Multiple sequence alignment - TraesCS7D01G160500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G160500 chr7D 100.000 4902 0 0 1 4902 110880595 110885496 0.000000e+00 9053.0
1 TraesCS7D01G160500 chr7D 91.079 751 38 12 2 737 72312523 72313259 0.000000e+00 989.0
2 TraesCS7D01G160500 chr7D 90.763 747 37 13 2 737 235508610 235509335 0.000000e+00 968.0
3 TraesCS7D01G160500 chr7D 94.595 222 8 3 3989 4207 110890316 110890536 1.690000e-89 340.0
4 TraesCS7D01G160500 chr7D 83.500 200 27 6 4255 4451 92258123 92258319 1.080000e-41 182.0
5 TraesCS7D01G160500 chr7B 94.997 2998 103 23 983 3966 69819094 69822058 0.000000e+00 4662.0
6 TraesCS7D01G160500 chr7B 88.086 512 22 13 3950 4445 69822077 69822565 5.500000e-159 571.0
7 TraesCS7D01G160500 chr7B 92.996 257 17 1 4479 4735 69822758 69823013 1.670000e-99 374.0
8 TraesCS7D01G160500 chr7B 94.144 222 9 3 3989 4207 70243194 70243414 7.860000e-88 335.0
9 TraesCS7D01G160500 chr7B 93.694 222 10 3 3989 4207 69912531 69912751 3.660000e-86 329.0
10 TraesCS7D01G160500 chr7B 93.694 222 10 3 3989 4207 70068914 70069134 3.660000e-86 329.0
11 TraesCS7D01G160500 chr7A 94.293 2944 103 22 1035 3969 116005200 116008087 0.000000e+00 4446.0
12 TraesCS7D01G160500 chr7A 84.728 478 38 5 4438 4884 116008784 116009257 3.480000e-121 446.0
13 TraesCS7D01G160500 chr7A 95.833 216 5 2 3992 4207 116018526 116018737 3.630000e-91 346.0
14 TraesCS7D01G160500 chr7A 93.125 160 7 3 3950 4105 116008104 116008263 1.060000e-56 231.0
15 TraesCS7D01G160500 chr7A 88.166 169 19 1 4279 4447 690947374 690947207 2.990000e-47 200.0
16 TraesCS7D01G160500 chr7A 86.777 121 14 1 4468 4586 412732122 412732002 3.080000e-27 134.0
17 TraesCS7D01G160500 chr7A 91.753 97 7 1 4490 4586 530861483 530861388 3.080000e-27 134.0
18 TraesCS7D01G160500 chr7A 87.387 111 11 3 4478 4588 71072863 71072756 1.850000e-24 124.0
19 TraesCS7D01G160500 chr7A 90.476 42 3 1 4190 4231 545681738 545681698 2.000000e-03 54.7
20 TraesCS7D01G160500 chr4D 92.267 750 39 13 1 737 132435460 132436203 0.000000e+00 1046.0
21 TraesCS7D01G160500 chr4D 91.888 752 34 11 2 737 410309381 410308641 0.000000e+00 1026.0
22 TraesCS7D01G160500 chr4D 81.604 212 34 4 4255 4463 81380470 81380261 2.350000e-38 171.0
23 TraesCS7D01G160500 chr4D 88.333 120 13 1 4468 4586 379499005 379498886 5.110000e-30 143.0
24 TraesCS7D01G160500 chr6B 92.027 740 48 10 4 737 400088665 400087931 0.000000e+00 1029.0
25 TraesCS7D01G160500 chr6B 89.880 751 42 15 2 737 674201477 674202208 0.000000e+00 935.0
26 TraesCS7D01G160500 chr6B 93.694 222 10 3 3989 4207 548948317 548948537 3.660000e-86 329.0
27 TraesCS7D01G160500 chr6B 93.694 222 10 3 3989 4207 549028829 549029049 3.660000e-86 329.0
28 TraesCS7D01G160500 chr5B 90.426 752 41 15 2 737 236066313 236067049 0.000000e+00 961.0
29 TraesCS7D01G160500 chr5B 76.303 211 26 7 4261 4448 458907041 458907250 1.880000e-14 91.6
30 TraesCS7D01G160500 chr5A 90.053 754 43 14 2 737 257557691 257556952 0.000000e+00 948.0
31 TraesCS7D01G160500 chr5A 90.066 755 41 16 2 737 302994552 302993813 0.000000e+00 948.0
32 TraesCS7D01G160500 chr5A 90.909 121 9 1 4468 4586 452433108 452432988 1.410000e-35 161.0
33 TraesCS7D01G160500 chr5A 78.114 297 30 17 4581 4846 681492977 681492685 6.570000e-34 156.0
34 TraesCS7D01G160500 chr2A 89.920 754 42 17 2 737 471776357 471775620 0.000000e+00 941.0
35 TraesCS7D01G160500 chr2A 89.801 755 44 18 2 737 755092904 755093644 0.000000e+00 937.0
36 TraesCS7D01G160500 chr2A 89.879 741 43 14 2 724 618965067 618964341 0.000000e+00 924.0
37 TraesCS7D01G160500 chr2A 80.702 228 32 10 4241 4465 749843993 749844211 3.040000e-37 167.0
38 TraesCS7D01G160500 chr2A 90.654 107 9 1 4634 4739 104443031 104442925 1.840000e-29 141.0
39 TraesCS7D01G160500 chr2A 100.000 32 0 0 4200 4231 277174657 277174688 5.300000e-05 60.2
40 TraesCS7D01G160500 chrUn 82.126 621 61 21 1286 1901 109548373 109548948 2.050000e-133 486.0
41 TraesCS7D01G160500 chrUn 93.694 222 10 3 3989 4207 426294616 426294836 3.660000e-86 329.0
42 TraesCS7D01G160500 chr3A 81.280 625 63 19 1286 1901 326495006 326495585 1.610000e-124 457.0
43 TraesCS7D01G160500 chr3A 81.051 628 66 23 1283 1901 137587790 137588373 7.480000e-123 451.0
44 TraesCS7D01G160500 chr3A 89.691 97 10 0 4639 4735 118586015 118586111 1.850000e-24 124.0
45 TraesCS7D01G160500 chr3A 98.077 52 1 0 4847 4898 722494732 722494783 1.880000e-14 91.6
46 TraesCS7D01G160500 chr3A 100.000 32 0 0 4201 4232 42105140 42105109 5.300000e-05 60.2
47 TraesCS7D01G160500 chr3A 100.000 32 0 0 4201 4232 42134052 42134021 5.300000e-05 60.2
48 TraesCS7D01G160500 chr1D 98.026 152 3 0 3765 3916 382909148 382909299 1.050000e-66 265.0
49 TraesCS7D01G160500 chr1D 84.677 124 19 0 4465 4588 475841579 475841702 1.850000e-24 124.0
50 TraesCS7D01G160500 chr1A 90.722 194 16 2 4542 4735 320328170 320327979 1.750000e-64 257.0
51 TraesCS7D01G160500 chr1A 86.441 177 22 2 4268 4444 137935093 137935267 5.010000e-45 193.0
52 TraesCS7D01G160500 chr4A 83.000 200 30 4 4269 4465 157874356 157874158 1.400000e-40 178.0
53 TraesCS7D01G160500 chr2B 82.075 212 34 4 4255 4465 786239872 786239664 1.400000e-40 178.0
54 TraesCS7D01G160500 chr2B 85.430 151 15 6 4592 4735 158140953 158140803 3.060000e-32 150.0
55 TraesCS7D01G160500 chr2B 88.119 101 9 3 4499 4596 752821547 752821647 3.100000e-22 117.0
56 TraesCS7D01G160500 chr2B 77.533 227 27 8 4639 4841 146554833 146555059 1.120000e-21 115.0
57 TraesCS7D01G160500 chr2B 80.000 80 15 1 736 814 186381951 186381872 1.910000e-04 58.4
58 TraesCS7D01G160500 chr5D 84.571 175 21 4 4255 4427 420632987 420633157 8.440000e-38 169.0
59 TraesCS7D01G160500 chr5D 83.616 177 13 11 4573 4735 24962557 24962383 8.500000e-33 152.0
60 TraesCS7D01G160500 chr3D 82.323 198 30 5 4254 4451 580329742 580329550 3.040000e-37 167.0
61 TraesCS7D01G160500 chr3D 84.277 159 20 3 4585 4742 511443308 511443154 3.060000e-32 150.0
62 TraesCS7D01G160500 chr3D 94.286 35 2 0 4198 4232 371632003 371631969 2.000000e-03 54.7
63 TraesCS7D01G160500 chr3B 82.781 151 19 5 4585 4734 673097203 673097059 1.430000e-25 128.0
64 TraesCS7D01G160500 chr3B 89.610 77 7 1 4766 4841 505039150 505039074 4.040000e-16 97.1
65 TraesCS7D01G160500 chr3B 100.000 32 0 0 4201 4232 791263726 791263695 5.300000e-05 60.2
66 TraesCS7D01G160500 chr6A 84.874 119 16 1 4468 4586 32908883 32908767 8.620000e-23 119.0
67 TraesCS7D01G160500 chr6A 81.553 103 18 1 4272 4374 449835699 449835598 3.140000e-12 84.2
