Multiple sequence alignment - TraesCS7D01G160000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G160000 chr7D 100.000 1996 0 0 619 2614 110097804 110095809 0.000000e+00 3687
1 TraesCS7D01G160000 chr7D 100.000 413 0 0 1 413 110098422 110098010 0.000000e+00 763
2 TraesCS7D01G160000 chr7D 89.071 183 15 2 1846 2025 109624446 109624266 3.390000e-54 222
3 TraesCS7D01G160000 chr7A 94.434 1060 32 3 619 1657 115372480 115371427 0.000000e+00 1605
4 TraesCS7D01G160000 chr7A 93.026 717 42 2 1895 2611 115371426 115370718 0.000000e+00 1040
5 TraesCS7D01G160000 chr7A 95.455 154 7 0 1693 1846 443397782 443397629 2.010000e-61 246
6 TraesCS7D01G160000 chr7B 90.533 1088 44 11 619 1663 68850526 68849455 0.000000e+00 1384
7 TraesCS7D01G160000 chr7B 90.525 781 51 7 1844 2611 68849416 68848646 0.000000e+00 1011
8 TraesCS7D01G160000 chr7B 85.165 182 27 0 2430 2611 644144187 644144006 1.240000e-43 187
9 TraesCS7D01G160000 chr6B 79.756 410 64 10 2030 2436 70950162 70949769 1.980000e-71 279
10 TraesCS7D01G160000 chr2D 94.904 157 8 0 1690 1846 618103981 618104137 2.010000e-61 246
11 TraesCS7D01G160000 chr5B 95.425 153 7 0 1693 1845 560393861 560393709 7.230000e-61 244
12 TraesCS7D01G160000 chr4D 96.000 150 6 0 1694 1843 500456561 500456412 7.230000e-61 244
13 TraesCS7D01G160000 chr4B 95.973 149 6 0 1695 1843 429242068 429241920 2.600000e-60 243
14 TraesCS7D01G160000 chr1B 95.364 151 7 0 1693 1843 522365389 522365239 9.350000e-60 241
15 TraesCS7D01G160000 chr3D 93.671 158 10 0 1686 1843 589579384 589579541 1.210000e-58 237
16 TraesCS7D01G160000 chr5A 93.631 157 10 0 1690 1846 367790088 367790244 4.350000e-58 235
17 TraesCS7D01G160000 chr1D 94.156 154 9 0 1693 1846 286391217 286391064 4.350000e-58 235
18 TraesCS7D01G160000 chr4A 84.762 105 15 1 96 200 690570201 690570304 1.280000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G160000 chr7D 110095809 110098422 2613 True 2225.0 3687 100.000 1 2614 2 chr7D.!!$R2 2613
1 TraesCS7D01G160000 chr7A 115370718 115372480 1762 True 1322.5 1605 93.730 619 2611 2 chr7A.!!$R2 1992
2 TraesCS7D01G160000 chr7B 68848646 68850526 1880 True 1197.5 1384 90.529 619 2611 2 chr7B.!!$R2 1992

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
78 79 0.032678 ATCTACCGATTCTGCGCCTG 59.967 55.0 4.18 0.0 0.0 4.85 F
