 2184 0.673022 GATCAGGATCAGCGATGGGC 60.673 60.000 0.00 0.00 44.05 5.36
2078 2216 3.075641 GGGGTCCTCCTCCACGTC 61.076 72.222 0.00 0.00 35.33 4.34
2082 2220 1.674980 GTCCTCCTCCACGTCGTCT 60.675 63.158 0.00 0.00 0.00 4.18
2112 2250 4.436998 CGGGAGTGGGACTGCGAC 62.437 72.222 0.00 0.00 37.44 5.19
2165 2304 2.610433 GAAGCAGCACCTTTATTTGGC 58.390 47.619 0.00 0.00 0.00 4.52
2182 2321 2.278206 CGCTGGATGACTCGACGG 60.278 66.667 0.00 0.00 0.00 4.79
2192 2331 4.554363 CTCGACGGGCGGCTACAG 62.554 72.222 9.56 0.63 41.33 2.74
2196 2335 4.530857 ACGGGCGGCTACAGCATC 62.531 66.667 9.56 0.00 44.36 3.91
2214 2353 0.388134 TCTACAAGCTTGACGCCGAC 60.388 55.000 32.50 0.00 40.39 4.79
2283 2422 1.598962 CGCTGCCATCCGGATGAAT 60.599 57.895 40.01 7.89 41.20 2.57
2407 2546 2.400399 CAACCATCGTCTACAACACGT 58.600 47.619 0.00 0.00 38.45 4.49
2461 2600 4.052518 CTGGGGTCCCTGCCTTGG 62.053 72.222 8.15 0.00 36.94 3.61
2499 2638 1.940613 GGTGGAAAGCTATACGCCTTG 59.059 52.381 6.76 0.00 40.39 3.61
2531 2670 3.060615 CAGCTTGCAGGCCCTGTC 61.061 66.667 18.27 5.41 33.43 3.51
2532 2671 4.711949 AGCTTGCAGGCCCTGTCG 62.712 66.667 18.27 2.20 33.43 4.35
2534 2673 2.743928 CTTGCAGGCCCTGTCGTC 60.744 66.667 13.35 0.00 33.43 4.20
2558 2697 1.546476 GGCTCCCATCGACGATAGATT 59.454 52.381 10.57 0.00 41.38 2.40
2561 2700 3.671971 GCTCCCATCGACGATAGATTGAG 60.672 52.174 10.57 12.08 41.38 3.02
2601 2740 4.953868 TGGAACACCGTGCCGTCG 62.954 66.667 0.00 0.00 32.81 5.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.178276 ACAGCAACACGTGGGAAAAA 58.822 45.000 21.57 0.00 0.00 1.94
1 2 1.178276 AACAGCAACACGTGGGAAAA 58.822 45.000 21.57 0.00 0.00 2.29
2 3 1.178276 AAACAGCAACACGTGGGAAA 58.822 45.000 21.57 0.00 0.00 3.13
3 4 1.178276 AAAACAGCAACACGTGGGAA 58.822 45.000 21.57 0.00 0.00 3.97
4 5 1.133407 GAAAAACAGCAACACGTGGGA 59.867 47.619 21.57 0.00 0.00 4.37
5 6 1.134175 AGAAAAACAGCAACACGTGGG 59.866 47.619 21.57 12.76 0.00 4.61
6 7 2.559998 AGAAAAACAGCAACACGTGG 57.440 45.000 21.57 3.72 0.00 4.94
7 8 4.854291 TGTAAAGAAAAACAGCAACACGTG 59.146 37.500 15.48 15.48 0.00 4.49
8 9 5.049398 TGTAAAGAAAAACAGCAACACGT 57.951 34.783 0.00 0.00 0.00 4.49
9 10 6.567769 AATGTAAAGAAAAACAGCAACACG 57.432 33.333 0.00 0.00 0.00 4.49
11 12 9.809096 TGATTAATGTAAAGAAAAACAGCAACA 57.191 25.926 0.00 0.00 0.00 3.33
23 24 9.430623 TGTTCGATGAGTTGATTAATGTAAAGA 57.569 29.630 0.00 0.00 0.00 2.52
26 27 9.599866 AGATGTTCGATGAGTTGATTAATGTAA 57.400 29.630 0.00 0.00 0.00 2.41
27 28 9.599866 AAGATGTTCGATGAGTTGATTAATGTA 57.400 29.630 0.00 0.00 0.00 2.29
28 29 8.498054 AAGATGTTCGATGAGTTGATTAATGT 57.502 30.769 0.00 0.00 0.00 2.71
29 30 9.430838 GAAAGATGTTCGATGAGTTGATTAATG 57.569 33.333 0.00 0.00 0.00 1.90
30 31 9.166173 TGAAAGATGTTCGATGAGTTGATTAAT 57.834 29.630 0.00 0.00 0.00 1.40
31 32 8.546597 TGAAAGATGTTCGATGAGTTGATTAA 57.453 30.769 0.00 0.00 0.00 1.40
32 33 8.722480 ATGAAAGATGTTCGATGAGTTGATTA 57.278 30.769 0.00 0.00 0.00 1.75
33 34 7.621428 ATGAAAGATGTTCGATGAGTTGATT 57.379 32.000 0.00 0.00 0.00 2.57
34 35 8.771766 CATATGAAAGATGTTCGATGAGTTGAT 58.228 33.333 0.00 0.00 0.00 2.57
35 36 7.225341 CCATATGAAAGATGTTCGATGAGTTGA 59.775 37.037 3.65 0.00 0.00 3.18
36 37 7.225341 TCCATATGAAAGATGTTCGATGAGTTG 59.775 37.037 3.65 0.00 0.00 3.16
37 38 7.275183 TCCATATGAAAGATGTTCGATGAGTT 58.725 34.615 3.65 0.00 0.00 3.01
38 39 6.820335 TCCATATGAAAGATGTTCGATGAGT 58.180 36.000 3.65 0.00 0.00 3.41