68 TraesCS7D01G160500 chr4B 86.842 76 10 0 4766 4841 29887830 29887905 8.740000e-13 86.1
69 TraesCS7D01G160500 chr2D 92.500 40 3 0 772 811 303509055 303509094 1.910000e-04 58.4
70 TraesCS7D01G160500 chr2D 100.000 29 0 0 4423 4451 470046793 470046765 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G160500 chr7D 110880595 110885496 4901 False 9053.000000 9053 100.000000 1 4902 1 chr7D.!!$F3 4901
1 TraesCS7D01G160500 chr7D 72312523 72313259 736 False 989.000000 989 91.079000 2 737 1 chr7D.!!$F1 735
2 TraesCS7D01G160500 chr7D 235508610 235509335 725 False 968.000000 968 90.763000 2 737 1 chr7D.!!$F5 735
3 TraesCS7D01G160500 chr7B 69819094 69823013 3919 False 1869.000000 4662 92.026333 983 4735 3 chr7B.!!$F4 3752
4 TraesCS7D01G160500 chr7A 116005200 116009257 4057 False 1707.666667 4446 90.715333 1035 4884 3 chr7A.!!$F2 3849
5 TraesCS7D01G160500 chr4D 132435460 132436203 743 False 1046.000000 1046 92.267000 1 737 1 chr4D.!!$F1 736
6 TraesCS7D01G160500 chr4D 410308641 410309381 740 True 1026.000000 1026 91.888000 2 737 1 chr4D.!!$R3 735
7 TraesCS7D01G160500 chr6B 400087931 400088665 734 True 1029.000000 1029 92.027000 4 737 1 chr6B.!!$R1 733
8 TraesCS7D01G160500 chr6B 674201477 674202208 731 False 935.000000 935 89.880000 2 737 1 chr6B.!!$F3 735
9 TraesCS7D01G160500 chr5B 236066313 236067049 736 False 961.000000 961 90.426000 2 737 1 chr5B.!!$F1 735
10 TraesCS7D01G160500 chr5A 257556952 257557691 739 True 948.000000 948 90.053000 2 737 1 chr5A.!!$R1 735
11 TraesCS7D01G160500 chr5A 302993813 302994552 739 True 948.000000 948 90.066000 2 737 1 chr5A.!!$R2 735
12 TraesCS7D01G160500 chr2A 471775620 471776357 737 True 941.000000 941 89.920000 2 737 1 chr2A.!!$R2 735
13 TraesCS7D01G160500 chr2A 755092904 755093644 740 False 937.000000 937 89.801000 2 737 1 chr2A.!!$F3 735
14 TraesCS7D01G160500 chr2A 618964341 618965067 726 True 924.000000 924 89.879000 2 724 1 chr2A.!!$R3 722
15 TraesCS7D01G160500 chrUn 109548373 109548948 575 False 486.000000 486 82.126000 1286 1901 1 chrUn.!!$F1 615
16 TraesCS7D01G160500 chr3A 326495006 326495585 579 False 457.000000 457 81.280000 1286 1901 1 chr3A.!!$F3 615
17 TraesCS7D01G160500 chr3A 137587790 137588373 583 False 451.000000 451 81.051000 1283 1901 1 chr3A.!!$F2 618

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
990 1020 0.108377 ATACATTGCTCACGCGGTGA 60.108 50.000 12.47 11.08 40.50 4.02 F
1679 1723 0.251165 TTTGTACCTGCAGGAAGGCC 60.251 55.000 39.19 19.80 41.46 5.19 F
2577 2632 1.199789 TGACTTCCGCATTGCATCAAC 59.800 47.619 9.69 0.00 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2191 2246 1.268079 GCCAAGAAGAACTCCAGTTGC 59.732 52.381 0.0 0.0 38.56 4.17 R
3315 3374 0.173481 TCCGCACTCTCATCTTTCCG 59.827 55.000 0.0 0.0 0.00 4.30 R
4453 4809 0.406361 TGGGCCCTTAAAATGTCCGT 59.594 50.000 25.7 0.0 0.00 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.479489 TGCTTCTTGTGCTCATTGAAGA 58.521 40.909 23.88 9.13 37.03 2.87
135 136 3.914435 TCTTACTCTTGCCCCTAACCTTT 59.086 43.478 0.00 0.00 0.00 3.11
249 250 6.569610 GCATGTAAGCCAGCAGTAGTTTTTAA 60.570 38.462 0.00 0.00 0.00 1.52
252 253 6.488683 TGTAAGCCAGCAGTAGTTTTTAACAT 59.511 34.615 0.00 0.00 0.00 2.71
308 315 5.995446 AGAGAAACAATACCTCTTGGATCC 58.005 41.667 4.20 4.20 33.86 3.36
324 331 3.947196 TGGATCCAACCGATTCAGATTTG 59.053 43.478 13.46 0.00 30.88 2.32
336 344 1.432807 TCAGATTTGCCCCCTTTTCCT 59.567 47.619 0.00 0.00 0.00 3.36
393 403 6.541641 GGTGAGAAGAAGCAATCAGAATACAT 59.458 38.462 0.00 0.00 0.00 2.29
603 629 4.761227 GTGTAAAATTACGAACCTTGGGGA 59.239 41.667 0.00 0.00 36.45 4.81
614 640 4.682050 CGAACCTTGGGGAAAAACACATTT 60.682 41.667 0.00 0.00 36.25 2.32
677 703 3.763897 AGCTGTTTTGGTTGTCTTTGTCT 59.236 39.130 0.00 0.00 0.00 3.41
737 767 8.982723 AGTAGTGAACATGTATAGTTGGAAGAT 58.017 33.333 0.00 0.00 0.00 2.40
738 768 9.035607 GTAGTGAACATGTATAGTTGGAAGATG 57.964 37.037 0.00 0.00 0.00 2.90
739 769 7.624549 AGTGAACATGTATAGTTGGAAGATGT 58.375 34.615 0.00 0.00 0.00 3.06
740 770 8.103305 AGTGAACATGTATAGTTGGAAGATGTT 58.897 33.333 0.00 0.00 35.74 2.71
741 771 8.391106 GTGAACATGTATAGTTGGAAGATGTTC 58.609 37.037 14.23 14.23 44.24 3.18
742 772 7.277760 TGAACATGTATAGTTGGAAGATGTTCG 59.722 37.037 15.39 0.00 45.74 3.95
743 773 6.640518 ACATGTATAGTTGGAAGATGTTCGT 58.359 36.000 0.00 0.00 32.92 3.85
744 774 7.103641 ACATGTATAGTTGGAAGATGTTCGTT 58.896 34.615 0.00 0.00 32.92 3.85
745 775 7.277981 ACATGTATAGTTGGAAGATGTTCGTTC 59.722 37.037 0.00 0.00 32.92 3.95
746 776 6.693466 TGTATAGTTGGAAGATGTTCGTTCA 58.307 36.000 0.00 0.00 32.92 3.18
747 777 6.811665 TGTATAGTTGGAAGATGTTCGTTCAG 59.188 38.462 0.00 0.00 32.92 3.02
748 778 4.073293 AGTTGGAAGATGTTCGTTCAGT 57.927 40.909 0.00 0.00 32.92 3.41
749 779 5.209818 AGTTGGAAGATGTTCGTTCAGTA 57.790 39.130 0.00 0.00 32.92 2.74
750 780 5.607477 AGTTGGAAGATGTTCGTTCAGTAA 58.393 37.500 0.00 0.00 32.92 2.24
751 781 5.696724 AGTTGGAAGATGTTCGTTCAGTAAG 59.303 40.000 0.00 0.00 32.92 2.34
752 782 5.462530 TGGAAGATGTTCGTTCAGTAAGA 57.537 39.130 0.00 0.00 32.92 2.10
753 783 5.470368 TGGAAGATGTTCGTTCAGTAAGAG 58.530 41.667 0.00 0.00 32.92 2.85
754 784 4.865365 GGAAGATGTTCGTTCAGTAAGAGG 59.135 45.833 0.00 0.00 32.92 3.69
755 785 5.336531 GGAAGATGTTCGTTCAGTAAGAGGA 60.337 44.000 0.00 0.00 32.92 3.71
756 786 5.317733 AGATGTTCGTTCAGTAAGAGGAG 57.682 43.478 0.00 0.00 0.00 3.69
757 787 5.010933 AGATGTTCGTTCAGTAAGAGGAGA 58.989 41.667 0.00 0.00 0.00 3.71
758 788 4.500603 TGTTCGTTCAGTAAGAGGAGAC 57.499 45.455 0.00 0.00 0.00 3.36
759 789 3.058432 TGTTCGTTCAGTAAGAGGAGACG 60.058 47.826 0.00 0.00 0.00 4.18
760 790 2.775890 TCGTTCAGTAAGAGGAGACGT 58.224 47.619 0.00 0.00 0.00 4.34
761 791 3.144506 TCGTTCAGTAAGAGGAGACGTT 58.855 45.455 0.00 0.00 0.00 3.99
762 792 3.188048 TCGTTCAGTAAGAGGAGACGTTC 59.812 47.826 0.00 0.00 0.00 3.95
763 793 3.058432 CGTTCAGTAAGAGGAGACGTTCA 60.058 47.826 0.00 0.00 0.00 3.18
764 794 4.228317 GTTCAGTAAGAGGAGACGTTCAC 58.772 47.826 0.00 0.00 0.00 3.18
765 795 2.483106 TCAGTAAGAGGAGACGTTCACG 59.517 50.000 0.00 0.00 46.33 4.35
777 807 1.757574 CGTTCACGTCGGTTACAAGA 58.242 50.000 0.00 0.00 34.11 3.02
778 808 2.322161 CGTTCACGTCGGTTACAAGAT 58.678 47.619 0.00 0.00 34.11 2.40
779 809 2.090041 CGTTCACGTCGGTTACAAGATG 59.910 50.000 0.00 0.00 34.11 2.90
780 810 3.054878 GTTCACGTCGGTTACAAGATGT 58.945 45.455 0.00 0.40 37.10 3.06
781 811 2.937591 TCACGTCGGTTACAAGATGTC 58.062 47.619 0.00 0.00 34.70 3.06
782 812 2.555325 TCACGTCGGTTACAAGATGTCT 59.445 45.455 0.00 0.00 34.70 3.41
