Multiple sequence alignment - TraesCS7D01G161500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G161500 chr7D 100.000 5713 0 0 1 5713 111620987 111615275 0.000000e+00 10551.0
1 TraesCS7D01G161500 chr7D 96.552 58 2 0 5494 5551 111615429 111615372 4.710000e-16 97.1
2 TraesCS7D01G161500 chr7D 96.552 58 2 0 5559 5616 111615494 111615437 4.710000e-16 97.1
3 TraesCS7D01G161500 chr7A 90.819 4727 243 96 666 5329 116654516 116649918 0.000000e+00 6148.0
4 TraesCS7D01G161500 chr7A 88.820 161 6 4 5561 5713 49911417 49911261 2.720000e-43 187.0
5 TraesCS7D01G161500 chr7A 88.119 101 7 2 5559 5659 216853327 216853422 1.300000e-21 115.0
6 TraesCS7D01G161500 chr7A 88.235 85 9 1 583 666 116654886 116654802 3.640000e-17 100.0
7 TraesCS7D01G161500 chr7B 92.105 2812 139 51 594 3356 71175946 71173169 0.000000e+00 3886.0
8 TraesCS7D01G161500 chr7B 95.425 1530 53 8 3894 5415 71171457 71169937 0.000000e+00 2422.0
9 TraesCS7D01G161500 chr7B 98.024 506 10 0 3400 3905 71173169 71172664 0.000000e+00 880.0
10 TraesCS7D01G161500 chr2B 86.885 610 53 4 1 584 550730875 550731483 0.000000e+00 658.0
11 TraesCS7D01G161500 chr2B 85.686 510 45 5 1 485 641083052 641082546 3.950000e-141 512.0
12 TraesCS7D01G161500 chr2B 82.245 383 56 10 1055 1431 475305674 475305298 2.570000e-83 320.0
13 TraesCS7D01G161500 chr2B 81.111 180 32 2 3480 3658 475303521 475303343 5.970000e-30 143.0
14 TraesCS7D01G161500 chr2B 88.889 63 6 1 1277 1339 774492180 774492241 6.140000e-10 76.8
15 TraesCS7D01G161500 chr6D 86.000 600 47 17 1 588 32302152 32301578 4.890000e-170 608.0
16 TraesCS7D01G161500 chr6D 83.305 581 61 14 1 546 426482318 426482897 2.380000e-138 503.0
17 TraesCS7D01G161500 chr6D 96.970 33 0 1 5419 5450 470351205 470351237 3.000000e-03 54.7
18 TraesCS7D01G161500 chr5D 84.738 629 54 10 1 589 490770452 490769826 4.930000e-165 592.0
19 TraesCS7D01G161500 chr5D 84.174 575 69 14 1 553 334971317 334971891 6.510000e-149 538.0
20 TraesCS7D01G161500 chr4A 84.211 608 60 11 7 582 7446041 7445438 5.000000e-155 558.0
21 TraesCS7D01G161500 chr4A 84.733 524 40 12 1 485 595420283 595419761 6.650000e-134 488.0
22 TraesCS7D01G161500 chr5B 86.667 510 42 4 1 485 544499019 544498511 5.040000e-150 542.0
23 TraesCS7D01G161500 chr3A 85.000 560 39 14 7 544 741359985 741359449 1.410000e-145 527.0
24 TraesCS7D01G161500 chr5A 86.024 508 44 7 1 482 452435805 452436311 2.360000e-143 520.0
25 TraesCS7D01G161500 chr3B 85.714 511 46 5 1 485 83307743 83307234 1.100000e-141 514.0
26 TraesCS7D01G161500 chr3B 85.882 425 37 5 1 403 239887168 239887591 1.140000e-116 431.0
27 TraesCS7D01G161500 chr3B 88.889 252 24 4 238 485 797465580 797465329 2.000000e-79 307.0
28 TraesCS7D01G161500 chr1B 85.323 511 48 9 1 485 380474305 380473796 2.380000e-138 503.0
29 TraesCS7D01G161500 chrUn 82.315 622 59 26 1 578 294621815 294622429 5.140000e-135 492.0
30 TraesCS7D01G161500 chrUn 94.839 155 8 0 5559 5713 463206652 463206498 5.720000e-60 243.0
31 TraesCS7D01G161500 chrUn 87.730 163 8 3 5559 5713 311595160 311595318 4.550000e-41 180.0
32 TraesCS7D01G161500 chr6B 82.682 537 40 16 1 485 640574546 640574011 1.470000e-115 427.0
33 TraesCS7D01G161500 chr2A 83.708 356 48 6 1078 1431 537967486 537967139 1.530000e-85 327.0
34 TraesCS7D01G161500 chr2A 81.667 180 31 2 3480 3658 537965361 537965183 1.280000e-31 148.0
35 TraesCS7D01G161500 chr2A 84.722 72 10 1 1265 1336 760375068 760375138 2.860000e-08 71.3
36 TraesCS7D01G161500 chr2D 83.616 354 50 7 1083 1431 401290432 401290082 5.520000e-85 326.0
37 TraesCS7D01G161500 chr2D 82.222 180 30 2 3480 3658 401288064 401287886 2.760000e-33 154.0
38 TraesCS7D01G161500 chr3D 82.682 179 9 5 5545 5713 604412822 604412988 7.720000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G161500 chr7D 111615275 111620987 5712 True 10551.0 10551 100.000000 1 5713 1 chr7D.!!$R1 5712
1 TraesCS7D01G161500 chr7A 116649918 116654886 4968 True 3124.0 6148 89.527000 583 5329 2 chr7A.!!$R2 4746
2 TraesCS7D01G161500 chr7B 71169937 71175946 6009 True 2396.0 3886 95.184667 594 5415 3 chr7B.!!$R1 4821
3 TraesCS7D01G161500 chr2B 550730875 550731483 608 False 658.0 658 86.885000 1 584 1 chr2B.!!$F1 583
4 TraesCS7D01G161500 chr2B 641082546 641083052 506 True 512.0 512 85.686000 1 485 1 chr2B.!!$R1 484
5 TraesCS7D01G161500 chr2B 475303343 475305674 2331 True 231.5 320 81.678000 1055 3658 2 chr2B.!!$R2 2603
6 TraesCS7D01G161500 chr6D 32301578 32302152 574 True 608.0 608 86.000000 1 588 1 chr6D.!!$R1 587
7 TraesCS7D01G161500 chr6D 426482318 426482897 579 False 503.0 503 83.305000 1 546 1 chr6D.!!$F1 545
8 TraesCS7D01G161500 chr5D 490769826 490770452 626 True 592.0 592 84.738000 1 589 1 chr5D.!!$R1 588
9 TraesCS7D01G161500 chr5D 334971317 334971891 574 False 538.0 538 84.174000 1 553 1 chr5D.!!$F1 552
10 TraesCS7D01G161500 chr4A 7445438 7446041 603 True 558.0 558 84.211000 7 582 1 chr4A.!!$R1 575
11 TraesCS7D01G161500 chr4A 595419761 595420283 522 True 488.0 488 84.733000 1 485 1 chr4A.!!$R2 484
12 TraesCS7D01G161500 chr5B 544498511 544499019 508 True 542.0 542 86.667000 1 485 1 chr5B.!!$R1 484
13 TraesCS7D01G161500 chr3A 741359449 741359985 536 True 527.0 527 85.000000 7 544 1 chr3A.!!$R1 537
14 TraesCS7D01G161500 chr5A 452435805 452436311 506 False 520.0 520 86.024000 1 482 1 chr5A.!!$F1 481
15 TraesCS7D01G161500 chr3B 83307234 83307743 509 True 514.0 514 85.714000 1 485 1 chr3B.!!$R1 484
16 TraesCS7D01G161500 chr1B 380473796 380474305 509 True 503.0 503 85.323000 1 485 1 chr1B.!!$R1 484
17 TraesCS7D01G161500 chrUn 294621815 294622429 614 False 492.0 492 82.315000 1 578 1 chrUn.!!$F1 577
18 TraesCS7D01G161500 chr6B 640574011 640574546 535 True 427.0 427 82.682000 1 485 1 chr6B.!!$R1 484
19 TraesCS7D01G161500 chr2A 537965183 537967486 2303 True 237.5 327 82.687500 1078 3658 2 chr2A.!!$R1 2580
20 TraesCS7D01G161500 chr2D 401287886 401290432 2546 True 240.0 326 82.919000 1083 3658 2 chr2D.!!$R1 2575

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
938 1545 0.319728 CCACACCAGTCCAGAGACAG 59.680 60.000 0.00 0.00 46.15 3.51 F