224 225 0.107752 GAAGCAGCTGAAGGGAGGAG 60.108 60.0 20.43 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1278 1303 0.097325 CGAACTCGAACTCCTCCTCG 59.903 60.0 0.0 0.0 43.02 4.63 R
1854 1898 0.178767 TCGGATTCAGTGGCTGATGG 59.821 55.0 0.0 0.0 40.39 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.623814 TCCATGAGAAAGCCGCAG 57.376 55.556 0.00 0.00 0.00 5.18
18 19 1.679311 TCCATGAGAAAGCCGCAGT 59.321 52.632 0.00 0.00 0.00 4.40
19 20 0.391661 TCCATGAGAAAGCCGCAGTC 60.392 55.000 0.00 0.00 0.00 3.51
20 21 1.699656 CCATGAGAAAGCCGCAGTCG 61.700 60.000 0.00 0.00 0.00 4.18
21 22 2.103042 ATGAGAAAGCCGCAGTCGC 61.103 57.895 0.00 0.00 0.00 5.19
22 23 3.491652 GAGAAAGCCGCAGTCGCC 61.492 66.667 0.00 0.00 33.11 5.54
41 42 3.053291 GCGGCCGGATGTGTCAAA 61.053 61.111 29.38 0.00 0.00 2.69
42 43 2.406616 GCGGCCGGATGTGTCAAAT 61.407 57.895 29.38 0.00 0.00 2.32
43 44 1.721487 CGGCCGGATGTGTCAAATC 59.279 57.895 20.10 0.00 0.00 2.17
44 45 1.714899 CGGCCGGATGTGTCAAATCC 61.715 60.000 20.10 11.67 40.30 3.01
48 49 1.721487 GGATGTGTCAAATCCGGCG 59.279 57.895 6.27 0.00 34.59 6.46
49 50 1.714899 GGATGTGTCAAATCCGGCGG 61.715 60.000 22.51 22.51 34.59 6.13
50 51 2.322999 GATGTGTCAAATCCGGCGGC 62.323 60.000 23.83 6.54 0.00 6.53
51 52 2.746277 GTGTCAAATCCGGCGGCT 60.746 61.111 23.83 9.44 0.00 5.52
52 53 2.745884 TGTCAAATCCGGCGGCTG 60.746 61.111 23.83 17.92 0.00 4.85
53 54 4.179579 GTCAAATCCGGCGGCTGC 62.180 66.667 23.83 9.72 41.71 5.25
63 64 4.221422 GCGGCTGCCACGGATCTA 62.221 66.667 20.29 0.00 33.98 1.98
64 65 2.279517 CGGCTGCCACGGATCTAC 60.280 66.667 20.29 0.00 0.00 2.59
65 66 2.109181 GGCTGCCACGGATCTACC 59.891 66.667 15.17 0.00 0.00 3.18
75 76 2.815722 GGATCTACCGATTCTGCGC 58.184 57.895 0.00 0.00 0.00 6.09
76 77 0.667792 GGATCTACCGATTCTGCGCC 60.668 60.000 4.18 0.00 0.00 6.53
77 78 0.315568 GATCTACCGATTCTGCGCCT 59.684 55.000 4.18 0.00 0.00 5.52
78 79 0.032678 ATCTACCGATTCTGCGCCTG 59.967 55.000 4.18 0.00 0.00 4.85
79 80 1.141881 CTACCGATTCTGCGCCTGT 59.858 57.895 4.18 0.00 0.00 4.00
80 81 1.148157 CTACCGATTCTGCGCCTGTG 61.148 60.000 4.18 0.00 0.00 3.66
81 82 1.600511 TACCGATTCTGCGCCTGTGA 61.601 55.000 4.18 0.00 0.00 3.58
82 83 2.456119 CCGATTCTGCGCCTGTGAC 61.456 63.158 4.18 0.00 0.00 3.67
