Multiple sequence alignment - TraesCS7D01G160800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G160800 chr7D 100.000 7568 0 0 1 7568 111049938 111057505 0.000000e+00 13976.0
1 TraesCS7D01G160800 chr7D 98.793 497 6 0 3519 4015 310987778 310988274 0.000000e+00 885.0
2 TraesCS7D01G160800 chr7D 98.101 474 9 0 3541 4014 452447022 452446549 0.000000e+00 826.0
3 TraesCS7D01G160800 chr7D 96.429 504 10 1 3519 4014 128915637 128916140 0.000000e+00 824.0
4 TraesCS7D01G160800 chr7D 85.507 276 39 1 5475 5749 441858379 441858654 3.460000e-73 287.0
5 TraesCS7D01G160800 chr7D 88.785 107 12 0 6427 6533 197927125 197927019 1.710000e-26 132.0
6 TraesCS7D01G160800 chr7D 98.246 57 1 0 2242 2298 111052121 111052177 4.830000e-17 100.0
7 TraesCS7D01G160800 chr7D 98.246 57 1 0 2184 2240 111052179 111052235 4.830000e-17 100.0
8 TraesCS7D01G160800 chr7D 90.769 65 4 2 6705 6769 111057729 111057791 1.350000e-12 86.1
9 TraesCS7D01G160800 chr7D 93.023 43 3 0 7262 7304 111056908 111056866 6.340000e-06 63.9
10 TraesCS7D01G160800 chr7D 93.023 43 3 0 6929 6971 111057241 111057199 6.340000e-06 63.9
11 TraesCS7D01G160800 chr4D 99.126 2516 12 3 1 2511 9318951 9321461 0.000000e+00 4516.0
12 TraesCS7D01G160800 chr4D 98.801 2001 7 2 4015 5999 9322478 9324477 0.000000e+00 3546.0
13 TraesCS7D01G160800 chr4D 99.496 992 4 1 2507 3497 9321495 9322486 0.000000e+00 1803.0
14 TraesCS7D01G160800 chr4D 98.406 502 8 0 3519 4020 375134586 375134085 0.000000e+00 883.0
15 TraesCS7D01G160800 chr4D 96.832 505 8 1 3519 4015 508678768 508679272 0.000000e+00 837.0
16 TraesCS7D01G160800 chr4D 84.116 277 41 3 5475 5749 324843419 324843144 1.620000e-66 265.0
17 TraesCS7D01G160800 chr4D 88.889 108 11 1 6427 6533 119822782 119822889 1.710000e-26 132.0
18 TraesCS7D01G160800 chr4D 98.246 57 1 0 2242 2298 9321134 9321190 4.830000e-17 100.0
19 TraesCS7D01G160800 chr4D 98.246 57 1 0 2184 2240 9321192 9321248 4.830000e-17 100.0
20 TraesCS7D01G160800 chr4D 89.062 64 6 1 5311 5373 40796884 40796821 2.260000e-10 78.7
21 TraesCS7D01G160800 chr7A 88.138 2293 164 51 22 2240 116116344 116118602 0.000000e+00 2628.0
22 TraesCS7D01G160800 chr7A 92.074 1451 68 31 5350 6767 116121504 116122940 0.000000e+00 1999.0
23 TraesCS7D01G160800 chr7A 89.302 1318 69 32 4031 5303 116120148 116121438 0.000000e+00 1587.0
24 TraesCS7D01G160800 chr7A 88.462 806 67 15 2242 3025 116118546 116119347 0.000000e+00 950.0
25 TraesCS7D01G160800 chr7A 89.507 467 36 8 3043 3497 116119681 116120146 5.090000e-161 579.0
26 TraesCS7D01G160800 chr7A 100.000 73 0 0 7496 7568 85736158 85736086 1.320000e-27 135.0
27 TraesCS7D01G160800 chr7B 86.090 1294 100 36 540 1791 70484192 70485447 0.000000e+00 1319.0
28 TraesCS7D01G160800 chr7B 88.716 966 90 11 2549 3497 70486357 70487320 0.000000e+00 1162.0
29 TraesCS7D01G160800 chr7B 86.576 812 69 14 4017 4792 70487314 70488121 0.000000e+00 859.0
30 TraesCS7D01G160800 chr7B 87.425 501 37 16 4816 5310 70488256 70488736 3.090000e-153 553.0
31 TraesCS7D01G160800 chr7B 80.881 795 70 43 6651 7397 70489813 70490573 1.110000e-152 551.0
32 TraesCS7D01G160800 chr7B 89.696 427 31 6 22 445 70483669 70484085 4.020000e-147 532.0
33 TraesCS7D01G160800 chr7B 81.681 595 54 30 5799 6375 70489004 70489561 1.940000e-120 444.0
34 TraesCS7D01G160800 chr7B 89.513 267 26 2 2242 2507 70485513 70485778 3.380000e-88 337.0
35 TraesCS7D01G160800 chr7B 84.727 275 41 1 5476 5749 327383099 327382825 2.690000e-69 274.0
36 TraesCS7D01G160800 chr7B 78.788 132 24 4 6864 6991 590029919 590029788 1.350000e-12 86.1
37 TraesCS7D01G160800 chr7B 86.250 80 7 3 5396 5475 70488792 70488867 4.870000e-12 84.2
38 TraesCS7D01G160800 chr7B 100.000 37 0 0 6706 6742 70519437 70519473 1.360000e-07 69.4
39 TraesCS7D01G160800 chr1D 98.144 485 8 1 3541 4024 286380187 286380671 0.000000e+00 845.0
40 TraesCS7D01G160800 chr2D 96.579 497 17 0 3519 4015 109701538 109701042 0.000000e+00 824.0
41 TraesCS7D01G160800 chr2D 84.838 277 41 1 5475 5750 327559029 327558753 2.080000e-70 278.0
42 TraesCS7D01G160800 chr2D 100.000 73 0 0 7496 7568 594435644 594435572 1.320000e-27 135.0
43 TraesCS7D01G160800 chr2D 97.260 73 2 0 7496 7568 103024643 103024571 2.870000e-24 124.0
44 TraesCS7D01G160800 chr2D 93.651 63 4 0 5311 5373 494650923 494650861 2.250000e-15 95.3
45 TraesCS7D01G160800 chr2D 96.875 32 1 0 5351 5382 597960647 597960616 4.000000e-03 54.7
46 TraesCS7D01G160800 chr5D 96.371 496 18 0 3519 4014 310693262 310693757 0.000000e+00 817.0
47 TraesCS7D01G160800 chr5D 83.696 276 44 1 5475 5749 375639584 375639859 7.530000e-65 259.0
48 TraesCS7D01G160800 chr5D 98.571 70 1 0 7499 7568 124358046 124357977 2.870000e-24 124.0
49 TraesCS7D01G160800 chr5D 82.270 141 23 2 6864 7003 49664168 49664029 3.710000e-23 121.0
50 TraesCS7D01G160800 chr5D 85.345 116 15 2 6864 6977 392073500 392073385 1.330000e-22 119.0
51 TraesCS7D01G160800 chr3A 95.146 515 16 2 3510 4016 11078374 11077861 0.000000e+00 804.0
52 TraesCS7D01G160800 chr3A 88.288 111 12 1 6423 6533 671139433 671139542 1.710000e-26 132.0
53 TraesCS7D01G160800 chr5A 84.058 276 43 1 5475 5749 526587784 526587509 1.620000e-66 265.0
54 TraesCS7D01G160800 chr5A 83.085 201 31 3 232 431 545973389 545973191 6.030000e-41 180.0
55 TraesCS7D01G160800 chr5A 88.785 107 12 0 6427 6533 321920748 321920642 1.710000e-26 132.0
56 TraesCS7D01G160800 chr5A 98.630 73 1 0 7496 7568 573744094 573744022 6.160000e-26 130.0
57 TraesCS7D01G160800 chr5A 97.260 73 2 0 7496 7568 59018607 59018535 2.870000e-24 124.0
58 TraesCS7D01G160800 chr5A 80.142 141 26 2 6864 7003 38968516 38968377 3.740000e-18 104.0
59 TraesCS7D01G160800 chr3D 84.000 275 43 1 5476 5749 440238473 440238199 5.820000e-66 263.0
60 TraesCS7D01G160800 chr3D 89.189 111 11 1 6423 6533 535782550 535782659 3.680000e-28 137.0
61 TraesCS7D01G160800 chr5B 80.195 308 48 7 478 776 519614219 519613916 1.280000e-52 219.0