1437 2086 0.032217 CCATGGCCAAGGTACCCAAT 60.032 55.000 19.25 0.00 31.43 3.16 F
1440 2089 0.039035 TGGCCAAGGTACCCAATCAC 59.961 55.000 0.61 0.00 0.00 3.06 F
1441 2090 0.039035 GGCCAAGGTACCCAATCACA 59.961 55.000 8.74 0.00 0.00 3.58 F
1489 2138 0.104671 AAACAAATGCTGCGCCTGTT 59.895 45.000 4.18 2.10 0.00 3.16 F
1703 2360 0.594110 GCGAGGATAGTAGAGCGCTT 59.406 55.000 13.26 4.13 41.09 4.68 F
1795 2452 2.950309 CCATCTGATCTTGGCAAAGAGG 59.050 50.000 9.90 2.81 45.50 3.69 F
2236 3888 3.265737 ACAGTAGATTATGGGCCAACACA 59.734 43.478 11.89 0.00 0.00 3.72 F
3674 5448 3.482436 AGGTAACCGAAACATTTCAGCA 58.518 40.909 5.28 0.00 37.01 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2107 3757 0.917259 GAACGCAGTGACATCGCTAG 59.083 55.000 0.00 0.00 45.00 3.42 R
2702 4360 0.971959 TGAAGCCAATGTCCATGCCC 60.972 55.000 0.00 0.00 0.00 5.36 R
3280 4953 1.760613 TCGACTAGCTAAACCCATGGG 59.239 52.381 30.23 30.23 42.03 4.00 R
3296 4969 7.647907 TTGAAGTATTTAAGGTTGACTCGAC 57.352 36.000 0.00 0.00 0.00 4.20 R
3341 5015 7.986320 AGATGACCAACAAAATCAAAACATCAA 59.014 29.630 0.00 0.00 34.73 2.57 R
3672 5446 7.707893 ACAATTGCAGAAATAATGTCCTAATGC 59.292 33.333 5.05 0.00 0.00 3.56 R
3756 5530 4.521146 AGGATCACTCATAACTGCCAAAG 58.479 43.478 0.00 0.00 0.00 2.77 R
3852 5626 6.498304 CCAGCCATGATGACTTTAATGTTAC 58.502 40.000 0.00 0.00 0.00 2.50 R
5506 8507 0.106894 ATGAAGCGCTAACCCTAGCC 59.893 55.000 12.05 0.00 46.80 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 3.508744 AAAAATGCTACATCCGGCAAG 57.491 42.857 0.00 0.00 41.90 4.01
53 54 2.229784 GGCAAGCATGAAAGCTACAACT 59.770 45.455 0.00 0.00 45.89 3.16
132 134 4.597920 GGCAAAAAGCTGCAATAGGCGA 62.598 50.000 1.02 0.00 44.52 5.54
221 224 2.515523 GCGATGGAGCTGCATGGT 60.516 61.111 26.69 1.58 0.00 3.55
297 364 0.985490 GCAACCAGAGGGAGGGAGAT 60.985 60.000 0.00 0.00 38.05 2.75
376 652 3.515286 CCCTGGCAAGCTGCGATG 61.515 66.667 0.00 4.43 46.21 3.84
377 653 3.515286 CCTGGCAAGCTGCGATGG 61.515 66.667 9.85 0.00 46.21 3.51
378 654 4.189188 CTGGCAAGCTGCGATGGC 62.189 66.667 21.81 21.81 46.21 4.40
381 657 3.803082 GCAAGCTGCGATGGCGAA 61.803 61.111 9.85 0.00 44.10 4.70
482 785 4.069232 TGCGTGCGGGAGGAAGAG 62.069 66.667 0.00 0.00 0.00 2.85
589 893 1.736126 CGACGCAGAGTACTGTCCTAA 59.264 52.381 0.00 0.00 45.04 2.69
633 938 0.694771 TGCCAGAGACTGCCATTTCT 59.305 50.000 0.00 0.00 0.00 2.52
659 964 3.714391 ACGGACGTTGGATTAATCTAGC 58.286 45.455 14.95 10.18 0.00 3.42
735 1327 3.559655 GCATTTCCTTGGACCAACAAAAC 59.440 43.478 1.69 0.00 0.00 2.43
938 1545 0.319728 CCACACCAGTCCAGAGACAG 59.680 60.000 0.00 0.00 46.15 3.51
939 1546 1.332195 CACACCAGTCCAGAGACAGA 58.668 55.000 0.00 0.00 46.15 3.41
1434 2083 2.442087 GCCATGGCCAAGGTACCC 60.442 66.667 27.24 7.72 34.56 3.69
1436 2085 1.386155 CCATGGCCAAGGTACCCAA 59.614 57.895 19.25 0.00 31.43 4.12
1437 2086 0.032217 CCATGGCCAAGGTACCCAAT 60.032 55.000 19.25 0.00 31.43 3.16
1438 2087 1.402787 CATGGCCAAGGTACCCAATC 58.597 55.000 10.96 0.00 31.43 2.67
1439 2088 1.006813 ATGGCCAAGGTACCCAATCA 58.993 50.000 10.96 1.56 31.43 2.57
1440 2089 0.039035 TGGCCAAGGTACCCAATCAC 59.961 55.000 0.61 0.00 0.00 3.06
1441 2090 0.039035 GGCCAAGGTACCCAATCACA 59.961 55.000 8.74 0.00 0.00 3.58
1443 2092 1.750778 GCCAAGGTACCCAATCACATG 59.249 52.381 8.74 0.00 0.00 3.21
1444 2093 1.750778 CCAAGGTACCCAATCACATGC 59.249 52.381 8.74 0.00 0.00 4.06
1445 2094 2.621407 CCAAGGTACCCAATCACATGCT 60.621 50.000 8.74 0.00 0.00 3.79
1446 2095 3.091545 CAAGGTACCCAATCACATGCTT 58.908 45.455 8.74 0.00 0.00 3.91
1447 2096 3.456380 AGGTACCCAATCACATGCTTT 57.544 42.857 8.74 0.00 0.00 3.51
1448 2097 4.584638 AGGTACCCAATCACATGCTTTA 57.415 40.909 8.74 0.00 0.00 1.85
1449 2098 5.129368 AGGTACCCAATCACATGCTTTAT 57.871 39.130 8.74 0.00 0.00 1.40
1450 2099 4.889409 AGGTACCCAATCACATGCTTTATG 59.111 41.667 8.74 0.00 42.68 1.90
1451 2100 3.806625 ACCCAATCACATGCTTTATGC 57.193 42.857 0.00 0.00 40.59 3.14
1452 2101 3.368248 ACCCAATCACATGCTTTATGCT 58.632 40.909 0.00 0.00 40.59 3.79
1453 2102 3.770933 ACCCAATCACATGCTTTATGCTT 59.229 39.130 0.00 0.00 40.59 3.91
1459 2108 1.117150 CATGCTTTATGCTTGCCCCT 58.883 50.000 0.00 0.00 43.37 4.79
1462 2111 1.818555 CTTTATGCTTGCCCCTGCC 59.181 57.895 0.00 0.00 36.33 4.85
1489 2138 0.104671 AAACAAATGCTGCGCCTGTT 59.895 45.000 4.18 2.10 0.00 3.16
1545 2195 5.391312 ACTCCAGTGATTTGCATTTTACC 57.609 39.130 0.00 0.00 0.00 2.85
1546 2196 4.832266 ACTCCAGTGATTTGCATTTTACCA 59.168 37.500 0.00 0.00 0.00 3.25
1568 2218 6.724905 ACCAGTACCAACTTTCTAGTCAGTAT 59.275 38.462 0.00 0.00 31.97 2.12
1610 2260 2.263540 GAAAGCGCCCGTCTGGTA 59.736 61.111 2.29 0.00 36.04 3.25
1612 2262 2.502692 GAAAGCGCCCGTCTGGTAGT 62.503 60.000 2.29 0.00 36.04 2.73
1616 2267 0.670162 GCGCCCGTCTGGTAGTATTA 59.330 55.000 0.00 0.00 36.04 0.98
1626 2277 7.758528 CCCGTCTGGTAGTATTAATAATACAGC 59.241 40.741 25.98 16.53 44.87 4.40
1660 2311 1.303282 GATGGCCGTTTTCTCCCCT 59.697 57.895 0.00 0.00 0.00 4.79
1665 2316 1.617322 GCCGTTTTCTCCCCTTTTCT 58.383 50.000 0.00 0.00 0.00 2.52
1667 2318 2.288213 GCCGTTTTCTCCCCTTTTCTTG 60.288 50.000 0.00 0.00 0.00 3.02
1689 2346 1.885233 TCTGAGATGCTATCTGCGAGG 59.115 52.381 3.76 0.00 46.63 4.63
1703 2360 0.594110 GCGAGGATAGTAGAGCGCTT 59.406 55.000 13.26 4.13 41.09 4.68
1795 2452 2.950309 CCATCTGATCTTGGCAAAGAGG 59.050 50.000 9.90 2.81 45.50 3.69
1890 3075 5.753438 TGTGATTCGTAGGCATAGTTGAATC 59.247 40.000 15.57 15.57 41.12 2.52
2094 3744 6.574350 ACATCTAACATCAGCAGTAAGTACC 58.426 40.000 0.00 0.00 0.00 3.34
2107 3757 5.539048 CAGTAAGTACCCATGCCAGTATAC 58.461 45.833 0.00 0.00 0.00 1.47
2219 3869 3.446161 GTGTGGGTAGTAGCATCACAGTA 59.554 47.826 10.51 0.00 38.74 2.74
2220 3870 3.699538 TGTGGGTAGTAGCATCACAGTAG 59.300 47.826 7.18 0.00 34.01 2.57
2227 3877 7.316640 GGTAGTAGCATCACAGTAGATTATGG 58.683 42.308 0.00 0.00 0.00 2.74
2236 3888 3.265737 ACAGTAGATTATGGGCCAACACA 59.734 43.478 11.89 0.00 0.00 3.72
2237 3889 3.627577 CAGTAGATTATGGGCCAACACAC 59.372 47.826 11.89 4.21 0.00 3.82
2280 3932 4.423625 ACTCTGCTTTACTCAGTTGGTT 57.576 40.909 0.00 0.00 33.48 3.67