83 84 2.792290 CGATTCTGCGCCTGTGACG 61.792 63.158 4.18 0.00 0.00 4.35
84 85 2.434884 ATTCTGCGCCTGTGACGG 60.435 61.111 4.18 0.00 0.00 4.79
85 86 3.958147 ATTCTGCGCCTGTGACGGG 62.958 63.158 5.96 5.96 0.00 5.28
102 103 1.797025 GGGACGAGAAAGTGGTCAAG 58.203 55.000 0.00 0.00 35.64 3.02
103 104 1.608283 GGGACGAGAAAGTGGTCAAGG 60.608 57.143 0.00 0.00 35.64 3.61
104 105 1.343465 GGACGAGAAAGTGGTCAAGGA 59.657 52.381 0.00 0.00 35.64 3.36
105 106 2.405172 GACGAGAAAGTGGTCAAGGAC 58.595 52.381 0.00 0.00 34.15 3.85
124 125 4.344474 GCGGCGGATCCTACGGAG 62.344 72.222 21.50 2.82 34.05 4.63
125 126 4.344474 CGGCGGATCCTACGGAGC 62.344 72.222 10.75 4.23 37.39 4.70
126 127 4.344474 GGCGGATCCTACGGAGCG 62.344 72.222 10.75 0.00 39.27 5.03
127 128 3.593794 GCGGATCCTACGGAGCGT 61.594 66.667 10.75 0.00 39.27 5.07
128 129 2.638154 CGGATCCTACGGAGCGTC 59.362 66.667 10.75 0.00 39.27 5.19
129 130 2.905807 CGGATCCTACGGAGCGTCC 61.906 68.421 10.75 6.50 39.27 4.79
154 155 4.704833 CGGGTGGTGGTCTGCTGG 62.705 72.222 0.00 0.00 0.00 4.85
155 156 4.351054 GGGTGGTGGTCTGCTGGG 62.351 72.222 0.00 0.00 0.00 4.45
156 157 4.351054 GGTGGTGGTCTGCTGGGG 62.351 72.222 0.00 0.00 0.00 4.96
157 158 3.249189 GTGGTGGTCTGCTGGGGA 61.249 66.667 0.00 0.00 0.00 4.81
158 159 2.204136 TGGTGGTCTGCTGGGGAT 60.204 61.111 0.00 0.00 0.00 3.85
159 160 2.273449 GGTGGTCTGCTGGGGATG 59.727 66.667 0.00 0.00 0.00 3.51
160 161 2.273449 GTGGTCTGCTGGGGATGG 59.727 66.667 0.00 0.00 0.00 3.51
161 162 3.016971 TGGTCTGCTGGGGATGGG 61.017 66.667 0.00 0.00 0.00 4.00
162 163 2.692368 GGTCTGCTGGGGATGGGA 60.692 66.667 0.00 0.00 0.00 4.37
163 164 2.308722 GGTCTGCTGGGGATGGGAA 61.309 63.158 0.00 0.00 0.00 3.97
164 165 1.691219 GTCTGCTGGGGATGGGAAA 59.309 57.895 0.00 0.00 0.00 3.13
165 166 0.394899 GTCTGCTGGGGATGGGAAAG 60.395 60.000 0.00 0.00 0.00 2.62
166 167 0.549902 TCTGCTGGGGATGGGAAAGA 60.550 55.000 0.00 0.00 0.00 2.52
167 168 0.554792 CTGCTGGGGATGGGAAAGAT 59.445 55.000 0.00 0.00 0.00 2.40
168 169 0.259647 TGCTGGGGATGGGAAAGATG 59.740 55.000 0.00 0.00 0.00 2.90
169 170 0.468771 GCTGGGGATGGGAAAGATGG 60.469 60.000 0.00 0.00 0.00 3.51
170 171 0.468771 CTGGGGATGGGAAAGATGGC 60.469 60.000 0.00 0.00 0.00 4.40
171 172 1.529244 GGGGATGGGAAAGATGGCG 60.529 63.158 0.00 0.00 0.00 5.69
172 173 2.196245 GGGATGGGAAAGATGGCGC 61.196 63.158 0.00 0.00 0.00 6.53