62 TraesCS7D01G160800 chr5B 88.785 107 12 0 6427 6533 503219595 503219489 1.710000e-26 132.0
63 TraesCS7D01G160800 chr1A 89.720 107 11 0 6427 6533 297698267 297698373 3.680000e-28 137.0
64 TraesCS7D01G160800 chr6D 89.423 104 11 0 6430 6533 27511280 27511177 1.710000e-26 132.0
65 TraesCS7D01G160800 chr2A 97.260 73 2 0 7496 7568 547783456 547783528 2.870000e-24 124.0
66 TraesCS7D01G160800 chr2A 93.846 65 2 2 5311 5373 73540660 73540724 6.250000e-16 97.1
67 TraesCS7D01G160800 chr2A 93.651 63 4 0 5311 5373 639061653 639061715 2.250000e-15 95.3
68 TraesCS7D01G160800 chr2A 81.356 118 16 1 6994 7105 499491848 499491731 2.910000e-14 91.6
69 TraesCS7D01G160800 chr2A 91.045 67 3 1 5315 5378 173785033 173784967 3.760000e-13 87.9
70 TraesCS7D01G160800 chr2A 95.556 45 2 0 5304 5348 731542695 731542739 1.050000e-08 73.1
71 TraesCS7D01G160800 chr2A 93.750 48 2 1 5302 5348 745094753 745094706 3.790000e-08 71.3
72 TraesCS7D01G160800 chr4B 95.890 73 3 0 7496 7568 449659498 449659570 1.330000e-22 119.0
73 TraesCS7D01G160800 chr4B 95.890 73 3 0 7496 7568 514050987 514050915 1.330000e-22 119.0
74 TraesCS7D01G160800 chr4B 84.722 72 4 3 5318 5383 35022540 35022470 1.760000e-06 65.8
75 TraesCS7D01G160800 chr4A 92.157 51 4 0 7313 7363 65661702 65661652 1.050000e-08 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G160800 chr7D 111049938 111057505 7567 False 13976.000000 13976 100.000000 1 7568 1 chr7D.!!$F1 7567
1 TraesCS7D01G160800 chr7D 128915637 128916140 503 False 824.000000 824 96.429000 3519 4014 1 chr7D.!!$F3 495
2 TraesCS7D01G160800 chr4D 9318951 9324477 5526 False 2013.000000 4516 98.783000 1 5999 5 chr4D.!!$F3 5998
3 TraesCS7D01G160800 chr4D 375134085 375134586 501 True 883.000000 883 98.406000 3519 4020 1 chr4D.!!$R3 501
4 TraesCS7D01G160800 chr4D 508678768 508679272 504 False 837.000000 837 96.832000 3519 4015 1 chr4D.!!$F2 496
5 TraesCS7D01G160800 chr7A 116116344 116122940 6596 False 1548.600000 2628 89.496600 22 6767 5 chr7A.!!$F1 6745
6 TraesCS7D01G160800 chr7B 70483669 70490573 6904 False 649.022222 1319 86.314222 22 7397 9 chr7B.!!$F2 7375
7 TraesCS7D01G160800 chr3A 11077861 11078374 513 True 804.000000 804 95.146000 3510 4016 1 chr3A.!!$R1 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
701 761 0.314302 GGTACACGGCTATGCGAGAT 59.686 55.000 0.00 0.0 0.0 2.75 F
890 955 0.390860 CGGGCTCTTATGTGCTAGCT 59.609 55.000 17.23 0.0 35.3 3.32 F
2693 3379 1.202580 GCACAGGACTCTCAACAGTGT 60.203 52.381 0.00 0.0 0.0 3.55 F
3713 4743 0.035152 TGTGATCATGTGGGGACTGC 60.035 55.000 0.00 0.0 0.0 4.40 F
3967 4997 0.606401 TCAAGCCAGCAAGCCACTAC 60.606 55.000 0.00 0.0 0.0 2.73 F
6212 7526 3.501062 CAGTGCAAGATCATCAGTGTTGT 59.499 43.478 0.00 0.0 0.0 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2693 3379 7.343357 AGTGCTTATAAACTGGCTTATAACCA 58.657 34.615 6.61 6.61 32.72 3.67 R
3497 4519 2.163818 ATCGGCGACTCAAAAACAGA 57.836 45.000 13.76 0.00 0.00 3.41 R
3743 4773 1.425066 CACATATATGGCCCACCCTGT 59.575 52.381 16.96 0.00 33.59 4.00 R
6211 7525 0.107831 TTCACCCACTGCCAGTGTAC 59.892 55.000 22.54 0.00 44.50 2.90 R
6214 7528 1.003580 AGTATTCACCCACTGCCAGTG 59.996 52.381 18.02 18.02 45.53 3.66 R
7503 8928 0.036952 ACCATGCCTTGACTGAGTCG 60.037 55.000 8.23 0.00 34.95 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 128 3.292492 AGTCAAGGTCCGGTTTCTTTT 57.708 42.857 0.00 0.00 0.00 2.27
701 761 0.314302 GGTACACGGCTATGCGAGAT 59.686 55.000 0.00 0.00 0.00 2.75
889 954 0.601311 CCGGGCTCTTATGTGCTAGC 60.601 60.000 8.10 8.10 33.63 3.42
890 955 0.390860 CGGGCTCTTATGTGCTAGCT 59.609 55.000 17.23 0.00 35.30 3.32
891 956 1.613925 CGGGCTCTTATGTGCTAGCTA 59.386 52.381 17.23 5.45 35.30 3.32
892 957 2.035961 CGGGCTCTTATGTGCTAGCTAA 59.964 50.000 17.23 5.53 35.30 3.09
2693 3379 1.202580 GCACAGGACTCTCAACAGTGT 60.203 52.381 0.00 0.00 0.00 3.55
3500 4522 9.877178 AGTCCTTTTGTACTGTTATAATCTCTG 57.123 33.333 0.00 0.00 0.00 3.35
3501 4523 9.654663 GTCCTTTTGTACTGTTATAATCTCTGT 57.345 33.333 0.00 0.00 0.00 3.41
3713 4743 0.035152 TGTGATCATGTGGGGACTGC 60.035 55.000 0.00 0.00 0.00 4.40
3888 4918 3.856521 GCTGTATATCTATGTGCTCTGCG 59.143 47.826 0.00 0.00 0.00 5.18
3967 4997 0.606401 TCAAGCCAGCAAGCCACTAC 60.606 55.000 0.00 0.00 0.00 2.73
4020 5050 5.048573 GGCGACTCAAAAACCTTGGTTATAA 60.049 40.000 5.38 0.00 0.00 0.98
4021 5051 6.349860 GGCGACTCAAAAACCTTGGTTATAAT 60.350 38.462 5.38 0.00 0.00 1.28
4022 5052 6.745907 GCGACTCAAAAACCTTGGTTATAATC 59.254 38.462 5.38 0.00 0.00 1.75
5260 6471 6.648879 TCTTTTATGAACCCCTCAAGTTTG 57.351 37.500 0.00 0.00 37.67 2.93
6123 7437 5.750547 AGCATCATCATGTAACTTCACTACG 59.249 40.000 0.00 0.00 31.86 3.51
6210 7524 3.750130 GTCAGTGCAAGATCATCAGTGTT 59.250 43.478 13.03 0.00 33.95 3.32
6211 7525 3.749609 TCAGTGCAAGATCATCAGTGTTG 59.250 43.478 13.03 0.00 33.95 3.33
6212 7526 3.501062 CAGTGCAAGATCATCAGTGTTGT 59.499 43.478 0.00 0.00 0.00 3.32
6214 7528 4.692625 AGTGCAAGATCATCAGTGTTGTAC 59.307 41.667 0.00 0.00 34.93 2.90
6248 7573 7.807907 GTGGGTGAATACTGAATAAACAAGTTG 59.192 37.037 0.00 0.00 0.00 3.16
6286 7611 4.015872 TGGGCGATATTATTTGGAGGAC 57.984 45.455 0.00 0.00 0.00 3.85
6303 7628 4.336280 GAGGACAGGGAATAAAAGCTTGT 58.664 43.478 0.00 0.00 0.00 3.16
6311 7636 5.316327 GGAATAAAAGCTTGTTCCAGAGG 57.684 43.478 23.39 0.00 46.74 3.69
6312 7637 4.767409 GGAATAAAAGCTTGTTCCAGAGGT 59.233 41.667 23.39 0.00 46.74 3.85
6313 7638 5.243954 GGAATAAAAGCTTGTTCCAGAGGTT 59.756 40.000 23.39 5.98 46.74 3.50
6337 7671 2.558359 GGGGAGTGGATCTTGTTTTGTG 59.442 50.000 0.00 0.00 0.00 3.33
6355 7689 2.350192 TGTGTCTACTGCGTTGTTGTTG 59.650 45.455 0.00 0.00 0.00 3.33
6357 7691 2.350192 TGTCTACTGCGTTGTTGTTGTG 59.650 45.455 0.00 0.00 0.00 3.33
6358 7692 2.350498 GTCTACTGCGTTGTTGTTGTGT 59.650 45.455 0.00 0.00 0.00 3.72
6359 7693 3.004171 TCTACTGCGTTGTTGTTGTGTT 58.996 40.909 0.00 0.00 0.00 3.32