39 40 7.902387 ATCCATATGAAAGATGTTCGATGAG 57.098 36.000 3.65 0.00 0.00 2.90
40 41 9.208022 GTAATCCATATGAAAGATGTTCGATGA 57.792 33.333 3.65 0.00 0.00 2.92
41 42 8.446273 GGTAATCCATATGAAAGATGTTCGATG 58.554 37.037 3.65 0.00 0.00 3.84
42 43 7.607991 GGGTAATCCATATGAAAGATGTTCGAT 59.392 37.037 3.65 0.00 35.00 3.59
43 44 6.934645 GGGTAATCCATATGAAAGATGTTCGA 59.065 38.462 3.65 0.00 35.00 3.71
44 45 6.149474 GGGGTAATCCATATGAAAGATGTTCG 59.851 42.308 3.65 0.00 37.22 3.95
45 46 7.004086 TGGGGTAATCCATATGAAAGATGTTC 58.996 38.462 3.65 0.00 37.22 3.18
46 47 6.921412 TGGGGTAATCCATATGAAAGATGTT 58.079 36.000 3.65 0.00 37.22 2.71
47 48 6.529084 TGGGGTAATCCATATGAAAGATGT 57.471 37.500 3.65 0.00 37.22 3.06
48 49 8.426569 AAATGGGGTAATCCATATGAAAGATG 57.573 34.615 3.65 0.00 46.05 2.90
49 50 9.759473 CTAAATGGGGTAATCCATATGAAAGAT 57.241 33.333 3.65 0.00 46.05 2.40
50 51 7.669722 GCTAAATGGGGTAATCCATATGAAAGA 59.330 37.037 3.65 0.00 46.05 2.52
51 52 7.451255 TGCTAAATGGGGTAATCCATATGAAAG 59.549 37.037 3.65 0.00 46.05 2.62
52 53 7.301420 TGCTAAATGGGGTAATCCATATGAAA 58.699 34.615 3.65 0.00 46.05 2.69
53 54 6.857848 TGCTAAATGGGGTAATCCATATGAA 58.142 36.000 3.65 0.00 46.05 2.57
54 55 6.274436 TCTGCTAAATGGGGTAATCCATATGA 59.726 38.462 3.65 0.00 46.05 2.15
55 56 6.484288 TCTGCTAAATGGGGTAATCCATATG 58.516 40.000 0.00 0.00 46.05 1.78
56 57 6.718593 TCTGCTAAATGGGGTAATCCATAT 57.281 37.500 0.00 0.00 46.05 1.78
57 58 6.523035 TTCTGCTAAATGGGGTAATCCATA 57.477 37.500 0.00 0.00 46.05 2.74
59 60 4.871871 TTCTGCTAAATGGGGTAATCCA 57.128 40.909 0.00 0.00 41.60 3.41
60 61 6.323739 TGATTTTCTGCTAAATGGGGTAATCC 59.676 38.462 0.00 0.00 0.00 3.01
61 62 7.346751 TGATTTTCTGCTAAATGGGGTAATC 57.653 36.000 0.00 0.00 0.00 1.75
62 63 7.732222 TTGATTTTCTGCTAAATGGGGTAAT 57.268 32.000 0.00 0.00 0.00 1.89
63 64 7.732222 ATTGATTTTCTGCTAAATGGGGTAA 57.268 32.000 0.00 0.00 0.00 2.85
64 65 8.830915 TTATTGATTTTCTGCTAAATGGGGTA 57.169 30.769 0.00 0.00 0.00 3.69
65 66 7.147672 CCTTATTGATTTTCTGCTAAATGGGGT 60.148 37.037 0.00 0.00 0.00 4.95
66 67 7.147672 ACCTTATTGATTTTCTGCTAAATGGGG 60.148 37.037 0.00 0.00 0.00 4.96
67 68 7.785033 ACCTTATTGATTTTCTGCTAAATGGG 58.215 34.615 0.00 0.00 0.00 4.00
68 69 8.469200 TGACCTTATTGATTTTCTGCTAAATGG 58.531 33.333 0.00 0.00 0.00 3.16
71 72 9.466497 AGATGACCTTATTGATTTTCTGCTAAA 57.534 29.630 0.00 0.00 0.00 1.85
72 73 9.466497 AAGATGACCTTATTGATTTTCTGCTAA 57.534 29.630 0.00 0.00 32.24 3.09
74 75 7.951347 AAGATGACCTTATTGATTTTCTGCT 57.049 32.000 0.00 0.00 32.24 4.24
75 76 9.727627 CTTAAGATGACCTTATTGATTTTCTGC 57.272 33.333 0.00 0.00 37.22 4.26
104 105 8.841300 CCGTACTGCATAGTATCATATATCAGT 58.159 37.037 0.00 0.00 41.22 3.41
105 106 7.805542 GCCGTACTGCATAGTATCATATATCAG 59.194 40.741 4.19 0.00 41.22 2.90
106 107 7.519970 CGCCGTACTGCATAGTATCATATATCA 60.520 40.741 10.03 0.00 41.22 2.15
107 108 6.797513 CGCCGTACTGCATAGTATCATATATC 59.202 42.308 10.03 0.00 41.22 1.63
108 109 6.485648 TCGCCGTACTGCATAGTATCATATAT 59.514 38.462 10.03 0.00 41.22 0.86
109 110 5.818857 TCGCCGTACTGCATAGTATCATATA 59.181 40.000 10.03 0.00 41.22 0.86
110 111 4.638865 TCGCCGTACTGCATAGTATCATAT 59.361 41.667 10.03 0.00 41.22 1.78
111 112 4.004982 TCGCCGTACTGCATAGTATCATA 58.995 43.478 10.03 0.00 41.22 2.15
112 113 2.817844 TCGCCGTACTGCATAGTATCAT 59.182 45.455 10.03 0.00 41.22 2.45
113 114 2.223745 TCGCCGTACTGCATAGTATCA 58.776 47.619 10.03 0.00 41.22 2.15
114 115 2.983402 TCGCCGTACTGCATAGTATC 57.017 50.000 10.03 0.00 41.22 2.24