783 813 2.661675 CACGTCGGTTACAAGATGTCTG 59.338 50.000 0.00 0.00 34.70 3.51
784 814 2.295349 ACGTCGGTTACAAGATGTCTGT 59.705 45.455 0.00 0.00 31.61 3.41
785 815 2.661675 CGTCGGTTACAAGATGTCTGTG 59.338 50.000 0.00 0.00 0.00 3.66
786 816 3.610821 CGTCGGTTACAAGATGTCTGTGA 60.611 47.826 0.00 0.00 0.00 3.58
787 817 4.495422 GTCGGTTACAAGATGTCTGTGAT 58.505 43.478 0.00 0.00 0.00 3.06
788 818 4.327357 GTCGGTTACAAGATGTCTGTGATG 59.673 45.833 0.00 0.00 0.00 3.07
789 819 4.219725 TCGGTTACAAGATGTCTGTGATGA 59.780 41.667 0.00 0.00 0.00 2.92
790 820 5.105351 TCGGTTACAAGATGTCTGTGATGAT 60.105 40.000 0.00 0.00 0.00 2.45
791 821 5.582269 CGGTTACAAGATGTCTGTGATGATT 59.418 40.000 0.00 0.00 0.00 2.57
792 822 6.092670 CGGTTACAAGATGTCTGTGATGATTT 59.907 38.462 0.00 0.00 0.00 2.17
793 823 7.467623 GGTTACAAGATGTCTGTGATGATTTC 58.532 38.462 0.00 0.00 0.00 2.17
794 824 5.791367 ACAAGATGTCTGTGATGATTTCG 57.209 39.130 0.00 0.00 0.00 3.46
795 825 4.093998 ACAAGATGTCTGTGATGATTTCGC 59.906 41.667 0.00 0.00 35.31 4.70
796 826 3.201290 AGATGTCTGTGATGATTTCGCC 58.799 45.455 0.00 0.00 33.71 5.54
797 827 2.470983 TGTCTGTGATGATTTCGCCA 57.529 45.000 0.00 0.00 33.71 5.69
798 828 2.777094 TGTCTGTGATGATTTCGCCAA 58.223 42.857 0.00 0.00 33.71 4.52
799 829 3.346315 TGTCTGTGATGATTTCGCCAAT 58.654 40.909 0.00 0.00 33.71 3.16
800 830 3.374988 TGTCTGTGATGATTTCGCCAATC 59.625 43.478 1.30 1.30 41.76 2.67
801 831 3.624861 GTCTGTGATGATTTCGCCAATCT 59.375 43.478 8.19 0.00 41.91 2.40
802 832 3.873361 TCTGTGATGATTTCGCCAATCTC 59.127 43.478 8.19 5.01 41.91 2.75
803 833 3.608796 TGTGATGATTTCGCCAATCTCA 58.391 40.909 8.19 6.84 41.91 3.27
804 834 4.009002 TGTGATGATTTCGCCAATCTCAA 58.991 39.130 8.19 0.00 41.91 3.02
805 835 4.095334 TGTGATGATTTCGCCAATCTCAAG 59.905 41.667 8.19 0.00 41.91 3.02
806 836 4.333649 GTGATGATTTCGCCAATCTCAAGA 59.666 41.667 8.19 0.00 41.91 3.02
807 837 5.008415 GTGATGATTTCGCCAATCTCAAGAT 59.992 40.000 8.19 0.00 41.91 2.40
808 838 6.203530 GTGATGATTTCGCCAATCTCAAGATA 59.796 38.462 8.19 0.00 41.91 1.98
809 839 6.938596 TGATGATTTCGCCAATCTCAAGATAT 59.061 34.615 8.19 0.00 41.91 1.63
810 840 7.446319 TGATGATTTCGCCAATCTCAAGATATT 59.554 33.333 8.19 0.00 41.91 1.28
811 841 7.194607 TGATTTCGCCAATCTCAAGATATTC 57.805 36.000 8.19 0.00 41.91 1.75
812 842 6.994496 TGATTTCGCCAATCTCAAGATATTCT 59.006 34.615 8.19 0.00 41.91 2.40
813 843 6.609237 TTTCGCCAATCTCAAGATATTCTG 57.391 37.500 0.00 0.00 33.73 3.02
814 844 5.282055 TCGCCAATCTCAAGATATTCTGT 57.718 39.130 0.00 0.00 33.73 3.41
815 845 5.052481 TCGCCAATCTCAAGATATTCTGTG 58.948 41.667 0.00 0.00 33.73 3.66
816 846 4.212847 CGCCAATCTCAAGATATTCTGTGG 59.787 45.833 0.00 0.00 33.73 4.17
817 847 5.128919 GCCAATCTCAAGATATTCTGTGGT 58.871 41.667 7.59 0.00 33.73 4.16
818 848 5.008415 GCCAATCTCAAGATATTCTGTGGTG 59.992 44.000 7.59 0.00 33.73 4.17
819 849 6.351711 CCAATCTCAAGATATTCTGTGGTGA 58.648 40.000 0.00 0.00 33.73 4.02
820 850 6.996879 CCAATCTCAAGATATTCTGTGGTGAT 59.003 38.462 0.00 0.00 33.73 3.06
821 851 7.501559 CCAATCTCAAGATATTCTGTGGTGATT 59.498 37.037 0.00 0.00 33.73 2.57
822 852 8.900781 CAATCTCAAGATATTCTGTGGTGATTT 58.099 33.333 0.00 0.00 33.73 2.17
823 853 8.674263 ATCTCAAGATATTCTGTGGTGATTTC 57.326 34.615 0.00 0.00 32.01 2.17
824 854 6.758416 TCTCAAGATATTCTGTGGTGATTTCG 59.242 38.462 0.00 0.00 0.00 3.46
825 855 5.294306 TCAAGATATTCTGTGGTGATTTCGC 59.706 40.000 0.00 0.00 0.00 4.70
826 856 4.130118 AGATATTCTGTGGTGATTTCGCC 58.870 43.478 3.13 3.13 46.40 5.54
835 865 3.411415 GGTGATTTCGCCAATCTCAAG 57.589 47.619 5.28 0.00 45.55 3.02
836 866 3.009723 GGTGATTTCGCCAATCTCAAGA 58.990 45.455 5.28 0.00 45.55 3.02
837 867 3.629398 GGTGATTTCGCCAATCTCAAGAT 59.371 43.478 5.28 0.00 45.55 2.40
838 868 4.816385 GGTGATTTCGCCAATCTCAAGATA 59.184 41.667 5.28 0.00 45.55 1.98
839 869 5.471456 GGTGATTTCGCCAATCTCAAGATAT 59.529 40.000 5.28 0.00 45.55 1.63
840 870 6.016777 GGTGATTTCGCCAATCTCAAGATATT 60.017 38.462 5.28 0.00 45.55 1.28
841 871 7.074502 GTGATTTCGCCAATCTCAAGATATTC 58.925 38.462 8.19 0.00 41.91 1.75
842 872 6.994496 TGATTTCGCCAATCTCAAGATATTCT 59.006 34.615 8.19 0.00 41.91 2.40
843 873 6.609237 TTTCGCCAATCTCAAGATATTCTG 57.391 37.500 0.00 0.00 33.73 3.02
844 874 5.282055 TCGCCAATCTCAAGATATTCTGT 57.718 39.130 0.00 0.00 33.73 3.41
845 875 5.674525 TCGCCAATCTCAAGATATTCTGTT 58.325 37.500 0.00 0.00 33.73 3.16
846 876 5.525012 TCGCCAATCTCAAGATATTCTGTTG 59.475 40.000 0.00 0.00 33.73 3.33
847 877 5.277683 CGCCAATCTCAAGATATTCTGTTGG 60.278 44.000 0.00 0.00 33.73 3.77
848 878 5.591877 GCCAATCTCAAGATATTCTGTTGGT 59.408 40.000 0.00 0.00 33.73 3.67
849 879 6.459298 GCCAATCTCAAGATATTCTGTTGGTG 60.459 42.308 0.00 0.00 33.73 4.17
850 880 6.600822 CCAATCTCAAGATATTCTGTTGGTGT 59.399 38.462 0.00 0.00 33.73 4.16
851 881 7.770433 CCAATCTCAAGATATTCTGTTGGTGTA 59.230 37.037 0.00 0.00 33.73 2.90
852 882 9.166173 CAATCTCAAGATATTCTGTTGGTGTAA 57.834 33.333 0.00 0.00 33.73 2.41
853 883 9.911788 AATCTCAAGATATTCTGTTGGTGTAAT 57.088 29.630 0.00 0.00 33.73 1.89
854 884 8.948631 TCTCAAGATATTCTGTTGGTGTAATC 57.051 34.615 0.00 0.00 0.00 1.75
855 885 8.762645 TCTCAAGATATTCTGTTGGTGTAATCT 58.237 33.333 0.00 0.00 0.00 2.40
856 886 8.948631 TCAAGATATTCTGTTGGTGTAATCTC 57.051 34.615 0.00 0.00 0.00 2.75
857 887 7.706607 TCAAGATATTCTGTTGGTGTAATCTCG 59.293 37.037 0.00 0.00 0.00 4.04
858 888 7.348080 AGATATTCTGTTGGTGTAATCTCGA 57.652 36.000 0.00 0.00 0.00 4.04
859 889 7.782049 AGATATTCTGTTGGTGTAATCTCGAA 58.218 34.615 0.00 0.00 0.00 3.71
860 890 7.923344 AGATATTCTGTTGGTGTAATCTCGAAG 59.077 37.037 0.00 0.00 0.00 3.79
861 891 4.188247 TCTGTTGGTGTAATCTCGAAGG 57.812 45.455 0.00 0.00 0.00 3.46
862 892 3.576982 TCTGTTGGTGTAATCTCGAAGGT 59.423 43.478 0.00 0.00 0.00 3.50
863 893 3.659786 TGTTGGTGTAATCTCGAAGGTG 58.340 45.455 0.00 0.00 0.00 4.00
864 894 2.380084 TGGTGTAATCTCGAAGGTGC 57.620 50.000 0.00 0.00 0.00 5.01
865 895 1.899814 TGGTGTAATCTCGAAGGTGCT 59.100 47.619 0.00 0.00 0.00 4.40
866 896 2.094182 TGGTGTAATCTCGAAGGTGCTC 60.094 50.000 0.00 0.00 0.00 4.26
867 897 2.094182 GGTGTAATCTCGAAGGTGCTCA 60.094 50.000 0.00 0.00 0.00 4.26
868 898 3.430929 GGTGTAATCTCGAAGGTGCTCAT 60.431 47.826 0.00 0.00 0.00 2.90
869 899 4.202121 GGTGTAATCTCGAAGGTGCTCATA 60.202 45.833 0.00 0.00 0.00 2.15
870 900 4.740695 GTGTAATCTCGAAGGTGCTCATAC 59.259 45.833 0.00 0.00 0.00 2.39
871 901 2.783828 ATCTCGAAGGTGCTCATACG 57.216 50.000 0.00 0.00 0.00 3.06
872 902 0.738975 TCTCGAAGGTGCTCATACGG 59.261 55.000 0.00 0.00 0.00 4.02