6360 7694 2.715737 ACTGCGTTGTTGTTGTGTTT 57.284 40.000 0.00 0.00 0.00 2.83
6361 7695 3.833545 ACTGCGTTGTTGTTGTGTTTA 57.166 38.095 0.00 0.00 0.00 2.01
6362 7696 3.753842 ACTGCGTTGTTGTTGTGTTTAG 58.246 40.909 0.00 0.00 0.00 1.85
6363 7697 3.189702 ACTGCGTTGTTGTTGTGTTTAGT 59.810 39.130 0.00 0.00 0.00 2.24
6364 7698 3.493272 TGCGTTGTTGTTGTGTTTAGTG 58.507 40.909 0.00 0.00 0.00 2.74
6365 7699 3.058155 TGCGTTGTTGTTGTGTTTAGTGT 60.058 39.130 0.00 0.00 0.00 3.55
6374 7708 7.591795 TGTTGTTGTGTTTAGTGTTGTTAGTTG 59.408 33.333 0.00 0.00 0.00 3.16
6387 7721 3.892284 TGTTAGTTGCTCCCTTTGTTCA 58.108 40.909 0.00 0.00 0.00 3.18
6391 7725 3.096092 AGTTGCTCCCTTTGTTCACAAA 58.904 40.909 5.05 5.05 42.90 2.83
6409 7752 5.986741 TCACAAAGTTAATCAGCGACAGTTA 59.013 36.000 0.00 0.00 0.00 2.24
6421 7770 3.060602 GCGACAGTTAATATGAGGGAGC 58.939 50.000 0.00 0.00 0.00 4.70
6468 7817 6.962678 GTGTATAGACGTGTTTTTGTGTGTTT 59.037 34.615 0.00 0.00 0.00 2.83
6474 7823 4.207429 ACGTGTTTTTGTGTGTTTGTTCAC 59.793 37.500 0.00 0.00 38.63 3.18
6476 7825 5.386933 CGTGTTTTTGTGTGTTTGTTCACTC 60.387 40.000 0.00 0.00 38.90 3.51
6496 7845 5.063186 CACTCATTTCAGTCTGTATGCAGTC 59.937 44.000 10.80 5.31 43.05 3.51
6592 7942 1.445238 GACTGTCGAGTCTGCCTGC 60.445 63.158 0.00 0.00 44.73 4.85
6682 8063 3.359523 CTGCAGCAGAGCCGCAAA 61.360 61.111 18.42 0.00 34.75 3.68
6688 8069 2.690778 GCAGAGCCGCAAAACCGAT 61.691 57.895 0.00 0.00 0.00 4.18
6690 8071 1.745489 AGAGCCGCAAAACCGATCC 60.745 57.895 0.00 0.00 0.00 3.36
6753 8144 2.000701 TCCGTCCTGGGCCATTCAT 61.001 57.895 6.72 0.00 38.76 2.57
6769 8160 5.625197 GCCATTCATGCAAGGAGTAAAACAT 60.625 40.000 0.00 0.00 0.00 2.71
6770 8161 6.400568 CCATTCATGCAAGGAGTAAAACATT 58.599 36.000 0.00 0.00 0.00 2.71
6771 8162 6.311935 CCATTCATGCAAGGAGTAAAACATTG 59.688 38.462 0.00 0.00 33.18 2.82
6772 8163 6.403866 TTCATGCAAGGAGTAAAACATTGT 57.596 33.333 0.00 0.00 32.73 2.71
6774 8165 4.846779 TGCAAGGAGTAAAACATTGTCC 57.153 40.909 0.00 0.00 32.73 4.02
6777 8168 5.221224 TGCAAGGAGTAAAACATTGTCCAAG 60.221 40.000 0.00 0.00 32.73 3.61
6778 8169 5.009610 GCAAGGAGTAAAACATTGTCCAAGA 59.990 40.000 0.00 0.00 32.73 3.02
6779 8170 6.438763 CAAGGAGTAAAACATTGTCCAAGAC 58.561 40.000 0.00 0.00 0.00 3.01
6783 8179 5.120399 AGTAAAACATTGTCCAAGACGACA 58.880 37.500 0.00 0.00 40.98 4.35
6817 8213 9.169468 CATAATTATACAAACAGAAATGTCGGC 57.831 33.333 0.00 0.00 0.00 5.54
6819 8215 1.686355 ACAAACAGAAATGTCGGCCA 58.314 45.000 2.24 0.00 0.00 5.36
6840 8237 0.544697 TCCGGTAATTCTTCCAGCCC 59.455 55.000 0.00 0.00 0.00 5.19
6841 8238 0.814010 CCGGTAATTCTTCCAGCCCG 60.814 60.000 0.00 0.00 0.00 6.13
6842 8239 0.814010 CGGTAATTCTTCCAGCCCGG 60.814 60.000 0.00 0.00 0.00 5.73
6844 8241 0.393808 GTAATTCTTCCAGCCCGGCA 60.394 55.000 13.15 0.00 33.14 5.69
6845 8242 0.329931 TAATTCTTCCAGCCCGGCAA 59.670 50.000 13.15 0.00 33.14 4.52
6846 8243 1.250840 AATTCTTCCAGCCCGGCAAC 61.251 55.000 13.15 0.00 33.14 4.17
6847 8244 2.424842 ATTCTTCCAGCCCGGCAACA 62.425 55.000 13.15 0.00 33.14 3.33
6848 8245 2.361610 CTTCCAGCCCGGCAACAT 60.362 61.111 13.15 0.00 33.14 2.71
6849 8246 1.077787 CTTCCAGCCCGGCAACATA 60.078 57.895 13.15 0.00 33.14 2.29
6850 8247 1.376609 CTTCCAGCCCGGCAACATAC 61.377 60.000 13.15 0.00 33.14 2.39
6851 8248 2.045438 CCAGCCCGGCAACATACA 60.045 61.111 13.15 0.00 0.00 2.29
6852 8249 2.406616 CCAGCCCGGCAACATACAC 61.407 63.158 13.15 0.00 0.00 2.90
6853 8250 1.673993 CAGCCCGGCAACATACACA 60.674 57.895 13.15 0.00 0.00 3.72
6854 8251 1.674322 AGCCCGGCAACATACACAC 60.674 57.895 13.15 0.00 0.00 3.82
6855 8252 2.696759 GCCCGGCAACATACACACC 61.697 63.158 3.91 0.00 0.00 4.16
6856 8253 1.002624 CCCGGCAACATACACACCT 60.003 57.895 0.00 0.00 0.00 4.00
6857 8254 0.608035 CCCGGCAACATACACACCTT 60.608 55.000 0.00 0.00 0.00 3.50
6858 8255 0.802494 CCGGCAACATACACACCTTC 59.198 55.000 0.00 0.00 0.00 3.46
6859 8256 1.610624 CCGGCAACATACACACCTTCT 60.611 52.381 0.00 0.00 0.00 2.85
6860 8257 1.732259 CGGCAACATACACACCTTCTC 59.268 52.381 0.00 0.00 0.00 2.87
6861 8258 2.612972 CGGCAACATACACACCTTCTCT 60.613 50.000 0.00 0.00 0.00 3.10
6862 8259 3.368013 CGGCAACATACACACCTTCTCTA 60.368 47.826 0.00 0.00 0.00 2.43
6881 8278 5.721960 TCTCTAACCACTTTGAAGGCTAGAT 59.278 40.000 0.00 0.00 0.00 1.98
6905 8303 3.927142 AGCAGAAACACTACGCTACATTC 59.073 43.478 0.00 0.00 0.00 2.67
6911 8309 5.607119 AACACTACGCTACATTCCTTTTG 57.393 39.130 0.00 0.00 0.00 2.44
6912 8310 3.435671 ACACTACGCTACATTCCTTTTGC 59.564 43.478 0.00 0.00 0.00 3.68
6913 8311 3.435327 CACTACGCTACATTCCTTTTGCA 59.565 43.478 0.00 0.00 0.00 4.08
6914 8312 4.069304 ACTACGCTACATTCCTTTTGCAA 58.931 39.130 0.00 0.00 0.00 4.08
6916 8314 4.314740 ACGCTACATTCCTTTTGCAAAA 57.685 36.364 22.61 22.61 0.00 2.44
6968 8368 4.404507 AAAACACTGATCGACGGATTTG 57.595 40.909 0.00 0.00 31.51 2.32
6972 8372 1.212616 CTGATCGACGGATTTGGCTC 58.787 55.000 0.00 0.00 31.51 4.70
6974 8374 2.028876 TGATCGACGGATTTGGCTCTA 58.971 47.619 0.00 0.00 31.51 2.43
7001 8402 2.668457 CGCGTTTATGATAGATGGAGCC 59.332 50.000 0.00 0.00 0.00 4.70
7003 8404 3.557054 GCGTTTATGATAGATGGAGCCCA 60.557 47.826 0.00 0.00 38.19 5.36
7025 8426 3.923354 GTCAGACTGACATGGCACT 57.077 52.632 27.15 0.00 46.22 4.40
7026 8427 1.436600 GTCAGACTGACATGGCACTG 58.563 55.000 27.15 12.02 46.22 3.66
7042 8443 4.818005 TGGCACTGCTTAATGTCTCATATG 59.182 41.667 0.00 0.00 0.00 1.78
7051 8452 2.502213 TGTCTCATATGTAACGGCGG 57.498 50.000 13.24 0.00 0.00 6.13
7069 8470 2.096174 GCGGCGTTTGGTAATGTTATCA 59.904 45.455 9.37 0.00 0.00 2.15
7081 8492 5.833131 GGTAATGTTATCATCATGTGGGGTT 59.167 40.000 0.00 0.00 32.56 4.11
7087 8498 1.004628 TCATCATGTGGGGTTCACCTG 59.995 52.381 0.00 0.00 45.48 4.00
7152 8564 3.744559 GCAACAACGCCTGAGGAA 58.255 55.556 0.65 0.00 0.00 3.36
7153 8565 2.029743 GCAACAACGCCTGAGGAAA 58.970 52.632 0.65 0.00 0.00 3.13
7170 8582 3.553095 AAAGTGCAGCTCGTCCCCC 62.553 63.158 0.00 0.00 0.00 5.40
