Multiple sequence alignment - TraesCS7D01G161000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G161000 chr7D 100.000 4719 0 0 1 4719 111067894 111063176 0.000000e+00 8715.0
1 TraesCS7D01G161000 chr7B 89.548 2411 169 34 1849 4227 70526363 70524004 0.000000e+00 2979.0
2 TraesCS7D01G161000 chr7B 90.931 838 49 13 807 1630 70527424 70526600 0.000000e+00 1101.0
3 TraesCS7D01G161000 chr7B 81.714 700 110 8 44 729 70528145 70527450 6.850000e-158 568.0
4 TraesCS7D01G161000 chr7A 88.202 1746 96 59 3038 4719 116128891 116127192 0.000000e+00 1982.0
5 TraesCS7D01G161000 chr7A 88.872 665 42 14 813 1466 116130720 116130077 0.000000e+00 789.0
6 TraesCS7D01G161000 chr7A 85.294 170 18 4 299 462 116146588 116146420 8.120000e-38 169.0
7 TraesCS7D01G161000 chr7A 81.295 139 24 1 569 707 78497127 78496991 1.390000e-20 111.0
8 TraesCS7D01G161000 chr6D 82.840 169 25 2 389 554 5735568 5735735 1.060000e-31 148.0
9 TraesCS7D01G161000 chr3B 84.211 152 20 3 395 543 669750289 669750439 1.370000e-30 145.0
10 TraesCS7D01G161000 chr6B 82.738 168 22 3 389 553 707334487 707334650 4.920000e-30 143.0
11 TraesCS7D01G161000 chr5B 82.635 167 24 4 389 552 402762300 402762136 4.920000e-30 143.0
12 TraesCS7D01G161000 chr2D 82.738 168 22 4 389 553 569850962 569851125 4.920000e-30 143.0
13 TraesCS7D01G161000 chr2D 82.143 168 26 3 390 554 36885580 36885414 1.770000e-29 141.0
14 TraesCS7D01G161000 chr1D 82.424 165 25 2 391 552 461049531 461049694 1.770000e-29 141.0
15 TraesCS7D01G161000 chr3A 82.036 167 26 2 389 552 737602156 737602321 6.370000e-29 139.0
16 TraesCS7D01G161000 chr3A 81.884 138 22 2 569 706 309380566 309380432 3.860000e-21 113.0
17 TraesCS7D01G161000 chr5A 82.390 159 22 5 390 546 364961083 364960929 2.960000e-27 134.0
18 TraesCS7D01G161000 chr5A 80.851 141 25 1 567 707 321890936 321891074 4.990000e-20 110.0
19 TraesCS7D01G161000 chr2A 82.734 139 22 1 569 707 311056586 311056722 6.410000e-24 122.0
20 TraesCS7D01G161000 chr2B 81.818 143 24 2 574 715 576085168 576085309 8.300000e-23 119.0
21 TraesCS7D01G161000 chr4A 81.560 141 24 1 567 707 24916262 24916124 1.070000e-21 115.0
22 TraesCS7D01G161000 chr6A 81.159 138 24 1 570 707 64251836 64251971 4.990000e-20 110.0
23 TraesCS7D01G161000 chr6A 80.000 140 24 3 569 707 23592748 23592884 3.000000e-17 100.0
24 TraesCS7D01G161000 chr1A 79.433 141 25 3 568 707 117979096 117979233 3.890000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G161000 chr7D 111063176 111067894 4718 True 8715.000000 8715 100.000000 1 4719 1 chr7D.!!$R1 4718
1 TraesCS7D01G161000 chr7B 70524004 70528145 4141 True 1549.333333 2979 87.397667 44 4227 3 chr7B.!!$R1 4183
2 TraesCS7D01G161000 chr7A 116127192 116130720 3528 True 1385.500000 1982 88.537000 813 4719 2 chr7A.!!$R3 3906

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
478 488 0.106719 TGTTAAGGCCCCATAGCAGC 60.107 55.0 0.00 0.00 0.00 5.25 F
552 565 0.179094 AACCTGAAGACACGCGAACA 60.179 50.0 15.93 2.33 0.00 3.18 F
928 941 0.405198 ACCAACCATCCATCACAGCA 59.595 50.0 0.00 0.00 0.00 4.41 F
1466 1504 0.595825 GCTGCACCAAACAAGTCAGC 60.596 55.0 0.00 0.00 39.82 4.26 F
2704 2872 0.392461 GAAGCCGGCATCCTACAACA 60.392 55.0 31.54 0.00 0.00 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2282 2450 0.036010 AACCATGCCGACTGAGGAAG 60.036 55.0 0.00 0.0 0.00 3.46 R
2283 2451 0.036388 GAACCATGCCGACTGAGGAA 60.036 55.0 0.00 0.0 0.00 3.36 R
2286 2454 0.107508 ATGGAACCATGCCGACTGAG 60.108 55.0 5.47 0.0 35.03 3.35 R
2773 2941 0.179045 AGTGTCGCCTCTGCTTGTTT 60.179 50.0 0.00 0.0 34.43 2.83 R
4502 5281 0.038892 TTACAGGAGCCGTGTCGAAC 60.039 55.0 4.19 0.0 0.00 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 9.758651 ACGAATGTATATAACAATGTAGCTTCA 57.241 29.630 0.00 0.00 42.70 3.02
64 65 1.471676 GGGTGCATCCTAACTCTGTCG 60.472 57.143 9.39 0.00 36.25 4.35
69 70 2.675317 GCATCCTAACTCTGTCGTGCTT 60.675 50.000 0.00 0.00 0.00 3.91
75 76 0.747255 ACTCTGTCGTGCTTGTGTCT 59.253 50.000 0.00 0.00 0.00 3.41
76 77 1.954382 ACTCTGTCGTGCTTGTGTCTA 59.046 47.619 0.00 0.00 0.00 2.59
79 80 1.391485 CTGTCGTGCTTGTGTCTATGC 59.609 52.381 0.00 0.00 0.00 3.14
80 81 0.721718 GTCGTGCTTGTGTCTATGCC 59.278 55.000 0.00 0.00 0.00 4.40
88 89 2.687200 TGTCTATGCCGCCCACCT 60.687 61.111 0.00 0.00 0.00 4.00
89 90 2.203070 GTCTATGCCGCCCACCTG 60.203 66.667 0.00 0.00 0.00 4.00
117 118 1.744368 CAGGCGCTTGAGACATGCT 60.744 57.895 15.39 0.00 33.27 3.79
125 126 1.593469 CTTGAGACATGCTGCGAGATG 59.407 52.381 0.00 0.00 0.00 2.90
153 154 3.353836 CGGTCCGTGGTGGCTTTG 61.354 66.667 2.08 0.00 37.80 2.77
154 155 2.112297 GGTCCGTGGTGGCTTTGA 59.888 61.111 0.00 0.00 37.80 2.69
155 156 1.303317 GGTCCGTGGTGGCTTTGAT 60.303 57.895 0.00 0.00 37.80 2.57
156 157 1.586154 GGTCCGTGGTGGCTTTGATG 61.586 60.000 0.00 0.00 37.80 3.07
157 158 0.605319 GTCCGTGGTGGCTTTGATGA 60.605 55.000 0.00 0.00 37.80 2.92
158 159 0.321564 TCCGTGGTGGCTTTGATGAG 60.322 55.000 0.00 0.00 37.80 2.90
159 160 1.503542 CGTGGTGGCTTTGATGAGC 59.496 57.895 0.00 0.00 41.96 4.26
160 161 0.957395 CGTGGTGGCTTTGATGAGCT 60.957 55.000 0.00 0.00 42.32 4.09
162 163 1.068055 GTGGTGGCTTTGATGAGCTTG 60.068 52.381 0.00 0.00 42.32 4.01
164 165 0.529378 GTGGCTTTGATGAGCTTGGG 59.471 55.000 0.00 0.00 42.32 4.12
172 176 4.842531 TTGATGAGCTTGGGTATCTTCA 57.157 40.909 0.00 0.00 0.00 3.02
177 181 2.103263 GAGCTTGGGTATCTTCACGGAT 59.897 50.000 0.00 0.00 0.00 4.18
189 193 4.886579 TCTTCACGGATATCCATGATGTG 58.113 43.478 24.68 20.71 38.11 3.21
191 195 3.993920 TCACGGATATCCATGATGTGTG 58.006 45.455 16.42 15.14 32.70 3.82
196 200 3.409570 GATATCCATGATGTGTGCTGCT 58.590 45.455 0.00 0.00 0.00 4.24
200 204 2.026915 TCCATGATGTGTGCTGCTAGTT 60.027 45.455 0.00 0.00 0.00 2.24
204 208 0.321671 ATGTGTGCTGCTAGTTCGGT 59.678 50.000 0.00 0.00 0.00 4.69
226 230 1.215647 GTCAAGGCGACGAGGATGT 59.784 57.895 0.00 0.00 34.19 3.06
232 236 4.116961 CAAGGCGACGAGGATGTTATTTA 58.883 43.478 0.00 0.00 0.00 1.40
235 239 4.989168 AGGCGACGAGGATGTTATTTAATC 59.011 41.667 0.00 0.00 0.00 1.75
237 241 4.143389 GCGACGAGGATGTTATTTAATCGG 60.143 45.833 0.00 0.00 33.25 4.18
241 245 6.755206 ACGAGGATGTTATTTAATCGGATGA 58.245 36.000 0.00 0.00 33.25 2.92
246 250 6.659242 GGATGTTATTTAATCGGATGATGGGT 59.341 38.462 0.00 0.00 34.24 4.51
264 268 4.220724 TGGGTAAGAACGCTATGTCCTAT 58.779 43.478 0.00 0.00 39.24 2.57
265 269 4.038763 TGGGTAAGAACGCTATGTCCTATG 59.961 45.833 0.00 0.00 39.24 2.23
285 289 5.772825 ATGACACTGTTATTTGTGTGCTT 57.227 34.783 3.41 0.00 45.94 3.91
289 293 4.515191 ACACTGTTATTTGTGTGCTTCGAT 59.485 37.500 0.00 0.00 44.52 3.59
322 326 9.512588 ACTTGAATAAGATTGAAGAAGATGTGT 57.487 29.630 5.56 0.00 37.36 3.72
361 365 0.895530 TCAAGGAAGACCACTAGCGG 59.104 55.000 0.00 0.00 38.94 5.52
363 367 1.822990 CAAGGAAGACCACTAGCGGTA 59.177 52.381 1.45 0.00 40.22 4.02
364 368 1.765230 AGGAAGACCACTAGCGGTAG 58.235 55.000 19.71 19.71 40.22 3.18
365 369 1.284198 AGGAAGACCACTAGCGGTAGA 59.716 52.381 27.34 0.00 40.22 2.59
368 378 0.330604 AGACCACTAGCGGTAGACCA 59.669 55.000 27.34 0.00 40.22 4.02
373 383 2.293677 CCACTAGCGGTAGACCACTATG 59.706 54.545 27.34 12.96 30.96 2.23
404 414 4.796231 AGCCGCCGTCATCGTCAC 62.796 66.667 0.00 0.00 35.01 3.67
408 418 2.885861 GCCGTCATCGTCACTCCT 59.114 61.111 0.00 0.00 35.01 3.69
411 421 0.526211 CCGTCATCGTCACTCCTTCA 59.474 55.000 0.00 0.00 35.01 3.02
413 423 2.455032 CGTCATCGTCACTCCTTCATC 58.545 52.381 0.00 0.00 0.00 2.92
423 433 2.107141 CCTTCATCGGAGCCGGAC 59.893 66.667 5.05 0.00 40.25 4.79
428 438 0.251916 TCATCGGAGCCGGACAAAAT 59.748 50.000 5.05 0.00 40.25 1.82
431 441 2.476126 TCGGAGCCGGACAAAATTTA 57.524 45.000 5.05 0.00 40.25 1.40
434 444 4.515361 TCGGAGCCGGACAAAATTTATTA 58.485 39.130 5.05 0.00 40.25 0.98
441 451 9.485206 GAGCCGGACAAAATTTATTATAGTAGA 57.515 33.333 5.05 0.00 0.00 2.59
442 452 9.269453 AGCCGGACAAAATTTATTATAGTAGAC 57.731 33.333 5.05 0.00 0.00 2.59
461 471 2.035576 GACAGTAGGGAAGTTGTCGTGT 59.964 50.000 0.00 0.00 31.72 4.49
466 476 3.121738 AGGGAAGTTGTCGTGTTAAGG 57.878 47.619 0.00 0.00 0.00 2.69
469 479 1.534163 GAAGTTGTCGTGTTAAGGCCC 59.466 52.381 0.00 0.00 0.00 5.80
475 485 0.179468 TCGTGTTAAGGCCCCATAGC 59.821 55.000 0.00 0.00 0.00 2.97
476 486 0.107410 CGTGTTAAGGCCCCATAGCA 60.107 55.000 0.00 0.00 0.00 3.49
477 487 1.680338 GTGTTAAGGCCCCATAGCAG 58.320 55.000 0.00 0.00 0.00 4.24
478 488 0.106719 TGTTAAGGCCCCATAGCAGC 60.107 55.000 0.00 0.00 0.00 5.25
479 489 0.183731 GTTAAGGCCCCATAGCAGCT 59.816 55.000 0.00 0.00 0.00 4.24
486 499 1.378911 CCCATAGCAGCTGCACCAA 60.379 57.895 38.24 21.50 45.16 3.67
491 504 0.953727 TAGCAGCTGCACCAAAACAG 59.046 50.000 38.24 0.00 45.16 3.16
499 512 0.459411 GCACCAAAACAGCAACCGTT 60.459 50.000 0.00 0.00 0.00 4.44
513 526 0.670546 ACCGTTGCCGATGAAGAGTG 60.671 55.000 0.00 0.00 35.63 3.51
517 530 2.125512 GCCGATGAAGAGTGGCGT 60.126 61.111 0.00 0.00 37.81 5.68
518 531 1.141019 GCCGATGAAGAGTGGCGTA 59.859 57.895 0.00 0.00 37.81 4.42