873 903 0.456221 CTCGAAGGTGCTCATACGGT 59.544 55.000 0.00 0.00 0.00 4.83
874 904 0.172578 TCGAAGGTGCTCATACGGTG 59.827 55.000 0.00 0.00 0.00 4.94
875 905 0.108804 CGAAGGTGCTCATACGGTGT 60.109 55.000 0.00 0.00 0.00 4.16
876 906 1.133598 CGAAGGTGCTCATACGGTGTA 59.866 52.381 0.00 0.00 0.00 2.90
877 907 2.537401 GAAGGTGCTCATACGGTGTAC 58.463 52.381 0.00 0.00 0.00 2.90
888 918 2.232296 CGGTGTACGTGTGTGCGTT 61.232 57.895 0.00 0.00 43.04 4.84
889 919 1.561250 GGTGTACGTGTGTGCGTTC 59.439 57.895 0.00 0.00 43.04 3.95
890 920 1.197428 GTGTACGTGTGTGCGTTCG 59.803 57.895 0.00 0.00 43.04 3.95
891 921 1.945169 TGTACGTGTGTGCGTTCGG 60.945 57.895 0.00 0.00 43.04 4.30
892 922 1.945662 GTACGTGTGTGCGTTCGGT 60.946 57.895 0.00 0.00 43.04 4.69
893 923 1.945169 TACGTGTGTGCGTTCGGTG 60.945 57.895 0.00 0.00 43.04 4.94
894 924 2.610700 TACGTGTGTGCGTTCGGTGT 62.611 55.000 0.00 0.00 43.04 4.16
895 925 2.323105 GTGTGTGCGTTCGGTGTG 59.677 61.111 0.00 0.00 0.00 3.82
896 926 2.168503 GTGTGTGCGTTCGGTGTGA 61.169 57.895 0.00 0.00 0.00 3.58
897 927 2.168503 TGTGTGCGTTCGGTGTGAC 61.169 57.895 0.00 0.00 0.00 3.67
898 928 2.586635 TGTGCGTTCGGTGTGACC 60.587 61.111 0.00 0.00 34.05 4.02
899 929 2.586635 GTGCGTTCGGTGTGACCA 60.587 61.111 0.00 0.00 38.47 4.02
900 930 1.959226 GTGCGTTCGGTGTGACCAT 60.959 57.895 0.00 0.00 38.47 3.55
901 931 1.666553 TGCGTTCGGTGTGACCATC 60.667 57.895 0.00 0.00 38.47 3.51
902 932 1.374252 GCGTTCGGTGTGACCATCT 60.374 57.895 0.00 0.00 38.47 2.90
903 933 0.949105 GCGTTCGGTGTGACCATCTT 60.949 55.000 0.00 0.00 38.47 2.40
904 934 1.068474 CGTTCGGTGTGACCATCTTC 58.932 55.000 0.00 0.00 38.47 2.87
905 935 1.068474 GTTCGGTGTGACCATCTTCG 58.932 55.000 0.00 0.00 38.47 3.79
906 936 0.963225 TTCGGTGTGACCATCTTCGA 59.037 50.000 0.00 0.00 38.47 3.71
907 937 0.242825 TCGGTGTGACCATCTTCGAC 59.757 55.000 0.00 0.00 38.47 4.20
908 938 0.243907 CGGTGTGACCATCTTCGACT 59.756 55.000 0.00 0.00 38.47 4.18
909 939 1.714794 GGTGTGACCATCTTCGACTG 58.285 55.000 0.00 0.00 38.42 3.51
910 940 1.000955 GGTGTGACCATCTTCGACTGT 59.999 52.381 0.00 0.00 38.42 3.55
911 941 2.230508 GGTGTGACCATCTTCGACTGTA 59.769 50.000 0.00 0.00 38.42 2.74
912 942 3.243336 GTGTGACCATCTTCGACTGTAC 58.757 50.000 0.00 0.00 0.00 2.90
913 943 3.057456 GTGTGACCATCTTCGACTGTACT 60.057 47.826 0.00 0.00 0.00 2.73
914 944 3.572682 TGTGACCATCTTCGACTGTACTT 59.427 43.478 0.00 0.00 0.00 2.24
915 945 4.763279 TGTGACCATCTTCGACTGTACTTA 59.237 41.667 0.00 0.00 0.00 2.24
916 946 5.242171 TGTGACCATCTTCGACTGTACTTAA 59.758 40.000 0.00 0.00 0.00 1.85
917 947 6.154445 GTGACCATCTTCGACTGTACTTAAA 58.846 40.000 0.00 0.00 0.00 1.52
918 948 6.308282 GTGACCATCTTCGACTGTACTTAAAG 59.692 42.308 0.00 0.00 0.00 1.85
919 949 6.208007 TGACCATCTTCGACTGTACTTAAAGA 59.792 38.462 0.00 0.00 0.00 2.52
920 950 6.622549 ACCATCTTCGACTGTACTTAAAGAG 58.377 40.000 0.00 0.00 0.00 2.85
921 951 6.433404 ACCATCTTCGACTGTACTTAAAGAGA 59.567 38.462 0.00 0.00 0.00 3.10
922 952 7.039923 ACCATCTTCGACTGTACTTAAAGAGAA 60.040 37.037 0.00 0.00 0.00 2.87
923 953 7.813148 CCATCTTCGACTGTACTTAAAGAGAAA 59.187 37.037 0.00 0.00 0.00 2.52
924 954 9.360093 CATCTTCGACTGTACTTAAAGAGAAAT 57.640 33.333 0.00 0.00 0.00 2.17
932 962 8.709646 ACTGTACTTAAAGAGAAATAACTTGCG 58.290 33.333 0.00 0.00 0.00 4.85
933 963 8.597662 TGTACTTAAAGAGAAATAACTTGCGT 57.402 30.769 0.00 0.00 0.00 5.24
934 964 8.706035 TGTACTTAAAGAGAAATAACTTGCGTC 58.294 33.333 0.00 0.00 0.00 5.19
935 965 7.130303 ACTTAAAGAGAAATAACTTGCGTCC 57.870 36.000 0.00 0.00 0.00 4.79
936 966 6.708949 ACTTAAAGAGAAATAACTTGCGTCCA 59.291 34.615 0.00 0.00 0.00 4.02
937 967 5.613358 AAAGAGAAATAACTTGCGTCCAG 57.387 39.130 0.00 0.00 0.00 3.86
948 978 4.502263 CGTCCAGCATCGACATGT 57.498 55.556 0.00 0.00 31.86 3.21
949 979 2.001357 CGTCCAGCATCGACATGTG 58.999 57.895 1.15 0.00 31.86 3.21
950 980 0.737367 CGTCCAGCATCGACATGTGT 60.737 55.000 1.15 0.00 31.86 3.72
951 981 0.723414 GTCCAGCATCGACATGTGTG 59.277 55.000 1.15 0.09 31.86 3.82
952 982 0.391528 TCCAGCATCGACATGTGTGG 60.392 55.000 1.15 0.29 37.49 4.17
953 983 0.674581 CCAGCATCGACATGTGTGGT 60.675 55.000 1.15 1.96 34.09 4.16
954 984 1.159285 CAGCATCGACATGTGTGGTT 58.841 50.000 1.15 0.00 31.86 3.67
955 985 1.536766 CAGCATCGACATGTGTGGTTT 59.463 47.619 1.15 0.00 31.86 3.27
956 986 2.030893 CAGCATCGACATGTGTGGTTTT 60.031 45.455 1.15 0.00 31.86 2.43
957 987 2.622942 AGCATCGACATGTGTGGTTTTT 59.377 40.909 1.15 0.00 31.86 1.94
978 1008 4.335082 TTTTTCTCGCACCGATACATTG 57.665 40.909 0.00 0.00 34.61 2.82
979 1009 1.286501 TTCTCGCACCGATACATTGC 58.713 50.000 0.00 0.00 34.61 3.56
980 1010 0.459899 TCTCGCACCGATACATTGCT 59.540 50.000 0.00 0.00 34.61 3.91
981 1011 0.855349 CTCGCACCGATACATTGCTC 59.145 55.000 0.00 0.00 34.61 4.26
982 1012 0.174617 TCGCACCGATACATTGCTCA 59.825 50.000 0.00 0.00 33.90 4.26
983 1013 0.301687 CGCACCGATACATTGCTCAC 59.698 55.000 0.00 0.00 33.90 3.51
984 1014 0.301687 GCACCGATACATTGCTCACG 59.698 55.000 0.00 0.00 33.26 4.35
985 1015 0.301687 CACCGATACATTGCTCACGC 59.698 55.000 0.00 0.00 0.00 5.34
986 1016 1.145759 ACCGATACATTGCTCACGCG 61.146 55.000 3.53 3.53 39.65 6.01
987 1017 1.559814 CGATACATTGCTCACGCGG 59.440 57.895 12.47 0.00 39.65 6.46
988 1018 1.145759 CGATACATTGCTCACGCGGT 61.146 55.000 12.47 0.00 39.65 5.68
989 1019 0.301687 GATACATTGCTCACGCGGTG 59.698 55.000 12.47 6.71 39.65 4.94
990 1020 0.108377 ATACATTGCTCACGCGGTGA 60.108 50.000 12.47 11.08 40.50 4.02
991 1021 0.108377 TACATTGCTCACGCGGTGAT 60.108 50.000 12.47 0.00 41.94 3.06
992 1022 0.108377 ACATTGCTCACGCGGTGATA 60.108 50.000 12.47 1.76 41.94 2.15
1010 1040 6.301687 GTGATAGACACGATGCTACTAGAA 57.698 41.667 0.00 0.00 39.78 2.10
1012 1042 6.633634 GTGATAGACACGATGCTACTAGAAAC 59.366 42.308 0.00 0.00 39.78 2.78
1014 1044 7.713942 TGATAGACACGATGCTACTAGAAACTA 59.286 37.037 0.00 0.00 0.00 2.24
1015 1045 6.945938 AGACACGATGCTACTAGAAACTAT 57.054 37.500 0.00 0.00 0.00 2.12
1033 1063 3.764434 ACTATACAGACCACACACCTGAG 59.236 47.826 0.00 0.00 0.00 3.35
1039 1069 1.893808 CCACACACCTGAGCACACC 60.894 63.158 0.00 0.00 0.00 4.16
1613 1657 5.219343 TCCGAGATGACAATATTGCTCAT 57.781 39.130 22.54 22.54 34.21 2.90
1614 1658 5.614308 TCCGAGATGACAATATTGCTCATT 58.386 37.500 22.91 16.62 32.81 2.57
1615 1659 5.698089 TCCGAGATGACAATATTGCTCATTC 59.302 40.000 22.91 20.15 32.81 2.67
1640 1684 9.148879 TCTTCTTTGTAATAAATGGGACCAAAA 57.851 29.630 0.00 0.00 0.00 2.44
1679 1723 0.251165 TTTGTACCTGCAGGAAGGCC 60.251 55.000 39.19 19.80 41.46 5.19
1749 1793 9.624373 ATGTTCAGTGCATTTAATAAGAGATCT 57.376 29.630 0.00 0.00 0.00 2.75