115 116 4.008330 ACTATCGCCGTACTGCATAGTAT 58.992 43.478 21.26 7.47 41.22 2.12
116 117 3.405831 ACTATCGCCGTACTGCATAGTA 58.594 45.455 21.26 6.32 38.36 1.82
117 118 2.228059 ACTATCGCCGTACTGCATAGT 58.772 47.619 19.04 19.04 40.99 2.12
118 119 2.991434 ACTATCGCCGTACTGCATAG 57.009 50.000 18.21 18.21 32.96 2.23
119 120 4.004982 TGATACTATCGCCGTACTGCATA 58.995 43.478 10.03 5.86 0.00 3.14
120 121 2.817844 TGATACTATCGCCGTACTGCAT 59.182 45.455 10.03 5.06 0.00 3.96
121 122 2.223745 TGATACTATCGCCGTACTGCA 58.776 47.619 10.03 0.00 0.00 4.41
122 123 2.983402 TGATACTATCGCCGTACTGC 57.017 50.000 0.00 0.00 0.00 4.40
123 124 4.970611 GCATATGATACTATCGCCGTACTG 59.029 45.833 6.97 0.00 0.00 2.74
124 125 4.638865 TGCATATGATACTATCGCCGTACT 59.361 41.667 6.97 0.00 0.00 2.73
125 126 4.916870 TGCATATGATACTATCGCCGTAC 58.083 43.478 6.97 0.00 0.00 3.67
126 127 5.298276 TCATGCATATGATACTATCGCCGTA 59.702 40.000 6.97 0.00 38.37 4.02
127 128 4.097892 TCATGCATATGATACTATCGCCGT 59.902 41.667 6.97 0.00 38.37 5.68
128 129 4.610945 TCATGCATATGATACTATCGCCG 58.389 43.478 6.97 0.00 38.37 6.46
129 130 6.508563 CGTTTCATGCATATGATACTATCGCC 60.509 42.308 6.97 0.00 42.60 5.54
130 131 6.253512 TCGTTTCATGCATATGATACTATCGC 59.746 38.462 6.97 0.00 42.60 4.58
131 132 7.514280 GCTCGTTTCATGCATATGATACTATCG 60.514 40.741 6.97 3.67 42.60 2.92
132 133 7.490725 AGCTCGTTTCATGCATATGATACTATC 59.509 37.037 6.97 0.00 42.60 2.08
133 134 7.326454 AGCTCGTTTCATGCATATGATACTAT 58.674 34.615 6.97 0.00 42.60 2.12
134 135 6.691508 AGCTCGTTTCATGCATATGATACTA 58.308 36.000 6.97 0.00 42.60 1.82
135 136 5.545588 AGCTCGTTTCATGCATATGATACT 58.454 37.500 6.97 0.00 42.60 2.12
136 137 5.852738 AGCTCGTTTCATGCATATGATAC 57.147 39.130 6.97 0.00 42.60 2.24
137 138 7.818930 TCATAAGCTCGTTTCATGCATATGATA 59.181 33.333 6.97 0.00 42.60 2.15
138 139 6.652062 TCATAAGCTCGTTTCATGCATATGAT 59.348 34.615 6.97 0.00 42.60 2.45
139 140 5.990996 TCATAAGCTCGTTTCATGCATATGA 59.009 36.000 6.97 7.67 41.72 2.15
140 141 6.232139 TCATAAGCTCGTTTCATGCATATG 57.768 37.500 0.00 0.00 38.75 1.78
141 142 6.622245 GCATCATAAGCTCGTTTCATGCATAT 60.622 38.462 0.00 0.00 36.29 1.78
142 143 5.334337 GCATCATAAGCTCGTTTCATGCATA 60.334 40.000 0.00 0.00 36.29 3.14
143 144 4.556104 GCATCATAAGCTCGTTTCATGCAT 60.556 41.667 0.00 0.00 36.29 3.96
144 145 3.242837 GCATCATAAGCTCGTTTCATGCA 60.243 43.478 9.30 0.00 36.29 3.96
145 146 3.003068 AGCATCATAAGCTCGTTTCATGC 59.997 43.478 7.04 7.04 38.01 4.06
146 147 4.808077 AGCATCATAAGCTCGTTTCATG 57.192 40.909 0.00 0.00 38.01 3.07
147 148 4.752101 GGTAGCATCATAAGCTCGTTTCAT 59.248 41.667 0.00 0.00 42.32 2.57
148 149 4.119862 GGTAGCATCATAAGCTCGTTTCA 58.880 43.478 0.00 0.00 42.32 2.69
149 150 3.495001 GGGTAGCATCATAAGCTCGTTTC 59.505 47.826 0.00 0.00 42.32 2.78
150 151 3.118408 TGGGTAGCATCATAAGCTCGTTT 60.118 43.478 0.00 0.00 42.32 3.60
151 152 2.434336 TGGGTAGCATCATAAGCTCGTT 59.566 45.455 0.00 0.00 42.32 3.85
152 153 2.039418 TGGGTAGCATCATAAGCTCGT 58.961 47.619 0.00 0.00 42.32 4.18
153 154 2.036475 AGTGGGTAGCATCATAAGCTCG 59.964 50.000 0.00 0.00 42.32 5.03
154 155 3.760580 AGTGGGTAGCATCATAAGCTC 57.239 47.619 0.00 0.00 42.32 4.09
155 156 3.005897 CGTAGTGGGTAGCATCATAAGCT 59.994 47.826 0.00 0.00 45.77 3.74
156 157 3.005472 TCGTAGTGGGTAGCATCATAAGC 59.995 47.826 0.00 0.00 0.00 3.09
157 158 4.321304 CCTCGTAGTGGGTAGCATCATAAG 60.321 50.000 0.00 0.00 37.55 1.73