2343 3995 7.514784 AGATCTGTTTTGTCATTTGATGTCA 57.485 32.000 0.00 0.00 0.00 3.58
2399 4051 9.710818 ACTAGGACTAAGTCAAGATACCATTTA 57.289 33.333 0.00 0.00 33.68 1.40
2490 4146 5.466393 GCTGCTACATTTGTTTTCACCATTT 59.534 36.000 0.00 0.00 0.00 2.32
3007 4666 5.297029 GCCTTATGAACTTATTCTGGTCCAC 59.703 44.000 0.00 0.00 35.69 4.02
3296 4969 4.202151 GCAATTTCCCATGGGTTTAGCTAG 60.202 45.833 30.28 14.24 36.47 3.42
3341 5015 9.090692 CTTCAATTGAGAACATGTTGAAGTTTT 57.909 29.630 17.58 0.00 43.78 2.43
3367 5041 7.499292 TGATGTTTTGATTTTGTTGGTCATCT 58.501 30.769 0.00 0.00 32.21 2.90
3368 5042 8.637099 TGATGTTTTGATTTTGTTGGTCATCTA 58.363 29.630 0.00 0.00 32.21 1.98
3369 5043 8.816640 ATGTTTTGATTTTGTTGGTCATCTAC 57.183 30.769 0.00 0.00 0.00 2.59
3370 5044 6.915300 TGTTTTGATTTTGTTGGTCATCTACG 59.085 34.615 0.00 0.00 0.00 3.51
3672 5446 4.324267 AGGAGGTAACCGAAACATTTCAG 58.676 43.478 5.28 0.00 37.01 3.02
3674 5448 3.482436 AGGTAACCGAAACATTTCAGCA 58.518 40.909 5.28 0.00 37.01 4.41
3702 5476 7.542025 AGGACATTATTTCTGCAATTGTTCTC 58.458 34.615 7.40 0.00 0.00 2.87
3770 5544 5.815581 ACCTTCATACTTTGGCAGTTATGA 58.184 37.500 9.47 9.47 36.88 2.15
3822 5596 4.381566 GTGCGTTGTGTAATTTGTCCATTC 59.618 41.667 0.00 0.00 0.00 2.67
3852 5626 8.991243 TTCAGATTGGAAATCTTTTTATGCAG 57.009 30.769 0.00 0.00 0.00 4.41
3961 6953 1.602377 AGGTTTCTGCGTTGCTGTTAC 59.398 47.619 0.00 0.00 0.00 2.50
4473 7467 4.579869 TGGCTAGAAAAACTAAGAGCTGG 58.420 43.478 0.00 0.00 30.88 4.85
4575 7569 3.895232 TGGTGAGTAGCAAATCCTCTC 57.105 47.619 0.00 0.00 0.00 3.20
4757 7755 2.031870 GGCCAGAACAGTGAAGGTTTT 58.968 47.619 0.00 0.00 0.00 2.43
4838 7836 2.553602 CTGACAGCCAGCAACATTACAA 59.446 45.455 0.00 0.00 35.89 2.41
4881 7879 6.135454 TCCATTGCATTTTAGATACACCCAT 58.865 36.000 0.00 0.00 0.00 4.00
4882 7880 6.265196 TCCATTGCATTTTAGATACACCCATC 59.735 38.462 0.00 0.00 0.00 3.51
5094 8092 2.031870 GCTGTTTCCAGTCCCTTTGTT 58.968 47.619 0.00 0.00 41.02 2.83
5095 8093 2.223805 GCTGTTTCCAGTCCCTTTGTTG 60.224 50.000 0.00 0.00 41.02 3.33
5096 8094 3.023832 CTGTTTCCAGTCCCTTTGTTGT 58.976 45.455 0.00 0.00 33.80 3.32
5180 8178 8.697292 TCATGCATCCTGAATGAAAATTATGAA 58.303 29.630 0.00 0.00 39.39 2.57
5206 8204 1.281867 TGTGGGATTGAGCCGAGATTT 59.718 47.619 0.00 0.00 0.00 2.17
5214 8212 5.178438 GGATTGAGCCGAGATTTAAGTCATC 59.822 44.000 0.44 0.00 0.00 2.92
5221 8219 3.060674 CGAGATTTAAGTCATCTGCAGCG 60.061 47.826 9.47 2.31 30.70 5.18
5235 8233 0.247974 GCAGCGACATCTGAATGTGC 60.248 55.000 0.00 1.24 46.20 4.57
5269 8267 7.439381 ACGGAGAAACTGTTCTAAATTCTACA 58.561 34.615 0.00 0.00 44.42 2.74
5380 8381 8.934023 TTTCTAGAAGGTGGTCAAATTGTTAT 57.066 30.769 5.12 0.00 0.00 1.89
5382 8383 8.335532 TCTAGAAGGTGGTCAAATTGTTATTG 57.664 34.615 0.00 0.00 0.00 1.90
5407 8408 7.549134 TGATACAATCCTGTAGCAGTAAAGTTG 59.451 37.037 0.00 0.00 46.71 3.16
5415 8416 3.146104 AGCAGTAAAGTTGGATGCAGT 57.854 42.857 8.59 0.00 39.34 4.40
5416 8417 3.490348 AGCAGTAAAGTTGGATGCAGTT 58.510 40.909 8.59 0.00 39.34 3.16
5417 8418 3.254166 AGCAGTAAAGTTGGATGCAGTTG 59.746 43.478 8.59 0.00 39.34 3.16
5418 8419 3.253188 GCAGTAAAGTTGGATGCAGTTGA 59.747 43.478 0.00 0.00 36.88 3.18
5419 8420 4.261572 GCAGTAAAGTTGGATGCAGTTGAA 60.262 41.667 0.00 0.00 36.88 2.69
5420 8421 5.215160 CAGTAAAGTTGGATGCAGTTGAAC 58.785 41.667 0.00 0.00 0.00 3.18
5421 8422 5.009010 CAGTAAAGTTGGATGCAGTTGAACT 59.991 40.000 0.00 0.00 0.00 3.01
5422 8423 5.594317 AGTAAAGTTGGATGCAGTTGAACTT 59.406 36.000 0.00 9.10 38.25 2.66
5423 8424 5.343307 AAAGTTGGATGCAGTTGAACTTT 57.657 34.783 16.78 16.78 40.38 2.66
5424 8425 5.343307 AAGTTGGATGCAGTTGAACTTTT 57.657 34.783 0.00 0.00 34.03 2.27
5425 8426 5.343307 AGTTGGATGCAGTTGAACTTTTT 57.657 34.783 0.00 0.00 0.00 1.94
5426 8427 5.351458 AGTTGGATGCAGTTGAACTTTTTC 58.649 37.500 0.00 0.00 0.00 2.29
5427 8428 4.998671 TGGATGCAGTTGAACTTTTTCA 57.001 36.364 0.00 0.00 40.14 2.69
5440 8441 8.438676 TTGAACTTTTTCAAAACCAACTTTGA 57.561 26.923 0.00 0.00 46.59 2.69
5441 8442 8.614469 TGAACTTTTTCAAAACCAACTTTGAT 57.386 26.923 0.00 0.00 43.12 2.57
5442 8443 8.502387 TGAACTTTTTCAAAACCAACTTTGATG 58.498 29.630 0.00 0.00 43.12 3.07
5443 8444 6.841119 ACTTTTTCAAAACCAACTTTGATGC 58.159 32.000 0.00 0.00 43.12 3.91
5444 8445 6.654582 ACTTTTTCAAAACCAACTTTGATGCT 59.345 30.769 0.00 0.00 43.12 3.79
5445 8446 7.821846 ACTTTTTCAAAACCAACTTTGATGCTA 59.178 29.630 0.00 0.00 43.12 3.49
5446 8447 7.532682 TTTTCAAAACCAACTTTGATGCTAC 57.467 32.000 0.00 0.00 43.12 3.58
5447 8448 6.463995 TTCAAAACCAACTTTGATGCTACT 57.536 33.333 0.00 0.00 43.12 2.57
5448 8449 5.830912 TCAAAACCAACTTTGATGCTACTG 58.169 37.500 0.00 0.00 39.74 2.74
5449 8450 4.853924 AAACCAACTTTGATGCTACTGG 57.146 40.909 0.00 0.00 0.00 4.00
5450 8451 2.795329 ACCAACTTTGATGCTACTGGG 58.205 47.619 0.00 0.00 0.00 4.45
5451 8452 1.474077 CCAACTTTGATGCTACTGGGC 59.526 52.381 0.00 0.00 0.00 5.36
5452 8453 1.131126 CAACTTTGATGCTACTGGGCG 59.869 52.381 0.00 0.00 34.52 6.13
5453 8454 0.324943 ACTTTGATGCTACTGGGCGT 59.675 50.000 0.00 0.00 34.52 5.68
5454 8455 1.009829 CTTTGATGCTACTGGGCGTC 58.990 55.000 9.20 9.20 45.41 5.19
5455 8456 0.392461 TTTGATGCTACTGGGCGTCC 60.392 55.000 0.00 0.00 44.82 4.79
5456 8457 1.549243 TTGATGCTACTGGGCGTCCA 61.549 55.000 9.26 9.26 44.82 4.02
5457 8458 1.521681 GATGCTACTGGGCGTCCAC 60.522 63.158 3.51 0.00 41.01 4.02
5458 8459 1.961180 GATGCTACTGGGCGTCCACT 61.961 60.000 3.51 0.00 41.01 4.00
5459 8460 2.125512 GCTACTGGGCGTCCACTG 60.126 66.667 3.51 0.00 38.32 3.66
5460 8461 2.579201 CTACTGGGCGTCCACTGG 59.421 66.667 3.51 0.00 38.32 4.00
5461 8462 3.665675 CTACTGGGCGTCCACTGGC 62.666 68.421 3.51 0.00 38.32 4.85
5510 8511 3.884350 CGACGTGCTAGGCGGCTA 61.884 66.667 18.65 18.65 34.79 3.93
5511 8512 2.026301 GACGTGCTAGGCGGCTAG 59.974 66.667 34.85 34.85 34.02 3.42
5512 8513 3.486252 GACGTGCTAGGCGGCTAGG 62.486 68.421 37.71 26.72 34.02 3.02
5513 8514 4.286320 CGTGCTAGGCGGCTAGGG 62.286 72.222 37.71 21.42 0.00 3.53
5514 8515 3.155167 GTGCTAGGCGGCTAGGGT 61.155 66.667 37.71 10.43 0.00 4.34
5515 8516 2.365105 TGCTAGGCGGCTAGGGTT 60.365 61.111 37.71 9.68 0.00 4.11