1750 1794 9.102757 TGTTCAGTGCATTTAATAAGAGATCTC 57.897 33.333 15.29 15.29 0.00 2.75
1751 1795 9.102757 GTTCAGTGCATTTAATAAGAGATCTCA 57.897 33.333 24.39 5.31 0.00 3.27
1752 1796 9.842775 TTCAGTGCATTTAATAAGAGATCTCAT 57.157 29.630 24.39 15.43 0.00 2.90
1753 1797 9.842775 TCAGTGCATTTAATAAGAGATCTCATT 57.157 29.630 24.39 17.32 0.00 2.57
1840 1887 9.716531 TCTTCTATATTGCTTGGTCAATCTATG 57.283 33.333 0.00 0.00 37.75 2.23
1925 1980 2.226437 TGCTTTGCTCGGTCATTTCTTC 59.774 45.455 0.00 0.00 0.00 2.87
2018 2073 2.164422 GCCAATCTTAGCAACCAAGGAC 59.836 50.000 0.00 0.00 0.00 3.85
2036 2091 6.204882 CCAAGGACGAGGTAATTAAATCATCC 59.795 42.308 5.54 5.54 0.00 3.51
2044 2099 6.010219 AGGTAATTAAATCATCCGATTGGGG 58.990 40.000 0.00 0.00 41.12 4.96
2134 2189 2.158841 GCCGAAGTCGATGCTGTAAAAA 59.841 45.455 1.43 0.00 43.02 1.94
2150 2205 4.755123 TGTAAAAAGAGTTACTGAGGCTGC 59.245 41.667 0.00 0.00 35.41 5.25
2191 2246 1.546029 TGGATCGAGTGGTCTTGACAG 59.454 52.381 3.08 0.00 36.97 3.51
2233 2288 3.826157 CCTGTGGCAGGTTTGAATCTTTA 59.174 43.478 6.99 0.00 45.82 1.85
2253 2308 3.508845 AACAACACCCTATTCTGCTGT 57.491 42.857 0.00 0.00 0.00 4.40
2286 2341 2.374184 TGGACACCTGTCTTTGTTTGG 58.626 47.619 5.44 0.00 44.20 3.28
2577 2632 1.199789 TGACTTCCGCATTGCATCAAC 59.800 47.619 9.69 0.00 0.00 3.18
2773 2828 2.746277 CACAACAGGTAGCCCGCC 60.746 66.667 0.00 0.00 35.12 6.13
2839 2894 5.473504 TCTGAATTCTTTACAGAAAGGCACC 59.526 40.000 7.05 0.00 42.53 5.01
2866 2921 6.463995 TGTTTTGCTTTAATCAGTGGTCTT 57.536 33.333 0.00 0.00 0.00 3.01
3006 3065 2.564947 AGCAGACACCTTCTAGAGTTGG 59.435 50.000 0.00 0.00 31.12 3.77
3139 3198 6.888088 TCAGTCACATCAAATTCTTCCATGAT 59.112 34.615 0.00 0.00 32.94 2.45
3194 3253 4.021981 GCTTCCAGGTAAACTTTTGCATCT 60.022 41.667 0.00 0.00 0.00 2.90
3358 3417 0.609957 CCACCTTGGCTGCAATGAGA 60.610 55.000 0.50 0.00 0.00 3.27
3376 3435 5.883685 TGAGAGCCAAGATAACTGATGAT 57.116 39.130 0.00 0.00 0.00 2.45
3724 3784 4.003648 CGAGGTTGAATTTAGCCTTCACT 58.996 43.478 7.07 0.00 32.57 3.41
3831 3891 2.591915 ACGACAAGGATCCCATCGT 58.408 52.632 23.03 23.03 40.96 3.73
3836 3896 0.178767 CAAGGATCCCATCGTGCTGA 59.821 55.000 8.55 0.00 0.00 4.26
3851 3911 1.970917 GCTGATGGACTTGGCGAACG 61.971 60.000 0.00 0.00 0.00 3.95
3892 3952 1.227556 GTGTGACCGAACAGCTGGT 60.228 57.895 19.93 12.79 42.42 4.00
3903 3963 4.908687 AGCTGGTGTTGCGTCGCA 62.909 61.111 17.58 17.58 36.47 5.10
3909 3969 3.109547 TGTTGCGTCGCATCCGTC 61.110 61.111 22.41 9.84 38.76 4.79
3922 3982 4.135153 CCGTCTCCAGGTGAGCGG 62.135 72.222 14.25 14.25 46.54 5.52
4022 4154 2.488836 AGGACTGTCGGGGGATAATTT 58.511 47.619 1.07 0.00 0.00 1.82
4055 4191 3.228453 AGTTGTTACGTGGAAGAGGAGA 58.772 45.455 0.00 0.00 0.00 3.71
4058 4194 5.657302 AGTTGTTACGTGGAAGAGGAGATAT 59.343 40.000 0.00 0.00 0.00 1.63
4083 4219 1.941325 CGATCCTTTGGCTAGGTGAC 58.059 55.000 6.21 0.00 36.63 3.67
4108 4272 2.282180 AAATTGACACGGCCGGCT 60.282 55.556 31.76 14.11 0.00 5.52
4109 4273 2.527547 GAAATTGACACGGCCGGCTG 62.528 60.000 33.73 33.73 0.00 4.85
4232 4396 3.436055 GGCCCGTGCGTTGCAATA 61.436 61.111 0.59 0.00 41.47 1.90
4234 4398 1.081108 GCCCGTGCGTTGCAATAAA 60.081 52.632 0.59 0.00 41.47 1.40
4235 4399 0.664767 GCCCGTGCGTTGCAATAAAA 60.665 50.000 0.59 0.00 41.47 1.52
4236 4400 1.335935 CCCGTGCGTTGCAATAAAAG 58.664 50.000 0.59 0.00 41.47 2.27
4237 4401 1.335506 CCCGTGCGTTGCAATAAAAGT 60.336 47.619 0.59 0.00 41.47 2.66
4238 4402 1.713404 CCGTGCGTTGCAATAAAAGTG 59.287 47.619 0.59 0.00 41.47 3.16
4239 4403 1.122323 CGTGCGTTGCAATAAAAGTGC 59.878 47.619 0.59 0.00 41.47 4.40
4240 4404 1.455408 GTGCGTTGCAATAAAAGTGCC 59.545 47.619 0.59 0.00 41.47 5.01
4241 4405 0.707822 GCGTTGCAATAAAAGTGCCG 59.292 50.000 0.59 0.00 41.49 5.69
4242 4406 1.928595 GCGTTGCAATAAAAGTGCCGT 60.929 47.619 0.59 0.00 41.49 5.68
4243 4407 2.389998 CGTTGCAATAAAAGTGCCGTT 58.610 42.857 0.59 0.00 41.49 4.44
4244 4408 2.152868 CGTTGCAATAAAAGTGCCGTTG 59.847 45.455 0.59 0.00 41.49 4.10
4245 4409 1.777101 TGCAATAAAAGTGCCGTTGC 58.223 45.000 0.00 0.00 43.93 4.17
4259 4423 3.804873 TGCCGTTGCAATAAAAGGAAAAC 59.195 39.130 0.59 0.00 46.66 2.43
4286 4455 7.606135 TTGATAATCTTCAATGGCCATGATT 57.394 32.000 24.49 24.49 30.82 2.57
4307 4476 3.698029 ATATTTTGCTGCATCACCGAC 57.302 42.857 1.84 0.00 0.00 4.79
4308 4477 0.168788 ATTTTGCTGCATCACCGACG 59.831 50.000 1.84 0.00 0.00 5.12
4322 4491 2.417586 CACCGACGTACACTATCACTCA 59.582 50.000 0.00 0.00 0.00 3.41
4330 4499 6.452242 ACGTACACTATCACTCACAATTTCA 58.548 36.000 0.00 0.00 0.00 2.69
4476 4832 1.830477 GACATTTTAAGGGCCCATGCA 59.170 47.619 27.56 3.45 40.13 3.96
4480 4836 0.540923 TTTAAGGGCCCATGCATTGC 59.459 50.000 27.56 9.06 40.13 3.56
4488 4844 1.539496 GCCCATGCATTGCAATGGTAG 60.539 52.381 34.23 14.73 43.62 3.18
4490 4846 2.631062 CCCATGCATTGCAATGGTAGAT 59.369 45.455 34.23 0.72 43.62 1.98
4491 4847 3.070446 CCCATGCATTGCAATGGTAGATT 59.930 43.478 34.23 0.00 43.62 2.40
4492 4848 4.443739 CCCATGCATTGCAATGGTAGATTT 60.444 41.667 34.23 0.00 43.62 2.17
4523 4879 0.842030 TCTCCAGTGGCCAAGACCAT 60.842 55.000 7.24 0.00 43.01 3.55
4538 4894 4.644103 AGACCATATTTTGCTGCATCAC 57.356 40.909 1.84 0.00 0.00 3.06
4735 5091 9.546428 AAGGGACATTTAAAAAGTCATTTCAAG 57.454 29.630 19.54 0.00 34.04 3.02
4753 5136 7.539712 TTTCAAGACTTGATTTCCTATAGCG 57.460 36.000 18.38 0.00 39.84 4.26
4756 5139 3.067833 GACTTGATTTCCTATAGCGCCC 58.932 50.000 2.29 0.00 0.00 6.13
4761 5144 4.669700 TGATTTCCTATAGCGCCCTAGTA 58.330 43.478 2.29 0.00 0.00 1.82
4763 5146 5.541101 TGATTTCCTATAGCGCCCTAGTAAA 59.459 40.000 2.29 5.43 0.00 2.01
4764 5147 5.874897 TTTCCTATAGCGCCCTAGTAAAA 57.125 39.130 2.29 5.79 0.00 1.52
4793 5180 1.529244 AAACTGCACTGCTGGACCC 60.529 57.895 12.09 0.00 0.00 4.46
4825 5212 7.281098 AGCTAGATTGATGAATGATGTGTCTT 58.719 34.615 0.00 0.00 0.00 3.01
4826 5213 7.774157 AGCTAGATTGATGAATGATGTGTCTTT 59.226 33.333 0.00 0.00 0.00 2.52
4828 5215 7.330900 AGATTGATGAATGATGTGTCTTTCC 57.669 36.000 0.00 0.00 37.59 3.13
4854 5241 1.893168 TAGCGTCGCGGCAGAAAAAC 61.893 55.000 12.89 0.00 34.64 2.43
4858 5245 1.526986 CGTCGCGGCAGAAAAACATAG 60.527 52.381 12.89 0.00 0.00 2.23
4872 5259 9.396022 CAGAAAAACATAGTTATGTATGGAGGT 57.604 33.333 5.28 0.00 45.55 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
135 136 4.083003 GGCGATGAAACAAATGTTCCTGTA 60.083 41.667 0.00 0.00 37.25 2.74
233 234 8.641499 TTTCAAATGTTAAAAACTACTGCTGG 57.359 30.769 0.00 0.00 0.00 4.85
308 315 1.134946 GGGGCAAATCTGAATCGGTTG 59.865 52.381 0.00 0.00 0.00 3.77