522 535 2.552743 CCGATGAAGAGTGGCGTAGATA 59.447 50.000 0.00 0.00 0.00 1.98
523 536 3.365465 CCGATGAAGAGTGGCGTAGATAG 60.365 52.174 0.00 0.00 0.00 2.08
547 560 1.079503 GATCCAACCTGAAGACACGC 58.920 55.000 0.00 0.00 0.00 5.34
552 565 0.179094 AACCTGAAGACACGCGAACA 60.179 50.000 15.93 2.33 0.00 3.18
554 567 0.439985 CCTGAAGACACGCGAACATG 59.560 55.000 15.93 2.09 0.00 3.21
555 568 1.418373 CTGAAGACACGCGAACATGA 58.582 50.000 15.93 0.00 0.00 3.07
557 570 1.525197 TGAAGACACGCGAACATGAAC 59.475 47.619 15.93 0.75 0.00 3.18
564 577 4.698496 CGAACATGAACGCACGAC 57.302 55.556 0.00 0.00 0.00 4.34
618 631 1.469079 GGGCGGATCCAACAAATTTCG 60.469 52.381 13.41 0.00 36.21 3.46
626 639 5.336372 GGATCCAACAAATTTCGACCATCAA 60.336 40.000 6.95 0.00 0.00 2.57
629 642 4.447389 CCAACAAATTTCGACCATCAAACC 59.553 41.667 0.00 0.00 0.00 3.27
639 652 3.691118 CGACCATCAAACCATGTCAATCT 59.309 43.478 0.00 0.00 0.00 2.40
642 655 6.038603 CGACCATCAAACCATGTCAATCTAAT 59.961 38.462 0.00 0.00 0.00 1.73
643 656 7.226523 CGACCATCAAACCATGTCAATCTAATA 59.773 37.037 0.00 0.00 0.00 0.98
645 658 8.686334 ACCATCAAACCATGTCAATCTAATAAC 58.314 33.333 0.00 0.00 0.00 1.89
647 660 7.639113 TCAAACCATGTCAATCTAATAACCC 57.361 36.000 0.00 0.00 0.00 4.11
650 663 7.587037 AACCATGTCAATCTAATAACCCATG 57.413 36.000 0.00 0.00 0.00 3.66
656 669 6.318648 TGTCAATCTAATAACCCATGTTGCTC 59.681 38.462 0.00 0.00 35.87 4.26
657 670 6.543831 GTCAATCTAATAACCCATGTTGCTCT 59.456 38.462 0.00 0.00 35.87 4.09
662 675 7.801104 TCTAATAACCCATGTTGCTCTAATGA 58.199 34.615 0.00 0.00 35.87 2.57
663 676 6.699575 AATAACCCATGTTGCTCTAATGAC 57.300 37.500 0.00 0.00 35.87 3.06
668 681 2.010145 TGTTGCTCTAATGACGAGGC 57.990 50.000 0.00 0.00 0.00 4.70
669 682 1.275010 TGTTGCTCTAATGACGAGGCA 59.725 47.619 0.00 0.00 0.00 4.75
671 684 2.229675 TGCTCTAATGACGAGGCATG 57.770 50.000 0.00 0.00 0.00 4.06
674 687 2.541762 GCTCTAATGACGAGGCATGAAC 59.458 50.000 0.00 0.00 0.00 3.18
682 695 4.068599 TGACGAGGCATGAACATGTTTAA 58.931 39.130 13.36 4.93 40.80 1.52
684 697 3.120338 ACGAGGCATGAACATGTTTAACG 60.120 43.478 13.36 13.26 40.80 3.18
725 738 7.333528 TCAAATTTCAATGCCTACACTATCC 57.666 36.000 0.00 0.00 0.00 2.59
726 739 6.889177 TCAAATTTCAATGCCTACACTATCCA 59.111 34.615 0.00 0.00 0.00 3.41
727 740 6.699575 AATTTCAATGCCTACACTATCCAC 57.300 37.500 0.00 0.00 0.00 4.02
728 741 3.452755 TCAATGCCTACACTATCCACG 57.547 47.619 0.00 0.00 0.00 4.94
729 742 3.028130 TCAATGCCTACACTATCCACGA 58.972 45.455 0.00 0.00 0.00 4.35
730 743 3.449377 TCAATGCCTACACTATCCACGAA 59.551 43.478 0.00 0.00 0.00 3.85
731 744 4.081365 TCAATGCCTACACTATCCACGAAA 60.081 41.667 0.00 0.00 0.00 3.46
733 746 4.481368 TGCCTACACTATCCACGAAATT 57.519 40.909 0.00 0.00 0.00 1.82
736 749 5.353123 TGCCTACACTATCCACGAAATTTTC 59.647 40.000 0.00 0.00 0.00 2.29
737 750 5.353123 GCCTACACTATCCACGAAATTTTCA 59.647 40.000 9.66 0.00 0.00 2.69
738 751 6.674760 GCCTACACTATCCACGAAATTTTCAC 60.675 42.308 9.66 0.00 0.00 3.18
739 752 6.594159 CCTACACTATCCACGAAATTTTCACT 59.406 38.462 9.66 0.00 0.00 3.41
740 753 6.481954 ACACTATCCACGAAATTTTCACTC 57.518 37.500 9.66 0.00 0.00 3.51
741 754 6.231211 ACACTATCCACGAAATTTTCACTCT 58.769 36.000 9.66 0.00 0.00 3.24
742 755 6.369065 ACACTATCCACGAAATTTTCACTCTC 59.631 38.462 9.66 0.00 0.00 3.20
743 756 6.368791 CACTATCCACGAAATTTTCACTCTCA 59.631 38.462 9.66 0.00 0.00 3.27
744 757 7.065085 CACTATCCACGAAATTTTCACTCTCAT 59.935 37.037 9.66 0.00 0.00 2.90
745 758 8.258007 ACTATCCACGAAATTTTCACTCTCATA 58.742 33.333 9.66 0.00 0.00 2.15
746 759 9.265901 CTATCCACGAAATTTTCACTCTCATAT 57.734 33.333 9.66 0.00 0.00 1.78
747 760 7.539712 TCCACGAAATTTTCACTCTCATATC 57.460 36.000 9.66 0.00 0.00 1.63
748 761 6.255670 TCCACGAAATTTTCACTCTCATATCG 59.744 38.462 9.66 0.00 0.00 2.92
749 762 6.414079 CACGAAATTTTCACTCTCATATCGG 58.586 40.000 9.66 0.00 0.00 4.18
750 763 5.523916 ACGAAATTTTCACTCTCATATCGGG 59.476 40.000 9.66 0.00 0.00 5.14
751 764 5.523916 CGAAATTTTCACTCTCATATCGGGT 59.476 40.000 9.66 0.00 0.00 5.28
752 765 6.700081 CGAAATTTTCACTCTCATATCGGGTA 59.300 38.462 9.66 0.00 0.00 3.69
753 766 7.306632 CGAAATTTTCACTCTCATATCGGGTAC 60.307 40.741 9.66 0.00 0.00 3.34
754 767 5.925506 TTTTCACTCTCATATCGGGTACA 57.074 39.130 0.00 0.00 0.00 2.90
755 768 4.913335 TTCACTCTCATATCGGGTACAC 57.087 45.455 0.00 0.00 0.00 2.90
756 769 3.893521 TCACTCTCATATCGGGTACACA 58.106 45.455 0.00 0.00 0.00 3.72
757 770 4.470602 TCACTCTCATATCGGGTACACAT 58.529 43.478 0.00 0.00 0.00 3.21
758 771 4.893524 TCACTCTCATATCGGGTACACATT 59.106 41.667 0.00 0.00 0.00 2.71
759 772 5.362717 TCACTCTCATATCGGGTACACATTT 59.637 40.000 0.00 0.00 0.00 2.32
760 773 6.548251 TCACTCTCATATCGGGTACACATTTA 59.452 38.462 0.00 0.00 0.00 1.40
761 774 6.641314 CACTCTCATATCGGGTACACATTTAC 59.359 42.308 0.00 0.00 0.00 2.01
762 775 6.550108 ACTCTCATATCGGGTACACATTTACT 59.450 38.462 0.00 0.00 0.00 2.24
763 776 7.722728 ACTCTCATATCGGGTACACATTTACTA 59.277 37.037 0.00 0.00 0.00 1.82
811 824 8.607441 AAAGTTCACTTTTTCTTTTTGAAGCT 57.393 26.923 0.00 0.00 43.07 3.74
905 918 0.972983 ATCCTGATATCCCCTCGCCG 60.973 60.000 0.00 0.00 0.00 6.46
927 940 1.474077 GAACCAACCATCCATCACAGC 59.526 52.381 0.00 0.00 0.00 4.40
928 941 0.405198 ACCAACCATCCATCACAGCA 59.595 50.000 0.00 0.00 0.00 4.41
929 942 0.813184 CCAACCATCCATCACAGCAC 59.187 55.000 0.00 0.00 0.00 4.40
930 943 1.536940 CAACCATCCATCACAGCACA 58.463 50.000 0.00 0.00 0.00 4.57
931 944 1.471287 CAACCATCCATCACAGCACAG 59.529 52.381 0.00 0.00 0.00 3.66
1072 1094 4.851214 GCGCCTCCTCCTCCTCCT 62.851 72.222 0.00 0.00 0.00 3.69
1074 1096 2.123033 GCCTCCTCCTCCTCCTCC 60.123 72.222 0.00 0.00 0.00 4.30
1229 1258 2.111043 TATGCAAGCCGGCTAGCC 59.889 61.111 33.07 24.75 34.04 3.93
1235 1264 3.157217 AAGCCGGCTAGCCATCTCG 62.157 63.158 33.07 17.90 35.37 4.04
1239 1268 4.292178 GGCTAGCCATCTCGCGCT 62.292 66.667 29.33 0.00 39.17 5.92
1240 1269 2.732843 GCTAGCCATCTCGCGCTC 60.733 66.667 5.56 0.00 36.53 5.03
1241 1270 3.038280 CTAGCCATCTCGCGCTCT 58.962 61.111 5.56 0.00 36.53 4.09
1242 1271 1.371512 CTAGCCATCTCGCGCTCTG 60.372 63.158 5.56 0.00 36.53 3.35
1243 1272 2.745906 CTAGCCATCTCGCGCTCTGG 62.746 65.000 5.56 8.83 36.53 3.86
1244 1273 4.212913 GCCATCTCGCGCTCTGGA 62.213 66.667 20.25 6.47 0.00 3.86
1275 1304 2.095843 GAATTCGTGCGCGGTGAC 59.904 61.111 21.04 5.98 38.89 3.67
1302 1336 1.403679 CTGAAGTGCGTTGGGTTTTGA 59.596 47.619 0.00 0.00 0.00 2.69
1355 1393 2.904866 GTGCCGCCCAACTTCACA 60.905 61.111 0.00 0.00 0.00 3.58
1460 1498 2.795110 GCCAGGCTGCACCAAACAA 61.795 57.895 9.56 0.00 43.14 2.83
1466 1504 0.595825 GCTGCACCAAACAAGTCAGC 60.596 55.000 0.00 0.00 39.82 4.26
1473 1511 4.791411 GCACCAAACAAGTCAGCGATTTTA 60.791 41.667 0.00 0.00 0.00 1.52
1478 1516 8.138712 ACCAAACAAGTCAGCGATTTTATTTTA 58.861 29.630 0.00 0.00 0.00 1.52
1479 1517 9.139174 CCAAACAAGTCAGCGATTTTATTTTAT 57.861 29.630 0.00 0.00 0.00 1.40
1486 1524 9.221775 AGTCAGCGATTTTATTTTATTTTAGCG 57.778 29.630 0.00 0.00 0.00 4.26
1491 1529 7.991046 GCGATTTTATTTTATTTTAGCGACAGC 59.009 33.333 0.00 0.00 45.58 4.40
1528 1566 7.680442 TCAATTAATCAGTCCATCGACAAAA 57.320 32.000 0.00 0.00 41.87 2.44
1547 1585 8.963130 CGACAAAATAAGCAGTTTACAAAATGA 58.037 29.630 6.34 0.00 36.17 2.57
1583 1621 1.794701 CATTCGTCGGCATGACTATGG 59.205 52.381 0.00 0.00 45.87 2.74
1586 1624 1.269723 TCGTCGGCATGACTATGGATC 59.730 52.381 0.00 0.00 45.87 3.36
1672 1823 2.481289 AGGCCTTAGAAACAGAGTGC 57.519 50.000 0.00 0.00 0.00 4.40
1677 1828 3.123116 GCCTTAGAAACAGAGTGCGTAAC 59.877 47.826 0.00 0.00 0.00 2.50
1678 1829 4.304110 CCTTAGAAACAGAGTGCGTAACA 58.696 43.478 0.00 0.00 0.00 2.41
1679 1830 4.748102 CCTTAGAAACAGAGTGCGTAACAA 59.252 41.667 0.00 0.00 0.00 2.83
1681 1832 6.073222 CCTTAGAAACAGAGTGCGTAACAAAT 60.073 38.462 0.00 0.00 0.00 2.32
1682 1833 5.751243 AGAAACAGAGTGCGTAACAAATT 57.249 34.783 0.00 0.00 0.00 1.82
1683 1834 6.131544 AGAAACAGAGTGCGTAACAAATTT 57.868 33.333 0.00 0.00 0.00 1.82
1684 1835 6.199393 AGAAACAGAGTGCGTAACAAATTTC 58.801 36.000 0.00 0.00 0.00 2.17
1686 1837 5.095691 ACAGAGTGCGTAACAAATTTCAG 57.904 39.130 0.00 0.00 0.00 3.02
1687 1838 4.574828 ACAGAGTGCGTAACAAATTTCAGT 59.425 37.500 0.00 0.00 0.00 3.41
1688 1839 5.140177 CAGAGTGCGTAACAAATTTCAGTC 58.860 41.667 0.00 0.00 0.00 3.51
1709 1875 7.120579 TCAGTCGTCCAATAATTATTTGTGCTT 59.879 33.333 8.01 0.00 0.00 3.91
1732 1898 2.170012 ACGGATTTGGGGCTCTAGTA 57.830 50.000 0.00 0.00 0.00 1.82
1734 1900 2.040178 CGGATTTGGGGCTCTAGTACT 58.960 52.381 0.00 0.00 0.00 2.73
1749 1915 7.063544 GGCTCTAGTACTGTTTAAATCACACTG 59.936 40.741 5.39 0.00 0.00 3.66
1756 1922 9.037737 GTACTGTTTAAATCACACTGTCAAGTA 57.962 33.333 0.00 0.00 33.79 2.24
1757 1923 8.677148 ACTGTTTAAATCACACTGTCAAGTAT 57.323 30.769 0.00 0.00 33.79 2.12
1769 1935 2.000447 GTCAAGTATCAAGGGCGTGTC 59.000 52.381 0.00 0.00 0.00 3.67
1779 1945 3.676216 GGCGTGTCCCCGAAAAAT 58.324 55.556 0.00 0.00 0.00 1.82