158 159 3.572682 CCTCGTAGTGGGTAGCATCATAA 59.427 47.826 0.00 0.00 37.55 1.90
159 160 3.154710 CCTCGTAGTGGGTAGCATCATA 58.845 50.000 0.00 0.00 37.55 2.15
160 161 1.964223 CCTCGTAGTGGGTAGCATCAT 59.036 52.381 0.00 0.00 37.55 2.45
161 162 1.399714 CCTCGTAGTGGGTAGCATCA 58.600 55.000 0.00 0.00 37.55 3.07
162 163 0.032267 GCCTCGTAGTGGGTAGCATC 59.968 60.000 0.00 0.00 42.22 3.91
163 164 0.686441 TGCCTCGTAGTGGGTAGCAT 60.686 55.000 0.00 0.00 42.22 3.79
164 165 0.901114 TTGCCTCGTAGTGGGTAGCA 60.901 55.000 0.00 0.00 42.22 3.49
165 166 0.459759 GTTGCCTCGTAGTGGGTAGC 60.460 60.000 0.00 0.00 42.22 3.58
166 167 0.175073 GGTTGCCTCGTAGTGGGTAG 59.825 60.000 0.00 0.00 42.22 3.18
167 168 0.251922 AGGTTGCCTCGTAGTGGGTA 60.252 55.000 0.00 0.00 42.22 3.69
168 169 1.125711 AAGGTTGCCTCGTAGTGGGT 61.126 55.000 0.00 0.00 42.22 4.51
169 170 0.899720 TAAGGTTGCCTCGTAGTGGG 59.100 55.000 0.00 0.00 42.22 4.61
170 171 1.822990 TCTAAGGTTGCCTCGTAGTGG 59.177 52.381 0.00 0.00 45.21 4.00
171 172 2.731341 CGTCTAAGGTTGCCTCGTAGTG 60.731 54.545 0.00 0.00 30.89 2.74
172 173 1.471684 CGTCTAAGGTTGCCTCGTAGT 59.528 52.381 0.00 0.00 30.89 2.73
173 174 1.202268 CCGTCTAAGGTTGCCTCGTAG 60.202 57.143 0.00 0.00 30.89 3.51
174 175 0.813184 CCGTCTAAGGTTGCCTCGTA 59.187 55.000 0.00 0.00 30.89 3.43
175 176 1.590147 CCGTCTAAGGTTGCCTCGT 59.410 57.895 0.00 0.00 30.89 4.18
176 177 1.810030 GCCGTCTAAGGTTGCCTCG 60.810 63.158 0.00 0.00 30.89 4.63
177 178 0.822164 TAGCCGTCTAAGGTTGCCTC 59.178 55.000 0.00 0.00 30.89 4.70
178 179 1.272807 TTAGCCGTCTAAGGTTGCCT 58.727 50.000 0.00 0.00 33.87 4.75
179 180 2.007608 CTTTAGCCGTCTAAGGTTGCC 58.992 52.381 0.00 0.00 36.27 4.52
180 181 2.696506 ACTTTAGCCGTCTAAGGTTGC 58.303 47.619 0.00 0.00 40.76 4.17
183 184 6.938596 ACAATTTAACTTTAGCCGTCTAAGGT 59.061 34.615 0.00 0.00 44.02 3.50
184 185 7.373778 ACAATTTAACTTTAGCCGTCTAAGG 57.626 36.000 0.00 0.00 37.73 2.69
185 186 8.500773 TGAACAATTTAACTTTAGCCGTCTAAG 58.499 33.333 0.00 0.00 36.27 2.18
186 187 8.380743 TGAACAATTTAACTTTAGCCGTCTAA 57.619 30.769 0.00 0.00 33.22 2.10
187 188 7.966246 TGAACAATTTAACTTTAGCCGTCTA 57.034 32.000 0.00 0.00 0.00 2.59
188 189 6.870971 TGAACAATTTAACTTTAGCCGTCT 57.129 33.333 0.00 0.00 0.00 4.18
189 190 8.515473 AATTGAACAATTTAACTTTAGCCGTC 57.485 30.769 6.91 0.00 37.74 4.79
190 191 8.880878 AAATTGAACAATTTAACTTTAGCCGT 57.119 26.923 19.52 0.00 45.93 5.68
207 208 7.637709 AACTGGAATTCGCTTAAAATTGAAC 57.362 32.000 0.00 0.00 0.00 3.18
209 210 8.655651 AAAAACTGGAATTCGCTTAAAATTGA 57.344 26.923 0.00 0.00 0.00 2.57
315 318 7.047891 TGATGGGTAAAGACAGCTTAATACTG 58.952 38.462 4.52 4.52 41.08 2.74
316 319 7.092846 ACTGATGGGTAAAGACAGCTTAATACT 60.093 37.037 0.00 0.00 32.98 2.12
317 320 7.048512 ACTGATGGGTAAAGACAGCTTAATAC 58.951 38.462 0.00 0.00 32.98 1.89
318 321 7.195374 ACTGATGGGTAAAGACAGCTTAATA 57.805 36.000 0.00 0.00 32.98 0.98
324 327 6.583562 AGTATAACTGATGGGTAAAGACAGC 58.416 40.000 0.00 0.00 32.67 4.40
351 354 9.277783 GGAGCATACATCTTTTACATCTTGTAT 57.722 33.333 0.00 0.00 32.20 2.29
352 355 8.264347 TGGAGCATACATCTTTTACATCTTGTA 58.736 33.333 0.00 0.00 0.00 2.41
353 356 7.112122 TGGAGCATACATCTTTTACATCTTGT 58.888 34.615 0.00 0.00 0.00 3.16
354 357 7.558161 TGGAGCATACATCTTTTACATCTTG 57.442 36.000 0.00 0.00 0.00 3.02
355 358 8.627403 CATTGGAGCATACATCTTTTACATCTT 58.373 33.333 0.00 0.00 0.00 2.40
359 362 6.422333 TCCATTGGAGCATACATCTTTTACA 58.578 36.000 0.00 0.00 0.00 2.41