497 519 2.489329 GCTCACCATAGCAAAAGCTTGA 59.511 45.455 0.00 0.00 42.30 3.02
603 629 7.162082 TGGAGTACCAACAAAAATGTGTTTTT 58.838 30.769 0.00 0.00 43.78 1.94
684 712 6.667848 TCCTATCTCTCATGTAAAGAACCACA 59.332 38.462 0.00 0.00 0.00 4.17
693 721 9.475620 TTCACTACTTTCCTATCTCTCATGTAA 57.524 33.333 0.00 0.00 0.00 2.41
698 726 7.397476 ACATGTTCACTACTTTCCTATCTCTCA 59.603 37.037 0.00 0.00 0.00 3.27
699 727 7.777095 ACATGTTCACTACTTTCCTATCTCTC 58.223 38.462 0.00 0.00 0.00 3.20
737 767 3.058432 CGTCTCCTCTTACTGAACGAACA 60.058 47.826 0.00 0.00 0.00 3.18
738 768 3.058363 ACGTCTCCTCTTACTGAACGAAC 60.058 47.826 0.00 0.00 0.00 3.95
739 769 3.144506 ACGTCTCCTCTTACTGAACGAA 58.855 45.455 0.00 0.00 0.00 3.85
740 770 2.775890 ACGTCTCCTCTTACTGAACGA 58.224 47.619 0.00 0.00 0.00 3.85
741 771 3.058432 TGAACGTCTCCTCTTACTGAACG 60.058 47.826 0.00 0.00 0.00 3.95
742 772 4.228317 GTGAACGTCTCCTCTTACTGAAC 58.772 47.826 0.00 0.00 0.00 3.18
743 773 3.058432 CGTGAACGTCTCCTCTTACTGAA 60.058 47.826 0.00 0.00 34.11 3.02
744 774 2.483106 CGTGAACGTCTCCTCTTACTGA 59.517 50.000 0.00 0.00 34.11 3.41
745 775 2.852748 CGTGAACGTCTCCTCTTACTG 58.147 52.381 0.00 0.00 34.11 2.74
758 788 1.757574 TCTTGTAACCGACGTGAACG 58.242 50.000 0.00 0.40 46.33 3.95
759 789 3.054878 ACATCTTGTAACCGACGTGAAC 58.945 45.455 0.00 0.00 0.00 3.18
760 790 3.005050 AGACATCTTGTAACCGACGTGAA 59.995 43.478 0.00 0.00 0.00 3.18
761 791 2.555325 AGACATCTTGTAACCGACGTGA 59.445 45.455 0.00 0.00 0.00 4.35
762 792 2.661675 CAGACATCTTGTAACCGACGTG 59.338 50.000 0.00 0.00 0.00 4.49
763 793 2.295349 ACAGACATCTTGTAACCGACGT 59.705 45.455 0.00 0.00 0.00 4.34
764 794 2.661675 CACAGACATCTTGTAACCGACG 59.338 50.000 0.00 0.00 0.00 5.12
765 795 3.909430 TCACAGACATCTTGTAACCGAC 58.091 45.455 0.00 0.00 0.00 4.79
766 796 4.219725 TCATCACAGACATCTTGTAACCGA 59.780 41.667 0.00 0.00 0.00 4.69
767 797 4.494484 TCATCACAGACATCTTGTAACCG 58.506 43.478 0.00 0.00 0.00 4.44
768 798 6.992063 AATCATCACAGACATCTTGTAACC 57.008 37.500 0.00 0.00 0.00 2.85
769 799 7.176075 CGAAATCATCACAGACATCTTGTAAC 58.824 38.462 0.00 0.00 0.00 2.50
770 800 6.183360 GCGAAATCATCACAGACATCTTGTAA 60.183 38.462 0.00 0.00 0.00 2.41
771 801 5.291858 GCGAAATCATCACAGACATCTTGTA 59.708 40.000 0.00 0.00 0.00 2.41
772 802 4.093998 GCGAAATCATCACAGACATCTTGT 59.906 41.667 0.00 0.00 0.00 3.16
773 803 4.495349 GGCGAAATCATCACAGACATCTTG 60.495 45.833 0.00 0.00 0.00 3.02
774 804 3.624861 GGCGAAATCATCACAGACATCTT 59.375 43.478 0.00 0.00 0.00 2.40
775 805 3.201290 GGCGAAATCATCACAGACATCT 58.799 45.455 0.00 0.00 0.00 2.90
776 806 2.938451 TGGCGAAATCATCACAGACATC 59.062 45.455 0.00 0.00 0.00 3.06
777 807 2.989909 TGGCGAAATCATCACAGACAT 58.010 42.857 0.00 0.00 0.00 3.06
778 808 2.470983 TGGCGAAATCATCACAGACA 57.529 45.000 0.00 0.00 0.00 3.41
779 809 3.624861 AGATTGGCGAAATCATCACAGAC 59.375 43.478 11.91 0.00 46.21 3.51
780 810 3.873361 GAGATTGGCGAAATCATCACAGA 59.127 43.478 11.91 0.00 46.21 3.41
781 811 3.624410 TGAGATTGGCGAAATCATCACAG 59.376 43.478 11.91 0.00 46.21 3.66
782 812 3.608796 TGAGATTGGCGAAATCATCACA 58.391 40.909 11.91 5.31 46.21 3.58
783 813 4.333649 TCTTGAGATTGGCGAAATCATCAC 59.666 41.667 11.91 3.40 46.21 3.06
784 814 4.516323 TCTTGAGATTGGCGAAATCATCA 58.484 39.130 11.91 9.63 46.21 3.07
785 815 5.686159 ATCTTGAGATTGGCGAAATCATC 57.314 39.130 11.91 7.80 46.21 2.92
786 816 7.664731 AGAATATCTTGAGATTGGCGAAATCAT 59.335 33.333 11.91 1.47 46.21 2.45
787 817 6.994496 AGAATATCTTGAGATTGGCGAAATCA 59.006 34.615 11.91 4.94 46.21 2.57
788 818 7.041508 ACAGAATATCTTGAGATTGGCGAAATC 60.042 37.037 0.00 3.21 44.44 2.17
789 819 6.769822 ACAGAATATCTTGAGATTGGCGAAAT 59.230 34.615 0.00 0.00 36.05 2.17
790 820 6.037500 CACAGAATATCTTGAGATTGGCGAAA 59.962 38.462 0.00 0.00 36.05 3.46
791 821 5.525012 CACAGAATATCTTGAGATTGGCGAA 59.475 40.000 0.00 0.00 36.05 4.70
792 822 5.052481 CACAGAATATCTTGAGATTGGCGA 58.948 41.667 0.00 0.00 36.05 5.54
793 823 4.212847 CCACAGAATATCTTGAGATTGGCG 59.787 45.833 0.00 0.00 36.05 5.69
794 824 5.008415 CACCACAGAATATCTTGAGATTGGC 59.992 44.000 0.00 0.00 36.05 4.52
795 825 6.351711 TCACCACAGAATATCTTGAGATTGG 58.648 40.000 0.00 2.71 36.05 3.16
796 826 8.447924 AATCACCACAGAATATCTTGAGATTG 57.552 34.615 0.00 0.00 36.05 2.67
797 827 9.118300 GAAATCACCACAGAATATCTTGAGATT 57.882 33.333 0.00 0.00 36.05 2.40
798 828 7.440556 CGAAATCACCACAGAATATCTTGAGAT 59.559 37.037 0.00 0.00 38.51 2.75
799 829 6.758416 CGAAATCACCACAGAATATCTTGAGA 59.242 38.462 0.00 0.00 0.00 3.27
800 830 6.510799 GCGAAATCACCACAGAATATCTTGAG 60.511 42.308 0.00 0.00 0.00 3.02
801 831 5.294306 GCGAAATCACCACAGAATATCTTGA 59.706 40.000 0.00 0.00 0.00 3.02
802 832 5.504665 GGCGAAATCACCACAGAATATCTTG 60.505 44.000 0.00 0.00 0.00 3.02
803 833 4.576463 GGCGAAATCACCACAGAATATCTT 59.424 41.667 0.00 0.00 0.00 2.40
804 834 4.130118 GGCGAAATCACCACAGAATATCT 58.870 43.478 0.00 0.00 0.00 1.98
805 835 3.876914 TGGCGAAATCACCACAGAATATC 59.123 43.478 0.00 0.00 0.00 1.63
806 836 3.884895 TGGCGAAATCACCACAGAATAT 58.115 40.909 0.00 0.00 0.00 1.28
807 837 3.342377 TGGCGAAATCACCACAGAATA 57.658 42.857 0.00 0.00 0.00 1.75
808 838 2.198827 TGGCGAAATCACCACAGAAT 57.801 45.000 0.00 0.00 0.00 2.40
809 839 1.974265 TTGGCGAAATCACCACAGAA 58.026 45.000 0.00 0.00 35.10 3.02
810 840 2.083774 GATTGGCGAAATCACCACAGA 58.916 47.619 6.01 0.00 43.68 3.41
811 841 2.086869 AGATTGGCGAAATCACCACAG 58.913 47.619 11.91 0.00 46.21 3.66
812 842 2.083774 GAGATTGGCGAAATCACCACA 58.916 47.619 11.91 0.00 46.21 4.17
813 843 2.083774 TGAGATTGGCGAAATCACCAC 58.916 47.619 11.91 3.40 46.21 4.16
814 844 2.488204 TGAGATTGGCGAAATCACCA 57.512 45.000 11.91 7.34 46.21 4.17
815 845 3.009723 TCTTGAGATTGGCGAAATCACC 58.990 45.455 11.91 5.37 46.21 4.02
816 846 4.889832 ATCTTGAGATTGGCGAAATCAC 57.110 40.909 11.91 7.20 46.21 3.06
817 847 6.994496 AGAATATCTTGAGATTGGCGAAATCA 59.006 34.615 11.91 4.94 46.21 2.57
818 848 7.041508 ACAGAATATCTTGAGATTGGCGAAATC 60.042 37.037 0.00 3.21 44.44 2.17
819 849 6.769822 ACAGAATATCTTGAGATTGGCGAAAT 59.230 34.615 0.00 0.00 36.05 2.17
820 850 6.115446 ACAGAATATCTTGAGATTGGCGAAA 58.885 36.000 0.00 0.00 36.05 3.46
821 851 5.674525 ACAGAATATCTTGAGATTGGCGAA 58.325 37.500 0.00 0.00 36.05 4.70
822 852 5.282055 ACAGAATATCTTGAGATTGGCGA 57.718 39.130 0.00 0.00 36.05 5.54
823 853 5.277683 CCAACAGAATATCTTGAGATTGGCG 60.278 44.000 0.00 0.00 36.05 5.69
824 854 5.591877 ACCAACAGAATATCTTGAGATTGGC 59.408 40.000 0.00 0.00 36.05 4.52
825 855 6.600822 ACACCAACAGAATATCTTGAGATTGG 59.399 38.462 0.00 2.81 36.05 3.16