1791 1957 8.895737 GTGTCCCCGAAAAATATAAGTATCAAA 58.104 33.333 0.00 0.00 0.00 2.69
1792 1958 9.116067 TGTCCCCGAAAAATATAAGTATCAAAG 57.884 33.333 0.00 0.00 0.00 2.77
1793 1959 9.333724 GTCCCCGAAAAATATAAGTATCAAAGA 57.666 33.333 0.00 0.00 0.00 2.52
1794 1960 9.908747 TCCCCGAAAAATATAAGTATCAAAGAA 57.091 29.630 0.00 0.00 0.00 2.52
1807 1973 8.862325 AAGTATCAAAGAAATACCATGTGACA 57.138 30.769 0.00 0.00 31.26 3.58
1808 1974 8.268850 AGTATCAAAGAAATACCATGTGACAC 57.731 34.615 0.00 0.00 31.26 3.67
1809 1975 7.882791 AGTATCAAAGAAATACCATGTGACACA 59.117 33.333 11.41 11.41 31.26 3.72
1810 1976 7.707624 ATCAAAGAAATACCATGTGACACAT 57.292 32.000 15.48 15.48 39.91 3.21
1811 1977 8.806429 ATCAAAGAAATACCATGTGACACATA 57.194 30.769 20.42 6.37 36.53 2.29
1812 1978 8.806429 TCAAAGAAATACCATGTGACACATAT 57.194 30.769 20.42 13.96 36.53 1.78
1813 1979 8.676401 TCAAAGAAATACCATGTGACACATATG 58.324 33.333 20.42 16.22 36.53 1.78
1823 1989 8.087982 CCATGTGACACATATGGTAAGTAATC 57.912 38.462 20.42 0.00 44.49 1.75
1824 1990 7.173218 CCATGTGACACATATGGTAAGTAATCC 59.827 40.741 20.42 0.00 44.49 3.01
1825 1991 7.189079 TGTGACACATATGGTAAGTAATCCA 57.811 36.000 3.56 0.00 38.14 3.41
1826 1992 7.625469 TGTGACACATATGGTAAGTAATCCAA 58.375 34.615 3.56 0.00 37.27 3.53
1827 1993 8.103935 TGTGACACATATGGTAAGTAATCCAAA 58.896 33.333 3.56 0.00 37.27 3.28
1828 1994 8.395633 GTGACACATATGGTAAGTAATCCAAAC 58.604 37.037 7.80 0.00 37.27 2.93
1829 1995 7.554835 TGACACATATGGTAAGTAATCCAAACC 59.445 37.037 7.80 0.00 37.27 3.27
1830 1996 7.406916 ACACATATGGTAAGTAATCCAAACCA 58.593 34.615 7.80 0.00 43.93 3.67
1832 1998 8.912988 CACATATGGTAAGTAATCCAAACCATT 58.087 33.333 10.30 0.00 46.28 3.16
1833 1999 9.131791 ACATATGGTAAGTAATCCAAACCATTC 57.868 33.333 10.30 0.00 46.28 2.67
1834 2000 9.130661 CATATGGTAAGTAATCCAAACCATTCA 57.869 33.333 10.30 0.00 46.28 2.57
1835 2001 9.707957 ATATGGTAAGTAATCCAAACCATTCAA 57.292 29.630 10.30 0.00 46.28 2.69
1836 2002 7.841282 TGGTAAGTAATCCAAACCATTCAAA 57.159 32.000 0.00 0.00 35.34 2.69
1837 2003 8.251383 TGGTAAGTAATCCAAACCATTCAAAA 57.749 30.769 0.00 0.00 35.34 2.44
1838 2004 8.705594 TGGTAAGTAATCCAAACCATTCAAAAA 58.294 29.630 0.00 0.00 35.34 1.94
1839 2005 9.203421 GGTAAGTAATCCAAACCATTCAAAAAG 57.797 33.333 0.00 0.00 0.00 2.27
1840 2006 9.974980 GTAAGTAATCCAAACCATTCAAAAAGA 57.025 29.630 0.00 0.00 0.00 2.52
1842 2008 9.898152 AAGTAATCCAAACCATTCAAAAAGAAA 57.102 25.926 0.00 0.00 40.22 2.52
1843 2009 9.898152 AGTAATCCAAACCATTCAAAAAGAAAA 57.102 25.926 0.00 0.00 40.22 2.29
1846 2012 8.667076 ATCCAAACCATTCAAAAAGAAAAGAG 57.333 30.769 0.00 0.00 40.22 2.85
1847 2013 6.538381 TCCAAACCATTCAAAAAGAAAAGAGC 59.462 34.615 0.00 0.00 40.22 4.09
1853 2019 6.363357 CCATTCAAAAAGAAAAGAGCGTAAGG 59.637 38.462 0.00 0.00 40.22 2.69
1888 2054 2.024414 GACTTGGTTGACAGGCAGTTT 58.976 47.619 0.00 0.00 0.00 2.66
1939 2107 2.158505 AGGGCTATGGCTTAGTCGACTA 60.159 50.000 21.25 21.25 33.01 2.59
2066 2234 5.245531 AGTTGGAAATAGTCATTTCTCGCA 58.754 37.500 9.31 0.00 46.26 5.10
2126 2294 2.550855 CCACTAGGCAACAGACACATGT 60.551 50.000 0.00 0.00 41.41 3.21
2165 2333 3.954258 AGGTGAGCTAGCAAACTGTTTTT 59.046 39.130 18.83 0.00 0.00 1.94
2173 2341 7.940850 AGCTAGCAAACTGTTTTTCTCAAATA 58.059 30.769 18.83 0.00 0.00 1.40
2174 2342 8.078596 AGCTAGCAAACTGTTTTTCTCAAATAG 58.921 33.333 18.83 0.24 0.00 1.73
2209 2377 6.143915 TCTACCTAACTATTGCCTCCTTCAT 58.856 40.000 0.00 0.00 0.00 2.57
2265 2433 2.263077 CAGTTGCCTTGCTACTAGACG 58.737 52.381 0.00 0.00 42.01 4.18
2286 2454 2.238521 TGGATGTTGCCACTTTCTTCC 58.761 47.619 0.00 0.00 31.66 3.46
2288 2456 2.489722 GGATGTTGCCACTTTCTTCCTC 59.510 50.000 0.00 0.00 0.00 3.71
2290 2458 2.575532 TGTTGCCACTTTCTTCCTCAG 58.424 47.619 0.00 0.00 0.00 3.35
2291 2459 2.092429 TGTTGCCACTTTCTTCCTCAGT 60.092 45.455 0.00 0.00 0.00 3.41
2292 2460 2.550180 GTTGCCACTTTCTTCCTCAGTC 59.450 50.000 0.00 0.00 0.00 3.51
2293 2461 1.270305 TGCCACTTTCTTCCTCAGTCG 60.270 52.381 0.00 0.00 0.00 4.18
2314 2482 3.631250 GGCATGGTTCCATCCTTTCTAA 58.369 45.455 0.86 0.00 0.00 2.10
2323 2491 3.769844 TCCATCCTTTCTAAGCTCTTCGT 59.230 43.478 0.00 0.00 0.00 3.85
2340 2508 1.002011 GTCTTCCTCCTTGCCCACC 60.002 63.158 0.00 0.00 0.00 4.61
2366 2534 3.322466 CCCTCCACCTCACGCCTT 61.322 66.667 0.00 0.00 0.00 4.35
2391 2559 4.235372 TCTCTTTCTCTCCTTTTCCACCT 58.765 43.478 0.00 0.00 0.00 4.00
2396 2564 3.327439 TCTCTCCTTTTCCACCTTCCTT 58.673 45.455 0.00 0.00 0.00 3.36
2397 2565 3.073062 TCTCTCCTTTTCCACCTTCCTTG 59.927 47.826 0.00 0.00 0.00 3.61
2414 2582 2.607282 CCTTGTATAAGTCGCCGCTAGG 60.607 54.545 0.00 0.00 34.70 3.02
2426 2594 1.726853 CCGCTAGGTCTGTTCCTTTG 58.273 55.000 0.00 0.00 38.86 2.77
2447 2615 1.574428 GCATTAAGCGGCGTATGGG 59.426 57.895 9.37 0.00 0.00 4.00
2463 2631 4.018409 GGGCTGAAATGTCCCACC 57.982 61.111 0.00 0.00 39.82 4.61
2465 2633 0.541764 GGGCTGAAATGTCCCACCAA 60.542 55.000 0.00 0.00 39.82 3.67
2503 2671 2.708386 GGAGGAGTCAATATCGTCCG 57.292 55.000 0.00 0.00 40.69 4.79
2539 2707 7.801315 CGTCACCATCTTAATTTTCTTTTCGAA 59.199 33.333 0.00 0.00 0.00 3.71
2567 2735 5.348997 CCGACAAGAACTCTACCTTTTCATC 59.651 44.000 0.00 0.00 0.00 2.92
2585 2753 5.287170 TCATCAAGAAGAACAAGAATGCG 57.713 39.130 0.00 0.00 0.00 4.73
2586 2754 3.542712 TCAAGAAGAACAAGAATGCGC 57.457 42.857 0.00 0.00 0.00 6.09
2603 2771 1.804748 GCGCCGGATAATAAGGGAAAG 59.195 52.381 5.05 0.00 0.00 2.62
2612 2780 6.544564 CGGATAATAAGGGAAAGTAGCCAAAA 59.455 38.462 0.00 0.00 0.00 2.44
2613 2781 7.468220 CGGATAATAAGGGAAAGTAGCCAAAAC 60.468 40.741 0.00 0.00 0.00 2.43
2616 2784 1.422402 AGGGAAAGTAGCCAAAACCGA 59.578 47.619 0.00 0.00 0.00 4.69
2635 2803 3.059868 CCGATAATTATGCACACACCGAC 60.060 47.826 1.78 0.00 0.00 4.79
2637 2805 1.083489 AATTATGCACACACCGACCG 58.917 50.000 0.00 0.00 0.00 4.79
2684 2852 0.803380 GATGCGCCATTTGAGCAACC 60.803 55.000 4.18 0.00 44.51 3.77
2688 2856 0.454957 CGCCATTTGAGCAACCGAAG 60.455 55.000 0.00 0.00 0.00 3.79
2704 2872 0.392461 GAAGCCGGCATCCTACAACA 60.392 55.000 31.54 0.00 0.00 3.33
2706 2874 0.392998 AGCCGGCATCCTACAACAAG 60.393 55.000 31.54 0.00 0.00 3.16
2720 2888 1.660607 CAACAAGATCCGACATCCACG 59.339 52.381 0.00 0.00 0.00 4.94
2722 2890 1.757118 ACAAGATCCGACATCCACGAT 59.243 47.619 0.00 0.00 0.00 3.73
2731 2899 2.120909 CATCCACGATGGCCCCAAC 61.121 63.158 0.00 0.00 37.47 3.77
2733 2901 2.148723 ATCCACGATGGCCCCAACAA 62.149 55.000 0.00 0.00 37.47 2.83
2734 2902 2.342650 CCACGATGGCCCCAACAAG 61.343 63.158 0.00 0.00 0.00 3.16
2735 2903 1.303236 CACGATGGCCCCAACAAGA 60.303 57.895 0.00 0.00 0.00 3.02
2737 2905 1.002134 CGATGGCCCCAACAAGACT 60.002 57.895 0.00 0.00 0.00 3.24
2738 2906 1.308069 CGATGGCCCCAACAAGACTG 61.308 60.000 0.00 0.00 0.00 3.51
2739 2907 1.598701 GATGGCCCCAACAAGACTGC 61.599 60.000 0.00 0.00 0.00 4.40
2740 2908 2.203480 GGCCCCAACAAGACTGCA 60.203 61.111 0.00 0.00 0.00 4.41
2748 2916 3.557898 CCCAACAAGACTGCACACTAGAT 60.558 47.826 0.00 0.00 0.00 1.98
2773 2941 4.191544 GTCGATGAATCAATCACCCAAGA 58.808 43.478 0.00 0.00 41.93 3.02
2780 2948 4.525912 ATCAATCACCCAAGAAACAAGC 57.474 40.909 0.00 0.00 0.00 4.01
2796 2964 1.135915 CAAGCAGAGGCGACACTCTAT 59.864 52.381 0.00 0.00 45.71 1.98
2798 2966 2.226330 AGCAGAGGCGACACTCTATAG 58.774 52.381 0.00 0.00 45.71 1.31
2807 2975 2.539142 CGACACTCTATAGCACCACGAC 60.539 54.545 0.00 0.00 0.00 4.34
2828 2996 1.082679 GTTTTCGTAGCCTCCGCTCC 61.083 60.000 0.00 0.00 43.95 4.70
2829 2997 2.552585 TTTTCGTAGCCTCCGCTCCG 62.553 60.000 0.00 0.00 43.95 4.63
2832 3000 2.829458 GTAGCCTCCGCTCCGACT 60.829 66.667 0.00 0.00 43.95 4.18
2842 3010 1.411394 CGCTCCGACTTACAAACGAA 58.589 50.000 0.00 0.00 0.00 3.85
2846 3014 1.788308 TCCGACTTACAAACGAAAGCG 59.212 47.619 0.00 0.00 44.79 4.68
2857 3025 0.169230 ACGAAAGCGCAAACACACAA 59.831 45.000 11.47 0.00 42.48 3.33
2858 3026 0.839477 CGAAAGCGCAAACACACAAG 59.161 50.000 11.47 0.00 0.00 3.16
2863 3031 1.063327 CGCAAACACACAAGCCGAA 59.937 52.632 0.00 0.00 0.00 4.30
2866 3034 0.591236 CAAACACACAAGCCGAACCG 60.591 55.000 0.00 0.00 0.00 4.44
2867 3035 0.745128 AAACACACAAGCCGAACCGA 60.745 50.000 0.00 0.00 0.00 4.69
2868 3036 1.157870 AACACACAAGCCGAACCGAG 61.158 55.000 0.00 0.00 0.00 4.63
2882 3051 4.101790 CGAGGCCGCGCAACAAAT 62.102 61.111 17.99 0.00 0.00 2.32
2893 3062 0.675633 GCAACAAATGAGCCACTGGT 59.324 50.000 0.00 0.00 0.00 4.00
2897 3066 0.523072 CAAATGAGCCACTGGTTCCG 59.477 55.000 9.29 0.00 31.76 4.30
2900 3069 1.480212 ATGAGCCACTGGTTCCGTGA 61.480 55.000 9.29 0.00 31.76 4.35
2950 3247 3.214694 TCCCCTCCTTTACATTCCTCA 57.785 47.619 0.00 0.00 0.00 3.86
2966 3263 0.324943 CTCATGTTCCTCCGGTTGGT 59.675 55.000 14.11 0.00 36.30 3.67
2968 3265 0.881118 CATGTTCCTCCGGTTGGTTG 59.119 55.000 14.11 6.54 36.30 3.77
2970 3267 2.281208 TTCCTCCGGTTGGTTGCG 60.281 61.111 14.11 0.00 36.30 4.85
2989 3286 1.639475 CGTCGTGCAATATCGATCTCG 59.361 52.381 0.00 0.23 38.32 4.04
2993 3695 1.008875 TGCAATATCGATCTCGGCGC 61.009 55.000 0.00 0.00 40.29 6.53