7183 8595 1.152312 TCCCCCGAGCTATTCTCCC 60.152 63.158 0.00 0.00 38.62 4.30
7186 8598 2.049985 CCGAGCTATTCTCCCGCG 60.050 66.667 0.00 0.00 38.62 6.46
7192 8604 4.280494 TATTCTCCCGCGCGCCTC 62.280 66.667 27.36 0.00 0.00 4.70
7211 8623 1.304952 CTCCTCCCTCTGACCGAGT 59.695 63.158 0.00 0.00 38.11 4.18
7214 8626 1.680651 CTCCCTCTGACCGAGTGCT 60.681 63.158 0.00 0.00 38.11 4.40
7223 8635 4.864334 CCGAGTGCTGCCCATCCC 62.864 72.222 0.00 0.00 0.00 3.85
7271 8683 2.746277 GACCTGCGCCAAATCCGT 60.746 61.111 4.18 0.00 0.00 4.69
7275 8687 2.125310 TGCGCCAAATCCGTCGAT 60.125 55.556 4.18 0.00 0.00 3.59
7361 8786 5.471797 TGATGGTTTCTTGCAATTTACTCGA 59.528 36.000 0.00 0.00 0.00 4.04
7368 8793 3.266510 TGCAATTTACTCGATGGAGCT 57.733 42.857 4.41 0.00 44.48 4.09
7372 8797 4.494855 GCAATTTACTCGATGGAGCTGTTC 60.495 45.833 4.41 0.00 44.48 3.18
7393 8818 1.065551 GTCCAGTCAAACAACAGCCAC 59.934 52.381 0.00 0.00 0.00 5.01
7397 8822 2.101249 CAGTCAAACAACAGCCACCATT 59.899 45.455 0.00 0.00 0.00 3.16
7398 8823 3.317711 CAGTCAAACAACAGCCACCATTA 59.682 43.478 0.00 0.00 0.00 1.90
7399 8824 3.317993 AGTCAAACAACAGCCACCATTAC 59.682 43.478 0.00 0.00 0.00 1.89
7400 8825 3.067461 GTCAAACAACAGCCACCATTACA 59.933 43.478 0.00 0.00 0.00 2.41
7401 8826 3.894427 TCAAACAACAGCCACCATTACAT 59.106 39.130 0.00 0.00 0.00 2.29
7402 8827 3.940209 AACAACAGCCACCATTACATG 57.060 42.857 0.00 0.00 0.00 3.21
7403 8828 3.153369 ACAACAGCCACCATTACATGA 57.847 42.857 0.00 0.00 0.00 3.07
7404 8829 3.700538 ACAACAGCCACCATTACATGAT 58.299 40.909 0.00 0.00 0.00 2.45
7405 8830 3.444742 ACAACAGCCACCATTACATGATG 59.555 43.478 0.00 0.00 0.00 3.07
7406 8831 2.026641 ACAGCCACCATTACATGATGC 58.973 47.619 0.00 0.00 0.00 3.91
7407 8832 2.304092 CAGCCACCATTACATGATGCT 58.696 47.619 0.00 0.00 0.00 3.79
7408 8833 2.034179 CAGCCACCATTACATGATGCTG 59.966 50.000 0.00 0.00 38.54 4.41
7409 8834 1.338973 GCCACCATTACATGATGCTGG 59.661 52.381 0.00 1.96 36.34 4.85
7410 8835 1.338973 CCACCATTACATGATGCTGGC 59.661 52.381 0.00 0.00 28.85 4.85
7411 8836 2.025898 CACCATTACATGATGCTGGCA 58.974 47.619 0.00 0.00 0.00 4.92
7412 8837 2.026641 ACCATTACATGATGCTGGCAC 58.973 47.619 0.00 0.00 0.00 5.01
7413 8838 1.002142 CCATTACATGATGCTGGCACG 60.002 52.381 0.00 0.00 0.00 5.34
7414 8839 1.941975 CATTACATGATGCTGGCACGA 59.058 47.619 0.00 0.00 0.00 4.35
7415 8840 1.655484 TTACATGATGCTGGCACGAG 58.345 50.000 0.00 0.00 0.00 4.18
7416 8841 0.179076 TACATGATGCTGGCACGAGG 60.179 55.000 0.00 0.00 0.00 4.63
7417 8842 1.450848 CATGATGCTGGCACGAGGT 60.451 57.895 0.00 0.00 0.00 3.85
7418 8843 0.179076 CATGATGCTGGCACGAGGTA 60.179 55.000 0.00 0.00 0.00 3.08
7419 8844 0.541392 ATGATGCTGGCACGAGGTAA 59.459 50.000 0.00 0.00 0.00 2.85
7420 8845 0.541392 TGATGCTGGCACGAGGTAAT 59.459 50.000 0.00 0.00 0.00 1.89
7421 8846 1.221414 GATGCTGGCACGAGGTAATC 58.779 55.000 0.00 0.00 0.00 1.75
7422 8847 0.541392 ATGCTGGCACGAGGTAATCA 59.459 50.000 0.00 0.00 0.00 2.57
7423 8848 0.323302 TGCTGGCACGAGGTAATCAA 59.677 50.000 0.00 0.00 0.00 2.57
7424 8849 1.271108 TGCTGGCACGAGGTAATCAAA 60.271 47.619 0.00 0.00 0.00 2.69
7425 8850 1.398390 GCTGGCACGAGGTAATCAAAG 59.602 52.381 0.00 0.00 0.00 2.77
7426 8851 1.398390 CTGGCACGAGGTAATCAAAGC 59.602 52.381 0.00 0.00 0.00 3.51
7427 8852 1.003118 TGGCACGAGGTAATCAAAGCT 59.997 47.619 0.00 0.00 0.00 3.74
7428 8853 1.398390 GGCACGAGGTAATCAAAGCTG 59.602 52.381 0.00 0.00 0.00 4.24
7429 8854 1.202076 GCACGAGGTAATCAAAGCTGC 60.202 52.381 0.00 0.00 0.00 5.25
7430 8855 1.398390 CACGAGGTAATCAAAGCTGCC 59.602 52.381 0.00 0.00 0.00 4.85
7431 8856 1.017387 CGAGGTAATCAAAGCTGCCC 58.983 55.000 0.00 0.00 0.00 5.36
7432 8857 1.393603 GAGGTAATCAAAGCTGCCCC 58.606 55.000 0.00 0.00 0.00 5.80
7433 8858 0.704076 AGGTAATCAAAGCTGCCCCA 59.296 50.000 0.00 0.00 0.00 4.96
7434 8859 1.106285 GGTAATCAAAGCTGCCCCAG 58.894 55.000 0.00 0.00 34.12 4.45
7443 8868 2.113774 CTGCCCCAGCACACTCAA 59.886 61.111 0.00 0.00 46.52 3.02
7444 8869 1.529010 CTGCCCCAGCACACTCAAA 60.529 57.895 0.00 0.00 46.52 2.69
7445 8870 1.076412 TGCCCCAGCACACTCAAAA 60.076 52.632 0.00 0.00 46.52 2.44
7446 8871 1.363807 GCCCCAGCACACTCAAAAC 59.636 57.895 0.00 0.00 39.53 2.43
7447 8872 1.654220 CCCCAGCACACTCAAAACG 59.346 57.895 0.00 0.00 0.00 3.60
7448 8873 1.008538 CCCAGCACACTCAAAACGC 60.009 57.895 0.00 0.00 0.00 4.84
7449 8874 1.369209 CCAGCACACTCAAAACGCG 60.369 57.895 3.53 3.53 0.00 6.01
7450 8875 2.005537 CAGCACACTCAAAACGCGC 61.006 57.895 5.73 0.00 0.00 6.86
7451 8876 2.725815 GCACACTCAAAACGCGCC 60.726 61.111 5.73 0.00 0.00 6.53
7452 8877 2.051345 CACACTCAAAACGCGCCC 60.051 61.111 5.73 0.00 0.00 6.13
7453 8878 2.515057 ACACTCAAAACGCGCCCA 60.515 55.556 5.73 0.00 0.00 5.36
7454 8879 2.252260 CACTCAAAACGCGCCCAG 59.748 61.111 5.73 0.00 0.00 4.45
7455 8880 2.203153 ACTCAAAACGCGCCCAGT 60.203 55.556 5.73 0.00 0.00 4.00
7456 8881 1.070105 ACTCAAAACGCGCCCAGTA 59.930 52.632 5.73 0.00 0.00 2.74
7457 8882 1.226030 ACTCAAAACGCGCCCAGTAC 61.226 55.000 5.73 0.00 0.00 2.73
7458 8883 1.225376 CTCAAAACGCGCCCAGTACA 61.225 55.000 5.73 0.00 0.00 2.90
7459 8884 0.814410 TCAAAACGCGCCCAGTACAA 60.814 50.000 5.73 0.00 0.00 2.41
7460 8885 0.659123 CAAAACGCGCCCAGTACAAC 60.659 55.000 5.73 0.00 0.00 3.32
7461 8886 1.788067 AAAACGCGCCCAGTACAACC 61.788 55.000 5.73 0.00 0.00 3.77
7462 8887 2.944409 AAACGCGCCCAGTACAACCA 62.944 55.000 5.73 0.00 0.00 3.67
7463 8888 3.419759 CGCGCCCAGTACAACCAC 61.420 66.667 0.00 0.00 0.00 4.16
7464 8889 3.053896 GCGCCCAGTACAACCACC 61.054 66.667 0.00 0.00 0.00 4.61
7465 8890 2.740826 CGCCCAGTACAACCACCG 60.741 66.667 0.00 0.00 0.00 4.94
7466 8891 2.428622 GCCCAGTACAACCACCGT 59.571 61.111 0.00 0.00 0.00 4.83
7467 8892 1.672898 GCCCAGTACAACCACCGTA 59.327 57.895 0.00 0.00 0.00 4.02
7468 8893 0.390735 GCCCAGTACAACCACCGTAG 60.391 60.000 0.00 0.00 0.00 3.51
7469 8894 0.390735 CCCAGTACAACCACCGTAGC 60.391 60.000 0.00 0.00 0.00 3.58
7470 8895 0.319083 CCAGTACAACCACCGTAGCA 59.681 55.000 0.00 0.00 0.00 3.49