5516 8517 1.075822 TGCTAGGCGGCTAGGGTTA 60.076 57.895 37.71 12.09 0.00 2.85
5517 8518 1.113517 TGCTAGGCGGCTAGGGTTAG 61.114 60.000 37.71 21.25 0.00 2.34
5525 8526 3.688553 GCTAGGGTTAGCGCTTCAT 57.311 52.632 18.68 6.35 42.60 2.57
5526 8527 1.221414 GCTAGGGTTAGCGCTTCATG 58.779 55.000 18.68 0.89 42.60 3.07
5527 8528 1.871080 CTAGGGTTAGCGCTTCATGG 58.129 55.000 18.68 1.65 38.85 3.66
5528 8529 1.412710 CTAGGGTTAGCGCTTCATGGA 59.587 52.381 18.68 0.00 38.85 3.41
5529 8530 0.179000 AGGGTTAGCGCTTCATGGAG 59.821 55.000 18.68 0.00 33.88 3.86
5530 8531 1.440145 GGGTTAGCGCTTCATGGAGC 61.440 60.000 18.68 16.69 39.29 4.70
5531 8532 0.744414 GGTTAGCGCTTCATGGAGCA 60.744 55.000 25.59 3.38 42.83 4.26
5532 8533 0.375106 GTTAGCGCTTCATGGAGCAC 59.625 55.000 25.59 16.46 42.83 4.40
5533 8534 0.250234 TTAGCGCTTCATGGAGCACT 59.750 50.000 25.59 22.76 42.83 4.40
5534 8535 0.250234 TAGCGCTTCATGGAGCACTT 59.750 50.000 25.59 12.27 42.83 3.16
5535 8536 1.136147 GCGCTTCATGGAGCACTTG 59.864 57.895 25.59 10.34 42.83 3.16
5536 8537 1.300971 GCGCTTCATGGAGCACTTGA 61.301 55.000 25.59 0.00 42.83 3.02
5537 8538 1.159285 CGCTTCATGGAGCACTTGAA 58.841 50.000 25.59 8.67 42.83 2.69
5538 8539 1.135859 CGCTTCATGGAGCACTTGAAC 60.136 52.381 25.59 0.00 42.83 3.18
5539 8540 1.881973 GCTTCATGGAGCACTTGAACA 59.118 47.619 21.68 0.00 42.25 3.18
5540 8541 2.490903 GCTTCATGGAGCACTTGAACAT 59.509 45.455 21.68 0.00 42.25 2.71
5541 8542 3.427233 GCTTCATGGAGCACTTGAACATC 60.427 47.826 21.68 0.00 42.25 3.06
5542 8543 3.421919 TCATGGAGCACTTGAACATCA 57.578 42.857 0.00 0.00 31.07 3.07
5543 8544 3.959293 TCATGGAGCACTTGAACATCAT 58.041 40.909 0.00 0.00 31.07 2.45
5544 8545 3.943381 TCATGGAGCACTTGAACATCATC 59.057 43.478 0.00 0.00 31.07 2.92
5545 8546 2.349590 TGGAGCACTTGAACATCATCG 58.650 47.619 0.00 0.00 0.00 3.84
5546 8547 1.063174 GGAGCACTTGAACATCATCGC 59.937 52.381 0.00 0.00 0.00 4.58
5547 8548 1.063174 GAGCACTTGAACATCATCGCC 59.937 52.381 0.00 0.00 0.00 5.54
5548 8549 0.247814 GCACTTGAACATCATCGCCG 60.248 55.000 0.00 0.00 0.00 6.46
5549 8550 0.374758 CACTTGAACATCATCGCCGG 59.625 55.000 0.00 0.00 0.00 6.13
5550 8551 1.353103 CTTGAACATCATCGCCGGC 59.647 57.895 19.07 19.07 0.00 6.13
5551 8552 1.078497 TTGAACATCATCGCCGGCT 60.078 52.632 26.68 2.78 0.00 5.52
5552 8553 1.368345 TTGAACATCATCGCCGGCTG 61.368 55.000 26.68 17.61 0.00 4.85
5553 8554 1.521457 GAACATCATCGCCGGCTGA 60.521 57.895 26.68 22.73 0.00 4.26
5554 8555 1.493950 GAACATCATCGCCGGCTGAG 61.494 60.000 26.68 16.92 0.00 3.35
5555 8556 3.344215 CATCATCGCCGGCTGAGC 61.344 66.667 26.68 0.00 0.00 4.26
5581 8582 3.866539 GCTAGGCGGCTAGGGTTA 58.133 61.111 37.71 12.09 0.00 2.85
5582 8583 1.666580 GCTAGGCGGCTAGGGTTAG 59.333 63.158 37.71 21.25 0.00 2.34
5590 8591 3.688553 GCTAGGGTTAGCGCTTCAT 57.311 52.632 18.68 6.35 42.60 2.57
5591 8592 1.221414 GCTAGGGTTAGCGCTTCATG 58.779 55.000 18.68 0.89 42.60 3.07
5592 8593 1.871080 CTAGGGTTAGCGCTTCATGG 58.129 55.000 18.68 1.65 38.85 3.66
5593 8594 1.412710 CTAGGGTTAGCGCTTCATGGA 59.587 52.381 18.68 0.00 38.85 3.41
5594 8595 0.179000 AGGGTTAGCGCTTCATGGAG 59.821 55.000 18.68 0.00 33.88 3.86
5595 8596 1.440145 GGGTTAGCGCTTCATGGAGC 61.440 60.000 18.68 16.69 39.29 4.70
5596 8597 0.744414 GGTTAGCGCTTCATGGAGCA 60.744 55.000 25.59 3.38 42.83 4.26
5597 8598 0.375106 GTTAGCGCTTCATGGAGCAC 59.625 55.000 25.59 16.46 42.83 4.40
5598 8599 0.250234 TTAGCGCTTCATGGAGCACT 59.750 50.000 25.59 22.76 42.83 4.40
5599 8600 0.250234 TAGCGCTTCATGGAGCACTT 59.750 50.000 25.59 12.27 42.83 3.16
5600 8601 1.136147 GCGCTTCATGGAGCACTTG 59.864 57.895 25.59 10.34 42.83 3.16
5601 8602 1.300971 GCGCTTCATGGAGCACTTGA 61.301 55.000 25.59 0.00 42.83 3.02
5602 8603 1.159285 CGCTTCATGGAGCACTTGAA 58.841 50.000 25.59 8.67 42.83 2.69
5603 8604 1.135859 CGCTTCATGGAGCACTTGAAC 60.136 52.381 25.59 0.00 42.83 3.18
5604 8605 1.881973 GCTTCATGGAGCACTTGAACA 59.118 47.619 21.68 0.00 42.25 3.18
5605 8606 2.490903 GCTTCATGGAGCACTTGAACAT 59.509 45.455 21.68 0.00 42.25 2.71
5606 8607 3.427233 GCTTCATGGAGCACTTGAACATC 60.427 47.826 21.68 0.00 42.25 3.06
5607 8608 3.421919 TCATGGAGCACTTGAACATCA 57.578 42.857 0.00 0.00 31.07 3.07
5608 8609 3.959293 TCATGGAGCACTTGAACATCAT 58.041 40.909 0.00 0.00 31.07 2.45
5609 8610 3.943381 TCATGGAGCACTTGAACATCATC 59.057 43.478 0.00 0.00 31.07 2.92
5610 8611 2.349590 TGGAGCACTTGAACATCATCG 58.650 47.619 0.00 0.00 0.00 3.84
5611 8612 1.063174 GGAGCACTTGAACATCATCGC 59.937 52.381 0.00 0.00 0.00 4.58
5612 8613 0.723414 AGCACTTGAACATCATCGCG 59.277 50.000 0.00 0.00 0.00 5.87
5613 8614 0.247814 GCACTTGAACATCATCGCGG 60.248 55.000 6.13 0.00 0.00 6.46
5614 8615 0.374758 CACTTGAACATCATCGCGGG 59.625 55.000 6.13 0.00 0.00 6.13
5615 8616 1.353103 CTTGAACATCATCGCGGGC 59.647 57.895 6.13 0.00 0.00 6.13
5616 8617 2.051804 CTTGAACATCATCGCGGGCC 62.052 60.000 6.13 0.00 0.00 5.80
5617 8618 3.640000 GAACATCATCGCGGGCCG 61.640 66.667 24.35 24.35 38.61 6.13
5646 8647 3.541831 CGCCGTCGACGTTCCATG 61.542 66.667 33.49 19.45 38.10 3.66
5647 8648 2.431942 GCCGTCGACGTTCCATGT 60.432 61.111 33.49 0.00 37.74 3.21
5648 8649 2.025418 GCCGTCGACGTTCCATGTT 61.025 57.895 33.49 0.00 37.74 2.71
5649 8650 1.562575 GCCGTCGACGTTCCATGTTT 61.563 55.000 33.49 0.00 37.74 2.83
5650 8651 1.700523 CCGTCGACGTTCCATGTTTA 58.299 50.000 33.49 0.00 37.74 2.01
5651 8652 1.652124 CCGTCGACGTTCCATGTTTAG 59.348 52.381 33.49 12.11 37.74 1.85
5652 8653 1.058695 CGTCGACGTTCCATGTTTAGC 59.941 52.381 29.08 0.00 34.11 3.09
5653 8654 2.063266 GTCGACGTTCCATGTTTAGCA 58.937 47.619 0.00 0.00 0.00 3.49
5654 8655 2.477375 GTCGACGTTCCATGTTTAGCAA 59.523 45.455 0.00 0.00 0.00 3.91
5655 8656 3.059461 GTCGACGTTCCATGTTTAGCAAA 60.059 43.478 0.00 0.00 0.00 3.68
5656 8657 3.185594 TCGACGTTCCATGTTTAGCAAAG 59.814 43.478 0.00 0.00 0.00 2.77
5657 8658 3.234386 GACGTTCCATGTTTAGCAAAGC 58.766 45.455 0.00 0.00 0.00 3.51
5658 8659 2.884639 ACGTTCCATGTTTAGCAAAGCT 59.115 40.909 0.00 0.00 43.41 3.74
5659 8660 3.058224 ACGTTCCATGTTTAGCAAAGCTC 60.058 43.478 0.00 0.00 40.44 4.09
5660 8661 3.189287 CGTTCCATGTTTAGCAAAGCTCT 59.811 43.478 0.00 0.00 40.44 4.09