360 363 6.942532 TCCATTGGAGCATACATCTTTTAC 57.057 37.500 0.00 0.00 0.00 2.01
412 419 4.468765 AGATCTCCTGTCTTCACACATG 57.531 45.455 0.00 0.00 0.00 3.21
414 421 4.527509 GAAGATCTCCTGTCTTCACACA 57.472 45.455 10.16 0.00 46.81 3.72
429 436 3.312973 CAGCAATGAGGAGCTTGAAGATC 59.687 47.826 1.05 1.05 39.50 2.75
518 535 3.539604 TGGACTAGAGCTACGGTACTTC 58.460 50.000 0.00 0.00 0.00 3.01
524 541 1.402259 CACACTGGACTAGAGCTACGG 59.598 57.143 0.00 0.00 0.00 4.02
803 839 2.975799 GTGGGAAAAGCGGCGTGA 60.976 61.111 9.37 0.00 0.00 4.35
815 851 4.257810 TCGGAAGTGGGGGTGGGA 62.258 66.667 0.00 0.00 0.00 4.37
824 860 4.341520 GGGTATATATAGGGCTCGGAAGTG 59.658 50.000 0.00 0.00 0.00 3.16
825 861 4.544683 GGGTATATATAGGGCTCGGAAGT 58.455 47.826 0.00 0.00 0.00 3.01
828 864 2.750807 GCGGGTATATATAGGGCTCGGA 60.751 54.545 3.99 0.00 0.00 4.55
830 866 1.612463 GGCGGGTATATATAGGGCTCG 59.388 57.143 0.00 0.00 0.00 5.03
831 867 1.969208 GGGCGGGTATATATAGGGCTC 59.031 57.143 0.00 0.00 0.00 4.70
832 868 1.756690 CGGGCGGGTATATATAGGGCT 60.757 57.143 0.00 0.00 0.00 5.19
833 869 0.677842 CGGGCGGGTATATATAGGGC 59.322 60.000 0.00 0.00 0.00 5.19
834 870 1.335145 CCGGGCGGGTATATATAGGG 58.665 60.000 2.35 0.00 0.00 3.53
835 871 0.677842 GCCGGGCGGGTATATATAGG 59.322 60.000 13.07 0.00 38.44 2.57
875 911 2.763448 TGGTTTGGAACTTTGGACTTGG 59.237 45.455 0.00 0.00 0.00 3.61
877 913 4.323180 GGTTTGGTTTGGAACTTTGGACTT 60.323 41.667 0.00 0.00 0.00 3.01
879 915 3.055747 TGGTTTGGTTTGGAACTTTGGAC 60.056 43.478 0.00 0.00 0.00 4.02
880 916 3.173965 TGGTTTGGTTTGGAACTTTGGA 58.826 40.909 0.00 0.00 0.00 3.53
881 917 3.618690 TGGTTTGGTTTGGAACTTTGG 57.381 42.857 0.00 0.00 0.00 3.28
882 918 3.369451 CGTTGGTTTGGTTTGGAACTTTG 59.631 43.478 0.00 0.00 0.00 2.77
883 919 3.258622 TCGTTGGTTTGGTTTGGAACTTT 59.741 39.130 0.00 0.00 0.00 2.66
884 920 2.826725 TCGTTGGTTTGGTTTGGAACTT 59.173 40.909 0.00 0.00 0.00 2.66
885 921 2.448453 TCGTTGGTTTGGTTTGGAACT 58.552 42.857 0.00 0.00 0.00 3.01
886 922 2.943449 TCGTTGGTTTGGTTTGGAAC 57.057 45.000 0.00 0.00 0.00 3.62
887 923 3.181474 GGATTCGTTGGTTTGGTTTGGAA 60.181 43.478 0.00 0.00 0.00 3.53
924 967 0.173481 GACTGCTGATCACGTAGGCA 59.827 55.000 6.43 6.43 0.00 4.75
925 968 0.173481 TGACTGCTGATCACGTAGGC 59.827 55.000 12.35 10.51 0.00 3.93
929 972 2.238942 TTGTTGACTGCTGATCACGT 57.761 45.000 0.00 0.00 0.00 4.49
1021 1080 2.520741 GGAGAGGGAGAGCTCGGG 60.521 72.222 8.37 0.00 31.95 5.14
1026 1085 1.152546 GGAGAGGGAGAGGGAGAGC 60.153 68.421 0.00 0.00 0.00 4.09
1130 1189 2.281345 GCCCCTCCATCATCTGCG 60.281 66.667 0.00 0.00 0.00 5.18
1434 1516 2.264794 CCGTCCCAGTAGTGGCAC 59.735 66.667 10.29 10.29 43.44 5.01
1497 1579 4.373116 TTCCTCAGCACGGCGGAC 62.373 66.667 13.24 1.83 0.00 4.79
1501 1583 2.383527 CGAAGTTCCTCAGCACGGC 61.384 63.158 0.00 0.00 0.00 5.68
1502 1584 1.009389 GTCGAAGTTCCTCAGCACGG 61.009 60.000 0.00 0.00 0.00 4.94
1503 1585 1.009389 GGTCGAAGTTCCTCAGCACG 61.009 60.000 0.00 0.00 0.00 5.34
1677 1777 8.620416 TGATACCTAATCGAATTCAACAAATGG 58.380 33.333 6.22 1.40 37.42 3.16
1725 1830 8.870160 TTCATTTCTTTGTGTCCTTGTAAATG 57.130 30.769 0.00 0.00 35.45 2.32
1731 1841 8.971321 CATACTTTTCATTTCTTTGTGTCCTTG 58.029 33.333 0.00 0.00 0.00 3.61
1793 1905 6.341316 AGTAATGTGAATGTCTGACGCTATT 58.659 36.000 2.98 0.00 0.00 1.73
1799 1911 4.563184 GGTCGAGTAATGTGAATGTCTGAC 59.437 45.833 0.00 0.00 0.00 3.51
1830 1942 5.171339 CCTACTAATTCAGGCTGCCATAT 57.829 43.478 22.65 7.89 0.00 1.78