7471 8896 1.425412 CAGTACAACCACCGTAGCAC 58.575 55.000 0.00 0.00 0.00 4.40
7472 8897 1.000506 CAGTACAACCACCGTAGCACT 59.999 52.381 0.00 0.00 0.00 4.40
7473 8898 2.229543 CAGTACAACCACCGTAGCACTA 59.770 50.000 0.00 0.00 0.00 2.74
7474 8899 2.229784 AGTACAACCACCGTAGCACTAC 59.770 50.000 0.00 0.00 0.00 2.73
7475 8900 1.042229 ACAACCACCGTAGCACTACA 58.958 50.000 8.45 0.00 35.87 2.74
7476 8901 1.269936 ACAACCACCGTAGCACTACAC 60.270 52.381 8.45 0.00 35.87 2.90
7477 8902 1.000506 CAACCACCGTAGCACTACACT 59.999 52.381 8.45 0.00 35.87 3.55
7478 8903 2.205022 ACCACCGTAGCACTACACTA 57.795 50.000 8.45 0.00 35.87 2.74
7479 8904 2.089980 ACCACCGTAGCACTACACTAG 58.910 52.381 8.45 0.00 35.87 2.57
7480 8905 2.290514 ACCACCGTAGCACTACACTAGA 60.291 50.000 8.45 0.00 35.87 2.43
7481 8906 2.355132 CCACCGTAGCACTACACTAGAG 59.645 54.545 8.45 0.00 35.87 2.43
7482 8907 2.015587 ACCGTAGCACTACACTAGAGC 58.984 52.381 8.45 0.00 41.80 4.09
7483 8908 1.334243 CCGTAGCACTACACTAGAGCC 59.666 57.143 8.45 0.00 42.34 4.70
7484 8909 2.014857 CGTAGCACTACACTAGAGCCA 58.985 52.381 8.45 0.00 42.34 4.75
7485 8910 2.223294 CGTAGCACTACACTAGAGCCAC 60.223 54.545 8.45 0.00 42.34 5.01
7486 8911 1.924731 AGCACTACACTAGAGCCACA 58.075 50.000 0.00 0.00 42.34 4.17
7487 8912 2.248248 AGCACTACACTAGAGCCACAA 58.752 47.619 0.00 0.00 42.34 3.33
7488 8913 2.632996 AGCACTACACTAGAGCCACAAA 59.367 45.455 0.00 0.00 42.34 2.83
7489 8914 2.737252 GCACTACACTAGAGCCACAAAC 59.263 50.000 0.00 0.00 36.56 2.93
7490 8915 3.802329 GCACTACACTAGAGCCACAAACA 60.802 47.826 0.00 0.00 36.56 2.83
7491 8916 3.741344 CACTACACTAGAGCCACAAACAC 59.259 47.826 0.00 0.00 0.00 3.32
7492 8917 2.256117 ACACTAGAGCCACAAACACC 57.744 50.000 0.00 0.00 0.00 4.16
7493 8918 1.148310 CACTAGAGCCACAAACACCG 58.852 55.000 0.00 0.00 0.00 4.94
7494 8919 0.602905 ACTAGAGCCACAAACACCGC 60.603 55.000 0.00 0.00 0.00 5.68
7495 8920 0.602638 CTAGAGCCACAAACACCGCA 60.603 55.000 0.00 0.00 0.00 5.69
7496 8921 0.602638 TAGAGCCACAAACACCGCAG 60.603 55.000 0.00 0.00 0.00 5.18
7497 8922 3.542629 GAGCCACAAACACCGCAGC 62.543 63.158 0.00 0.00 0.00 5.25
7498 8923 3.595758 GCCACAAACACCGCAGCT 61.596 61.111 0.00 0.00 0.00 4.24
7499 8924 2.639286 CCACAAACACCGCAGCTC 59.361 61.111 0.00 0.00 0.00 4.09
7500 8925 2.249309 CACAAACACCGCAGCTCG 59.751 61.111 0.00 0.00 38.08 5.03
7501 8926 2.203015 ACAAACACCGCAGCTCGT 60.203 55.556 5.15 0.00 36.19 4.18
7502 8927 1.817941 ACAAACACCGCAGCTCGTT 60.818 52.632 5.15 0.00 36.19 3.85
7503 8928 1.082756 CAAACACCGCAGCTCGTTC 60.083 57.895 5.15 0.00 36.19 3.95
7504 8929 2.594962 AAACACCGCAGCTCGTTCG 61.595 57.895 5.15 0.00 36.19 3.95
7505 8930 2.964438 AAACACCGCAGCTCGTTCGA 62.964 55.000 5.15 0.00 36.19 3.71
7506 8931 3.470567 CACCGCAGCTCGTTCGAC 61.471 66.667 5.15 0.00 36.19 4.20
7507 8932 3.671411 ACCGCAGCTCGTTCGACT 61.671 61.111 5.15 0.00 36.19 4.18
7508 8933 2.876645 CCGCAGCTCGTTCGACTC 60.877 66.667 5.15 0.00 36.19 3.36
7509 8934 2.126850 CGCAGCTCGTTCGACTCA 60.127 61.111 0.00 0.00 0.00 3.41
7510 8935 2.148982 CGCAGCTCGTTCGACTCAG 61.149 63.158 0.00 0.00 0.00 3.35
7511 8936 1.081108 GCAGCTCGTTCGACTCAGT 60.081 57.895 0.00 0.00 0.00 3.41
7512 8937 1.068287 GCAGCTCGTTCGACTCAGTC 61.068 60.000 0.00 0.00 0.00 3.51
7513 8938 0.238553 CAGCTCGTTCGACTCAGTCA 59.761 55.000 5.45 0.00 32.09 3.41
7514 8939 0.952280 AGCTCGTTCGACTCAGTCAA 59.048 50.000 5.45 0.00 32.09 3.18
7515 8940 1.068885 AGCTCGTTCGACTCAGTCAAG 60.069 52.381 5.45 0.00 32.09 3.02
7516 8941 1.970447 CTCGTTCGACTCAGTCAAGG 58.030 55.000 5.45 4.74 32.09 3.61
7517 8942 0.039437 TCGTTCGACTCAGTCAAGGC 60.039 55.000 5.45 0.00 32.09 4.35
7518 8943 0.318699 CGTTCGACTCAGTCAAGGCA 60.319 55.000 5.45 0.00 32.09 4.75
7519 8944 1.670087 CGTTCGACTCAGTCAAGGCAT 60.670 52.381 5.45 0.00 32.09 4.40
7520 8945 1.728971 GTTCGACTCAGTCAAGGCATG 59.271 52.381 5.45 0.00 32.09 4.06
7521 8946 0.247460 TCGACTCAGTCAAGGCATGG 59.753 55.000 5.45 0.00 32.09 3.66
7522 8947 0.036952 CGACTCAGTCAAGGCATGGT 60.037 55.000 5.45 0.00 32.09 3.55
7523 8948 1.446907 GACTCAGTCAAGGCATGGTG 58.553 55.000 0.00 0.00 32.09 4.17
7524 8949 0.037303 ACTCAGTCAAGGCATGGTGG 59.963 55.000 0.00 0.00 0.00 4.61
7525 8950 0.679002 CTCAGTCAAGGCATGGTGGG 60.679 60.000 0.00 0.00 0.00 4.61
7526 8951 2.036256 AGTCAAGGCATGGTGGGC 59.964 61.111 0.00 0.00 0.00 5.36
7527 8952 3.443045 GTCAAGGCATGGTGGGCG 61.443 66.667 0.00 0.00 38.57 6.13
7528 8953 3.645660 TCAAGGCATGGTGGGCGA 61.646 61.111 0.00 0.00 38.57 5.54
7529 8954 3.136123 CAAGGCATGGTGGGCGAG 61.136 66.667 0.00 0.00 38.57 5.03
7535 8960 2.191375 ATGGTGGGCGAGCATGAG 59.809 61.111 13.48 0.00 41.38 2.90
7536 8961 4.783621 TGGTGGGCGAGCATGAGC 62.784 66.667 0.00 0.00 42.56 4.26
7560 8985 3.527641 GGCACCACCAACCGAAAA 58.472 55.556 0.00 0.00 38.86 2.29
7561 8986 1.362355 GGCACCACCAACCGAAAAG 59.638 57.895 0.00 0.00 38.86 2.27
7562 8987 1.388837 GGCACCACCAACCGAAAAGT 61.389 55.000 0.00 0.00 38.86 2.66
7563 8988 0.248866 GCACCACCAACCGAAAAGTG 60.249 55.000 0.00 0.00 0.00 3.16
7564 8989 1.384525 CACCACCAACCGAAAAGTGA 58.615 50.000 0.00 0.00 31.79 3.41
7565 8990 1.746220 CACCACCAACCGAAAAGTGAA 59.254 47.619 0.00 0.00 31.79 3.18
7566 8991 2.021457 ACCACCAACCGAAAAGTGAAG 58.979 47.619 0.00 0.00 31.79 3.02
7567 8992 1.336755 CCACCAACCGAAAAGTGAAGG 59.663 52.381 0.00 0.00 31.79 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 128 8.780249 GTGGTTCAACTATTTTTAGCTACTGAA 58.220 33.333 0.00 0.00 0.00 3.02
447 501 5.296035 GGGGATGGTTGATTAGTAGTTTTCG 59.704 44.000 0.00 0.00 0.00 3.46
2693 3379 7.343357 AGTGCTTATAAACTGGCTTATAACCA 58.657 34.615 6.61 6.61 32.72 3.67
3497 4519 2.163818 ATCGGCGACTCAAAAACAGA 57.836 45.000 13.76 0.00 0.00 3.41
3498 4520 2.969443 AATCGGCGACTCAAAAACAG 57.031 45.000 13.76 0.00 0.00 3.16
3499 4521 3.395639 ACTAATCGGCGACTCAAAAACA 58.604 40.909 13.76 0.00 0.00 2.83
3500 4522 3.481467 CGACTAATCGGCGACTCAAAAAC 60.481 47.826 13.76 0.00 44.99 2.43