3003 3705 1.148157 ATCTCGGCGCAGATTGTTCG 61.148 55.000 11.52 0.76 27.71 3.95
3036 3738 0.379669 CCTTGTGCGGCAGATCATTC 59.620 55.000 1.18 0.00 0.00 2.67
3037 3739 1.089112 CTTGTGCGGCAGATCATTCA 58.911 50.000 1.18 0.00 0.00 2.57
3038 3740 1.674441 CTTGTGCGGCAGATCATTCAT 59.326 47.619 1.18 0.00 0.00 2.57
3039 3741 1.753930 TGTGCGGCAGATCATTCATT 58.246 45.000 1.18 0.00 0.00 2.57
3060 3762 6.998074 TCATTTATATTTGTTGGATCGAGCCT 59.002 34.615 22.18 1.12 0.00 4.58
3063 3765 1.808411 TTTGTTGGATCGAGCCTGAC 58.192 50.000 22.18 18.86 0.00 3.51
3066 3768 2.107366 TGTTGGATCGAGCCTGACATA 58.893 47.619 22.18 0.00 0.00 2.29
3080 3789 9.764870 CGAGCCTGACATAATATGATTTAAATG 57.235 33.333 5.17 0.00 0.00 2.32
3156 3875 3.002791 TCATTCGCCAGAAGACATTCAC 58.997 45.455 0.00 0.00 40.09 3.18
3169 3888 3.648067 AGACATTCACTCCTCTTGGTTCA 59.352 43.478 0.00 0.00 34.23 3.18
3277 3996 0.457851 CCACTCCACGGCAACAAAAA 59.542 50.000 0.00 0.00 0.00 1.94
3316 4035 1.359848 CGTCCCAAGAAATCACCGAG 58.640 55.000 0.00 0.00 0.00 4.63
3823 4548 7.687941 AAAAAGGTGACACATATTAGACCAG 57.312 36.000 8.08 0.00 0.00 4.00
3827 4552 4.503910 GTGACACATATTAGACCAGCACA 58.496 43.478 0.00 0.00 0.00 4.57
3832 4557 5.125356 CACATATTAGACCAGCACATTGGA 58.875 41.667 0.00 0.00 40.87 3.53
3900 4657 3.348647 TTGGATCCAATTCGAAGCTGA 57.651 42.857 23.63 0.00 0.00 4.26
3901 4658 3.348647 TGGATCCAATTCGAAGCTGAA 57.651 42.857 13.46 0.00 0.00 3.02
3902 4659 3.009723 TGGATCCAATTCGAAGCTGAAC 58.990 45.455 13.46 0.00 0.00 3.18
3903 4660 2.030946 GGATCCAATTCGAAGCTGAACG 59.969 50.000 6.95 0.00 0.00 3.95
3904 4661 2.163818 TCCAATTCGAAGCTGAACGT 57.836 45.000 3.35 0.00 0.00 3.99
3905 4662 1.798223 TCCAATTCGAAGCTGAACGTG 59.202 47.619 3.35 1.74 0.00 4.49
3906 4663 1.531149 CCAATTCGAAGCTGAACGTGT 59.469 47.619 3.35 0.00 0.00 4.49
3907 4664 2.563976 CAATTCGAAGCTGAACGTGTG 58.436 47.619 3.35 0.00 0.00 3.82
3908 4665 2.148916 ATTCGAAGCTGAACGTGTGA 57.851 45.000 3.35 0.00 0.00 3.58
3909 4666 2.148916 TTCGAAGCTGAACGTGTGAT 57.851 45.000 0.00 0.00 0.00 3.06
3910 4667 1.418373 TCGAAGCTGAACGTGTGATG 58.582 50.000 0.00 0.00 0.00 3.07
3911 4668 1.000717 TCGAAGCTGAACGTGTGATGA 60.001 47.619 0.00 0.00 0.00 2.92
3912 4669 1.792367 CGAAGCTGAACGTGTGATGAA 59.208 47.619 0.00 0.00 0.00 2.57
3913 4670 2.220824 CGAAGCTGAACGTGTGATGAAA 59.779 45.455 0.00 0.00 0.00 2.69
3914 4671 3.303066 CGAAGCTGAACGTGTGATGAAAA 60.303 43.478 0.00 0.00 0.00 2.29
3915 4672 4.597079 GAAGCTGAACGTGTGATGAAAAA 58.403 39.130 0.00 0.00 0.00 1.94
4227 4984 4.898265 CCTCAAGATCATCCAGAACCTCTA 59.102 45.833 0.00 0.00 0.00 2.43
4228 4985 5.010922 CCTCAAGATCATCCAGAACCTCTAG 59.989 48.000 0.00 0.00 0.00 2.43
4229 4986 4.343526 TCAAGATCATCCAGAACCTCTAGC 59.656 45.833 0.00 0.00 0.00 3.42
4231 4988 3.896888 AGATCATCCAGAACCTCTAGCTG 59.103 47.826 0.00 0.00 0.00 4.24
4232 4989 3.388552 TCATCCAGAACCTCTAGCTGA 57.611 47.619 0.00 0.00 0.00 4.26
4233 4990 3.921104 TCATCCAGAACCTCTAGCTGAT 58.079 45.455 0.00 0.00 0.00 2.90
4234 4991 3.894427 TCATCCAGAACCTCTAGCTGATC 59.106 47.826 0.00 0.00 0.00 2.92
4235 4992 2.302260 TCCAGAACCTCTAGCTGATCG 58.698 52.381 0.00 0.00 0.00 3.69
4236 4993 2.092375 TCCAGAACCTCTAGCTGATCGA 60.092 50.000 0.00 0.00 0.00 3.59
4237 4994 2.890311 CCAGAACCTCTAGCTGATCGAT 59.110 50.000 0.00 0.00 0.00 3.59
4238 4995 3.057596 CCAGAACCTCTAGCTGATCGATC 60.058 52.174 18.72 18.72 0.00 3.69
4239 4996 2.811431 AGAACCTCTAGCTGATCGATCG 59.189 50.000 20.03 9.36 0.00 3.69
4240 4997 2.552599 ACCTCTAGCTGATCGATCGA 57.447 50.000 21.86 21.86 0.00 3.59
4271 5028 5.649782 TCGTACTACGATTTTTCTTCCCT 57.350 39.130 7.22 0.00 46.73 4.20
4274 5031 5.290400 CGTACTACGATTTTTCTTCCCTTCC 59.710 44.000 2.17 0.00 46.05 3.46
4275 5032 4.586884 ACTACGATTTTTCTTCCCTTCCC 58.413 43.478 0.00 0.00 0.00 3.97
4276 5033 2.803956 ACGATTTTTCTTCCCTTCCCC 58.196 47.619 0.00 0.00 0.00 4.81
4277 5034 2.109304 ACGATTTTTCTTCCCTTCCCCA 59.891 45.455 0.00 0.00 0.00 4.96
4279 5036 3.131046 CGATTTTTCTTCCCTTCCCCATG 59.869 47.826 0.00 0.00 0.00 3.66
4280 5037 1.937191 TTTTCTTCCCTTCCCCATGC 58.063 50.000 0.00 0.00 0.00 4.06
4281 5038 0.041090 TTTCTTCCCTTCCCCATGCC 59.959 55.000 0.00 0.00 0.00 4.40
4282 5039 0.850883 TTCTTCCCTTCCCCATGCCT 60.851 55.000 0.00 0.00 0.00 4.75
4283 5040 0.045623 TCTTCCCTTCCCCATGCCTA 59.954 55.000 0.00 0.00 0.00 3.93
4284 5041 0.926293 CTTCCCTTCCCCATGCCTAA 59.074 55.000 0.00 0.00 0.00 2.69
4285 5042 1.500736 CTTCCCTTCCCCATGCCTAAT 59.499 52.381 0.00 0.00 0.00 1.73
4286 5043 2.523841 TCCCTTCCCCATGCCTAATA 57.476 50.000 0.00 0.00 0.00 0.98
4287 5044 3.018236 TCCCTTCCCCATGCCTAATAT 57.982 47.619 0.00 0.00 0.00 1.28
4288 5045 2.919602 TCCCTTCCCCATGCCTAATATC 59.080 50.000 0.00 0.00 0.00 1.63
4289 5046 2.922283 CCCTTCCCCATGCCTAATATCT 59.078 50.000 0.00 0.00 0.00 1.98
4290 5047 3.054065 CCCTTCCCCATGCCTAATATCTC 60.054 52.174 0.00 0.00 0.00 2.75
4291 5048 3.054065 CCTTCCCCATGCCTAATATCTCC 60.054 52.174 0.00 0.00 0.00 3.71
4292 5049 2.187958 TCCCCATGCCTAATATCTCCG 58.812 52.381 0.00 0.00 0.00 4.63
4293 5050 1.407437 CCCCATGCCTAATATCTCCGC 60.407 57.143 0.00 0.00 0.00 5.54
4294 5051 1.407437 CCCATGCCTAATATCTCCGCC 60.407 57.143 0.00 0.00 0.00 6.13
4295 5052 1.407437 CCATGCCTAATATCTCCGCCC 60.407 57.143 0.00 0.00 0.00 6.13
4296 5053 0.912486 ATGCCTAATATCTCCGCCCC 59.088 55.000 0.00 0.00 0.00 5.80
4298 5055 1.218316 CCTAATATCTCCGCCCCGC 59.782 63.158 0.00 0.00 0.00 6.13
4299 5056 1.218316 CTAATATCTCCGCCCCGCC 59.782 63.158 0.00 0.00 0.00 6.13
4300 5057 1.229082 TAATATCTCCGCCCCGCCT 60.229 57.895 0.00 0.00 0.00 5.52
4301 5058 1.541310 TAATATCTCCGCCCCGCCTG 61.541 60.000 0.00 0.00 0.00 4.85
4302 5059 4.853142 TATCTCCGCCCCGCCTGT 62.853 66.667 0.00 0.00 0.00 4.00
4305 5062 4.301027 CTCCGCCCCGCCTGTATC 62.301 72.222 0.00 0.00 0.00 2.24
4309 5066 2.495409 CGCCCCGCCTGTATCTACA 61.495 63.158 0.00 0.00 34.56 2.74
4310 5067 1.816863 CGCCCCGCCTGTATCTACAT 61.817 60.000 0.00 0.00 35.36 2.29
4311 5068 0.396811 GCCCCGCCTGTATCTACATT 59.603 55.000 0.00 0.00 35.36 2.71
4312 5069 1.621814 GCCCCGCCTGTATCTACATTA 59.378 52.381 0.00 0.00 35.36 1.90
4313 5070 2.612221 GCCCCGCCTGTATCTACATTAC 60.612 54.545 0.00 0.00 35.36 1.89
4314 5071 2.631062 CCCCGCCTGTATCTACATTACA 59.369 50.000 0.00 0.00 35.36 2.41
4315 5072 3.260884 CCCCGCCTGTATCTACATTACAT 59.739 47.826 0.00 0.00 35.36 2.29
4316 5073 4.464951 CCCCGCCTGTATCTACATTACATA 59.535 45.833 0.00 0.00 35.36 2.29
4317 5074 5.408356 CCCGCCTGTATCTACATTACATAC 58.592 45.833 0.00 0.00 35.36 2.39
4318 5075 5.047590 CCCGCCTGTATCTACATTACATACA 60.048 44.000 0.00 0.00 35.36 2.29
4319 5076 6.351033 CCCGCCTGTATCTACATTACATACAT 60.351 42.308 0.00 0.00 33.55 2.29
4320 5077 6.531594 CCGCCTGTATCTACATTACATACATG 59.468 42.308 0.00 0.00 33.55 3.21
4321 5078 6.035005 CGCCTGTATCTACATTACATACATGC 59.965 42.308 0.00 7.92 39.41 4.06
4322 5079 7.099764 GCCTGTATCTACATTACATACATGCT 58.900 38.462 9.82 0.00 39.56 3.79
4323 5080 7.063898 GCCTGTATCTACATTACATACATGCTG 59.936 40.741 9.82 0.00 39.56 4.41
4324 5081 8.306761 CCTGTATCTACATTACATACATGCTGA 58.693 37.037 3.07 0.00 33.55 4.26
4366 5123 6.237901 AGCTGTTTTGATGTGTAATCCAGTA 58.762 36.000 0.00 0.00 0.00 2.74
4367 5124 6.149474 AGCTGTTTTGATGTGTAATCCAGTAC 59.851 38.462 0.00 0.00 0.00 2.73
4368 5125 6.474819 TGTTTTGATGTGTAATCCAGTACG 57.525 37.500 0.00 0.00 0.00 3.67
4369 5126 5.992829 TGTTTTGATGTGTAATCCAGTACGT 59.007 36.000 0.00 0.00 0.00 3.57
4371 5128 7.116662 TGTTTTGATGTGTAATCCAGTACGTAC 59.883 37.037 18.10 18.10 0.00 3.67
4372 5129 4.912214 TGATGTGTAATCCAGTACGTACG 58.088 43.478 19.49 15.01 0.00 3.67
4377 5134 5.022021 GTGTAATCCAGTACGTACGTGTAC 58.978 45.833 30.25 20.87 44.00 2.90
4404 5161 1.146041 TTCAGTTCGCCAGCAGTGT 59.854 52.632 0.00 0.00 0.00 3.55
4415 5172 2.939022 GCAGTGTGCACCTTCGTC 59.061 61.111 15.69 0.00 44.26 4.20
4416 5173 1.887242 GCAGTGTGCACCTTCGTCA 60.887 57.895 15.69 0.00 44.26 4.35
4430 5187 4.914291 GTCAAGGACGCCGTTTTG 57.086 55.556 8.55 8.55 0.00 2.44
4431 5188 2.019337 GTCAAGGACGCCGTTTTGT 58.981 52.632 12.88 0.00 0.00 2.83
4432 5189 1.219646 GTCAAGGACGCCGTTTTGTA 58.780 50.000 12.88 1.49 0.00 2.41
4433 5190 1.598601 GTCAAGGACGCCGTTTTGTAA 59.401 47.619 12.88 0.00 0.00 2.41
4436 5193 3.315749 TCAAGGACGCCGTTTTGTAAAAT 59.684 39.130 12.88 0.00 0.00 1.82
4437 5194 3.547649 AGGACGCCGTTTTGTAAAATC 57.452 42.857 0.00 0.00 0.00 2.17
4440 5215 4.939439 AGGACGCCGTTTTGTAAAATCTAT 59.061 37.500 0.00 0.00 0.00 1.98
4462 5237 9.017509 TCTATCTACTTTTAAACCTCGTCTTCA 57.982 33.333 0.00 0.00 0.00 3.02
4466 5241 5.425630 ACTTTTAAACCTCGTCTTCACACT 58.574 37.500 0.00 0.00 0.00 3.55
4467 5242 5.522824 ACTTTTAAACCTCGTCTTCACACTC 59.477 40.000 0.00 0.00 0.00 3.51
4478 5253 0.317854 TTCACACTCTGAGCGACACG 60.318 55.000 4.19 0.00 0.00 4.49
4491 5270 0.172578 CGACACGGAGCCATTGACTA 59.827 55.000 0.00 0.00 0.00 2.59
4497 5276 0.108138 GGAGCCATTGACTAGTGCGT 60.108 55.000 0.00 0.00 0.00 5.24