5661 8662 4.670221 CGTTCCATGTTTAGCAAAGCTCTC 60.670 45.833 0.00 0.00 40.44 3.20
5662 8663 4.019792 TCCATGTTTAGCAAAGCTCTCA 57.980 40.909 0.00 0.00 40.44 3.27
5663 8664 3.753272 TCCATGTTTAGCAAAGCTCTCAC 59.247 43.478 0.00 0.00 40.44 3.51
5664 8665 3.755378 CCATGTTTAGCAAAGCTCTCACT 59.245 43.478 0.00 0.00 40.44 3.41
5665 8666 4.142730 CCATGTTTAGCAAAGCTCTCACTC 60.143 45.833 0.00 0.00 40.44 3.51
5666 8667 4.071961 TGTTTAGCAAAGCTCTCACTCA 57.928 40.909 0.00 0.00 40.44 3.41
5667 8668 4.645535 TGTTTAGCAAAGCTCTCACTCAT 58.354 39.130 0.00 0.00 40.44 2.90
5668 8669 4.692625 TGTTTAGCAAAGCTCTCACTCATC 59.307 41.667 0.00 0.00 40.44 2.92
5669 8670 4.541973 TTAGCAAAGCTCTCACTCATCA 57.458 40.909 0.00 0.00 40.44 3.07
5670 8671 3.413846 AGCAAAGCTCTCACTCATCAA 57.586 42.857 0.00 0.00 30.62 2.57
5671 8672 3.952931 AGCAAAGCTCTCACTCATCAAT 58.047 40.909 0.00 0.00 30.62 2.57
5672 8673 3.940221 AGCAAAGCTCTCACTCATCAATC 59.060 43.478 0.00 0.00 30.62 2.67
5673 8674 3.065095 GCAAAGCTCTCACTCATCAATCC 59.935 47.826 0.00 0.00 0.00 3.01
5674 8675 4.259356 CAAAGCTCTCACTCATCAATCCA 58.741 43.478 0.00 0.00 0.00 3.41
5675 8676 3.823281 AGCTCTCACTCATCAATCCAG 57.177 47.619 0.00 0.00 0.00 3.86
5676 8677 3.106054 AGCTCTCACTCATCAATCCAGT 58.894 45.455 0.00 0.00 0.00 4.00
5677 8678 4.285020 AGCTCTCACTCATCAATCCAGTA 58.715 43.478 0.00 0.00 0.00 2.74
5678 8679 4.099266 AGCTCTCACTCATCAATCCAGTAC 59.901 45.833 0.00 0.00 0.00 2.73
5679 8680 4.142071 GCTCTCACTCATCAATCCAGTACA 60.142 45.833 0.00 0.00 0.00 2.90
5680 8681 5.625426 GCTCTCACTCATCAATCCAGTACAA 60.625 44.000 0.00 0.00 0.00 2.41
5681 8682 6.550938 TCTCACTCATCAATCCAGTACAAT 57.449 37.500 0.00 0.00 0.00 2.71
5682 8683 6.950842 TCTCACTCATCAATCCAGTACAATT 58.049 36.000 0.00 0.00 0.00 2.32
5683 8684 7.044181 TCTCACTCATCAATCCAGTACAATTC 58.956 38.462 0.00 0.00 0.00 2.17
5684 8685 6.950842 TCACTCATCAATCCAGTACAATTCT 58.049 36.000 0.00 0.00 0.00 2.40
5685 8686 8.078060 TCACTCATCAATCCAGTACAATTCTA 57.922 34.615 0.00 0.00 0.00 2.10
5686 8687 7.981789 TCACTCATCAATCCAGTACAATTCTAC 59.018 37.037 0.00 0.00 0.00 2.59
5687 8688 6.980978 ACTCATCAATCCAGTACAATTCTACG 59.019 38.462 0.00 0.00 0.00 3.51
5688 8689 6.280643 TCATCAATCCAGTACAATTCTACGG 58.719 40.000 0.00 0.00 0.00 4.02
5689 8690 5.018539 TCAATCCAGTACAATTCTACGGG 57.981 43.478 4.09 4.09 34.29 5.28
5690 8691 4.712829 TCAATCCAGTACAATTCTACGGGA 59.287 41.667 13.45 13.45 42.81 5.14
5691 8692 4.667519 ATCCAGTACAATTCTACGGGAC 57.332 45.455 13.38 0.00 41.86 4.46
5692 8693 3.433343 TCCAGTACAATTCTACGGGACA 58.567 45.455 8.32 0.00 36.43 4.02
5693 8694 3.833650 TCCAGTACAATTCTACGGGACAA 59.166 43.478 8.32 0.00 36.43 3.18
5694 8695 4.468510 TCCAGTACAATTCTACGGGACAAT 59.531 41.667 8.32 0.00 36.43 2.71
5695 8696 4.570772 CCAGTACAATTCTACGGGACAATG 59.429 45.833 4.41 0.00 34.77 2.82
5696 8697 5.416083 CAGTACAATTCTACGGGACAATGA 58.584 41.667 0.00 0.00 0.00 2.57
5697 8698 6.049149 CAGTACAATTCTACGGGACAATGAT 58.951 40.000 0.00 0.00 0.00 2.45
5698 8699 6.201044 CAGTACAATTCTACGGGACAATGATC 59.799 42.308 0.00 0.00 0.00 2.92
5699 8700 5.097742 ACAATTCTACGGGACAATGATCA 57.902 39.130 0.00 0.00 0.00 2.92
5700 8701 5.118990 ACAATTCTACGGGACAATGATCAG 58.881 41.667 0.09 0.00 0.00 2.90
5701 8702 2.890808 TCTACGGGACAATGATCAGC 57.109 50.000 0.09 0.00 0.00 4.26
5702 8703 1.412710 TCTACGGGACAATGATCAGCC 59.587 52.381 0.09 0.00 0.00 4.85
5703 8704 0.104120 TACGGGACAATGATCAGCCG 59.896 55.000 0.09 0.00 31.82 5.52
5704 8705 1.889105 CGGGACAATGATCAGCCGG 60.889 63.158 0.09 0.00 0.00 6.13
5705 8706 1.526917 GGGACAATGATCAGCCGGG 60.527 63.158 2.18 0.00 0.00 5.73
5706 8707 2.189499 GGACAATGATCAGCCGGGC 61.189 63.158 12.11 12.11 0.00 6.13
5707 8708 2.514592 ACAATGATCAGCCGGGCG 60.515 61.111 14.39 8.94 0.00 6.13
5708 8709 3.282157 CAATGATCAGCCGGGCGG 61.282 66.667 14.39 13.84 38.57 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 7.334171 GGATGTAGCATTTTTAAGCATTGGTTT 59.666 33.333 6.39 0.00 0.00 3.27
16 17 3.181491 GCTTGCCGGATGTAGCATTTTTA 60.181 43.478 5.05 0.00 39.11 1.52
127 129 0.614979 TGTAGCTTTCCTCCTCGCCT 60.615 55.000 0.00 0.00 0.00 5.52
132 134 0.389948 CGCGTTGTAGCTTTCCTCCT 60.390 55.000 0.00 0.00 34.40 3.69
359 635 3.515286 CATCGCAGCTTGCCAGGG 61.515 66.667 3.09 0.00 41.12 4.45
360 636 3.515286 CCATCGCAGCTTGCCAGG 61.515 66.667 3.09 0.00 41.12 4.45
361 637 4.189188 GCCATCGCAGCTTGCCAG 62.189 66.667 3.09 0.00 41.12 4.85
364 640 3.803082 TTCGCCATCGCAGCTTGC 61.803 61.111 0.00 0.00 40.69 4.01
365 641 2.099062 GTTCGCCATCGCAGCTTG 59.901 61.111 0.00 0.00 35.26 4.01
366 642 3.490759 CGTTCGCCATCGCAGCTT 61.491 61.111 0.00 0.00 35.26 3.74
444 747 2.286025 ACGCGTAAACACAGGAAAAGAC 59.714 45.455 11.67 0.00 0.00 3.01
446 749 2.635444 CACGCGTAAACACAGGAAAAG 58.365 47.619 13.44 0.00 0.00 2.27
482 785 3.195698 GCCGCGACCAAGTCATCC 61.196 66.667 8.23 0.00 32.09 3.51
547 850 0.606096 GCACCGGCTTAAATTTGGGT 59.394 50.000 0.00 0.00 36.96 4.51
633 938 5.909477 AGATTAATCCAACGTCCGTATGAA 58.091 37.500 11.92 0.00 0.00 2.57
690 1281 6.019075 TGCTCCGTGACAATCGAAAAATATAG 60.019 38.462 0.00 0.00 0.00 1.31
735 1327 1.852067 CGCTGTTCTTGTTTCCGGGG 61.852 60.000 0.00 0.00 0.00 5.73
994 1607 2.516460 GAGGCTCTGCATGGCTGG 60.516 66.667 18.10 0.00 40.49 4.85
1194 1843 2.044650 AGGCGGTCGTAGTAGGCA 60.045 61.111 0.00 0.00 0.00 4.75
1434 2083 3.554324 GGCAAGCATAAAGCATGTGATTG 59.446 43.478 11.18 11.18 45.81 2.67
1440 2089 4.989435 GCAGGGGCAAGCATAAAGCATG 62.989 54.545 0.00 0.00 44.45 4.06
1441 2090 2.910440 GCAGGGGCAAGCATAAAGCAT 61.910 52.381 0.00 0.00 42.95 3.79
1443 2092 1.142531 GCAGGGGCAAGCATAAAGC 59.857 57.895 0.00 0.00 41.53 3.51
1444 2093 1.679559 GGGCAGGGGCAAGCATAAAG 61.680 60.000 0.00 0.00 43.71 1.85
1445 2094 1.685421 GGGCAGGGGCAAGCATAAA 60.685 57.895 0.00 0.00 43.71 1.40
1446 2095 2.043046 GGGCAGGGGCAAGCATAA 60.043 61.111 0.00 0.00 43.71 1.90
1447 2096 4.141876 GGGGCAGGGGCAAGCATA 62.142 66.667 0.00 0.00 43.71 3.14
1451 2100 4.447342 AATCGGGGCAGGGGCAAG 62.447 66.667 0.00 0.00 43.71 4.01
1452 2101 4.440829 GAATCGGGGCAGGGGCAA 62.441 66.667 0.00 0.00 43.71 4.52