826 856 7.621428 ACACCAACAGAATATCTTGAGATTG 57.379 36.000 0.00 0.00 36.05 2.67
827 857 9.911788 ATTACACCAACAGAATATCTTGAGATT 57.088 29.630 0.00 0.00 36.05 2.40
828 858 9.553064 GATTACACCAACAGAATATCTTGAGAT 57.447 33.333 0.00 0.00 38.51 2.75
829 859 8.762645 AGATTACACCAACAGAATATCTTGAGA 58.237 33.333 0.00 0.00 0.00 3.27
830 860 8.954950 AGATTACACCAACAGAATATCTTGAG 57.045 34.615 0.00 0.00 0.00 3.02
831 861 7.706607 CGAGATTACACCAACAGAATATCTTGA 59.293 37.037 0.00 0.00 0.00 3.02
832 862 7.706607 TCGAGATTACACCAACAGAATATCTTG 59.293 37.037 0.00 0.00 0.00 3.02
833 863 7.782049 TCGAGATTACACCAACAGAATATCTT 58.218 34.615 0.00 0.00 0.00 2.40
834 864 7.348080 TCGAGATTACACCAACAGAATATCT 57.652 36.000 0.00 0.00 0.00 1.98
835 865 7.169982 CCTTCGAGATTACACCAACAGAATATC 59.830 40.741 0.00 0.00 0.00 1.63
836 866 6.986817 CCTTCGAGATTACACCAACAGAATAT 59.013 38.462 0.00 0.00 0.00 1.28
837 867 6.070995 ACCTTCGAGATTACACCAACAGAATA 60.071 38.462 0.00 0.00 0.00 1.75
838 868 5.178797 CCTTCGAGATTACACCAACAGAAT 58.821 41.667 0.00 0.00 0.00 2.40
839 869 4.039973 ACCTTCGAGATTACACCAACAGAA 59.960 41.667 0.00 0.00 0.00 3.02
840 870 3.576982 ACCTTCGAGATTACACCAACAGA 59.423 43.478 0.00 0.00 0.00 3.41
841 871 3.679980 CACCTTCGAGATTACACCAACAG 59.320 47.826 0.00 0.00 0.00 3.16
842 872 3.659786 CACCTTCGAGATTACACCAACA 58.340 45.455 0.00 0.00 0.00 3.33
843 873 2.415512 GCACCTTCGAGATTACACCAAC 59.584 50.000 0.00 0.00 0.00 3.77
844 874 2.301870 AGCACCTTCGAGATTACACCAA 59.698 45.455 0.00 0.00 0.00 3.67
845 875 1.899814 AGCACCTTCGAGATTACACCA 59.100 47.619 0.00 0.00 0.00 4.17
846 876 2.094182 TGAGCACCTTCGAGATTACACC 60.094 50.000 0.00 0.00 0.00 4.16
847 877 3.232213 TGAGCACCTTCGAGATTACAC 57.768 47.619 0.00 0.00 0.00 2.90
848 878 4.497507 CGTATGAGCACCTTCGAGATTACA 60.498 45.833 0.00 0.00 0.00 2.41
849 879 3.975670 CGTATGAGCACCTTCGAGATTAC 59.024 47.826 0.00 0.00 0.00 1.89
850 880 3.004419 CCGTATGAGCACCTTCGAGATTA 59.996 47.826 0.00 0.00 0.00 1.75
851 881 2.223829 CCGTATGAGCACCTTCGAGATT 60.224 50.000 0.00 0.00 0.00 2.40
852 882 1.338337 CCGTATGAGCACCTTCGAGAT 59.662 52.381 0.00 0.00 0.00 2.75
853 883 0.738975 CCGTATGAGCACCTTCGAGA 59.261 55.000 0.00 0.00 0.00 4.04
854 884 0.456221 ACCGTATGAGCACCTTCGAG 59.544 55.000 0.00 0.00 0.00 4.04
855 885 0.172578 CACCGTATGAGCACCTTCGA 59.827 55.000 0.00 0.00 0.00 3.71
856 886 0.108804 ACACCGTATGAGCACCTTCG 60.109 55.000 0.00 0.00 0.00 3.79
857 887 2.537401 GTACACCGTATGAGCACCTTC 58.463 52.381 0.00 0.00 0.00 3.46
858 888 1.135199 CGTACACCGTATGAGCACCTT 60.135 52.381 0.00 0.00 0.00 3.50
859 889 0.454600 CGTACACCGTATGAGCACCT 59.545 55.000 0.00 0.00 0.00 4.00
860 890 2.953669 CGTACACCGTATGAGCACC 58.046 57.895 0.00 0.00 0.00 5.01
870 900 2.656007 ACGCACACACGTACACCG 60.656 61.111 0.00 0.00 46.19 4.94
877 907 3.259020 ACACCGAACGCACACACG 61.259 61.111 0.00 0.00 39.50 4.49
878 908 2.168503 TCACACCGAACGCACACAC 61.169 57.895 0.00 0.00 0.00 3.82
879 909 2.168503 GTCACACCGAACGCACACA 61.169 57.895 0.00 0.00 0.00 3.72
880 910 2.624264 GTCACACCGAACGCACAC 59.376 61.111 0.00 0.00 0.00 3.82
881 911 2.586635 GGTCACACCGAACGCACA 60.587 61.111 0.00 0.00 0.00 4.57
882 912 1.897398 GATGGTCACACCGAACGCAC 61.897 60.000 0.00 0.00 42.58 5.34
883 913 1.666553 GATGGTCACACCGAACGCA 60.667 57.895 0.00 0.00 42.58 5.24
884 914 0.949105 AAGATGGTCACACCGAACGC 60.949 55.000 0.00 0.00 42.58 4.84
885 915 1.068474 GAAGATGGTCACACCGAACG 58.932 55.000 0.00 0.00 42.58 3.95
886 916 1.068474 CGAAGATGGTCACACCGAAC 58.932 55.000 0.00 0.00 42.58 3.95
887 917 0.963225 TCGAAGATGGTCACACCGAA 59.037 50.000 0.00 0.00 42.58 4.30
888 918 0.242825 GTCGAAGATGGTCACACCGA 59.757 55.000 0.00 0.00 42.58 4.69
889 919 0.243907 AGTCGAAGATGGTCACACCG 59.756 55.000 0.00 0.00 42.58 4.94
890 920 1.000955 ACAGTCGAAGATGGTCACACC 59.999 52.381 0.00 0.00 40.67 4.16
891 921 2.440539 ACAGTCGAAGATGGTCACAC 57.559 50.000 0.00 0.00 40.67 3.82
892 922 3.154710 AGTACAGTCGAAGATGGTCACA 58.845 45.455 0.00 0.00 40.67 3.58
893 923 3.851976 AGTACAGTCGAAGATGGTCAC 57.148 47.619 0.00 0.00 40.67 3.67
894 924 5.970317 TTAAGTACAGTCGAAGATGGTCA 57.030 39.130 0.00 0.00 40.67 4.02
895 925 6.618811 TCTTTAAGTACAGTCGAAGATGGTC 58.381 40.000 0.00 0.00 40.67 4.02
896 926 6.433404 TCTCTTTAAGTACAGTCGAAGATGGT 59.567 38.462 0.00 0.00 40.67 3.55
897 927 6.853720 TCTCTTTAAGTACAGTCGAAGATGG 58.146 40.000 0.00 0.00 40.67 3.51
898 928 8.744008 TTTCTCTTTAAGTACAGTCGAAGATG 57.256 34.615 0.00 0.00 40.67 2.90
906 936 8.709646 CGCAAGTTATTTCTCTTTAAGTACAGT 58.290 33.333 0.00 0.00 0.00 3.55
930 960 1.811266 ACATGTCGATGCTGGACGC 60.811 57.895 0.00 0.00 37.22 5.19
931 961 0.737367 ACACATGTCGATGCTGGACG 60.737 55.000 0.00 0.00 37.22 4.79
932 962 0.723414 CACACATGTCGATGCTGGAC 59.277 55.000 0.00 0.00 32.14 4.02
933 963 0.391528 CCACACATGTCGATGCTGGA 60.392 55.000 0.00 0.00 34.52 3.86
934 964 0.674581 ACCACACATGTCGATGCTGG 60.675 55.000 0.00 0.00 37.00 4.85
935 965 1.159285 AACCACACATGTCGATGCTG 58.841 50.000 0.00 0.00 32.14 4.41
936 966 1.896220 AAACCACACATGTCGATGCT 58.104 45.000 0.00 0.00 32.14 3.79
937 967 2.704725 AAAACCACACATGTCGATGC 57.295 45.000 0.00 0.00 32.14 3.91
957 987 3.425625 GCAATGTATCGGTGCGAGAAAAA 60.426 43.478 0.00 0.00 39.91 1.94
958 988 2.095213 GCAATGTATCGGTGCGAGAAAA 59.905 45.455 0.00 0.00 39.91 2.29
959 989 1.663643 GCAATGTATCGGTGCGAGAAA 59.336 47.619 0.00 0.00 39.91 2.52
960 990 1.134818 AGCAATGTATCGGTGCGAGAA 60.135 47.619 0.00 0.00 43.16 2.87
961 991 0.459899 AGCAATGTATCGGTGCGAGA 59.540 50.000 0.00 0.00 43.16 4.04
962 992 0.855349 GAGCAATGTATCGGTGCGAG 59.145 55.000 0.00 0.00 43.16 5.03
963 993 0.174617 TGAGCAATGTATCGGTGCGA 59.825 50.000 0.00 0.00 43.16 5.10
964 994 0.301687 GTGAGCAATGTATCGGTGCG 59.698 55.000 0.00 0.00 43.16 5.34
965 995 0.301687 CGTGAGCAATGTATCGGTGC 59.698 55.000 0.00 0.00 38.59 5.01
977 1007 3.725533 GTGTCTATCACCGCGTGAGCA 62.726 57.143 4.92 4.99 46.04 4.26
978 1008 1.140407 GTGTCTATCACCGCGTGAGC 61.140 60.000 4.92 2.66 46.04 4.26
979 1009 0.861866 CGTGTCTATCACCGCGTGAG 60.862 60.000 4.92 0.00 46.04 3.51
980 1010 1.135939 CGTGTCTATCACCGCGTGA 59.864 57.895 4.92 9.67 46.90 4.35
981 1011 0.248498 ATCGTGTCTATCACCGCGTG 60.248 55.000 4.92 3.64 43.51 5.34
982 1012 0.248498 CATCGTGTCTATCACCGCGT 60.248 55.000 4.92 0.00 43.51 6.01
983 1013 1.540607 GCATCGTGTCTATCACCGCG 61.541 60.000 0.00 0.00 43.51 6.46
984 1014 0.249073 AGCATCGTGTCTATCACCGC 60.249 55.000 0.00 0.00 43.51 5.68
985 1015 2.290916 AGTAGCATCGTGTCTATCACCG 59.709 50.000 0.00 0.00 43.51 4.94