4498 5277 1.136305 GGAGCCATTGACTAGTGCGTA 59.864 52.381 0.00 0.00 0.00 4.42
4499 5278 2.194271 GAGCCATTGACTAGTGCGTAC 58.806 52.381 0.00 0.00 0.00 3.67
4502 5281 0.566136 CATTGACTAGTGCGTACGCG 59.434 55.000 32.65 21.52 45.51 6.01
4509 5288 2.169033 TAGTGCGTACGCGTTCGACA 62.169 55.000 36.67 29.08 45.51 4.35
4533 5312 4.881850 CGGCTCCTGTAAATTTACCAGAAT 59.118 41.667 22.47 0.00 32.72 2.40
4542 5321 8.492673 TGTAAATTTACCAGAATCTACTGCAG 57.507 34.615 22.47 13.48 36.67 4.41
4544 5323 8.947115 GTAAATTTACCAGAATCTACTGCAGTT 58.053 33.333 27.06 6.57 36.67 3.16
4551 5330 4.694509 CAGAATCTACTGCAGTTCAGCTTT 59.305 41.667 27.06 13.44 46.76 3.51
4555 5334 4.956085 TCTACTGCAGTTCAGCTTTTGTA 58.044 39.130 27.06 0.42 46.76 2.41
4556 5335 4.991056 TCTACTGCAGTTCAGCTTTTGTAG 59.009 41.667 27.06 11.52 46.76 2.74
4557 5336 3.545703 ACTGCAGTTCAGCTTTTGTAGT 58.454 40.909 15.25 0.00 46.76 2.73
4568 5347 6.817184 TCAGCTTTTGTAGTACAACTCTCTT 58.183 36.000 15.31 0.00 37.90 2.85
4569 5348 7.272978 TCAGCTTTTGTAGTACAACTCTCTTT 58.727 34.615 15.31 0.00 37.90 2.52
4570 5349 7.224753 TCAGCTTTTGTAGTACAACTCTCTTTG 59.775 37.037 15.31 8.05 37.90 2.77
4572 5351 6.482308 GCTTTTGTAGTACAACTCTCTTTGGA 59.518 38.462 15.31 0.00 37.90 3.53
4573 5352 7.173390 GCTTTTGTAGTACAACTCTCTTTGGAT 59.827 37.037 15.31 0.00 37.90 3.41
4577 5363 2.887151 ACAACTCTCTTTGGATGGGG 57.113 50.000 0.00 0.00 0.00 4.96
4582 5368 4.039603 ACTCTCTTTGGATGGGGAAAAG 57.960 45.455 0.00 0.00 0.00 2.27
4595 5381 1.065600 GAAAAGTGCAACGCTGGCA 59.934 52.632 0.00 0.00 45.86 4.92
4649 5439 0.107848 CACGGGGATTTTACGGAGCT 60.108 55.000 0.00 0.00 0.00 4.09
4655 5445 1.202498 GGATTTTACGGAGCTACGCCT 60.202 52.381 20.78 1.55 37.37 5.52
4656 5446 2.035066 GGATTTTACGGAGCTACGCCTA 59.965 50.000 20.78 0.32 37.37 3.93
4657 5447 3.305881 GGATTTTACGGAGCTACGCCTAT 60.306 47.826 20.78 6.91 37.37 2.57
4658 5448 3.360249 TTTTACGGAGCTACGCCTATC 57.640 47.619 20.78 0.00 37.37 2.08
4659 5449 2.267174 TTACGGAGCTACGCCTATCT 57.733 50.000 20.78 0.00 37.37 1.98
4668 5458 0.101759 TACGCCTATCTGCCACGAAC 59.898 55.000 0.00 0.00 0.00 3.95
4669 5459 1.141881 CGCCTATCTGCCACGAACT 59.858 57.895 0.00 0.00 0.00 3.01
4674 5464 2.483188 CCTATCTGCCACGAACTAACCC 60.483 54.545 0.00 0.00 0.00 4.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 9.758651 TGAAGCTACATTGTTATATACATTCGT 57.241 29.630 0.00 0.00 36.44 3.85
29 30 2.591715 CCCCCGGCGCTATTGAAG 60.592 66.667 7.64 0.00 0.00 3.02
30 31 3.404438 ACCCCCGGCGCTATTGAA 61.404 61.111 7.64 0.00 0.00 2.69
31 32 4.169696 CACCCCCGGCGCTATTGA 62.170 66.667 7.64 0.00 0.00 2.57
39 40 3.804329 TTAGGATGCACCCCCGGC 61.804 66.667 0.00 0.00 40.05 6.13
40 41 2.192175 GTTAGGATGCACCCCCGG 59.808 66.667 0.00 0.00 40.05 5.73
41 42 1.146263 GAGTTAGGATGCACCCCCG 59.854 63.158 0.00 0.00 40.05 5.73
42 43 0.181350 CAGAGTTAGGATGCACCCCC 59.819 60.000 0.00 0.00 40.05 5.40
64 65 1.425428 GCGGCATAGACACAAGCAC 59.575 57.895 0.00 0.00 0.00 4.40
69 70 2.267642 GTGGGCGGCATAGACACA 59.732 61.111 12.47 0.00 32.58 3.72
75 76 3.357444 AATGCAGGTGGGCGGCATA 62.357 57.895 12.47 0.00 46.77 3.14
79 80 2.440796 ATCAATGCAGGTGGGCGG 60.441 61.111 0.00 0.00 36.28 6.13
80 81 2.484062 GGATCAATGCAGGTGGGCG 61.484 63.158 0.00 0.00 36.28 6.13
88 89 2.829914 GCGCCTGGGATCAATGCA 60.830 61.111 0.00 0.00 0.00 3.96
89 90 2.123428 AAGCGCCTGGGATCAATGC 61.123 57.895 2.29 0.00 0.00 3.56
102 103 2.099831 GCAGCATGTCTCAAGCGC 59.900 61.111 0.00 0.00 39.31 5.92
131 132 3.353836 CCACCACGGACCGCAAAG 61.354 66.667 15.39 2.42 36.56 2.77
153 154 3.126831 CGTGAAGATACCCAAGCTCATC 58.873 50.000 0.00 0.00 0.00 2.92
154 155 2.158900 CCGTGAAGATACCCAAGCTCAT 60.159 50.000 0.00 0.00 0.00 2.90
155 156 1.207089 CCGTGAAGATACCCAAGCTCA 59.793 52.381 0.00 0.00 0.00 4.26
156 157 1.480954 TCCGTGAAGATACCCAAGCTC 59.519 52.381 0.00 0.00 0.00 4.09
157 158 1.568504 TCCGTGAAGATACCCAAGCT 58.431 50.000 0.00 0.00 0.00 3.74
158 159 2.622064 ATCCGTGAAGATACCCAAGC 57.378 50.000 0.00 0.00 0.00 4.01
159 160 4.283467 TGGATATCCGTGAAGATACCCAAG 59.717 45.833 17.04 0.00 39.14 3.61
160 161 4.228010 TGGATATCCGTGAAGATACCCAA 58.772 43.478 17.04 0.00 39.14 4.12
172 176 2.369860 AGCACACATCATGGATATCCGT 59.630 45.455 17.04 14.13 39.43 4.69
177 181 3.389002 ACTAGCAGCACACATCATGGATA 59.611 43.478 0.00 0.00 0.00 2.59
189 193 1.291877 CCACACCGAACTAGCAGCAC 61.292 60.000 0.00 0.00 0.00 4.40
191 195 1.004918 ACCACACCGAACTAGCAGC 60.005 57.895 0.00 0.00 0.00 5.25
196 200 0.034337 GCCTTGACCACACCGAACTA 59.966 55.000 0.00 0.00 0.00 2.24
200 204 3.228017 TCGCCTTGACCACACCGA 61.228 61.111 0.00 0.00 0.00 4.69
204 208 2.338620 CTCGTCGCCTTGACCACA 59.661 61.111 0.00 0.00 45.23 4.17
226 230 9.280174 GTTCTTACCCATCATCCGATTAAATAA 57.720 33.333 0.00 0.00 0.00 1.40
232 236 3.728845 CGTTCTTACCCATCATCCGATT 58.271 45.455 0.00 0.00 0.00 3.34
235 239 1.202533 AGCGTTCTTACCCATCATCCG 60.203 52.381 0.00 0.00 0.00 4.18
237 241 4.632153 ACATAGCGTTCTTACCCATCATC 58.368 43.478 0.00 0.00 0.00 2.92
241 245 3.039011 AGGACATAGCGTTCTTACCCAT 58.961 45.455 0.00 0.00 22.78 4.00
264 268 4.260579 CGAAGCACACAAATAACAGTGTCA 60.261 41.667 0.00 0.00 46.44 3.58
265 269 4.025229 TCGAAGCACACAAATAACAGTGTC 60.025 41.667 0.00 0.00 46.44 3.67
276 280 7.866729 TCAAGTATAAAAATCGAAGCACACAA 58.133 30.769 0.00 0.00 0.00 3.33
310 314 6.873076 GGATCCATGATAGACACATCTTCTTC 59.127 42.308 6.95 0.00 36.29 2.87
322 326 4.613437 TGATGATCCGGATCCATGATAGA 58.387 43.478 35.72 18.76 37.02 1.98
361 365 1.475213 GCCTTGCCCATAGTGGTCTAC 60.475 57.143 0.00 0.00 35.17 2.59
363 367 1.207488 TGCCTTGCCCATAGTGGTCT 61.207 55.000 0.00 0.00 35.17 3.85
364 368 0.106519 ATGCCTTGCCCATAGTGGTC 60.107 55.000 0.00 0.00 35.17 4.02
365 369 0.396139 CATGCCTTGCCCATAGTGGT 60.396 55.000 0.00 0.00 35.17 4.16
368 378 1.456331 GCCATGCCTTGCCCATAGT 60.456 57.895 0.00 0.00 0.00 2.12
408 418 0.035598 TTTTGTCCGGCTCCGATGAA 59.964 50.000 10.28 0.00 42.83 2.57
411 421 1.834188 AAATTTTGTCCGGCTCCGAT 58.166 45.000 10.28 0.00 42.83 4.18
413 423 3.775661 AATAAATTTTGTCCGGCTCCG 57.224 42.857 0.00 0.48 39.44 4.63
431 441 9.134055 GACAACTTCCCTACTGTCTACTATAAT 57.866 37.037 0.00 0.00 36.18 1.28
434 444 5.589452 CGACAACTTCCCTACTGTCTACTAT 59.411 44.000 0.00 0.00 36.80 2.12
441 451 2.037144 ACACGACAACTTCCCTACTGT 58.963 47.619 0.00 0.00 0.00 3.55
442 452 2.814280 ACACGACAACTTCCCTACTG 57.186 50.000 0.00 0.00 0.00 2.74
446 456 2.809299 GCCTTAACACGACAACTTCCCT 60.809 50.000 0.00 0.00 0.00 4.20
448 458 1.534163 GGCCTTAACACGACAACTTCC 59.466 52.381 0.00 0.00 0.00 3.46
449 459 1.534163 GGGCCTTAACACGACAACTTC 59.466 52.381 0.84 0.00 0.00 3.01
461 471 0.183492 CAGCTGCTATGGGGCCTTAA 59.817 55.000 0.00 0.00 0.00 1.85
466 476 3.214845 GTGCAGCTGCTATGGGGC 61.215 66.667 36.61 10.92 42.66 5.80
469 479 0.889994 TTTTGGTGCAGCTGCTATGG 59.110 50.000 36.61 0.41 42.66 2.74
478 488 0.871163 CGGTTGCTGTTTTGGTGCAG 60.871 55.000 0.00 0.00 38.01 4.41
479 489 1.140589 CGGTTGCTGTTTTGGTGCA 59.859 52.632 0.00 0.00 34.69 4.57
499 512 1.600511 TACGCCACTCTTCATCGGCA 61.601 55.000 0.00 0.00 45.14 5.69
503 516 3.821600 TCCTATCTACGCCACTCTTCATC 59.178 47.826 0.00 0.00 0.00 2.92
513 526 2.526432 TGGATCCTTCCTATCTACGCC 58.474 52.381 14.23 0.00 43.07 5.68
517 530 5.418692 TCAGGTTGGATCCTTCCTATCTA 57.581 43.478 21.76 9.92 43.07 1.98
518 531 4.286813 TCAGGTTGGATCCTTCCTATCT 57.713 45.455 21.76 3.89 43.07 1.98
522 535 2.573915 GTCTTCAGGTTGGATCCTTCCT 59.426 50.000 14.23 16.69 43.07 3.36
523 536 2.305927 TGTCTTCAGGTTGGATCCTTCC 59.694 50.000 14.23 14.69 42.94 3.46
538 551 1.460267 CGTTCATGTTCGCGTGTCTTC 60.460 52.381 5.77 0.00 35.67 2.87
542 555 2.549282 GCGTTCATGTTCGCGTGT 59.451 55.556 17.44 0.00 42.79 4.49
547 560 1.225104 CGTCGTGCGTTCATGTTCG 60.225 57.895 7.64 7.64 35.54 3.95
552 565 2.776312 AGATATCGTCGTGCGTTCAT 57.224 45.000 0.00 0.00 42.13 2.57
554 567 5.451662 GGAATATAGATATCGTCGTGCGTTC 59.548 44.000 0.00 0.00 42.13 3.95
555 568 5.106436 TGGAATATAGATATCGTCGTGCGTT 60.106 40.000 0.00 0.00 42.13 4.84
557 570 4.905269 TGGAATATAGATATCGTCGTGCG 58.095 43.478 0.00 0.00 43.01 5.34
574 587 8.089625 CCCTTTGGGTCTTTTTATATTGGAAT 57.910 34.615 0.00 0.00 38.25 3.01
596 609 0.041090 AATTTGTTGGATCCGCCCCT 59.959 50.000 7.39 0.00 34.97 4.79
599 612 1.470890 TCGAAATTTGTTGGATCCGCC 59.529 47.619 7.39 0.00 37.10 6.13
600 613 2.515912 GTCGAAATTTGTTGGATCCGC 58.484 47.619 7.39 3.05 0.00 5.54
601 614 2.486203 TGGTCGAAATTTGTTGGATCCG 59.514 45.455 7.39 0.00 0.00 4.18
602 615 4.157656 TGATGGTCGAAATTTGTTGGATCC 59.842 41.667 4.20 4.20 0.00 3.36
607 620 5.046529 TGGTTTGATGGTCGAAATTTGTTG 58.953 37.500 0.00 0.00 0.00 3.33
618 631 6.757897 TTAGATTGACATGGTTTGATGGTC 57.242 37.500 0.00 0.00 0.00 4.02
626 639 7.125391 ACATGGGTTATTAGATTGACATGGTT 58.875 34.615 0.00 0.00 38.89 3.67
629 642 6.919662 GCAACATGGGTTATTAGATTGACATG 59.080 38.462 0.00 0.00 40.04 3.21