1454 2103 3.955543 TTTGAATCGGGGCAGGGGC 62.956 63.158 0.00 0.00 40.13 5.80
1459 2108 1.337635 GCATTTGTTTGAATCGGGGCA 60.338 47.619 0.00 0.00 0.00 5.36
1462 2111 1.994779 GCAGCATTTGTTTGAATCGGG 59.005 47.619 0.00 0.00 0.00 5.14
1489 2138 3.006537 GCGCCTGATCTGGTTATTAGGTA 59.993 47.826 18.82 0.00 35.55 3.08
1568 2218 5.416271 AGAGCGAAATCTACCAGGTTTTA 57.584 39.130 0.00 0.00 0.00 1.52
1616 2267 9.436957 CCGATCTATAAAAGGTGCTGTATTATT 57.563 33.333 0.00 0.00 0.00 1.40
1626 2277 4.003648 GGCCATCCGATCTATAAAAGGTG 58.996 47.826 0.00 0.00 0.00 4.00
1660 2311 6.093219 GCAGATAGCATCTCAGAACAAGAAAA 59.907 38.462 0.00 0.00 44.79 2.29
1665 2316 3.131046 TCGCAGATAGCATCTCAGAACAA 59.869 43.478 0.00 0.00 46.13 2.83
1667 2318 3.307674 CTCGCAGATAGCATCTCAGAAC 58.692 50.000 0.00 0.00 46.13 3.01
1689 2346 2.209838 TGCACAAGCGCTCTACTATC 57.790 50.000 12.06 0.00 46.23 2.08
1703 2360 3.760151 CTCATTCTTCCTGGATTTGCACA 59.240 43.478 0.00 0.00 0.00 4.57
1791 2448 3.445008 TCATTACTCCAGCTGTTCCTCT 58.555 45.455 13.81 0.00 0.00 3.69
1793 2450 3.135530 GGATCATTACTCCAGCTGTTCCT 59.864 47.826 13.81 0.00 32.72 3.36
1795 2452 3.118261 TGGGATCATTACTCCAGCTGTTC 60.118 47.826 13.81 0.00 34.24 3.18
1890 3075 9.269453 TCTCTGTTTTGCATATAAGATCATCAG 57.731 33.333 0.00 0.00 0.00 2.90
1979 3570 4.986054 TTCAACTACTGCCCTTTTAGGA 57.014 40.909 0.00 0.00 37.67 2.94
2107 3757 0.917259 GAACGCAGTGACATCGCTAG 59.083 55.000 0.00 0.00 45.00 3.42
2219 3869 2.578021 AGAGTGTGTTGGCCCATAATCT 59.422 45.455 0.00 1.13 0.00 2.40
2220 3870 3.004752 AGAGTGTGTTGGCCCATAATC 57.995 47.619 0.00 0.00 0.00 1.75
2227 3877 6.569179 TTCTTAATAAAGAGTGTGTTGGCC 57.431 37.500 0.00 0.00 42.60 5.36
2259 3911 4.423625 AACCAACTGAGTAAAGCAGAGT 57.576 40.909 0.00 0.00 36.86 3.24
2320 3972 7.365741 AGTGACATCAAATGACAAAACAGATC 58.634 34.615 0.00 0.00 36.75 2.75
2361 4013 6.349300 ACTTAGTCCTAGTGTGCATATTTGG 58.651 40.000 0.47 0.47 0.00 3.28
2406 4058 5.708230 TCAACCTTACGAAAAGCCAATACAT 59.292 36.000 0.00 0.00 0.00 2.29
2407 4059 5.064558 TCAACCTTACGAAAAGCCAATACA 58.935 37.500 0.00 0.00 0.00 2.29
2465 4121 3.382865 TGGTGAAAACAAATGTAGCAGCA 59.617 39.130 0.00 9.51 32.61 4.41
2526 4182 7.434897 GTCAATCTGTCAGAGAGCATTTACTAG 59.565 40.741 8.82 0.00 32.80 2.57
2529 4185 5.871524 TGTCAATCTGTCAGAGAGCATTTAC 59.128 40.000 8.82 0.37 32.80 2.01
2702 4360 0.971959 TGAAGCCAATGTCCATGCCC 60.972 55.000 0.00 0.00 0.00 5.36
3065 4729 7.933215 AATATAGTTCAGTTTAAAGGCCGTT 57.067 32.000 9.44 9.44 0.00 4.44
3212 4882 2.183478 TGAGTCCAAACACGCATCAT 57.817 45.000 0.00 0.00 0.00 2.45
3218 4888 3.374058 AGTTTCACTTGAGTCCAAACACG 59.626 43.478 13.63 0.00 33.46 4.49
3280 4953 1.760613 TCGACTAGCTAAACCCATGGG 59.239 52.381 30.23 30.23 42.03 4.00
3296 4969 7.647907 TTGAAGTATTTAAGGTTGACTCGAC 57.352 36.000 0.00 0.00 0.00 4.20
3341 5015 7.986320 AGATGACCAACAAAATCAAAACATCAA 59.014 29.630 0.00 0.00 34.73 2.57
3359 5033 9.343539 CTATGATAGGAATATCGTAGATGACCA 57.656 37.037 15.03 0.00 43.62 4.02
3672 5446 7.707893 ACAATTGCAGAAATAATGTCCTAATGC 59.292 33.333 5.05 0.00 0.00 3.56
3674 5448 9.807649 GAACAATTGCAGAAATAATGTCCTAAT 57.192 29.630 5.05 0.00 0.00 1.73
3702 5476 8.734386 GGGAACTAGCCAATATCATATGAAAAG 58.266 37.037 9.99 0.47 0.00 2.27
3756 5530 4.521146 AGGATCACTCATAACTGCCAAAG 58.479 43.478 0.00 0.00 0.00 2.77
3770 5544 8.421249 TGGAAACAATAATTTGAAGGATCACT 57.579 30.769 0.00 0.00 37.44 3.41
3852 5626 6.498304 CCAGCCATGATGACTTTAATGTTAC 58.502 40.000 0.00 0.00 0.00 2.50
4473 7467 3.560068 CCGGTCCTGCAGTTAACATATTC 59.440 47.826 13.81 0.00 0.00 1.75
4575 7569 3.188460 ACAGTACAATTGCGCTACAAAGG 59.812 43.478 9.73 0.00 42.86 3.11
4838 7836 4.042884 TGGATCTTGGATCCTCTGTTCAT 58.957 43.478 22.16 0.00 38.95 2.57
4881 7879 6.071334 ACAGTGTTCTCAAATCTAATCGGAGA 60.071 38.462 0.00 0.00 45.75 3.71
4882 7880 6.035435 CACAGTGTTCTCAAATCTAATCGGAG 59.965 42.308 0.00 0.00 0.00 4.63
5142 8140 4.885907 CAGGATGCATGACCATTTTAGACT 59.114 41.667 2.46 0.00 0.00 3.24
5180 8178 1.679944 CGGCTCAATCCCACAACAGAT 60.680 52.381 0.00 0.00 0.00 2.90
5206 8204 2.428530 AGATGTCGCTGCAGATGACTTA 59.571 45.455 28.57 16.82 33.81 2.24
5214 8212 1.062148 CACATTCAGATGTCGCTGCAG 59.938 52.381 10.11 10.11 44.55 4.41
5221 8219 2.062971 ATGGGGCACATTCAGATGTC 57.937 50.000 0.00 0.00 44.55 3.06
5235 8233 3.418047 ACAGTTTCTCCGTAAAATGGGG 58.582 45.455 0.00 0.00 38.42 4.96
5339 8337 8.188799 CCTTCTAGAAAACTATACGACATGTGA 58.811 37.037 1.15 0.00 0.00 3.58
5355 8353 8.934023 ATAACAATTTGACCACCTTCTAGAAA 57.066 30.769 6.63 0.00 0.00 2.52
5356 8354 8.792633 CAATAACAATTTGACCACCTTCTAGAA 58.207 33.333 4.81 4.81 0.00 2.10
5357 8355 8.160765 TCAATAACAATTTGACCACCTTCTAGA 58.839 33.333 2.79 0.00 0.00 2.43
5380 8381 7.620880 ACTTTACTGCTACAGGATTGTATCAA 58.379 34.615 0.00 0.00 39.00 2.57
5382 8383 7.011482 CCAACTTTACTGCTACAGGATTGTATC 59.989 40.741 0.00 0.00 39.00 2.24
5399 8400 5.438761 AGTTCAACTGCATCCAACTTTAC 57.561 39.130 0.00 0.00 0.00 2.01
5403 8404 5.105392 TGAAAAAGTTCAACTGCATCCAACT 60.105 36.000 0.00 0.00 40.87 3.16
5416 8417 8.502387 CATCAAAGTTGGTTTTGAAAAAGTTCA 58.498 29.630 5.41 0.00 46.63 3.18
5417 8418 7.481483 GCATCAAAGTTGGTTTTGAAAAAGTTC 59.519 33.333 5.41 0.00 46.63 3.01
5418 8419 7.174772 AGCATCAAAGTTGGTTTTGAAAAAGTT 59.825 29.630 5.41 0.00 46.63 2.66
5419 8420 6.654582 AGCATCAAAGTTGGTTTTGAAAAAGT 59.345 30.769 5.41 0.00 46.63 2.66
5420 8421 7.075674 AGCATCAAAGTTGGTTTTGAAAAAG 57.924 32.000 5.41 0.00 46.63 2.27
5421 8422 7.821846 AGTAGCATCAAAGTTGGTTTTGAAAAA 59.178 29.630 5.41 0.00 46.63 1.94
5422 8423 7.277539 CAGTAGCATCAAAGTTGGTTTTGAAAA 59.722 33.333 5.41 0.00 46.63 2.29
5423 8424 6.756074 CAGTAGCATCAAAGTTGGTTTTGAAA 59.244 34.615 5.41 0.00 46.63 2.69
5424 8425 6.272318 CAGTAGCATCAAAGTTGGTTTTGAA 58.728 36.000 5.41 0.00 46.63 2.69
5426 8427 4.984161 CCAGTAGCATCAAAGTTGGTTTTG 59.016 41.667 0.00 0.00 38.97 2.44
5427 8428 4.039124 CCCAGTAGCATCAAAGTTGGTTTT 59.961 41.667 0.00 0.00 0.00 2.43
5428 8429 3.573967 CCCAGTAGCATCAAAGTTGGTTT 59.426 43.478 0.00 0.00 0.00 3.27
5429 8430 3.157087 CCCAGTAGCATCAAAGTTGGTT 58.843 45.455 0.00 0.00 0.00 3.67