1831 1943 4.623932 CCTACTAATTCAGGCTGCCATA 57.376 45.455 22.65 5.02 0.00 2.74
1832 1944 3.498774 CCTACTAATTCAGGCTGCCAT 57.501 47.619 22.65 2.34 0.00 4.40
1840 1952 6.090088 CGCTAGCTAATTGCCTACTAATTCAG 59.910 42.308 13.93 0.00 44.23 3.02
1849 1961 1.412710 ACTGCGCTAGCTAATTGCCTA 59.587 47.619 13.93 0.00 45.42 3.93
1850 1962 0.179000 ACTGCGCTAGCTAATTGCCT 59.821 50.000 13.93 0.00 45.42 4.75
1851 1963 0.583917 GACTGCGCTAGCTAATTGCC 59.416 55.000 13.93 0.00 45.42 4.52
1852 1964 1.260033 CAGACTGCGCTAGCTAATTGC 59.740 52.381 13.93 8.89 45.42 3.56
1853 1965 2.544685 ACAGACTGCGCTAGCTAATTG 58.455 47.619 13.93 6.25 45.42 2.32
1904 2042 3.097330 CGACGACGAAGAAGAGCATCTC 61.097 54.545 0.00 0.00 44.06 2.75
1908 2046 2.241171 TCGACGACGAAGAAGAGCA 58.759 52.632 7.68 0.00 45.74 4.26
1923 2061 2.439409 TCCAGTCCAAGTCGTAATCGA 58.561 47.619 0.00 0.00 44.12 3.59
1924 2062 2.933495 TCCAGTCCAAGTCGTAATCG 57.067 50.000 0.00 0.00 38.55 3.34
1925 2063 4.124851 ACATCCAGTCCAAGTCGTAATC 57.875 45.455 0.00 0.00 0.00 1.75
1926 2064 4.504858 GAACATCCAGTCCAAGTCGTAAT 58.495 43.478 0.00 0.00 0.00 1.89
1927 2065 3.306502 GGAACATCCAGTCCAAGTCGTAA 60.307 47.826 0.00 0.00 36.28 3.18
1928 2066 2.232941 GGAACATCCAGTCCAAGTCGTA 59.767 50.000 0.00 0.00 36.28 3.43
1929 2067 1.002087 GGAACATCCAGTCCAAGTCGT 59.998 52.381 0.00 0.00 36.28 4.34
1930 2068 1.676014 GGGAACATCCAGTCCAAGTCG 60.676 57.143 0.00 0.00 38.64 4.18
1931 2069 1.340114 GGGGAACATCCAGTCCAAGTC 60.340 57.143 0.00 0.00 38.64 3.01
1932 2070 0.698818 GGGGAACATCCAGTCCAAGT 59.301 55.000 0.00 0.00 38.64 3.16
1933 2071 0.995024 AGGGGAACATCCAGTCCAAG 59.005 55.000 0.00 0.00 38.64 3.61
1934 2072 0.991920 GAGGGGAACATCCAGTCCAA 59.008 55.000 0.00 0.00 38.64 3.53
1935 2073 0.119155 AGAGGGGAACATCCAGTCCA 59.881 55.000 0.00 0.00 43.69 4.02
1936 2074 1.763545 GTAGAGGGGAACATCCAGTCC 59.236 57.143 0.00 0.00 43.69 3.85
1937 2075 2.432510 CAGTAGAGGGGAACATCCAGTC 59.567 54.545 0.00 0.00 43.69 3.51
1938 2076 2.044492 TCAGTAGAGGGGAACATCCAGT 59.956 50.000 0.00 0.00 43.69 4.00
1939 2077 2.752030 TCAGTAGAGGGGAACATCCAG 58.248 52.381 0.00 0.00 43.69 3.86
1940 2078 2.940514 TCAGTAGAGGGGAACATCCA 57.059 50.000 0.00 0.00 43.69 3.41
1941 2079 5.888982 TTTATCAGTAGAGGGGAACATCC 57.111 43.478 0.00 0.00 43.69 3.51
1942 2080 7.067496 TGATTTATCAGTAGAGGGGAACATC 57.933 40.000 0.00 0.00 35.27 3.06
1943 2081 7.451731 TTGATTTATCAGTAGAGGGGAACAT 57.548 36.000 0.00 0.00 38.19 2.71
1944 2082 6.884472 TTGATTTATCAGTAGAGGGGAACA 57.116 37.500 0.00 0.00 38.19 3.18
1945 2083 7.740805 AGATTGATTTATCAGTAGAGGGGAAC 58.259 38.462 0.00 0.00 38.19 3.62
1946 2084 7.016661 GGAGATTGATTTATCAGTAGAGGGGAA 59.983 40.741 0.00 0.00 38.19 3.97
1947 2085 6.498651 GGAGATTGATTTATCAGTAGAGGGGA 59.501 42.308 0.00 0.00 38.19 4.81
1948 2086 6.296145 GGGAGATTGATTTATCAGTAGAGGGG 60.296 46.154 0.00 0.00 38.19 4.79
1949 2087 6.573289 CGGGAGATTGATTTATCAGTAGAGGG 60.573 46.154 0.00 0.00 38.19 4.30
1950 2088 6.393990 CGGGAGATTGATTTATCAGTAGAGG 58.606 44.000 0.00 0.00 38.19 3.69
1951 2089 5.866633 GCGGGAGATTGATTTATCAGTAGAG 59.133 44.000 0.00 0.00 38.19 2.43
1952 2090 5.279506 GGCGGGAGATTGATTTATCAGTAGA 60.280 44.000 0.00 0.00 38.19 2.59
1953 2091 4.932200 GGCGGGAGATTGATTTATCAGTAG 59.068 45.833 0.00 0.00 38.19 2.57
1954 2092 4.346709 TGGCGGGAGATTGATTTATCAGTA 59.653 41.667 0.00 0.00 38.19 2.74
1955 2093 3.136443 TGGCGGGAGATTGATTTATCAGT 59.864 43.478 0.00 0.00 38.19 3.41