639 652 6.481976 CGTCATTAGAGCAACATGGGTTATTA 59.518 38.462 0.00 0.00 34.87 0.98
642 655 4.081365 TCGTCATTAGAGCAACATGGGTTA 60.081 41.667 0.00 0.00 34.87 2.85
643 656 3.009723 CGTCATTAGAGCAACATGGGTT 58.990 45.455 0.00 0.00 37.87 4.11
645 658 2.868583 CTCGTCATTAGAGCAACATGGG 59.131 50.000 0.00 0.00 0.00 4.00
647 660 2.286294 GCCTCGTCATTAGAGCAACATG 59.714 50.000 0.00 0.00 34.56 3.21
650 663 2.010145 TGCCTCGTCATTAGAGCAAC 57.990 50.000 0.00 0.00 34.56 4.17
656 669 3.873361 ACATGTTCATGCCTCGTCATTAG 59.127 43.478 12.00 0.00 0.00 1.73
657 670 3.872696 ACATGTTCATGCCTCGTCATTA 58.127 40.909 12.00 0.00 0.00 1.90
662 675 3.120338 CGTTAAACATGTTCATGCCTCGT 60.120 43.478 12.39 0.00 0.00 4.18
663 676 3.120338 ACGTTAAACATGTTCATGCCTCG 60.120 43.478 12.39 11.83 0.00 4.63
699 712 9.066892 GGATAGTGTAGGCATTGAAATTTGATA 57.933 33.333 0.00 0.00 0.00 2.15
707 720 3.449377 TCGTGGATAGTGTAGGCATTGAA 59.551 43.478 0.00 0.00 0.00 2.69
714 727 6.594159 AGTGAAAATTTCGTGGATAGTGTAGG 59.406 38.462 0.97 0.00 0.00 3.18
720 733 6.968131 TGAGAGTGAAAATTTCGTGGATAG 57.032 37.500 0.97 0.00 0.00 2.08
725 738 6.414079 CCGATATGAGAGTGAAAATTTCGTG 58.586 40.000 0.97 0.00 0.00 4.35
726 739 5.523916 CCCGATATGAGAGTGAAAATTTCGT 59.476 40.000 0.97 0.00 0.00 3.85
727 740 5.523916 ACCCGATATGAGAGTGAAAATTTCG 59.476 40.000 0.97 0.00 0.00 3.46
728 741 6.927294 ACCCGATATGAGAGTGAAAATTTC 57.073 37.500 0.00 0.00 0.00 2.17
729 742 7.280205 GTGTACCCGATATGAGAGTGAAAATTT 59.720 37.037 0.00 0.00 0.00 1.82
730 743 6.761714 GTGTACCCGATATGAGAGTGAAAATT 59.238 38.462 0.00 0.00 0.00 1.82
731 744 6.127168 TGTGTACCCGATATGAGAGTGAAAAT 60.127 38.462 0.00 0.00 0.00 1.82
733 746 4.707934 TGTGTACCCGATATGAGAGTGAAA 59.292 41.667 0.00 0.00 0.00 2.69
736 749 4.855715 ATGTGTACCCGATATGAGAGTG 57.144 45.455 0.00 0.00 0.00 3.51
737 750 5.871396 AAATGTGTACCCGATATGAGAGT 57.129 39.130 0.00 0.00 0.00 3.24
738 751 6.982852 AGTAAATGTGTACCCGATATGAGAG 58.017 40.000 0.00 0.00 0.00 3.20
739 752 6.971726 AGTAAATGTGTACCCGATATGAGA 57.028 37.500 0.00 0.00 0.00 3.27
740 753 7.808381 CACTAGTAAATGTGTACCCGATATGAG 59.192 40.741 0.00 0.00 0.00 2.90
741 754 7.255695 CCACTAGTAAATGTGTACCCGATATGA 60.256 40.741 0.00 0.00 32.76 2.15
742 755 6.866770 CCACTAGTAAATGTGTACCCGATATG 59.133 42.308 0.00 0.00 32.76 1.78
743 756 6.552350 ACCACTAGTAAATGTGTACCCGATAT 59.448 38.462 0.00 0.00 32.76 1.63
744 757 5.893255 ACCACTAGTAAATGTGTACCCGATA 59.107 40.000 0.00 0.00 32.76 2.92
745 758 4.713321 ACCACTAGTAAATGTGTACCCGAT 59.287 41.667 0.00 0.00 32.76 4.18
746 759 4.082081 CACCACTAGTAAATGTGTACCCGA 60.082 45.833 0.00 0.00 32.76 5.14
747 760 4.082081 TCACCACTAGTAAATGTGTACCCG 60.082 45.833 0.00 0.00 32.76 5.28
748 761 5.410355 TCACCACTAGTAAATGTGTACCC 57.590 43.478 0.00 0.00 32.76 3.69
749 762 7.733402 TTTTCACCACTAGTAAATGTGTACC 57.267 36.000 0.00 0.00 32.76 3.34
785 798 9.056005 AGCTTCAAAAAGAAAAAGTGAACTTTT 57.944 25.926 14.02 14.02 43.17 2.27
786 799 8.607441 AGCTTCAAAAAGAAAAAGTGAACTTT 57.393 26.923 2.56 2.56 40.07 2.66
787 800 9.705290 TTAGCTTCAAAAAGAAAAAGTGAACTT 57.295 25.926 0.00 0.00 35.40 2.66
788 801 9.705290 TTTAGCTTCAAAAAGAAAAAGTGAACT 57.295 25.926 0.00 0.00 35.40 3.01
805 818 9.730420 GTTTGAGTGAACTTTTATTTAGCTTCA 57.270 29.630 0.00 0.00 0.00 3.02
806 819 9.730420 TGTTTGAGTGAACTTTTATTTAGCTTC 57.270 29.630 0.00 0.00 0.00 3.86
807 820 9.736023 CTGTTTGAGTGAACTTTTATTTAGCTT 57.264 29.630 0.00 0.00 0.00 3.74
808 821 7.862873 GCTGTTTGAGTGAACTTTTATTTAGCT 59.137 33.333 0.00 0.00 0.00 3.32
809 822 7.647715 TGCTGTTTGAGTGAACTTTTATTTAGC 59.352 33.333 0.00 0.00 0.00 3.09
810 823 9.515020 TTGCTGTTTGAGTGAACTTTTATTTAG 57.485 29.630 0.00 0.00 0.00 1.85
811 824 9.862371 TTTGCTGTTTGAGTGAACTTTTATTTA 57.138 25.926 0.00 0.00 0.00 1.40
815 828 6.329496 CCTTTGCTGTTTGAGTGAACTTTTA 58.671 36.000 0.00 0.00 0.00 1.52
905 918 0.451783 GTGATGGATGGTTGGTTCGC 59.548 55.000 0.00 0.00 0.00 4.70
927 940 1.376037 GGAAGCGGAACCTCCTGTG 60.376 63.158 0.00 0.00 33.30 3.66
928 941 1.536662 AGGAAGCGGAACCTCCTGT 60.537 57.895 0.28 0.00 33.30 4.00
929 942 1.219393 GAGGAAGCGGAACCTCCTG 59.781 63.158 5.11 0.00 44.70 3.86
930 943 3.715015 GAGGAAGCGGAACCTCCT 58.285 61.111 0.00 0.63 44.70 3.69
948 962 0.739112 GCCGCTCCTCTGTTTCTCTG 60.739 60.000 0.00 0.00 0.00 3.35
1068 1090 3.151022 GCCTGGGACGAGGAGGAG 61.151 72.222 4.43 0.00 34.69 3.69
1229 1258 2.657944 GCTCCAGAGCGCGAGATG 60.658 66.667 12.10 3.76 45.29 2.90
1261 1290 3.776659 TTCAGTCACCGCGCACGAA 62.777 57.895 8.75 3.73 43.93 3.85
1269 1298 1.860950 CACTTCAGTGTTCAGTCACCG 59.139 52.381 0.00 0.00 40.96 4.94
1290 1324 1.036707 ACCACCATCAAAACCCAACG 58.963 50.000 0.00 0.00 0.00 4.10
1302 1336 0.689080 TGCAACCAACCAACCACCAT 60.689 50.000 0.00 0.00 0.00 3.55
1355 1393 2.584391 GCCGTCCTGGTCCTTGAGT 61.584 63.158 0.00 0.00 41.21 3.41
1460 1498 9.221775 CGCTAAAATAAAATAAAATCGCTGACT 57.778 29.630 0.00 0.00 0.00 3.41
1466 1504 9.221775 AGCTGTCGCTAAAATAAAATAAAATCG 57.778 29.630 0.00 0.00 46.79 3.34
1486 1524 4.771590 TTGATGGATGAACAAAGCTGTC 57.228 40.909 0.00 0.00 33.45 3.51
1491 1529 9.512435 GACTGATTAATTGATGGATGAACAAAG 57.488 33.333 0.00 0.00 0.00 2.77
1494 1532 7.118060 TGGACTGATTAATTGATGGATGAACA 58.882 34.615 0.00 0.00 0.00 3.18
1495 1533 7.572523 TGGACTGATTAATTGATGGATGAAC 57.427 36.000 0.00 0.00 0.00 3.18
1547 1585 6.034591 CGACGAATGAAGTGGTAAATAGTCT 58.965 40.000 0.00 0.00 0.00 3.24
1651 1802 3.430929 CGCACTCTGTTTCTAAGGCCTAT 60.431 47.826 5.16 0.00 0.00 2.57
1652 1803 2.094182 CGCACTCTGTTTCTAAGGCCTA 60.094 50.000 5.16 0.00 0.00 3.93
1653 1804 1.338200 CGCACTCTGTTTCTAAGGCCT 60.338 52.381 0.00 0.00 0.00 5.19
1654 1805 1.079503 CGCACTCTGTTTCTAAGGCC 58.920 55.000 0.00 0.00 0.00 5.19
1655 1806 1.797025 ACGCACTCTGTTTCTAAGGC 58.203 50.000 0.00 0.00 0.00 4.35
1656 1807 4.304110 TGTTACGCACTCTGTTTCTAAGG 58.696 43.478 0.00 0.00 0.00 2.69
1657 1808 5.900339 TTGTTACGCACTCTGTTTCTAAG 57.100 39.130 0.00 0.00 0.00 2.18
1658 1809 6.854496 ATTTGTTACGCACTCTGTTTCTAA 57.146 33.333 0.00 0.00 0.00 2.10
1659 1810 6.854496 AATTTGTTACGCACTCTGTTTCTA 57.146 33.333 0.00 0.00 0.00 2.10
1660 1811 5.751243 AATTTGTTACGCACTCTGTTTCT 57.249 34.783 0.00 0.00 0.00 2.52
1661 1812 5.968848 TGAAATTTGTTACGCACTCTGTTTC 59.031 36.000 0.00 0.00 0.00 2.78
1672 1823 4.718858 TGGACGACTGAAATTTGTTACG 57.281 40.909 0.00 0.00 0.00 3.18
1681 1832 7.753132 GCACAAATAATTATTGGACGACTGAAA 59.247 33.333 17.80 0.00 32.02 2.69
1682 1833 7.120579 AGCACAAATAATTATTGGACGACTGAA 59.879 33.333 17.80 0.00 32.02 3.02
1683 1834 6.597672 AGCACAAATAATTATTGGACGACTGA 59.402 34.615 17.80 0.00 32.02 3.41
1684 1835 6.785191 AGCACAAATAATTATTGGACGACTG 58.215 36.000 17.80 10.04 32.02 3.51
1686 1837 9.730420 ATTAAGCACAAATAATTATTGGACGAC 57.270 29.630 17.80 5.52 32.02 4.34
1703 1869 3.283751 CCCCAAATCCGTATTAAGCACA 58.716 45.455 0.00 0.00 0.00 4.57
1709 1875 4.228824 ACTAGAGCCCCAAATCCGTATTA 58.771 43.478 0.00 0.00 0.00 0.98
1732 1898 8.677148 ATACTTGACAGTGTGATTTAAACAGT 57.323 30.769 0.00 0.00 34.06 3.55
1734 1900 8.669946 TGATACTTGACAGTGTGATTTAAACA 57.330 30.769 0.00 0.00 34.06 2.83
1749 1915 2.000447 GACACGCCCTTGATACTTGAC 59.000 52.381 0.00 0.00 0.00 3.18
1798 1964 7.173218 GGATTACTTACCATATGTGTCACATGG 59.827 40.741 25.63 22.49 44.04 3.66
1799 1965 7.714813 TGGATTACTTACCATATGTGTCACATG 59.285 37.037 25.63 13.24 39.53 3.21
1800 1966 7.801104 TGGATTACTTACCATATGTGTCACAT 58.199 34.615 21.70 21.70 42.35 3.21
1801 1967 7.189079 TGGATTACTTACCATATGTGTCACA 57.811 36.000 8.40 8.40 0.00 3.58
1802 1968 8.395633 GTTTGGATTACTTACCATATGTGTCAC 58.604 37.037 1.24 0.00 36.02 3.67
1803 1969 7.554835 GGTTTGGATTACTTACCATATGTGTCA 59.445 37.037 1.24 0.00 36.02 3.58
1804 1970 7.554835 TGGTTTGGATTACTTACCATATGTGTC 59.445 37.037 1.24 0.00 34.13 3.67
1805 1971 7.406916 TGGTTTGGATTACTTACCATATGTGT 58.593 34.615 1.24 2.24 34.13 3.72
1806 1972 7.873719 TGGTTTGGATTACTTACCATATGTG 57.126 36.000 1.24 0.00 34.13 3.21
1807 1973 9.131791 GAATGGTTTGGATTACTTACCATATGT 57.868 33.333 0.00 0.00 46.10 2.29
1808 1974 9.130661 TGAATGGTTTGGATTACTTACCATATG 57.869 33.333 0.00 0.00 46.10 1.78
1809 1975 9.707957 TTGAATGGTTTGGATTACTTACCATAT 57.292 29.630 0.00 0.00 46.10 1.78
1810 1976 9.535170 TTTGAATGGTTTGGATTACTTACCATA 57.465 29.630 0.00 0.00 46.10 2.74
1812 1978 7.841282 TTTGAATGGTTTGGATTACTTACCA 57.159 32.000 0.00 0.00 42.57 3.25
1813 1979 9.203421 CTTTTTGAATGGTTTGGATTACTTACC 57.797 33.333 0.00 0.00 0.00 2.85
1814 1980 9.974980 TCTTTTTGAATGGTTTGGATTACTTAC 57.025 29.630 0.00 0.00 0.00 2.34
1816 1982 9.898152 TTTCTTTTTGAATGGTTTGGATTACTT 57.102 25.926 0.00 0.00 34.24 2.24
1817 1983 9.898152 TTTTCTTTTTGAATGGTTTGGATTACT 57.102 25.926 0.00 0.00 34.24 2.24
1820 1986 9.112725 CTCTTTTCTTTTTGAATGGTTTGGATT 57.887 29.630 0.00 0.00 34.24 3.01
1821 1987 7.227314 GCTCTTTTCTTTTTGAATGGTTTGGAT 59.773 33.333 0.00 0.00 34.24 3.41
1822 1988 6.538381 GCTCTTTTCTTTTTGAATGGTTTGGA 59.462 34.615 0.00 0.00 34.24 3.53