3501 4523 2.664568 CGACTAATCGGCGACTCAAAAA 59.335 45.455 13.76 0.00 44.99 1.94
3502 4524 2.256174 CGACTAATCGGCGACTCAAAA 58.744 47.619 13.76 0.00 44.99 2.44
3503 4525 1.904144 CGACTAATCGGCGACTCAAA 58.096 50.000 13.76 0.00 44.99 2.69
3504 4526 3.616935 CGACTAATCGGCGACTCAA 57.383 52.632 13.76 0.00 44.99 3.02
3713 4743 1.668101 CTTCGGTCCTCCTCCTTCCG 61.668 65.000 0.00 0.00 42.12 4.30
3743 4773 1.425066 CACATATATGGCCCACCCTGT 59.575 52.381 16.96 0.00 33.59 4.00
3888 4918 2.280628 GGCACAACAGTACATAGAGCC 58.719 52.381 0.00 0.00 0.00 4.70
4020 5050 7.489160 TGTTCTATACTAGCAATCACAACGAT 58.511 34.615 0.00 0.00 35.12 3.73
4021 5051 6.859017 TGTTCTATACTAGCAATCACAACGA 58.141 36.000 0.00 0.00 0.00 3.85
4022 5052 7.222805 ACATGTTCTATACTAGCAATCACAACG 59.777 37.037 0.00 0.00 0.00 4.10
4433 5493 4.990426 AGGTGTTTAAATTTCATGCTGCAC 59.010 37.500 3.57 0.00 0.00 4.57
5260 6471 9.811995 TTGTTTGTATGACACATAGATACTACC 57.188 33.333 0.00 0.00 36.90 3.18
6123 7437 1.465200 GGGCTCTCAGGGACGATACC 61.465 65.000 0.00 0.00 0.00 2.73
6210 7524 1.051556 TCACCCACTGCCAGTGTACA 61.052 55.000 22.54 1.83 44.50 2.90
6211 7525 0.107831 TTCACCCACTGCCAGTGTAC 59.892 55.000 22.54 0.00 44.50 2.90
6212 7526 1.064003 ATTCACCCACTGCCAGTGTA 58.936 50.000 22.54 3.49 44.50 2.90
6214 7528 1.003580 AGTATTCACCCACTGCCAGTG 59.996 52.381 18.02 18.02 45.53 3.66
6264 7589 4.042809 TGTCCTCCAAATAATATCGCCCAT 59.957 41.667 0.00 0.00 0.00 4.00
6286 7611 4.766891 TCTGGAACAAGCTTTTATTCCCTG 59.233 41.667 22.48 17.31 40.00 4.45
6303 7628 1.144913 CACTCCCCAAAACCTCTGGAA 59.855 52.381 0.00 0.00 35.85 3.53
6308 7633 1.636003 AGATCCACTCCCCAAAACCTC 59.364 52.381 0.00 0.00 0.00 3.85
6311 7636 2.876581 ACAAGATCCACTCCCCAAAAC 58.123 47.619 0.00 0.00 0.00 2.43
6312 7637 3.611025 AACAAGATCCACTCCCCAAAA 57.389 42.857 0.00 0.00 0.00 2.44
6313 7638 3.611025 AAACAAGATCCACTCCCCAAA 57.389 42.857 0.00 0.00 0.00 3.28
6337 7671 2.350498 ACACAACAACAACGCAGTAGAC 59.650 45.455 0.00 0.00 45.00 2.59
6355 7689 5.505159 GGGAGCAACTAACAACACTAAACAC 60.505 44.000 0.00 0.00 0.00 3.32
6357 7691 4.820173 AGGGAGCAACTAACAACACTAAAC 59.180 41.667 0.00 0.00 0.00 2.01
6358 7692 5.043737 AGGGAGCAACTAACAACACTAAA 57.956 39.130 0.00 0.00 0.00 1.85
6359 7693 4.699925 AGGGAGCAACTAACAACACTAA 57.300 40.909 0.00 0.00 0.00 2.24
6360 7694 4.699925 AAGGGAGCAACTAACAACACTA 57.300 40.909 0.00 0.00 0.00 2.74
6361 7695 3.577805 AAGGGAGCAACTAACAACACT 57.422 42.857 0.00 0.00 0.00 3.55
6362 7696 3.380320 ACAAAGGGAGCAACTAACAACAC 59.620 43.478 0.00 0.00 0.00 3.32
6363 7697 3.626930 ACAAAGGGAGCAACTAACAACA 58.373 40.909 0.00 0.00 0.00 3.33
6364 7698 4.097286 TGAACAAAGGGAGCAACTAACAAC 59.903 41.667 0.00 0.00 0.00 3.32
6365 7699 4.097286 GTGAACAAAGGGAGCAACTAACAA 59.903 41.667 0.00 0.00 0.00 2.83
6387 7721 6.854496 TTAACTGTCGCTGATTAACTTTGT 57.146 33.333 0.00 0.00 0.00 2.83
6391 7725 7.653713 CCTCATATTAACTGTCGCTGATTAACT 59.346 37.037 0.00 0.00 0.00 2.24
6392 7726 7.095607 CCCTCATATTAACTGTCGCTGATTAAC 60.096 40.741 0.00 0.00 0.00 2.01
6393 7727 6.929049 CCCTCATATTAACTGTCGCTGATTAA 59.071 38.462 0.00 0.00 0.00 1.40
6394 7728 6.266786 TCCCTCATATTAACTGTCGCTGATTA 59.733 38.462 0.00 0.00 0.00 1.75
6439 7788 6.704493 ACACAAAAACACGTCTATACACATCT 59.296 34.615 0.00 0.00 0.00 2.90
6468 7817 5.409520 GCATACAGACTGAAATGAGTGAACA 59.590 40.000 19.87 0.00 0.00 3.18
6529 7878 4.080243 TCTCCACAAAAACCTACACCTTCA 60.080 41.667 0.00 0.00 0.00 3.02
6587 7937 0.610687 AACAGTACTCCTCAGCAGGC 59.389 55.000 0.00 0.00 40.12 4.85
6592 7942 4.855715 TTGTCTGAACAGTACTCCTCAG 57.144 45.455 18.74 18.74 36.57 3.35
6753 8144 4.211125 TGGACAATGTTTTACTCCTTGCA 58.789 39.130 0.00 0.00 0.00 4.08
6794 8190 6.151985 TGGCCGACATTTCTGTTTGTATAATT 59.848 34.615 0.00 0.00 35.14 1.40
6802 8198 1.880027 GAGTGGCCGACATTTCTGTTT 59.120 47.619 0.00 0.00 35.14 2.83
6803 8199 1.523758 GAGTGGCCGACATTTCTGTT 58.476 50.000 0.00 0.00 35.14 3.16
6815 8211 1.664873 GAAGAATTACCGGAGTGGCC 58.335 55.000 9.46 0.00 43.94 5.36
6817 8213 2.906354 CTGGAAGAATTACCGGAGTGG 58.094 52.381 9.46 0.00 39.74 4.00
6819 8215 1.209747 GGCTGGAAGAATTACCGGAGT 59.790 52.381 9.46 0.00 34.07 3.85
6840 8237 1.732259 GAGAAGGTGTGTATGTTGCCG 59.268 52.381 0.00 0.00 0.00 5.69
6841 8238 3.059352 AGAGAAGGTGTGTATGTTGCC 57.941 47.619 0.00 0.00 0.00 4.52
6842 8239 4.392138 GGTTAGAGAAGGTGTGTATGTTGC 59.608 45.833 0.00 0.00 0.00 4.17
6844 8241 5.307196 AGTGGTTAGAGAAGGTGTGTATGTT 59.693 40.000 0.00 0.00 0.00 2.71
6845 8242 4.838986 AGTGGTTAGAGAAGGTGTGTATGT 59.161 41.667 0.00 0.00 0.00 2.29
6846 8243 5.407407 AGTGGTTAGAGAAGGTGTGTATG 57.593 43.478 0.00 0.00 0.00 2.39
6847 8244 6.042781 TCAAAGTGGTTAGAGAAGGTGTGTAT 59.957 38.462 0.00 0.00 0.00 2.29
6848 8245 5.364446 TCAAAGTGGTTAGAGAAGGTGTGTA 59.636 40.000 0.00 0.00 0.00 2.90
6849 8246 4.163458 TCAAAGTGGTTAGAGAAGGTGTGT 59.837 41.667 0.00 0.00 0.00 3.72
6850 8247 4.703897 TCAAAGTGGTTAGAGAAGGTGTG 58.296 43.478 0.00 0.00 0.00 3.82
6851 8248 5.367945 TTCAAAGTGGTTAGAGAAGGTGT 57.632 39.130 0.00 0.00 0.00 4.16
6852 8249 4.757149 CCTTCAAAGTGGTTAGAGAAGGTG 59.243 45.833 10.11 0.00 44.33 4.00
6853 8250 4.974399 CCTTCAAAGTGGTTAGAGAAGGT 58.026 43.478 10.11 0.00 44.33 3.50
6855 8252 4.646572 AGCCTTCAAAGTGGTTAGAGAAG 58.353 43.478 0.00 0.00 33.96 2.85
6856 8253 4.706842 AGCCTTCAAAGTGGTTAGAGAA 57.293 40.909 0.00 0.00 0.00 2.87
6857 8254 5.084519 TCTAGCCTTCAAAGTGGTTAGAGA 58.915 41.667 0.00 0.00 39.89 3.10
6858 8255 5.407407 TCTAGCCTTCAAAGTGGTTAGAG 57.593 43.478 0.00 0.00 39.89 2.43
6859 8256 6.374417 AATCTAGCCTTCAAAGTGGTTAGA 57.626 37.500 7.77 7.77 45.50 2.10
6860 8257 6.258947 GCTAATCTAGCCTTCAAAGTGGTTAG 59.741 42.308 0.00 0.00 45.95 2.34
6861 8258 6.113411 GCTAATCTAGCCTTCAAAGTGGTTA 58.887 40.000 0.00 0.00 45.95 2.85
6862 8259 4.944317 GCTAATCTAGCCTTCAAAGTGGTT 59.056 41.667 0.00 0.00 45.95 3.67
6881 8278 4.508461 TGTAGCGTAGTGTTTCTGCTAA 57.492 40.909 0.00 0.00 39.60 3.09