173 174 2.196245 GGATGGGAAAGATGGCGCC 61.196 63.158 22.73 22.73 0.00 6.53
174 175 2.516930 ATGGGAAAGATGGCGCCG 60.517 61.111 23.90 0.00 0.00 6.46
175 176 4.794648 TGGGAAAGATGGCGCCGG 62.795 66.667 23.90 0.00 0.00 6.13
179 180 4.460683 AAAGATGGCGCCGGCGTA 62.461 61.111 45.02 34.91 41.24 4.42
180 181 4.891727 AAGATGGCGCCGGCGTAG 62.892 66.667 45.02 22.76 41.24 3.51
182 183 4.664677 GATGGCGCCGGCGTAGAT 62.665 66.667 45.02 33.43 41.24 1.98
183 184 4.664677 ATGGCGCCGGCGTAGATC 62.665 66.667 45.02 29.83 41.24 2.75
210 211 4.263572 CGTGGGGTGGGTGAAGCA 62.264 66.667 0.00 0.00 0.00 3.91
211 212 2.282462 GTGGGGTGGGTGAAGCAG 60.282 66.667 0.00 0.00 0.00 4.24
212 213 4.284550 TGGGGTGGGTGAAGCAGC 62.285 66.667 0.00 0.00 0.00 5.25
213 214 3.971702 GGGGTGGGTGAAGCAGCT 61.972 66.667 0.00 0.00 31.98 4.24
214 215 2.674380 GGGTGGGTGAAGCAGCTG 60.674 66.667 10.11 10.11 31.98 4.24
215 216 2.431683 GGTGGGTGAAGCAGCTGA 59.568 61.111 20.43 0.00 31.98 4.26
216 217 1.228245 GGTGGGTGAAGCAGCTGAA 60.228 57.895 20.43 0.00 31.98 3.02
217 218 1.239968 GGTGGGTGAAGCAGCTGAAG 61.240 60.000 20.43 0.00 31.98 3.02
218 219 1.073722 TGGGTGAAGCAGCTGAAGG 59.926 57.895 20.43 0.00 31.98 3.46
219 220 1.676967 GGGTGAAGCAGCTGAAGGG 60.677 63.158 20.43 0.00 31.98 3.95
220 221 1.376466 GGTGAAGCAGCTGAAGGGA 59.624 57.895 20.43 0.00 0.00 4.20
221 222 0.676151 GGTGAAGCAGCTGAAGGGAG 60.676 60.000 20.43 0.00 0.00 4.30
222 223 0.676151 GTGAAGCAGCTGAAGGGAGG 60.676 60.000 20.43 0.00 0.00 4.30
223 224 0.837691 TGAAGCAGCTGAAGGGAGGA 60.838 55.000 20.43 0.00 0.00 3.71
224 225 0.107752 GAAGCAGCTGAAGGGAGGAG 60.108 60.000 20.43 0.00 0.00 3.69
225 226 0.546267 AAGCAGCTGAAGGGAGGAGA 60.546 55.000 20.43 0.00 0.00 3.71
226 227 0.326427 AGCAGCTGAAGGGAGGAGAT 60.326 55.000 20.43 0.00 0.00 2.75
227 228 0.545646 GCAGCTGAAGGGAGGAGATT 59.454 55.000 20.43 0.00 0.00 2.40
228 229 1.064832 GCAGCTGAAGGGAGGAGATTT 60.065 52.381 20.43 0.00 0.00 2.17
229 230 2.620108 GCAGCTGAAGGGAGGAGATTTT 60.620 50.000 20.43 0.00 0.00 1.82
230 231 3.694926 CAGCTGAAGGGAGGAGATTTTT 58.305 45.455 8.42 0.00 0.00 1.94
249 250 2.762535 TTTTTCTCCAGGAGGTAGCG 57.237 50.000 17.10 0.00 35.89 4.26
250 251 0.902531 TTTTCTCCAGGAGGTAGCGG 59.097 55.000 17.10 0.00 35.89 5.52