986 1016 3.992260 AGTAGCATCGTGTCTATCACC 57.008 47.619 0.00 0.00 43.51 4.02
987 1017 5.926214 TCTAGTAGCATCGTGTCTATCAC 57.074 43.478 0.00 0.00 43.03 3.06
988 1018 6.542735 AGTTTCTAGTAGCATCGTGTCTATCA 59.457 38.462 0.00 0.00 0.00 2.15
989 1019 6.961576 AGTTTCTAGTAGCATCGTGTCTATC 58.038 40.000 0.00 0.00 0.00 2.08
990 1020 6.945938 AGTTTCTAGTAGCATCGTGTCTAT 57.054 37.500 0.00 0.00 0.00 1.98
991 1021 8.986847 GTATAGTTTCTAGTAGCATCGTGTCTA 58.013 37.037 0.00 0.00 0.00 2.59
992 1022 6.945938 ATAGTTTCTAGTAGCATCGTGTCT 57.054 37.500 0.00 0.00 0.00 3.41
1010 1040 4.157246 TCAGGTGTGTGGTCTGTATAGTT 58.843 43.478 0.00 0.00 0.00 2.24
1012 1042 3.429547 GCTCAGGTGTGTGGTCTGTATAG 60.430 52.174 0.00 0.00 0.00 1.31
1014 1044 1.276421 GCTCAGGTGTGTGGTCTGTAT 59.724 52.381 0.00 0.00 0.00 2.29
1015 1045 0.679505 GCTCAGGTGTGTGGTCTGTA 59.320 55.000 0.00 0.00 0.00 2.74
1078 1112 0.179097 GAGATCTGAAGCGGGTGGAC 60.179 60.000 0.00 0.00 0.00 4.02
1198 1232 2.261671 CGGGAAGACACGGGACTG 59.738 66.667 0.00 0.00 39.47 3.51
1613 1657 8.713708 TTGGTCCCATTTATTACAAAGAAGAA 57.286 30.769 0.00 0.00 0.00 2.52
1614 1658 8.713708 TTTGGTCCCATTTATTACAAAGAAGA 57.286 30.769 0.00 0.00 0.00 2.87
1615 1659 9.203421 GTTTTGGTCCCATTTATTACAAAGAAG 57.797 33.333 0.00 0.00 0.00 2.85
1640 1684 7.928307 ACAAATCATACTCAATTAGCACTGT 57.072 32.000 0.00 0.00 0.00 3.55
1716 1760 9.853555 TTATTAAATGCACTGAACATAAACCTG 57.146 29.630 0.00 0.00 0.00 4.00
2018 2073 6.128282 CCCAATCGGATGATTTAATTACCTCG 60.128 42.308 0.00 0.00 42.14 4.63
2036 2091 1.501741 CTCACGCAAACCCCAATCG 59.498 57.895 0.00 0.00 0.00 3.34
2134 2189 1.974236 ACAAGCAGCCTCAGTAACTCT 59.026 47.619 0.00 0.00 0.00 3.24
2150 2205 5.542251 TCCAAGGAAATTTTAAGGGGACAAG 59.458 40.000 0.00 0.00 0.00 3.16
2191 2246 1.268079 GCCAAGAAGAACTCCAGTTGC 59.732 52.381 0.00 0.00 38.56 4.17
2233 2288 3.181445 TGACAGCAGAATAGGGTGTTGTT 60.181 43.478 0.00 0.00 46.01 2.83
2253 2308 2.639347 AGGTGTCCAACATGTCATCTGA 59.361 45.455 0.00 0.00 0.00 3.27
2286 2341 8.943909 ATGAAGCACTAAGGTTAACTGTATAC 57.056 34.615 5.42 0.00 38.24 1.47
2577 2632 8.396390 CACTAGAATGAATCCAGAACATTGAAG 58.604 37.037 0.00 0.00 34.94 3.02
2827 2882 2.664402 AACATCAGGTGCCTTTCTGT 57.336 45.000 0.00 0.00 33.13 3.41
2839 2894 6.449698 ACCACTGATTAAAGCAAAACATCAG 58.550 36.000 6.02 6.02 44.36 2.90
2866 2921 7.143340 GCATGATTATATTGAAGAAGCTTGCA 58.857 34.615 2.10 0.00 38.65 4.08
2978 3037 6.893005 ACTCTAGAAGGTGTCTGCTAGTTAAT 59.107 38.462 7.94 0.00 45.50 1.40
3006 3065 6.128254 CCTTGCTAGTTCTAGTAAAGTTTGCC 60.128 42.308 10.50 0.00 0.00 4.52
3139 3198 2.422597 CCATTAACCTGTGCAACGAGA 58.577 47.619 0.00 0.00 42.39 4.04
3229 3288 6.489700 TGGAACAGTTTTGAGATGCAGATTAA 59.510 34.615 0.00 0.00 0.00 1.40
3315 3374 0.173481 TCCGCACTCTCATCTTTCCG 59.827 55.000 0.00 0.00 0.00 4.30
3358 3417 8.928448 TCTTTACTATCATCAGTTATCTTGGCT 58.072 33.333 0.00 0.00 0.00 4.75
3376 3435 3.581332 CCCTGGTGGTGTTCTCTTTACTA 59.419 47.826 0.00 0.00 0.00 1.82
3554 3613 3.123804 CTCACTGCAAAACACTACGAGT 58.876 45.455 0.00 0.00 0.00 4.18
3724 3784 5.516996 CAAGTCAAGTACGAAGACTACACA 58.483 41.667 15.11 0.00 41.45 3.72
3831 3891 0.955428 GTTCGCCAAGTCCATCAGCA 60.955 55.000 0.00 0.00 0.00 4.41
3836 3896 0.670546 CTGTCGTTCGCCAAGTCCAT 60.671 55.000 0.00 0.00 0.00 3.41
3851 3911 3.794475 GCATAAATGACATGGCAGCTGTC 60.794 47.826 12.53 12.53 42.68 3.51
3892 3952 3.109547 GACGGATGCGACGCAACA 61.110 61.111 28.24 3.15 43.62 3.33
3909 3969 2.820767 GAACGTCCGCTCACCTGGAG 62.821 65.000 0.00 0.00 46.93 3.86
3922 3982 3.061139 CGGAAATATTCTGAGCGAACGTC 60.061 47.826 0.00 0.00 38.34 4.34
3934 3994 4.562789 GCCAAAGTTTGAGCGGAAATATTC 59.437 41.667 17.33 0.00 0.00 1.75
3935 3995 4.220602 AGCCAAAGTTTGAGCGGAAATATT 59.779 37.500 17.33 0.00 33.78 1.28
4022 4154 4.005650 ACGTAACAACTCCTACTCGATCA 58.994 43.478 0.00 0.00 0.00 2.92
4055 4191 1.271597 GCCAAAGGATCGCCCAGATAT 60.272 52.381 0.00 0.00 40.26 1.63
4058 4194 0.980754 TAGCCAAAGGATCGCCCAGA 60.981 55.000 0.00 0.00 37.41 3.86
4083 4219 1.128692 GCCGTGTCAATTTCTTCCTCG 59.871 52.381 0.00 0.00 0.00 4.63
4108 4272 1.298340 CCGTGCTCCCATACAACCA 59.702 57.895 0.00 0.00 0.00 3.67
4109 4273 2.112815 GCCGTGCTCCCATACAACC 61.113 63.158 0.00 0.00 0.00 3.77
4238 4402 3.804873 TGTTTTCCTTTTATTGCAACGGC 59.195 39.130 0.00 0.00 41.68 5.68
4239 4403 5.975410 TTGTTTTCCTTTTATTGCAACGG 57.025 34.783 0.00 0.00 0.00 4.44
4240 4404 7.625553 TCAATTGTTTTCCTTTTATTGCAACG 58.374 30.769 0.00 0.00 0.00 4.10
4252 4416 9.880157 CCATTGAAGATTATCAATTGTTTTCCT 57.120 29.630 5.13 0.00 45.39 3.36
4253 4417 8.606602 GCCATTGAAGATTATCAATTGTTTTCC 58.393 33.333 5.13 0.00 45.39 3.13
4254 4418 8.606602 GGCCATTGAAGATTATCAATTGTTTTC 58.393 33.333 5.13 0.00 45.39 2.29
4259 4423 7.438564 TCATGGCCATTGAAGATTATCAATTG 58.561 34.615 17.92 0.00 45.39 2.32
4286 4455 3.247411 CGTCGGTGATGCAGCAAAATATA 59.753 43.478 6.05 0.00 0.00 0.86
4307 4476 6.944557 TGAAATTGTGAGTGATAGTGTACG 57.055 37.500 0.00 0.00 0.00 3.67
4308 4477 8.479313 TCATGAAATTGTGAGTGATAGTGTAC 57.521 34.615 0.00 0.00 0.00 2.90
4453 4809 0.406361 TGGGCCCTTAAAATGTCCGT 59.594 50.000 25.70 0.00 0.00 4.69
4456 4812 1.830477 TGCATGGGCCCTTAAAATGTC 59.170 47.619 25.70 13.66 40.13 3.06
4510 4866 2.497273 AGCAAAATATGGTCTTGGCCAC 59.503 45.455 3.88 0.00 41.94 5.01
4523 4879 2.984562 TCTCGGTGATGCAGCAAAATA 58.015 42.857 6.05 0.00 0.00 1.40
4538 4894 9.400638 GAAATTAAGAGTGATAGTGTATCTCGG 57.599 37.037 0.00 0.00 36.17 4.63
4600 4956 0.600782 CCTGTTGCAACACAATGGCC 60.601 55.000 27.96 0.00 41.27 5.36
4604 4960 4.734398 TTTTCTCCTGTTGCAACACAAT 57.266 36.364 27.96 0.00 41.27 2.71
4735 5091 3.067833 GGGCGCTATAGGAAATCAAGTC 58.932 50.000 7.64 0.00 0.00 3.01
4753 5136 2.359214 GCTCAGCCAATTTTACTAGGGC 59.641 50.000 0.00 0.00 44.92 5.19
4756 5139 6.088824 CAGTTTGCTCAGCCAATTTTACTAG 58.911 40.000 0.00 0.00 0.00 2.57
4761 5144 2.158928 TGCAGTTTGCTCAGCCAATTTT 60.159 40.909 0.00 0.00 45.31 1.82
4763 5146 1.042229 TGCAGTTTGCTCAGCCAATT 58.958 45.000 0.00 0.00 45.31 2.32
4764 5147 0.316204 GTGCAGTTTGCTCAGCCAAT 59.684 50.000 0.00 0.00 45.31 3.16
4786 5173 1.110442 CTAGCTCAGACAGGGTCCAG 58.890 60.000 0.00 0.00 32.18 3.86
4793 5180 6.514063 TCATTCATCAATCTAGCTCAGACAG 58.486 40.000 0.00 0.00 35.62 3.51
4825 5212 1.214589 GCGACGCTAGGTCAAGGAA 59.785 57.895 13.73 0.00 46.42 3.36
4826 5213 2.882876 GCGACGCTAGGTCAAGGA 59.117 61.111 13.73 0.00 46.42 3.36
4828 5215 2.579787 CCGCGACGCTAGGTCAAG 60.580 66.667 19.02 0.00 46.42 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.