1823 1989 6.509997 CGCTCTTTTCTTTTTGAATGGTTTGG 60.510 38.462 0.00 0.00 34.24 3.28
1824 1990 6.035975 ACGCTCTTTTCTTTTTGAATGGTTTG 59.964 34.615 0.00 0.00 34.24 2.93
1825 1991 6.106003 ACGCTCTTTTCTTTTTGAATGGTTT 58.894 32.000 0.00 0.00 34.24 3.27
1826 1992 5.660460 ACGCTCTTTTCTTTTTGAATGGTT 58.340 33.333 0.00 0.00 34.24 3.67
1827 1993 5.262588 ACGCTCTTTTCTTTTTGAATGGT 57.737 34.783 0.00 0.00 34.24 3.55
1828 1994 6.363357 CCTTACGCTCTTTTCTTTTTGAATGG 59.637 38.462 0.00 0.00 34.24 3.16
1829 1995 7.138736 TCCTTACGCTCTTTTCTTTTTGAATG 58.861 34.615 0.00 0.00 34.24 2.67
1830 1996 7.272037 TCCTTACGCTCTTTTCTTTTTGAAT 57.728 32.000 0.00 0.00 34.24 2.57
1831 1997 6.687081 TCCTTACGCTCTTTTCTTTTTGAA 57.313 33.333 0.00 0.00 0.00 2.69
1832 1998 6.687081 TTCCTTACGCTCTTTTCTTTTTGA 57.313 33.333 0.00 0.00 0.00 2.69
1833 1999 7.567590 GCATTTCCTTACGCTCTTTTCTTTTTG 60.568 37.037 0.00 0.00 0.00 2.44
1834 2000 6.420903 GCATTTCCTTACGCTCTTTTCTTTTT 59.579 34.615 0.00 0.00 0.00 1.94
1835 2001 5.920840 GCATTTCCTTACGCTCTTTTCTTTT 59.079 36.000 0.00 0.00 0.00 2.27
1836 2002 5.241728 AGCATTTCCTTACGCTCTTTTCTTT 59.758 36.000 0.00 0.00 0.00 2.52
1837 2003 4.762251 AGCATTTCCTTACGCTCTTTTCTT 59.238 37.500 0.00 0.00 0.00 2.52
1838 2004 4.154918 CAGCATTTCCTTACGCTCTTTTCT 59.845 41.667 0.00 0.00 30.72 2.52
1839 2005 4.406943 CAGCATTTCCTTACGCTCTTTTC 58.593 43.478 0.00 0.00 30.72 2.29
1840 2006 3.366374 GCAGCATTTCCTTACGCTCTTTT 60.366 43.478 0.00 0.00 30.72 2.27
1841 2007 2.162408 GCAGCATTTCCTTACGCTCTTT 59.838 45.455 0.00 0.00 30.72 2.52
1842 2008 1.740025 GCAGCATTTCCTTACGCTCTT 59.260 47.619 0.00 0.00 30.72 2.85
1843 2009 1.373570 GCAGCATTTCCTTACGCTCT 58.626 50.000 0.00 0.00 30.72 4.09
1844 2010 0.378610 GGCAGCATTTCCTTACGCTC 59.621 55.000 0.00 0.00 30.72 5.03
1845 2011 1.032114 GGGCAGCATTTCCTTACGCT 61.032 55.000 0.00 0.00 34.29 5.07
1846 2012 1.312371 TGGGCAGCATTTCCTTACGC 61.312 55.000 0.00 0.00 0.00 4.42
1847 2013 1.173043 TTGGGCAGCATTTCCTTACG 58.827 50.000 0.00 0.00 0.00 3.18
1853 2019 2.680577 CAAGTCTTTGGGCAGCATTTC 58.319 47.619 0.00 0.00 0.00 2.17
1879 2045 1.808945 CAGGTCAGCTAAAACTGCCTG 59.191 52.381 15.53 15.53 46.07 4.85
1888 2054 8.958060 ATAATAATAGAGTCCAGGTCAGCTAA 57.042 34.615 0.00 0.00 0.00 3.09
2017 2185 5.475719 CAAGTTCATGCCAAGAACATTGAT 58.524 37.500 14.50 0.00 45.93 2.57
2066 2234 9.912634 AGACGATTTTTGTGATTTATTGAATGT 57.087 25.926 0.00 0.00 0.00 2.71
2126 2294 5.065988 GCTCACCTCTTGTTTTAGTTTGTGA 59.934 40.000 0.00 0.00 0.00 3.58
2165 2333 6.547880 GGTAGAGAGATGTGGACTATTTGAGA 59.452 42.308 0.00 0.00 0.00 3.27
2173 2341 5.459982 AGTTAGGTAGAGAGATGTGGACT 57.540 43.478 0.00 0.00 0.00 3.85
2174 2342 7.653647 CAATAGTTAGGTAGAGAGATGTGGAC 58.346 42.308 0.00 0.00 0.00 4.02
2209 2377 3.005684 GGTTGCATTGACAATGTGAAGGA 59.994 43.478 25.18 1.74 41.01 3.36
2255 2423 2.194271 GCAACATCCACGTCTAGTAGC 58.806 52.381 0.00 0.00 0.00 3.58
2282 2450 0.036010 AACCATGCCGACTGAGGAAG 60.036 55.000 0.00 0.00 0.00 3.46
2283 2451 0.036388 GAACCATGCCGACTGAGGAA 60.036 55.000 0.00 0.00 0.00 3.36
2285 2453 1.450312 GGAACCATGCCGACTGAGG 60.450 63.158 0.00 0.00 0.00 3.86
2286 2454 0.107508 ATGGAACCATGCCGACTGAG 60.108 55.000 5.47 0.00 35.03 3.35
2288 2456 1.097547 GGATGGAACCATGCCGACTG 61.098 60.000 11.27 0.00 38.57 3.51
2290 2458 0.394352 AAGGATGGAACCATGCCGAC 60.394 55.000 18.92 2.07 44.29 4.79
2291 2459 0.331278 AAAGGATGGAACCATGCCGA 59.669 50.000 18.92 0.00 44.29 5.54
2292 2460 0.740737 GAAAGGATGGAACCATGCCG 59.259 55.000 18.92 0.00 44.29 5.69
2293 2461 2.149973 AGAAAGGATGGAACCATGCC 57.850 50.000 18.92 14.84 44.29 4.40
2314 2482 1.548269 CAAGGAGGAAGACGAAGAGCT 59.452 52.381 0.00 0.00 0.00 4.09
2323 2491 2.592993 CGGTGGGCAAGGAGGAAGA 61.593 63.158 0.00 0.00 0.00 2.87
2340 2508 4.489771 GGTGGAGGGTGGATGGCG 62.490 72.222 0.00 0.00 0.00 5.69
2366 2534 4.284746 GTGGAAAAGGAGAGAAAGAGAGGA 59.715 45.833 0.00 0.00 0.00 3.71
2391 2559 1.479323 AGCGGCGACTTATACAAGGAA 59.521 47.619 12.98 0.00 35.97 3.36
2396 2564 1.605710 GACCTAGCGGCGACTTATACA 59.394 52.381 12.98 0.00 0.00 2.29
2397 2565 1.878734 AGACCTAGCGGCGACTTATAC 59.121 52.381 12.98 0.00 0.00 1.47
2414 2582 0.598065 AATGCGCCAAAGGAACAGAC 59.402 50.000 4.18 0.00 0.00 3.51
2447 2615 0.890683 CTTGGTGGGACATTTCAGCC 59.109 55.000 0.00 0.00 44.52 4.85
2462 2630 3.316308 CCGAGGATTAGAAAATGGCTTGG 59.684 47.826 0.00 0.00 0.00 3.61
2463 2631 3.316308 CCCGAGGATTAGAAAATGGCTTG 59.684 47.826 0.00 0.00 0.00 4.01
2465 2633 2.777692 TCCCGAGGATTAGAAAATGGCT 59.222 45.455 0.00 0.00 0.00 4.75
2503 2671 0.391263 GATGGTGACGAAGGGTGGAC 60.391 60.000 0.00 0.00 0.00 4.02
2539 2707 2.963782 AGGTAGAGTTCTTGTCGGTTGT 59.036 45.455 0.00 0.00 0.00 3.32
2567 2735 2.589014 GGCGCATTCTTGTTCTTCTTG 58.411 47.619 10.83 0.00 0.00 3.02
2585 2753 4.001652 GCTACTTTCCCTTATTATCCGGC 58.998 47.826 0.00 0.00 0.00 6.13
2586 2754 4.041198 TGGCTACTTTCCCTTATTATCCGG 59.959 45.833 0.00 0.00 0.00 5.14
2603 2771 5.912955 GTGCATAATTATCGGTTTTGGCTAC 59.087 40.000 0.00 0.00 0.00 3.58
2612 2780 2.869801 CGGTGTGTGCATAATTATCGGT 59.130 45.455 0.00 0.00 0.00 4.69
2613 2781 3.059868 GTCGGTGTGTGCATAATTATCGG 60.060 47.826 0.00 0.00 0.00 4.18
2616 2784 2.869801 CGGTCGGTGTGTGCATAATTAT 59.130 45.455 0.00 0.00 0.00 1.28
2635 2803 4.758251 TGATGCGTGACCCTGCGG 62.758 66.667 0.00 0.00 0.00 5.69
2637 2805 2.821366 CCTGATGCGTGACCCTGC 60.821 66.667 0.00 0.00 0.00 4.85
2650 2818 1.078918 CATCCAACAGCTCGCCTGA 60.079 57.895 9.46 0.00 44.64 3.86
2684 2852 1.153449 TTGTAGGATGCCGGCTTCG 60.153 57.895 29.63 0.00 0.00 3.79
2688 2856 0.392461 TCTTGTTGTAGGATGCCGGC 60.392 55.000 22.73 22.73 0.00 6.13
2692 2860 2.866762 GTCGGATCTTGTTGTAGGATGC 59.133 50.000 0.00 0.00 31.17 3.91
2695 2863 3.132289 GGATGTCGGATCTTGTTGTAGGA 59.868 47.826 0.00 0.00 0.00 2.94
2704 2872 1.069204 CCATCGTGGATGTCGGATCTT 59.931 52.381 5.03 0.00 40.96 2.40
2706 2874 0.946221 GCCATCGTGGATGTCGGATC 60.946 60.000 8.04 0.00 40.96 3.36
2720 2888 1.598701 GCAGTCTTGTTGGGGCCATC 61.599 60.000 4.39 0.00 0.00 3.51
2722 2890 2.203480 GCAGTCTTGTTGGGGCCA 60.203 61.111 4.39 0.00 0.00 5.36
2731 2899 4.677584 GACCTATCTAGTGTGCAGTCTTG 58.322 47.826 0.00 0.00 0.00 3.02
2733 2901 2.946329 CGACCTATCTAGTGTGCAGTCT 59.054 50.000 0.00 0.00 0.00 3.24
2734 2902 2.943690 TCGACCTATCTAGTGTGCAGTC 59.056 50.000 0.00 0.00 0.00 3.51
2735 2903 3.000684 TCGACCTATCTAGTGTGCAGT 57.999 47.619 0.00 0.00 0.00 4.40
2737 2905 3.551846 TCATCGACCTATCTAGTGTGCA 58.448 45.455 0.00 0.00 0.00 4.57
2738 2906 4.569761 TTCATCGACCTATCTAGTGTGC 57.430 45.455 0.00 0.00 0.00 4.57
2739 2907 6.319141 TGATTCATCGACCTATCTAGTGTG 57.681 41.667 0.00 0.00 0.00 3.82
2740 2908 6.961360 TTGATTCATCGACCTATCTAGTGT 57.039 37.500 0.00 0.00 0.00 3.55
2748 2916 3.709141 TGGGTGATTGATTCATCGACCTA 59.291 43.478 0.00 1.35 36.21 3.08
2773 2941 0.179045 AGTGTCGCCTCTGCTTGTTT 60.179 50.000 0.00 0.00 34.43 2.83
2780 2948 1.950216 TGCTATAGAGTGTCGCCTCTG 59.050 52.381 3.21 0.00 41.81 3.35
2807 2975 2.450345 GCGGAGGCTACGAAAACCG 61.450 63.158 26.08 14.00 42.63 4.44
2822 2990 0.387622 TCGTTTGTAAGTCGGAGCGG 60.388 55.000 0.00 0.00 0.00 5.52
2828 2996 1.071107 TGCGCTTTCGTTTGTAAGTCG 60.071 47.619 9.73 0.00 38.14 4.18
2829 2997 2.656192 TGCGCTTTCGTTTGTAAGTC 57.344 45.000 9.73 0.00 38.14 3.01
2832 3000 2.847133 GTGTTTGCGCTTTCGTTTGTAA 59.153 40.909 9.73 0.00 38.14 2.41
2842 3010 1.226945 GGCTTGTGTGTTTGCGCTT 60.227 52.632 9.73 0.00 0.00 4.68
2846 3014 0.869880 GGTTCGGCTTGTGTGTTTGC 60.870 55.000 0.00 0.00 0.00 3.68
2866 3034 2.504681 CATTTGTTGCGCGGCCTC 60.505 61.111 8.83 0.00 0.00 4.70
2867 3035 2.981560 CTCATTTGTTGCGCGGCCT 61.982 57.895 8.83 0.00 0.00 5.19
2868 3036 2.504681 CTCATTTGTTGCGCGGCC 60.505 61.111 8.83 0.00 0.00 6.13
2870 3038 2.504681 GGCTCATTTGTTGCGCGG 60.505 61.111 8.83 0.00 36.91 6.46
2872 3040 1.005294 CAGTGGCTCATTTGTTGCGC 61.005 55.000 0.00 0.00 35.25 6.09
2876 3045 1.963515 GGAACCAGTGGCTCATTTGTT 59.036 47.619 14.45 0.00 0.00 2.83
2877 3046 1.620822 GGAACCAGTGGCTCATTTGT 58.379 50.000 14.45 0.00 0.00 2.83
2882 3051 2.137528 TCACGGAACCAGTGGCTCA 61.138 57.895 14.45 0.00 39.86 4.26
2913 3082 0.400670 GGATGAAGTAGGAGGGGGCT 60.401 60.000 0.00 0.00 0.00 5.19
2968 3265 1.383744 GAGATCGATATTGCACGACGC 59.616 52.381 0.00 0.00 41.17 5.19
2970 3267 1.979469 CCGAGATCGATATTGCACGAC 59.021 52.381 0.00 0.00 43.02 4.34
2981 3278 1.299392 CAATCTGCGCCGAGATCGA 60.299 57.895 10.36 0.00 43.02 3.59
2982 3279 1.148157 AACAATCTGCGCCGAGATCG 61.148 55.000 10.36 2.67 31.07 3.69
2989 3286 1.355971 TAGAACGAACAATCTGCGCC 58.644 50.000 4.18 0.00 0.00 6.53
3036 3738 7.041167 TCAGGCTCGATCCAACAAATATAAATG 60.041 37.037 8.23 0.00 0.00 2.32
3037 3739 6.998074 TCAGGCTCGATCCAACAAATATAAAT 59.002 34.615 8.23 0.00 0.00 1.40
3038 3740 6.260050 GTCAGGCTCGATCCAACAAATATAAA 59.740 38.462 8.23 0.00 0.00 1.40
3039 3741 5.758296 GTCAGGCTCGATCCAACAAATATAA 59.242 40.000 8.23 0.00 0.00 0.98