6891 8288 3.435327 TGCAAAAGGAATGTAGCGTAGTG 59.565 43.478 0.00 0.00 0.00 2.74
6893 8290 4.678509 TTGCAAAAGGAATGTAGCGTAG 57.321 40.909 0.00 0.00 0.00 3.51
6954 8354 0.824109 AGAGCCAAATCCGTCGATCA 59.176 50.000 0.00 0.00 0.00 2.92
6959 8359 3.430218 CGATCAATAGAGCCAAATCCGTC 59.570 47.826 0.00 0.00 0.00 4.79
6963 8363 2.802816 ACGCGATCAATAGAGCCAAATC 59.197 45.455 15.93 0.00 0.00 2.17
6968 8368 3.987868 TCATAAACGCGATCAATAGAGCC 59.012 43.478 15.93 0.00 0.00 4.70
6972 8372 7.702348 TCCATCTATCATAAACGCGATCAATAG 59.298 37.037 15.93 11.71 0.00 1.73
6974 8374 6.398095 TCCATCTATCATAAACGCGATCAAT 58.602 36.000 15.93 0.00 0.00 2.57
7018 8419 3.354948 TGAGACATTAAGCAGTGCCAT 57.645 42.857 12.58 3.60 0.00 4.40
7024 8425 6.346919 GCCGTTACATATGAGACATTAAGCAG 60.347 42.308 10.38 0.00 0.00 4.24
7025 8426 5.465390 GCCGTTACATATGAGACATTAAGCA 59.535 40.000 10.38 0.00 0.00 3.91
7026 8427 5.388475 CGCCGTTACATATGAGACATTAAGC 60.388 44.000 10.38 4.93 0.00 3.09
7051 8452 6.414694 CACATGATGATAACATTACCAAACGC 59.585 38.462 0.00 0.00 36.82 4.84
7105 8516 3.059306 CGGCGAGCAAAAACAAACATATG 59.941 43.478 0.00 0.00 0.00 1.78
7107 8518 2.033550 ACGGCGAGCAAAAACAAACATA 59.966 40.909 16.62 0.00 0.00 2.29
7109 8520 0.171455 ACGGCGAGCAAAAACAAACA 59.829 45.000 16.62 0.00 0.00 2.83
7110 8521 0.570272 CACGGCGAGCAAAAACAAAC 59.430 50.000 16.62 0.00 0.00 2.93
7112 8523 1.587613 GCACGGCGAGCAAAAACAA 60.588 52.632 23.98 0.00 0.00 2.83
7114 8525 2.010817 CTGCACGGCGAGCAAAAAC 61.011 57.895 30.04 2.03 42.17 2.43
7138 8550 1.308998 CACTTTTCCTCAGGCGTTGT 58.691 50.000 0.00 0.00 0.00 3.32
7145 8557 0.795085 CGAGCTGCACTTTTCCTCAG 59.205 55.000 1.02 0.00 0.00 3.35
7146 8558 0.106708 ACGAGCTGCACTTTTCCTCA 59.893 50.000 1.02 0.00 0.00 3.86
7152 8564 2.032681 GGGGACGAGCTGCACTTT 59.967 61.111 1.02 0.00 0.00 2.66
7153 8565 4.021925 GGGGGACGAGCTGCACTT 62.022 66.667 1.02 0.00 0.00 3.16
7170 8582 2.731348 GCGCGGGAGAATAGCTCG 60.731 66.667 8.83 0.00 44.91 5.03
7171 8583 2.731348 CGCGCGGGAGAATAGCTC 60.731 66.667 24.84 0.00 43.17 4.09
7186 8598 4.851214 AGAGGGAGGAGGAGGCGC 62.851 72.222 0.00 0.00 0.00 6.53
7192 8604 1.454847 CTCGGTCAGAGGGAGGAGG 60.455 68.421 0.00 0.00 43.20 4.30
7214 8626 3.781307 CGTTCTCGGGGATGGGCA 61.781 66.667 0.00 0.00 0.00 5.36
7257 8669 2.094126 GATCGACGGATTTGGCGCAG 62.094 60.000 10.83 0.00 31.51 5.18
7262 8674 2.010145 ACACTGATCGACGGATTTGG 57.990 50.000 0.00 0.00 31.51 3.28
7263 8675 4.404507 AAAACACTGATCGACGGATTTG 57.595 40.909 0.00 0.00 31.51 2.32
7316 8740 5.533903 ATCATTTTGATGGCTAGGTTAGCAG 59.466 40.000 9.99 0.00 42.54 4.24
7336 8761 6.150976 TCGAGTAAATTGCAAGAAACCATCAT 59.849 34.615 4.94 0.00 0.00 2.45
7339 8764 5.957842 TCGAGTAAATTGCAAGAAACCAT 57.042 34.783 4.94 0.00 0.00 3.55
7361 8786 0.247736 GACTGGACGAACAGCTCCAT 59.752 55.000 10.25 0.00 42.21 3.41
7368 8793 2.675844 CTGTTGTTTGACTGGACGAACA 59.324 45.455 0.00 0.00 40.85 3.18
7372 8797 0.307760 GGCTGTTGTTTGACTGGACG 59.692 55.000 0.00 0.00 0.00 4.79
7393 8818 1.002142 CGTGCCAGCATCATGTAATGG 60.002 52.381 0.00 2.25 46.73 3.16
7397 8822 0.179076 CCTCGTGCCAGCATCATGTA 60.179 55.000 0.00 0.00 0.00 2.29
7398 8823 1.450848 CCTCGTGCCAGCATCATGT 60.451 57.895 0.00 0.00 0.00 3.21
7399 8824 0.179076 TACCTCGTGCCAGCATCATG 60.179 55.000 0.00 0.00 0.00 3.07
7400 8825 0.541392 TTACCTCGTGCCAGCATCAT 59.459 50.000 0.00 0.00 0.00 2.45
7401 8826 0.541392 ATTACCTCGTGCCAGCATCA 59.459 50.000 0.00 0.00 0.00 3.07
7402 8827 1.221414 GATTACCTCGTGCCAGCATC 58.779 55.000 0.00 0.00 0.00 3.91
7403 8828 0.541392 TGATTACCTCGTGCCAGCAT 59.459 50.000 0.00 0.00 0.00 3.79
7404 8829 0.323302 TTGATTACCTCGTGCCAGCA 59.677 50.000 0.00 0.00 0.00 4.41
7405 8830 1.398390 CTTTGATTACCTCGTGCCAGC 59.602 52.381 0.00 0.00 0.00 4.85
7406 8831 1.398390 GCTTTGATTACCTCGTGCCAG 59.602 52.381 0.00 0.00 0.00 4.85
7407 8832 1.003118 AGCTTTGATTACCTCGTGCCA 59.997 47.619 0.00 0.00 0.00 4.92
7408 8833 1.398390 CAGCTTTGATTACCTCGTGCC 59.602 52.381 0.00 0.00 0.00 5.01
7409 8834 1.202076 GCAGCTTTGATTACCTCGTGC 60.202 52.381 0.00 0.00 0.00 5.34
7410 8835 1.398390 GGCAGCTTTGATTACCTCGTG 59.602 52.381 0.00 0.00 0.00 4.35
7411 8836 1.679032 GGGCAGCTTTGATTACCTCGT 60.679 52.381 0.00 0.00 0.00 4.18
7412 8837 1.017387 GGGCAGCTTTGATTACCTCG 58.983 55.000 0.00 0.00 0.00 4.63
7413 8838 1.340991 TGGGGCAGCTTTGATTACCTC 60.341 52.381 0.00 0.00 0.00 3.85
7414 8839 0.704076 TGGGGCAGCTTTGATTACCT 59.296 50.000 0.00 0.00 0.00 3.08
7415 8840 1.106285 CTGGGGCAGCTTTGATTACC 58.894 55.000 0.00 0.00 0.00 2.85
7428 8853 1.363807 GTTTTGAGTGTGCTGGGGC 59.636 57.895 0.00 0.00 39.26 5.80
7429 8854 1.654220 CGTTTTGAGTGTGCTGGGG 59.346 57.895 0.00 0.00 0.00 4.96
7430 8855 1.008538 GCGTTTTGAGTGTGCTGGG 60.009 57.895 0.00 0.00 0.00 4.45
7431 8856 1.369209 CGCGTTTTGAGTGTGCTGG 60.369 57.895 0.00 0.00 0.00 4.85
7432 8857 2.005537 GCGCGTTTTGAGTGTGCTG 61.006 57.895 8.43 0.00 36.26 4.41
7433 8858 2.327940 GCGCGTTTTGAGTGTGCT 59.672 55.556 8.43 0.00 36.26 4.40
7434 8859 2.725815 GGCGCGTTTTGAGTGTGC 60.726 61.111 8.43 0.00 38.36 4.57
7435 8860 2.051345 GGGCGCGTTTTGAGTGTG 60.051 61.111 8.43 0.00 0.00 3.82
7436 8861 2.515057 TGGGCGCGTTTTGAGTGT 60.515 55.556 8.43 0.00 0.00 3.55
7437 8862 1.225376 TACTGGGCGCGTTTTGAGTG 61.225 55.000 8.43 0.00 0.00 3.51
7438 8863 1.070105 TACTGGGCGCGTTTTGAGT 59.930 52.632 8.43 5.83 0.00 3.41
7439 8864 1.225376 TGTACTGGGCGCGTTTTGAG 61.225 55.000 8.43 0.00 0.00 3.02
7440 8865 0.814410 TTGTACTGGGCGCGTTTTGA 60.814 50.000 8.43 0.00 0.00 2.69
7441 8866 0.659123 GTTGTACTGGGCGCGTTTTG 60.659 55.000 8.43 0.00 0.00 2.44
7442 8867 1.650363 GTTGTACTGGGCGCGTTTT 59.350 52.632 8.43 0.00 0.00 2.43
7443 8868 2.255881 GGTTGTACTGGGCGCGTTT 61.256 57.895 8.43 0.00 0.00 3.60
7444 8869 2.667199 GGTTGTACTGGGCGCGTT 60.667 61.111 8.43 0.00 0.00 4.84
7445 8870 3.931247 TGGTTGTACTGGGCGCGT 61.931 61.111 8.43 0.00 0.00 6.01