1956 2094 3.499918 GTGGCGGGAGATTGATTTATCAG 59.500 47.826 0.00 0.00 38.19 2.90
1957 2095 3.476552 GTGGCGGGAGATTGATTTATCA 58.523 45.455 0.00 0.00 34.44 2.15
1958 2096 2.814336 GGTGGCGGGAGATTGATTTATC 59.186 50.000 0.00 0.00 0.00 1.75
1959 2097 2.174639 TGGTGGCGGGAGATTGATTTAT 59.825 45.455 0.00 0.00 0.00 1.40
1960 2098 1.562008 TGGTGGCGGGAGATTGATTTA 59.438 47.619 0.00 0.00 0.00 1.40
1961 2099 0.331278 TGGTGGCGGGAGATTGATTT 59.669 50.000 0.00 0.00 0.00 2.17
1962 2100 0.107017 CTGGTGGCGGGAGATTGATT 60.107 55.000 0.00 0.00 0.00 2.57
1963 2101 0.982852 TCTGGTGGCGGGAGATTGAT 60.983 55.000 0.00 0.00 0.00 2.57
1964 2102 1.612146 TCTGGTGGCGGGAGATTGA 60.612 57.895 0.00 0.00 0.00 2.57
1965 2103 1.450312 GTCTGGTGGCGGGAGATTG 60.450 63.158 0.00 0.00 0.00 2.67
1966 2104 2.670148 GGTCTGGTGGCGGGAGATT 61.670 63.158 0.00 0.00 0.00 2.40
1967 2105 3.083997 GGTCTGGTGGCGGGAGAT 61.084 66.667 0.00 0.00 0.00 2.75
1968 2106 4.631740 TGGTCTGGTGGCGGGAGA 62.632 66.667 0.00 0.00 0.00 3.71
1969 2107 4.087892 CTGGTCTGGTGGCGGGAG 62.088 72.222 0.00 0.00 0.00 4.30
1974 2112 4.314440 TGACGCTGGTCTGGTGGC 62.314 66.667 0.00 0.00 43.79 5.01
1975 2113 2.357517 GTGACGCTGGTCTGGTGG 60.358 66.667 0.00 0.00 43.79 4.61
1976 2114 0.946221 GAAGTGACGCTGGTCTGGTG 60.946 60.000 0.00 0.00 43.79 4.17
1977 2115 1.367840 GAAGTGACGCTGGTCTGGT 59.632 57.895 0.00 0.00 43.79 4.00
1978 2116 0.668706 CTGAAGTGACGCTGGTCTGG 60.669 60.000 0.00 0.00 43.79 3.86
1979 2117 0.315251 TCTGAAGTGACGCTGGTCTG 59.685 55.000 0.00 0.00 43.79 3.51
1980 2118 1.040646 TTCTGAAGTGACGCTGGTCT 58.959 50.000 0.00 0.00 43.79 3.85
1981 2119 1.996191 GATTCTGAAGTGACGCTGGTC 59.004 52.381 0.00 0.00 43.71 4.02
1982 2120 1.338200 GGATTCTGAAGTGACGCTGGT 60.338 52.381 0.00 0.00 0.00 4.00
1983 2121 1.338105 TGGATTCTGAAGTGACGCTGG 60.338 52.381 0.00 0.00 0.00 4.85
1984 2122 2.084610 TGGATTCTGAAGTGACGCTG 57.915 50.000 0.00 0.00 0.00 5.18
1985 2123 2.839486 TTGGATTCTGAAGTGACGCT 57.161 45.000 0.00 0.00 0.00 5.07
1986 2124 3.265791 AGATTGGATTCTGAAGTGACGC 58.734 45.455 0.00 0.00 0.00 5.19
1987 2125 4.331168 GGAAGATTGGATTCTGAAGTGACG 59.669 45.833 0.00 0.00 0.00 4.35
1988 2126 4.331168 CGGAAGATTGGATTCTGAAGTGAC 59.669 45.833 0.00 0.00 35.45 3.67
1989 2127 4.222810 TCGGAAGATTGGATTCTGAAGTGA 59.777 41.667 0.00 0.00 38.73 3.41
1990 2128 4.507710 TCGGAAGATTGGATTCTGAAGTG 58.492 43.478 0.00 0.00 38.73 3.16
1991 2129 4.826274 TCGGAAGATTGGATTCTGAAGT 57.174 40.909 0.00 0.00 38.73 3.01
1994 2132 5.126067 GGAATTCGGAAGATTGGATTCTGA 58.874 41.667 0.00 0.00 39.67 3.27
1995 2133 4.024556 CGGAATTCGGAAGATTGGATTCTG 60.025 45.833 7.20 0.00 41.60 3.02
1996 2134 4.130118 CGGAATTCGGAAGATTGGATTCT 58.870 43.478 7.20 0.00 41.60 2.40
1997 2135 4.127171 TCGGAATTCGGAAGATTGGATTC 58.873 43.478 12.85 0.00 41.60 2.52
1998 2136 4.150897 TCGGAATTCGGAAGATTGGATT 57.849 40.909 12.85 0.00 41.60 3.01
1999 2137 3.838244 TCGGAATTCGGAAGATTGGAT 57.162 42.857 12.85 0.00 41.60 3.41
2000 2138 3.838244 ATCGGAATTCGGAAGATTGGA 57.162 42.857 18.30 0.00 41.60 3.53
2001 2139 4.452455 CCTAATCGGAATTCGGAAGATTGG 59.548 45.833 18.30 16.13 39.77 3.16
2002 2140 4.083802 GCCTAATCGGAATTCGGAAGATTG 60.084 45.833 18.30 9.47 39.77 2.67
2003 2141 4.065789 GCCTAATCGGAATTCGGAAGATT 58.934 43.478 18.30 16.89 39.77 2.40
2004 2142 3.325135 AGCCTAATCGGAATTCGGAAGAT 59.675 43.478 18.30 10.89 39.77 2.40