5430 8431 2.795329 CCCAGTAGCATCAAAGTTGGT 58.205 47.619 0.00 0.00 0.00 3.67
5431 8432 1.474077 GCCCAGTAGCATCAAAGTTGG 59.526 52.381 0.00 0.00 0.00 3.77
5432 8433 1.131126 CGCCCAGTAGCATCAAAGTTG 59.869 52.381 0.00 0.00 0.00 3.16
5433 8434 1.271379 ACGCCCAGTAGCATCAAAGTT 60.271 47.619 0.00 0.00 0.00 2.66
5434 8435 0.324943 ACGCCCAGTAGCATCAAAGT 59.675 50.000 0.00 0.00 0.00 2.66
5435 8436 1.009829 GACGCCCAGTAGCATCAAAG 58.990 55.000 0.00 0.00 0.00 2.77
5436 8437 0.392461 GGACGCCCAGTAGCATCAAA 60.392 55.000 0.00 0.00 0.00 2.69
5437 8438 1.220749 GGACGCCCAGTAGCATCAA 59.779 57.895 0.00 0.00 0.00 2.57
5438 8439 1.987306 TGGACGCCCAGTAGCATCA 60.987 57.895 0.00 0.00 37.58 3.07
5439 8440 1.521681 GTGGACGCCCAGTAGCATC 60.522 63.158 0.00 0.00 44.55 3.91
5440 8441 1.990060 AGTGGACGCCCAGTAGCAT 60.990 57.895 0.00 0.00 44.13 3.79
5441 8442 2.603473 AGTGGACGCCCAGTAGCA 60.603 61.111 0.00 0.00 44.13 3.49
5442 8443 2.125512 CAGTGGACGCCCAGTAGC 60.126 66.667 0.00 0.00 44.14 3.58
5443 8444 2.579201 CCAGTGGACGCCCAGTAG 59.421 66.667 1.68 0.00 44.14 2.57
5444 8445 3.702048 GCCAGTGGACGCCCAGTA 61.702 66.667 15.20 0.00 44.14 2.74
5493 8494 3.808771 CTAGCCGCCTAGCACGTCG 62.809 68.421 0.00 0.00 35.06 5.12
5494 8495 2.026301 CTAGCCGCCTAGCACGTC 59.974 66.667 0.00 0.00 35.06 4.34
5495 8496 3.528370 CCTAGCCGCCTAGCACGT 61.528 66.667 0.00 0.00 39.81 4.49
5496 8497 4.286320 CCCTAGCCGCCTAGCACG 62.286 72.222 0.00 0.00 39.81 5.34
5497 8498 1.397390 TAACCCTAGCCGCCTAGCAC 61.397 60.000 0.00 0.00 39.81 4.40
5498 8499 1.075822 TAACCCTAGCCGCCTAGCA 60.076 57.895 0.00 0.00 39.81 3.49
5499 8500 1.666580 CTAACCCTAGCCGCCTAGC 59.333 63.158 0.00 0.00 39.81 3.42
5500 8501 1.666580 GCTAACCCTAGCCGCCTAG 59.333 63.158 0.00 0.00 44.22 3.02
5501 8502 2.198287 CGCTAACCCTAGCCGCCTA 61.198 63.158 0.00 0.00 46.80 3.93
5502 8503 3.537874 CGCTAACCCTAGCCGCCT 61.538 66.667 0.00 0.00 46.80 5.52
5504 8505 3.735037 AAGCGCTAACCCTAGCCGC 62.735 63.158 12.05 10.77 46.80 6.53
5505 8506 1.591863 GAAGCGCTAACCCTAGCCG 60.592 63.158 12.05 0.00 46.80 5.52
5506 8507 0.106894 ATGAAGCGCTAACCCTAGCC 59.893 55.000 12.05 0.00 46.80 3.93
5507 8508 1.221414 CATGAAGCGCTAACCCTAGC 58.779 55.000 12.05 0.00 46.14 3.42
5508 8509 1.412710 TCCATGAAGCGCTAACCCTAG 59.587 52.381 12.05 0.00 0.00 3.02
5509 8510 1.412710 CTCCATGAAGCGCTAACCCTA 59.587 52.381 12.05 0.00 0.00 3.53
5510 8511 0.179000 CTCCATGAAGCGCTAACCCT 59.821 55.000 12.05 0.00 0.00 4.34
5511 8512 1.440145 GCTCCATGAAGCGCTAACCC 61.440 60.000 12.05 0.63 31.56 4.11
5512 8513 0.744414 TGCTCCATGAAGCGCTAACC 60.744 55.000 12.05 3.56 45.54 2.85
5513 8514 0.375106 GTGCTCCATGAAGCGCTAAC 59.625 55.000 12.05 9.16 46.74 2.34
5514 8515 2.767536 GTGCTCCATGAAGCGCTAA 58.232 52.632 12.05 1.76 46.74 3.09
5515 8516 4.521075 GTGCTCCATGAAGCGCTA 57.479 55.556 12.05 0.00 46.74 4.26
5518 8519 1.135859 GTTCAAGTGCTCCATGAAGCG 60.136 52.381 0.00 0.00 45.54 4.68
5519 8520 1.881973 TGTTCAAGTGCTCCATGAAGC 59.118 47.619 0.00 0.00 42.82 3.86
5520 8521 3.754850 TGATGTTCAAGTGCTCCATGAAG 59.245 43.478 0.00 0.00 34.02 3.02
5521 8522 3.753815 TGATGTTCAAGTGCTCCATGAA 58.246 40.909 0.00 1.69 0.00 2.57
5522 8523 3.421919 TGATGTTCAAGTGCTCCATGA 57.578 42.857 0.00 0.00 0.00 3.07
5523 8524 3.242641 CGATGATGTTCAAGTGCTCCATG 60.243 47.826 0.00 0.00 0.00 3.66
5524 8525 2.941064 CGATGATGTTCAAGTGCTCCAT 59.059 45.455 0.00 0.00 0.00 3.41
5525 8526 2.349590 CGATGATGTTCAAGTGCTCCA 58.650 47.619 0.00 0.00 0.00 3.86
5526 8527 1.063174 GCGATGATGTTCAAGTGCTCC 59.937 52.381 0.00 0.00 0.00 4.70
5527 8528 1.063174 GGCGATGATGTTCAAGTGCTC 59.937 52.381 0.00 0.00 0.00 4.26
5528 8529 1.089920 GGCGATGATGTTCAAGTGCT 58.910 50.000 0.00 0.00 0.00 4.40
5529 8530 0.247814 CGGCGATGATGTTCAAGTGC 60.248 55.000 0.00 0.00 0.00 4.40
5530 8531 0.374758 CCGGCGATGATGTTCAAGTG 59.625 55.000 9.30 0.00 0.00 3.16
5531 8532 1.369091 GCCGGCGATGATGTTCAAGT 61.369 55.000 12.58 0.00 0.00 3.16
5532 8533 1.091771 AGCCGGCGATGATGTTCAAG 61.092 55.000 23.20 0.00 0.00 3.02
5533 8534 1.078497 AGCCGGCGATGATGTTCAA 60.078 52.632 23.20 0.00 0.00 2.69
5534 8535 1.815003 CAGCCGGCGATGATGTTCA 60.815 57.895 23.20 0.00 0.00 3.18
5535 8536 1.493950 CTCAGCCGGCGATGATGTTC 61.494 60.000 23.20 0.00 0.00 3.18
5536 8537 1.522355 CTCAGCCGGCGATGATGTT 60.522 57.895 23.20 0.00 0.00 2.71
5537 8538 2.107750 CTCAGCCGGCGATGATGT 59.892 61.111 23.20 0.00 0.00 3.06
5538 8539 3.344215 GCTCAGCCGGCGATGATG 61.344 66.667 23.20 14.04 0.00 3.07
5564 8565 1.666580 CTAACCCTAGCCGCCTAGC 59.333 63.158 0.00 0.00 39.81 3.42
5565 8566 1.666580 GCTAACCCTAGCCGCCTAG 59.333 63.158 0.00 0.00 44.22 3.02
5566 8567 2.198287 CGCTAACCCTAGCCGCCTA 61.198 63.158 0.00 0.00 46.80 3.93
5567 8568 3.537874 CGCTAACCCTAGCCGCCT 61.538 66.667 0.00 0.00 46.80 5.52
5569 8570 3.735037 AAGCGCTAACCCTAGCCGC 62.735 63.158 12.05 10.77 46.80 6.53
5570 8571 1.591863 GAAGCGCTAACCCTAGCCG 60.592 63.158 12.05 0.00 46.80 5.52
5571 8572 0.106894 ATGAAGCGCTAACCCTAGCC 59.893 55.000 12.05 0.00 46.80 3.93
5572 8573 1.221414 CATGAAGCGCTAACCCTAGC 58.779 55.000 12.05 0.00 46.14 3.42
5573 8574 1.412710 TCCATGAAGCGCTAACCCTAG 59.587 52.381 12.05 0.00 0.00 3.02
5574 8575 1.412710 CTCCATGAAGCGCTAACCCTA 59.587 52.381 12.05 0.00 0.00 3.53
5575 8576 0.179000 CTCCATGAAGCGCTAACCCT 59.821 55.000 12.05 0.00 0.00 4.34
5576 8577 1.440145 GCTCCATGAAGCGCTAACCC 61.440 60.000 12.05 0.63 31.56 4.11
5577 8578 0.744414 TGCTCCATGAAGCGCTAACC 60.744 55.000 12.05 3.56 45.54 2.85
5578 8579 0.375106 GTGCTCCATGAAGCGCTAAC 59.625 55.000 12.05 9.16 46.74 2.34
5579 8580 2.767536 GTGCTCCATGAAGCGCTAA 58.232 52.632 12.05 1.76 46.74 3.09
5580 8581 4.521075 GTGCTCCATGAAGCGCTA 57.479 55.556 12.05 0.00 46.74 4.26
5583 8584 1.135859 GTTCAAGTGCTCCATGAAGCG 60.136 52.381 0.00 0.00 45.54 4.68
5584 8585 1.881973 TGTTCAAGTGCTCCATGAAGC 59.118 47.619 0.00 0.00 42.82 3.86
5585 8586 3.754850 TGATGTTCAAGTGCTCCATGAAG 59.245 43.478 0.00 0.00 34.02 3.02
5586 8587 3.753815 TGATGTTCAAGTGCTCCATGAA 58.246 40.909 0.00 1.69 0.00 2.57
5587 8588 3.421919 TGATGTTCAAGTGCTCCATGA 57.578 42.857 0.00 0.00 0.00 3.07