7446 8871 3.419759 GTGGTTGTACTGGGCGCG 61.420 66.667 0.00 0.00 0.00 6.86
7447 8872 3.053896 GGTGGTTGTACTGGGCGC 61.054 66.667 0.00 0.00 0.00 6.53
7448 8873 2.157305 TACGGTGGTTGTACTGGGCG 62.157 60.000 0.00 0.00 0.00 6.13
7449 8874 0.390735 CTACGGTGGTTGTACTGGGC 60.391 60.000 0.00 0.00 0.00 5.36
7450 8875 0.390735 GCTACGGTGGTTGTACTGGG 60.391 60.000 0.00 0.00 0.00 4.45
7451 8876 0.319083 TGCTACGGTGGTTGTACTGG 59.681 55.000 0.00 0.00 0.00 4.00
7452 8877 1.000506 AGTGCTACGGTGGTTGTACTG 59.999 52.381 0.00 0.00 41.50 2.74
7453 8878 1.335145 AGTGCTACGGTGGTTGTACT 58.665 50.000 0.00 0.00 39.23 2.73
7454 8879 2.030007 TGTAGTGCTACGGTGGTTGTAC 60.030 50.000 5.08 0.00 38.85 2.90
7455 8880 2.030007 GTGTAGTGCTACGGTGGTTGTA 60.030 50.000 5.08 0.00 38.85 2.41
7456 8881 1.042229 TGTAGTGCTACGGTGGTTGT 58.958 50.000 5.08 0.00 38.85 3.32
7457 8882 1.000506 AGTGTAGTGCTACGGTGGTTG 59.999 52.381 5.08 0.00 38.85 3.77
7458 8883 1.335145 AGTGTAGTGCTACGGTGGTT 58.665 50.000 5.08 0.00 38.85 3.67
7459 8884 2.089980 CTAGTGTAGTGCTACGGTGGT 58.910 52.381 5.08 0.00 38.85 4.16
7460 8885 2.355132 CTCTAGTGTAGTGCTACGGTGG 59.645 54.545 5.08 0.00 38.85 4.61
7461 8886 2.223294 GCTCTAGTGTAGTGCTACGGTG 60.223 54.545 5.08 0.00 40.93 4.94
7462 8887 2.015587 GCTCTAGTGTAGTGCTACGGT 58.984 52.381 5.08 0.00 40.93 4.83
7463 8888 1.334243 GGCTCTAGTGTAGTGCTACGG 59.666 57.143 7.67 0.00 43.00 4.02
7464 8889 2.014857 TGGCTCTAGTGTAGTGCTACG 58.985 52.381 7.67 0.00 43.00 3.51
7465 8890 3.423996 GTGGCTCTAGTGTAGTGCTAC 57.576 52.381 8.21 8.21 44.95 3.58
7466 8891 3.081710 TGTGGCTCTAGTGTAGTGCTA 57.918 47.619 7.67 0.10 43.00 3.49
7467 8892 1.924731 TGTGGCTCTAGTGTAGTGCT 58.075 50.000 7.67 0.00 43.00 4.40
7468 8893 2.737252 GTTTGTGGCTCTAGTGTAGTGC 59.263 50.000 0.35 0.35 42.77 4.40
7469 8894 3.741344 GTGTTTGTGGCTCTAGTGTAGTG 59.259 47.826 0.00 0.00 0.00 2.74
7470 8895 3.244112 GGTGTTTGTGGCTCTAGTGTAGT 60.244 47.826 0.00 0.00 0.00 2.73
7471 8896 3.326747 GGTGTTTGTGGCTCTAGTGTAG 58.673 50.000 0.00 0.00 0.00 2.74
7472 8897 2.288579 CGGTGTTTGTGGCTCTAGTGTA 60.289 50.000 0.00 0.00 0.00 2.90
7473 8898 1.540363 CGGTGTTTGTGGCTCTAGTGT 60.540 52.381 0.00 0.00 0.00 3.55
7474 8899 1.148310 CGGTGTTTGTGGCTCTAGTG 58.852 55.000 0.00 0.00 0.00 2.74
7475 8900 0.602905 GCGGTGTTTGTGGCTCTAGT 60.603 55.000 0.00 0.00 0.00 2.57
7476 8901 0.602638 TGCGGTGTTTGTGGCTCTAG 60.603 55.000 0.00 0.00 0.00 2.43
7477 8902 0.602638 CTGCGGTGTTTGTGGCTCTA 60.603 55.000 0.00 0.00 0.00 2.43
7478 8903 1.893808 CTGCGGTGTTTGTGGCTCT 60.894 57.895 0.00 0.00 0.00 4.09
7479 8904 2.639286 CTGCGGTGTTTGTGGCTC 59.361 61.111 0.00 0.00 0.00 4.70
7480 8905 3.595758 GCTGCGGTGTTTGTGGCT 61.596 61.111 0.00 0.00 0.00 4.75
7481 8906 3.542629 GAGCTGCGGTGTTTGTGGC 62.543 63.158 0.00 0.00 0.00 5.01
7482 8907 2.639286 GAGCTGCGGTGTTTGTGG 59.361 61.111 0.00 0.00 0.00 4.17
7483 8908 2.047151 AACGAGCTGCGGTGTTTGTG 62.047 55.000 0.00 0.00 46.49 3.33
7484 8909 1.772063 GAACGAGCTGCGGTGTTTGT 61.772 55.000 0.00 0.00 42.25 2.83
7485 8910 1.082756 GAACGAGCTGCGGTGTTTG 60.083 57.895 0.00 0.00 42.25 2.93
7486 8911 2.594962 CGAACGAGCTGCGGTGTTT 61.595 57.895 0.00 0.00 42.25 2.83
7487 8912 3.036084 CGAACGAGCTGCGGTGTT 61.036 61.111 0.00 6.85 42.25 3.32
7488 8913 3.973516 TCGAACGAGCTGCGGTGT 61.974 61.111 0.00 0.00 42.25 4.16
7489 8914 3.470567 GTCGAACGAGCTGCGGTG 61.471 66.667 0.00 0.00 42.25 4.94
7491 8916 2.876645 GAGTCGAACGAGCTGCGG 60.877 66.667 0.00 0.00 46.49 5.69
7493 8918 1.068287 GACTGAGTCGAACGAGCTGC 61.068 60.000 0.00 0.00 0.00 5.25
7494 8919 0.238553 TGACTGAGTCGAACGAGCTG 59.761 55.000 8.23 0.62 34.95 4.24
7495 8920 0.952280 TTGACTGAGTCGAACGAGCT 59.048 50.000 8.23 0.00 34.95 4.09
7496 8921 1.332178 CTTGACTGAGTCGAACGAGC 58.668 55.000 8.23 0.00 34.95 5.03
7497 8922 1.970447 CCTTGACTGAGTCGAACGAG 58.030 55.000 8.23 1.14 34.95 4.18
7498 8923 0.039437 GCCTTGACTGAGTCGAACGA 60.039 55.000 8.23 0.00 34.95 3.85
7499 8924 0.318699 TGCCTTGACTGAGTCGAACG 60.319 55.000 8.23 0.46 34.95 3.95
7500 8925 1.728971 CATGCCTTGACTGAGTCGAAC 59.271 52.381 8.23 2.10 34.95 3.95
7501 8926 1.338105 CCATGCCTTGACTGAGTCGAA 60.338 52.381 8.23 3.06 34.95 3.71
7502 8927 0.247460 CCATGCCTTGACTGAGTCGA 59.753 55.000 8.23 5.13 34.95 4.20
7503 8928 0.036952 ACCATGCCTTGACTGAGTCG 60.037 55.000 8.23 0.00 34.95 4.18
7504 8929 1.446907 CACCATGCCTTGACTGAGTC 58.553 55.000 5.47 5.47 0.00 3.36
7505 8930 0.037303 CCACCATGCCTTGACTGAGT 59.963 55.000 0.00 0.00 0.00 3.41
7506 8931 0.679002 CCCACCATGCCTTGACTGAG 60.679 60.000 0.00 0.00 0.00 3.35
7507 8932 1.379916 CCCACCATGCCTTGACTGA 59.620 57.895 0.00 0.00 0.00 3.41
7508 8933 2.345760 GCCCACCATGCCTTGACTG 61.346 63.158 0.00 0.00 0.00 3.51
7509 8934 2.036256 GCCCACCATGCCTTGACT 59.964 61.111 0.00 0.00 0.00 3.41
7510 8935 3.443045 CGCCCACCATGCCTTGAC 61.443 66.667 0.00 0.00 0.00 3.18
7511 8936 3.626996 CTCGCCCACCATGCCTTGA 62.627 63.158 0.00 0.00 0.00 3.02
7512 8937 3.136123 CTCGCCCACCATGCCTTG 61.136 66.667 0.00 0.00 0.00 3.61
7516 8941 3.896133 CATGCTCGCCCACCATGC 61.896 66.667 0.00 0.00 31.16 4.06
7517 8942 2.124612 TCATGCTCGCCCACCATG 60.125 61.111 0.00 0.00 38.10 3.66
7518 8943 2.191375 CTCATGCTCGCCCACCAT 59.809 61.111 0.00 0.00 0.00 3.55
7519 8944 4.783621 GCTCATGCTCGCCCACCA 62.784 66.667 0.00 0.00 36.03 4.17
7541 8966 2.856039 TTTTCGGTTGGTGGTGCCCA 62.856 55.000 0.00 0.00 36.04 5.36
7542 8967 2.082629 CTTTTCGGTTGGTGGTGCCC 62.083 60.000 0.00 0.00 36.04 5.36
7543 8968 1.362355 CTTTTCGGTTGGTGGTGCC 59.638 57.895 0.00 0.00 37.90 5.01
7544 8969 0.248866 CACTTTTCGGTTGGTGGTGC 60.249 55.000 0.00 0.00 0.00 5.01
7545 8970 1.384525 TCACTTTTCGGTTGGTGGTG 58.615 50.000 0.00 0.00 0.00 4.17
7546 8971 2.021457 CTTCACTTTTCGGTTGGTGGT 58.979 47.619 0.00 0.00 0.00 4.16
7547 8972 1.336755 CCTTCACTTTTCGGTTGGTGG 59.663 52.381 0.00 0.00 0.00 4.61
7548 8973 2.774439 CCTTCACTTTTCGGTTGGTG 57.226 50.000 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.