251 252 1.614241 TTTCTCCAGGAGGTAGCGGC 61.614 60.000 17.10 0.00 35.89 6.53
252 253 3.541713 CTCCAGGAGGTAGCGGCC 61.542 72.222 8.88 0.00 35.89 6.13
255 256 3.905678 CAGGAGGTAGCGGCCGAG 61.906 72.222 33.48 0.00 0.00 4.63
258 259 4.143333 GAGGTAGCGGCCGAGCAA 62.143 66.667 33.48 7.27 40.15 3.91
259 260 3.659089 GAGGTAGCGGCCGAGCAAA 62.659 63.158 33.48 5.12 40.15 3.68
260 261 2.513897 GGTAGCGGCCGAGCAAAT 60.514 61.111 33.48 9.03 40.15 2.32
261 262 1.227438 GGTAGCGGCCGAGCAAATA 60.227 57.895 33.48 7.94 40.15 1.40
262 263 0.602905 GGTAGCGGCCGAGCAAATAT 60.603 55.000 33.48 5.55 40.15 1.28
263 264 1.337447 GGTAGCGGCCGAGCAAATATA 60.337 52.381 33.48 4.51 40.15 0.86
264 265 1.993370 GTAGCGGCCGAGCAAATATAG 59.007 52.381 33.48 0.00 40.15 1.31
265 266 0.951040 AGCGGCCGAGCAAATATAGC 60.951 55.000 33.48 5.94 40.15 2.97
266 267 1.227999 GCGGCCGAGCAAATATAGCA 61.228 55.000 33.48 0.00 37.05 3.49
267 268 1.225855 CGGCCGAGCAAATATAGCAA 58.774 50.000 24.07 0.00 0.00 3.91
268 269 1.806542 CGGCCGAGCAAATATAGCAAT 59.193 47.619 24.07 0.00 0.00 3.56
269 270 2.413239 CGGCCGAGCAAATATAGCAATG 60.413 50.000 24.07 0.00 0.00 2.82
270 271 2.095059 GGCCGAGCAAATATAGCAATGG 60.095 50.000 0.00 2.99 0.00 3.16
271 272 2.554032 GCCGAGCAAATATAGCAATGGT 59.446 45.455 3.28 0.00 0.00 3.55
272 273 3.751175 GCCGAGCAAATATAGCAATGGTA 59.249 43.478 0.00 0.00 0.00 3.25
273 274 4.396166 GCCGAGCAAATATAGCAATGGTAT 59.604 41.667 9.99 9.99 0.00 2.73
274 275 5.674569 GCCGAGCAAATATAGCAATGGTATG 60.675 44.000 14.50 1.23 0.00 2.39
275 276 5.327091 CGAGCAAATATAGCAATGGTATGC 58.673 41.667 14.50 10.75 46.78 3.14
281 282 3.585990 GCAATGGTATGCGCGGCT 61.586 61.111 8.83 0.00 36.45 5.52
282 283 2.328989 CAATGGTATGCGCGGCTG 59.671 61.111 8.83 0.00 0.00 4.85
283 284 2.179547 CAATGGTATGCGCGGCTGA 61.180 57.895 8.83 0.00 0.00 4.26
284 285 1.889105 AATGGTATGCGCGGCTGAG 60.889 57.895 8.83 0.00 0.00 3.35
285 286 2.310327 AATGGTATGCGCGGCTGAGA 62.310 55.000 8.83 0.00 0.00 3.27
286 287 2.202878 GGTATGCGCGGCTGAGAA 60.203 61.111 8.83 0.00 0.00 2.87
287 288 1.595382 GGTATGCGCGGCTGAGAAT 60.595 57.895 8.83 0.00 0.00 2.40
288 289 0.319555 GGTATGCGCGGCTGAGAATA 60.320 55.000 8.83 0.00 0.00 1.75
289 290 1.497991 GTATGCGCGGCTGAGAATAA 58.502 50.000 8.83 0.00 0.00 1.40
290 291 1.864711 GTATGCGCGGCTGAGAATAAA 59.135 47.619 8.83 0.00 0.00 1.40