5588 8589 3.242641 CGATGATGTTCAAGTGCTCCATG 60.243 47.826 0.00 0.00 0.00 3.66
5589 8590 2.941064 CGATGATGTTCAAGTGCTCCAT 59.059 45.455 0.00 0.00 0.00 3.41
5590 8591 2.349590 CGATGATGTTCAAGTGCTCCA 58.650 47.619 0.00 0.00 0.00 3.86
5591 8592 1.063174 GCGATGATGTTCAAGTGCTCC 59.937 52.381 0.00 0.00 0.00 4.70
5592 8593 1.267235 CGCGATGATGTTCAAGTGCTC 60.267 52.381 0.00 0.00 0.00 4.26
5593 8594 0.723414 CGCGATGATGTTCAAGTGCT 59.277 50.000 0.00 0.00 0.00 4.40
5594 8595 0.247814 CCGCGATGATGTTCAAGTGC 60.248 55.000 8.23 0.00 0.00 4.40
5595 8596 0.374758 CCCGCGATGATGTTCAAGTG 59.625 55.000 8.23 0.00 0.00 3.16
5596 8597 1.369091 GCCCGCGATGATGTTCAAGT 61.369 55.000 8.23 0.00 0.00 3.16
5597 8598 1.353103 GCCCGCGATGATGTTCAAG 59.647 57.895 8.23 0.00 0.00 3.02
5598 8599 2.112198 GGCCCGCGATGATGTTCAA 61.112 57.895 8.23 0.00 0.00 2.69
5599 8600 2.513666 GGCCCGCGATGATGTTCA 60.514 61.111 8.23 0.00 0.00 3.18
5600 8601 3.640000 CGGCCCGCGATGATGTTC 61.640 66.667 8.23 0.00 0.00 3.18
5629 8630 3.541831 CATGGAACGTCGACGGCG 61.542 66.667 37.89 21.79 44.95 6.46
5630 8631 1.562575 AAACATGGAACGTCGACGGC 61.563 55.000 37.89 28.60 44.95 5.68
5631 8632 1.652124 CTAAACATGGAACGTCGACGG 59.348 52.381 37.89 22.84 44.95 4.79
5632 8633 1.058695 GCTAAACATGGAACGTCGACG 59.941 52.381 34.58 34.58 46.33 5.12
5633 8634 2.063266 TGCTAAACATGGAACGTCGAC 58.937 47.619 5.18 5.18 0.00 4.20
5634 8635 2.442212 TGCTAAACATGGAACGTCGA 57.558 45.000 0.00 0.00 0.00 4.20
5635 8636 3.479006 CTTTGCTAAACATGGAACGTCG 58.521 45.455 0.00 0.00 0.00 5.12
5636 8637 3.058224 AGCTTTGCTAAACATGGAACGTC 60.058 43.478 0.00 0.00 36.99 4.34
5637 8638 2.884639 AGCTTTGCTAAACATGGAACGT 59.115 40.909 0.00 0.00 36.99 3.99
5638 8639 3.189287 AGAGCTTTGCTAAACATGGAACG 59.811 43.478 0.00 0.00 39.88 3.95
5639 8640 4.216257 TGAGAGCTTTGCTAAACATGGAAC 59.784 41.667 0.00 0.00 39.88 3.62
5640 8641 4.216257 GTGAGAGCTTTGCTAAACATGGAA 59.784 41.667 0.00 0.00 39.88 3.53
5641 8642 3.753272 GTGAGAGCTTTGCTAAACATGGA 59.247 43.478 0.00 0.00 39.88 3.41
5642 8643 3.755378 AGTGAGAGCTTTGCTAAACATGG 59.245 43.478 0.00 0.00 39.88 3.66
5643 8644 4.453478 TGAGTGAGAGCTTTGCTAAACATG 59.547 41.667 0.00 0.00 39.88 3.21
5644 8645 4.645535 TGAGTGAGAGCTTTGCTAAACAT 58.354 39.130 0.00 0.00 39.88 2.71
5645 8646 4.071961 TGAGTGAGAGCTTTGCTAAACA 57.928 40.909 0.00 0.00 39.88 2.83
5646 8647 4.692625 TGATGAGTGAGAGCTTTGCTAAAC 59.307 41.667 0.00 0.00 39.88 2.01
5647 8648 4.898320 TGATGAGTGAGAGCTTTGCTAAA 58.102 39.130 0.00 0.00 39.88 1.85
5648 8649 4.541973 TGATGAGTGAGAGCTTTGCTAA 57.458 40.909 0.00 0.00 39.88 3.09
5649 8650 4.541973 TTGATGAGTGAGAGCTTTGCTA 57.458 40.909 0.00 0.00 39.88 3.49
5650 8651 3.413846 TTGATGAGTGAGAGCTTTGCT 57.586 42.857 0.00 0.00 43.88 3.91
5651 8652 3.065095 GGATTGATGAGTGAGAGCTTTGC 59.935 47.826 0.00 0.00 0.00 3.68
5652 8653 4.259356 TGGATTGATGAGTGAGAGCTTTG 58.741 43.478 0.00 0.00 0.00 2.77
5653 8654 4.019501 ACTGGATTGATGAGTGAGAGCTTT 60.020 41.667 0.00 0.00 0.00 3.51
5654 8655 3.518705 ACTGGATTGATGAGTGAGAGCTT 59.481 43.478 0.00 0.00 0.00 3.74
5655 8656 3.106054 ACTGGATTGATGAGTGAGAGCT 58.894 45.455 0.00 0.00 0.00 4.09
5656 8657 3.540314 ACTGGATTGATGAGTGAGAGC 57.460 47.619 0.00 0.00 0.00 4.09
5657 8658 5.588958 TGTACTGGATTGATGAGTGAGAG 57.411 43.478 0.00 0.00 0.00 3.20
5658 8659 6.550938 ATTGTACTGGATTGATGAGTGAGA 57.449 37.500 0.00 0.00 0.00 3.27
5659 8660 7.046652 AGAATTGTACTGGATTGATGAGTGAG 58.953 38.462 0.00 0.00 0.00 3.51
5660 8661 6.950842 AGAATTGTACTGGATTGATGAGTGA 58.049 36.000 0.00 0.00 0.00 3.41
5661 8662 7.043125 CGTAGAATTGTACTGGATTGATGAGTG 60.043 40.741 10.68 0.00 0.00 3.51
5662 8663 6.980978 CGTAGAATTGTACTGGATTGATGAGT 59.019 38.462 10.68 0.00 0.00 3.41
5663 8664 6.422100 CCGTAGAATTGTACTGGATTGATGAG 59.578 42.308 14.32 0.00 0.00 2.90
5664 8665 6.280643 CCGTAGAATTGTACTGGATTGATGA 58.719 40.000 14.32 0.00 0.00 2.92
5665 8666 5.466728 CCCGTAGAATTGTACTGGATTGATG 59.533 44.000 15.57 1.12 30.76 3.07
5666 8667 5.365605 TCCCGTAGAATTGTACTGGATTGAT 59.634 40.000 18.28 0.00 32.92 2.57
5667 8668 4.712829 TCCCGTAGAATTGTACTGGATTGA 59.287 41.667 18.28 8.50 32.92 2.57
5668 8669 4.809426 GTCCCGTAGAATTGTACTGGATTG 59.191 45.833 22.94 9.29 38.23 2.67
5669 8670 4.468510 TGTCCCGTAGAATTGTACTGGATT 59.531 41.667 22.94 0.00 38.23 3.01
5670 8671 4.028131 TGTCCCGTAGAATTGTACTGGAT 58.972 43.478 22.94 0.00 38.23 3.41
5671 8672 3.433343 TGTCCCGTAGAATTGTACTGGA 58.567 45.455 18.28 18.28 34.82 3.86
5672 8673 3.880047 TGTCCCGTAGAATTGTACTGG 57.120 47.619 14.76 14.76 0.00 4.00
5673 8674 5.416083 TCATTGTCCCGTAGAATTGTACTG 58.584 41.667 10.68 4.44 0.00 2.74
5674 8675 5.670792 TCATTGTCCCGTAGAATTGTACT 57.329 39.130 10.68 0.00 0.00 2.73
5675 8676 6.046593 TGATCATTGTCCCGTAGAATTGTAC 58.953 40.000 2.68 2.68 0.00 2.90
5676 8677 6.228616 TGATCATTGTCCCGTAGAATTGTA 57.771 37.500 0.00 0.00 0.00 2.41
5677 8678 5.097742 TGATCATTGTCCCGTAGAATTGT 57.902 39.130 0.00 0.00 0.00 2.71
5678 8679 4.024556 GCTGATCATTGTCCCGTAGAATTG 60.025 45.833 0.00 0.00 0.00 2.32
5679 8680 4.130118 GCTGATCATTGTCCCGTAGAATT 58.870 43.478 0.00 0.00 0.00 2.17
5680 8681 3.495100 GGCTGATCATTGTCCCGTAGAAT 60.495 47.826 0.00 0.00 0.00 2.40
5681 8682 2.158957 GGCTGATCATTGTCCCGTAGAA 60.159 50.000 0.00 0.00 0.00 2.10
5682 8683 1.412710 GGCTGATCATTGTCCCGTAGA 59.587 52.381 0.00 0.00 0.00 2.59
5683 8684 1.869754 CGGCTGATCATTGTCCCGTAG 60.870 57.143 0.00 0.00 0.00 3.51
5684 8685 0.104120 CGGCTGATCATTGTCCCGTA 59.896 55.000 0.00 0.00 0.00 4.02
5685 8686 1.153369 CGGCTGATCATTGTCCCGT 60.153 57.895 0.00 0.00 0.00 5.28
5686 8687 1.889105 CCGGCTGATCATTGTCCCG 60.889 63.158 0.00 4.06 35.74 5.14
5687 8688 1.526917 CCCGGCTGATCATTGTCCC 60.527 63.158 0.00 0.00 0.00 4.46
5688 8689 2.189499 GCCCGGCTGATCATTGTCC 61.189 63.158 0.71 0.00 0.00 4.02
5689 8690 2.537560 CGCCCGGCTGATCATTGTC 61.538 63.158 8.05 0.00 0.00 3.18
5690 8691 2.514592 CGCCCGGCTGATCATTGT 60.515 61.111 8.05 0.00 0.00 2.71
5691 8692 3.282157 CCGCCCGGCTGATCATTG 61.282 66.667 8.05 0.00 0.00 2.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.