2005 2143 2.698797 AGCCTAATCGGAATTCGGAAGA 59.301 45.455 18.30 9.26 39.77 2.87
2006 2144 2.802816 CAGCCTAATCGGAATTCGGAAG 59.197 50.000 18.30 12.34 39.77 3.46
2007 2145 2.432874 TCAGCCTAATCGGAATTCGGAA 59.567 45.455 18.30 3.87 39.77 4.30
2008 2146 2.036387 TCAGCCTAATCGGAATTCGGA 58.964 47.619 16.94 16.94 39.77 4.55
2009 2147 2.526304 TCAGCCTAATCGGAATTCGG 57.474 50.000 6.67 6.67 39.77 4.30
2010 2148 3.653344 TGATCAGCCTAATCGGAATTCG 58.347 45.455 0.00 0.00 40.90 3.34
2011 2149 3.999663 CCTGATCAGCCTAATCGGAATTC 59.000 47.826 17.76 0.00 32.25 2.17
2012 2150 3.648067 TCCTGATCAGCCTAATCGGAATT 59.352 43.478 17.76 0.00 32.25 2.17
2013 2151 3.242867 TCCTGATCAGCCTAATCGGAAT 58.757 45.455 17.76 0.00 32.25 3.01
2014 2152 2.677914 TCCTGATCAGCCTAATCGGAA 58.322 47.619 17.76 0.00 32.25 4.30
2015 2153 2.381752 TCCTGATCAGCCTAATCGGA 57.618 50.000 17.76 4.55 32.25 4.55
2016 2154 2.564504 TGATCCTGATCAGCCTAATCGG 59.435 50.000 17.76 1.95 42.42 4.18
2017 2155 3.949842 TGATCCTGATCAGCCTAATCG 57.050 47.619 17.76 1.85 42.42 3.34
2026 2164 0.683412 CCCATCGCTGATCCTGATCA 59.317 55.000 9.35 9.35 44.83 2.92
2027 2165 0.673022 GCCCATCGCTGATCCTGATC 60.673 60.000 0.06 0.06 38.29 2.92
2028 2166 1.374190 GCCCATCGCTGATCCTGAT 59.626 57.895 0.00 0.00 0.00 2.90
2029 2167 2.824546 GCCCATCGCTGATCCTGA 59.175 61.111 0.00 0.00 0.00 3.86
2030 2168 2.664185 CGCCCATCGCTGATCCTG 60.664 66.667 0.00 0.00 34.21 3.86
2031 2169 3.933722 CCGCCCATCGCTGATCCT 61.934 66.667 0.00 0.00 36.73 3.24
2033 2171 4.916293 TGCCGCCCATCGCTGATC 62.916 66.667 0.00 0.00 36.73 2.92
2034 2172 4.923942 CTGCCGCCCATCGCTGAT 62.924 66.667 0.00 0.00 36.73 2.90
2100 2238 3.649277 ATCGCAGTCGCAGTCCCAC 62.649 63.158 0.00 0.00 38.40 4.61
2141 2279 1.032114 ATAAAGGTGCTGCTTCCGCC 61.032 55.000 0.00 0.00 34.43 6.13
2165 2304 2.278206 CCGTCGAGTCATCCAGCG 60.278 66.667 0.00 0.00 0.00 5.18
2182 2321 0.179084 TTGTAGATGCTGTAGCCGCC 60.179 55.000 0.80 0.00 41.18 6.13
2192 2331 3.885777 GCGTCAAGCTTGTAGATGC 57.114 52.632 25.19 18.66 44.04 3.91
2214 2353 0.026933 CTGAGTCGTCCGAGATGTCG 59.973 60.000 5.06 5.06 46.39 4.35
2272 2411 4.361253 CGGCGAATTCATCCGGAT 57.639 55.556 21.79 12.38 39.52 4.18
2338 2477 1.970352 TAATAACGTGGGTCGGGGGC 61.970 60.000 0.00 0.00 44.69 5.80
2340 2479 0.179076 GGTAATAACGTGGGTCGGGG 60.179 60.000 0.00 0.00 44.69 5.73
2343 2482 2.533266 GAGTGGTAATAACGTGGGTCG 58.467 52.381 0.00 0.00 46.00 4.79
2346 2485 1.472026 CCGGAGTGGTAATAACGTGGG 60.472 57.143 0.00 0.00 0.00 4.61
2350 2489 0.101040 TCGCCGGAGTGGTAATAACG 59.899 55.000 5.05 0.00 41.21 3.18
2374 2513 1.623542 ATGGTTGGGGGAGCGTAGTC 61.624 60.000 0.00 0.00 0.00 2.59
2376 2515 1.146263 GATGGTTGGGGGAGCGTAG 59.854 63.158 0.00 0.00 0.00 3.51
2379 2518 4.096003 ACGATGGTTGGGGGAGCG 62.096 66.667 0.00 0.00 0.00 5.03
2442 2581 2.936032 AAGGCAGGGACCCCAGAC 60.936 66.667 7.00 1.86 38.92 3.51
2444 2583 4.052518 CCAAGGCAGGGACCCCAG 62.053 72.222 7.00 0.78 38.92 4.45
2479 2618 1.940613 CAAGGCGTATAGCTTTCCACC 59.059 52.381 0.00 0.00 43.73 4.61
2499 2638 1.818642 AGCTGAGCACCTGATTTGTC 58.181 50.000 7.39 0.00 0.00 3.18
2552 2691 4.220382 CCCTCTCTTGATCGCTCAATCTAT 59.780 45.833 1.59 0.00 40.52 1.98
2558 2697 2.079170 ATCCCTCTCTTGATCGCTCA 57.921 50.000 0.00 0.00 0.00 4.26
2561 2700 1.414181 TCCAATCCCTCTCTTGATCGC 59.586 52.381 0.00 0.00 0.00 4.58
2609 2748 3.129502 CATCCAGCCCACTGCACG 61.130 66.667 0.00 0.00 43.02 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.