3117 3836 6.292865 GCGAATGATCTGATTTGGACGAAATA 60.293 38.462 0.00 0.00 34.18 1.40
3156 3875 1.078848 CCGGCTGAACCAAGAGGAG 60.079 63.158 0.00 0.00 39.03 3.69
3622 4341 1.224069 CGGCCATGACCACGATGATC 61.224 60.000 2.24 0.00 0.00 2.92
3820 4545 1.957668 TCATCGATCCAATGTGCTGG 58.042 50.000 0.00 0.00 37.87 4.85
3823 4548 2.679837 ACAGTTCATCGATCCAATGTGC 59.320 45.455 0.00 0.00 0.00 4.57
3827 4552 5.987953 CAGATACACAGTTCATCGATCCAAT 59.012 40.000 0.00 0.00 0.00 3.16
3832 4557 4.391405 TGCAGATACACAGTTCATCGAT 57.609 40.909 0.00 0.00 0.00 3.59
3891 4648 1.000717 TCATCACACGTTCAGCTTCGA 60.001 47.619 9.22 0.00 0.00 3.71
3892 4649 1.418373 TCATCACACGTTCAGCTTCG 58.582 50.000 0.00 0.00 0.00 3.79
3912 4669 3.404141 AACGCGCACGCCTGTTTTT 62.404 52.632 5.73 0.00 45.53 1.94
3913 4670 3.800323 GAACGCGCACGCCTGTTTT 62.800 57.895 5.73 0.00 45.53 2.43
3914 4671 4.307908 GAACGCGCACGCCTGTTT 62.308 61.111 5.73 0.00 45.53 2.83
4114 4871 2.363925 ACGTAGGTCTGCCTCCCC 60.364 66.667 0.00 0.00 45.64 4.81
4235 4992 6.627172 TCGTAGTACGATCCTCGAATCGATC 61.627 48.000 21.10 14.32 46.73 3.69
4236 4993 4.853689 TCGTAGTACGATCCTCGAATCGAT 60.854 45.833 21.10 12.06 46.73 3.59
4237 4994 3.550842 TCGTAGTACGATCCTCGAATCGA 60.551 47.826 21.10 4.91 46.73 3.59
4238 4995 2.728318 TCGTAGTACGATCCTCGAATCG 59.272 50.000 21.10 15.98 46.73 3.34
4250 5007 5.290400 GGAAGGGAAGAAAAATCGTAGTACG 59.710 44.000 16.65 16.65 44.19 3.67
4252 5009 5.338626 GGGGAAGGGAAGAAAAATCGTAGTA 60.339 44.000 0.00 0.00 0.00 1.82
4253 5010 4.567116 GGGGAAGGGAAGAAAAATCGTAGT 60.567 45.833 0.00 0.00 0.00 2.73
4254 5011 3.945921 GGGGAAGGGAAGAAAAATCGTAG 59.054 47.826 0.00 0.00 0.00 3.51
4255 5012 3.331294 TGGGGAAGGGAAGAAAAATCGTA 59.669 43.478 0.00 0.00 0.00 3.43
4256 5013 2.109304 TGGGGAAGGGAAGAAAAATCGT 59.891 45.455 0.00 0.00 0.00 3.73
4257 5014 2.802719 TGGGGAAGGGAAGAAAAATCG 58.197 47.619 0.00 0.00 0.00 3.34
4258 5015 3.118629 GCATGGGGAAGGGAAGAAAAATC 60.119 47.826 0.00 0.00 0.00 2.17
4259 5016 2.840038 GCATGGGGAAGGGAAGAAAAAT 59.160 45.455 0.00 0.00 0.00 1.82
4260 5017 2.256306 GCATGGGGAAGGGAAGAAAAA 58.744 47.619 0.00 0.00 0.00 1.94
4261 5018 1.552254 GGCATGGGGAAGGGAAGAAAA 60.552 52.381 0.00 0.00 0.00 2.29
4262 5019 0.041090 GGCATGGGGAAGGGAAGAAA 59.959 55.000 0.00 0.00 0.00 2.52
4263 5020 0.850883 AGGCATGGGGAAGGGAAGAA 60.851 55.000 0.00 0.00 0.00 2.52
4266 5023 1.619298 ATTAGGCATGGGGAAGGGAA 58.381 50.000 0.00 0.00 0.00 3.97
4267 5024 2.523841 TATTAGGCATGGGGAAGGGA 57.476 50.000 0.00 0.00 0.00 4.20
4268 5025 2.922283 AGATATTAGGCATGGGGAAGGG 59.078 50.000 0.00 0.00 0.00 3.95
4270 5027 3.369892 CGGAGATATTAGGCATGGGGAAG 60.370 52.174 0.00 0.00 0.00 3.46
4271 5028 2.571653 CGGAGATATTAGGCATGGGGAA 59.428 50.000 0.00 0.00 0.00 3.97
4274 5031 1.407437 GGCGGAGATATTAGGCATGGG 60.407 57.143 0.00 0.00 0.00 4.00
4275 5032 1.407437 GGGCGGAGATATTAGGCATGG 60.407 57.143 0.00 0.00 0.00 3.66
4276 5033 1.407437 GGGGCGGAGATATTAGGCATG 60.407 57.143 0.00 0.00 0.00 4.06
4277 5034 0.912486 GGGGCGGAGATATTAGGCAT 59.088 55.000 0.00 0.00 0.00 4.40
4279 5036 1.218316 CGGGGCGGAGATATTAGGC 59.782 63.158 0.00 0.00 0.00 3.93
4280 5037 1.218316 GCGGGGCGGAGATATTAGG 59.782 63.158 0.00 0.00 0.00 2.69
4281 5038 1.218316 GGCGGGGCGGAGATATTAG 59.782 63.158 0.00 0.00 0.00 1.73
4282 5039 1.229082 AGGCGGGGCGGAGATATTA 60.229 57.895 0.00 0.00 0.00 0.98
4283 5040 2.526873 AGGCGGGGCGGAGATATT 60.527 61.111 0.00 0.00 0.00 1.28
4284 5041 2.725127 TACAGGCGGGGCGGAGATAT 62.725 60.000 0.00 0.00 0.00 1.63
4285 5042 2.725127 ATACAGGCGGGGCGGAGATA 62.725 60.000 0.00 0.00 0.00 1.98
4286 5043 4.853142 TACAGGCGGGGCGGAGAT 62.853 66.667 0.00 0.00 0.00 2.75
4287 5044 4.853142 ATACAGGCGGGGCGGAGA 62.853 66.667 0.00 0.00 0.00 3.71
4288 5045 4.301027 GATACAGGCGGGGCGGAG 62.301 72.222 0.00 0.00 0.00 4.63
4289 5046 3.440162 TAGATACAGGCGGGGCGGA 62.440 63.158 0.00 0.00 0.00 5.54
4290 5047 2.915659 TAGATACAGGCGGGGCGG 60.916 66.667 0.00 0.00 0.00 6.13
4291 5048 1.816863 ATGTAGATACAGGCGGGGCG 61.817 60.000 0.00 0.00 39.92 6.13
4292 5049 0.396811 AATGTAGATACAGGCGGGGC 59.603 55.000 0.00 0.00 39.92 5.80
4293 5050 2.631062 TGTAATGTAGATACAGGCGGGG 59.369 50.000 0.00 0.00 39.92 5.73
4294 5051 4.537135 ATGTAATGTAGATACAGGCGGG 57.463 45.455 0.00 0.00 39.92 6.13
4295 5052 6.020971 TGTATGTAATGTAGATACAGGCGG 57.979 41.667 2.14 0.00 39.22 6.13
4296 5053 7.511809 CATGTATGTAATGTAGATACAGGCG 57.488 40.000 10.05 0.81 44.70 5.52
4298 5055 8.306761 TCAGCATGTATGTAATGTAGATACAGG 58.693 37.037 10.95 10.95 44.70 4.00
4299 5056 9.696917 TTCAGCATGTATGTAATGTAGATACAG 57.303 33.333 10.05 5.26 44.70 2.74
4300 5057 9.476202 GTTCAGCATGTATGTAATGTAGATACA 57.524 33.333 7.47 7.47 45.29 2.29
4301 5058 9.476202 TGTTCAGCATGTATGTAATGTAGATAC 57.524 33.333 0.00 0.00 37.40 2.24
4318 5075 1.607148 CGCATGGATCATGTTCAGCAT 59.393 47.619 6.14 0.00 43.10 3.79
4319 5076 1.018910 CGCATGGATCATGTTCAGCA 58.981 50.000 6.14 0.00 43.10 4.41
4320 5077 1.019673 ACGCATGGATCATGTTCAGC 58.980 50.000 6.14 5.77 43.10 4.26
4321 5078 3.721035 TCTACGCATGGATCATGTTCAG 58.279 45.455 6.14 4.76 43.10 3.02
4322 5079 3.721035 CTCTACGCATGGATCATGTTCA 58.279 45.455 6.14 0.00 43.10 3.18
4323 5080 2.478134 GCTCTACGCATGGATCATGTTC 59.522 50.000 9.28 0.00 43.10 3.18
4324 5081 2.103771 AGCTCTACGCATGGATCATGTT 59.896 45.455 9.28 0.00 43.10 2.71
4377 5134 3.858040 GCGAACTGAACATACGCAG 57.142 52.632 0.00 0.00 46.75 5.18
4380 5137 0.370273 GCTGGCGAACTGAACATACG 59.630 55.000 0.00 0.00 0.00 3.06
4381 5138 1.394917 CTGCTGGCGAACTGAACATAC 59.605 52.381 0.00 0.00 0.00 2.39
4413 5170 1.219646 TACAAAACGGCGTCCTTGAC 58.780 50.000 29.93 0.00 0.00 3.18
4415 5172 2.759538 TTTACAAAACGGCGTCCTTG 57.240 45.000 24.66 24.66 0.00 3.61
4416 5173 3.566742 AGATTTTACAAAACGGCGTCCTT 59.433 39.130 15.17 7.32 0.00 3.36
4419 5176 6.103222 AGATAGATTTTACAAAACGGCGTC 57.897 37.500 15.17 0.00 0.00 5.19
4420 5177 6.815142 AGTAGATAGATTTTACAAAACGGCGT 59.185 34.615 6.77 6.77 0.00 5.68
4421 5178 7.230466 AGTAGATAGATTTTACAAAACGGCG 57.770 36.000 4.80 4.80 0.00 6.46
4422 5179 9.836076 AAAAGTAGATAGATTTTACAAAACGGC 57.164 29.630 0.00 0.00 0.00 5.68
4436 5193 9.017509 TGAAGACGAGGTTTAAAAGTAGATAGA 57.982 33.333 0.00 0.00 0.00 1.98
4437 5194 9.074443 GTGAAGACGAGGTTTAAAAGTAGATAG 57.926 37.037 0.00 0.00 0.00 2.08
4440 5215 6.698766 GTGTGAAGACGAGGTTTAAAAGTAGA 59.301 38.462 0.00 0.00 0.00 2.59
4451 5226 1.883275 CTCAGAGTGTGAAGACGAGGT 59.117 52.381 0.00 0.00 33.60 3.85
4458 5233 1.413382 GTGTCGCTCAGAGTGTGAAG 58.587 55.000 10.85 0.00 33.60 3.02
4462 5237 1.857318 CTCCGTGTCGCTCAGAGTGT 61.857 60.000 10.85 0.00 0.00 3.55
4466 5241 3.749064 GGCTCCGTGTCGCTCAGA 61.749 66.667 0.00 0.00 0.00 3.27
4467 5242 2.842394 AATGGCTCCGTGTCGCTCAG 62.842 60.000 0.00 0.00 0.00 3.35
4478 5253 0.108138 ACGCACTAGTCAATGGCTCC 60.108 55.000 0.00 0.00 0.00 4.70
4491 5270 2.798262 GTCGAACGCGTACGCACT 60.798 61.111 36.44 24.07 45.53 4.40
4502 5281 0.038892 TTACAGGAGCCGTGTCGAAC 60.039 55.000 4.19 0.00 0.00 3.95
4509 5288 3.262405 TCTGGTAAATTTACAGGAGCCGT 59.738 43.478 25.59 0.00 35.37 5.68
4514 5293 7.769044 GCAGTAGATTCTGGTAAATTTACAGGA 59.231 37.037 25.59 19.49 35.37 3.86
4533 5312 3.808728 ACAAAAGCTGAACTGCAGTAGA 58.191 40.909 22.01 8.73 46.62 2.59
4542 5321 6.702282 AGAGAGTTGTACTACAAAAGCTGAAC 59.298 38.462 10.09 0.00 40.15 3.18
4544 5323 6.406692 AGAGAGTTGTACTACAAAAGCTGA 57.593 37.500 10.09 0.00 40.15 4.26
4551 5330 6.464222 CCATCCAAAGAGAGTTGTACTACAA 58.536 40.000 10.09 0.00 35.42 2.41
4555 5334 3.264450 CCCCATCCAAAGAGAGTTGTACT 59.736 47.826 0.00 0.00 0.00 2.73
4556 5335 3.263425 TCCCCATCCAAAGAGAGTTGTAC 59.737 47.826 0.00 0.00 0.00 2.90
4557 5336 3.526899 TCCCCATCCAAAGAGAGTTGTA 58.473 45.455 0.00 0.00 0.00 2.41
4568 5347 1.691434 GTTGCACTTTTCCCCATCCAA 59.309 47.619 0.00 0.00 0.00 3.53
4569 5348 1.337118 GTTGCACTTTTCCCCATCCA 58.663 50.000 0.00 0.00 0.00 3.41
4570 5349 0.243636 CGTTGCACTTTTCCCCATCC 59.756 55.000 0.00 0.00 0.00 3.51
4572 5351 0.827507 AGCGTTGCACTTTTCCCCAT 60.828 50.000 0.00 0.00 0.00 4.00
4573 5352 1.454847 AGCGTTGCACTTTTCCCCA 60.455 52.632 0.00 0.00 0.00 4.96
4577 5363 0.318955 ATGCCAGCGTTGCACTTTTC 60.319 50.000 0.00 0.00 42.38 2.29
4601 5387 1.019278 ATACCAGTTGCGTTCCTGCG 61.019 55.000 0.00 0.00 37.81 5.18
4612 5398 1.740296 GCCGTGCACGATACCAGTT 60.740 57.895 39.10 0.00 43.02 3.16
4613 5399 2.125673 GCCGTGCACGATACCAGT 60.126 61.111 39.10 0.00 43.02 4.00
4614 5400 2.125713 TGCCGTGCACGATACCAG 60.126 61.111 39.10 22.24 43.02 4.00
4655 5445 1.135527 CGGGTTAGTTCGTGGCAGATA 59.864 52.381 0.00 0.00 0.00 1.98
4656 5446 0.108329 CGGGTTAGTTCGTGGCAGAT 60.108 55.000 0.00 0.00 0.00 2.90
4657 5447 1.180456 TCGGGTTAGTTCGTGGCAGA 61.180 55.000 0.00 0.00 0.00 4.26
4658 5448 0.320073 TTCGGGTTAGTTCGTGGCAG 60.320 55.000 0.00 0.00 0.00 4.85
4659 5449 0.600782 GTTCGGGTTAGTTCGTGGCA 60.601 55.000 0.00 0.00 0.00 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.