291 292 1.597742 ATGCGCGGCTGAGAATAAAT 58.402 45.000 8.83 0.00 0.00 1.40
292 293 1.378531 TGCGCGGCTGAGAATAAATT 58.621 45.000 8.83 0.00 0.00 1.82
293 294 2.556257 TGCGCGGCTGAGAATAAATTA 58.444 42.857 8.83 0.00 0.00 1.40
294 295 3.138304 TGCGCGGCTGAGAATAAATTAT 58.862 40.909 8.83 0.00 0.00 1.28
295 296 3.563808 TGCGCGGCTGAGAATAAATTATT 59.436 39.130 8.83 0.00 0.00 1.40
296 297 4.151798 GCGCGGCTGAGAATAAATTATTC 58.848 43.478 15.82 15.82 43.77 1.75
320 321 9.438228 TTCTACACTATAGATTAGTGAGGATCG 57.562 37.037 17.20 2.38 45.69 3.69
321 322 8.041919 TCTACACTATAGATTAGTGAGGATCGG 58.958 40.741 17.20 2.70 45.69 4.18
322 323 5.416326 ACACTATAGATTAGTGAGGATCGGC 59.584 44.000 17.20 0.00 45.69 5.54
323 324 5.650266 CACTATAGATTAGTGAGGATCGGCT 59.350 44.000 6.78 0.00 45.69 5.52
324 325 6.824196 CACTATAGATTAGTGAGGATCGGCTA 59.176 42.308 6.78 0.00 45.69 3.93
325 326 7.011950 CACTATAGATTAGTGAGGATCGGCTAG 59.988 44.444 6.78 0.00 45.69 3.42
326 327 4.374689 AGATTAGTGAGGATCGGCTAGA 57.625 45.455 0.00 0.00 38.61 2.43
327 328 4.929479 AGATTAGTGAGGATCGGCTAGAT 58.071 43.478 0.00 0.00 43.51 1.98
328 329 4.704540 AGATTAGTGAGGATCGGCTAGATG 59.295 45.833 0.00 0.00 40.26 2.90
329 330 2.666272 AGTGAGGATCGGCTAGATGA 57.334 50.000 0.00 0.00 40.26 2.92
330 331 2.235016 AGTGAGGATCGGCTAGATGAC 58.765 52.381 0.00 0.00 40.26 3.06
331 332 1.957177 GTGAGGATCGGCTAGATGACA 59.043 52.381 0.00 0.00 40.26 3.58
332 333 2.362397 GTGAGGATCGGCTAGATGACAA 59.638 50.000 0.00 0.00 40.26 3.18
333 334 3.006323 GTGAGGATCGGCTAGATGACAAT 59.994 47.826 0.00 0.00 40.26 2.71
334 335 3.006217 TGAGGATCGGCTAGATGACAATG 59.994 47.826 0.00 0.00 40.26 2.82
335 336 3.234353 AGGATCGGCTAGATGACAATGA 58.766 45.455 0.00 0.00 40.26 2.57
336 337 3.257873 AGGATCGGCTAGATGACAATGAG 59.742 47.826 0.00 0.00 40.26 2.90
337 338 3.256879 GGATCGGCTAGATGACAATGAGA 59.743 47.826 0.00 0.00 40.26 3.27
338 339 3.998099 TCGGCTAGATGACAATGAGAG 57.002 47.619 0.00 0.00 0.00 3.20
339 340 3.555966 TCGGCTAGATGACAATGAGAGA 58.444 45.455 0.00 0.00 0.00 3.10
340 341 3.954258 TCGGCTAGATGACAATGAGAGAA 59.046 43.478 0.00 0.00 0.00 2.87
341 342 4.037327 TCGGCTAGATGACAATGAGAGAAG 59.963 45.833 0.00 0.00 0.00 2.85
342 343 4.202101 CGGCTAGATGACAATGAGAGAAGT 60.202 45.833 0.00 0.00 0.00 3.01
343 344 5.009110 CGGCTAGATGACAATGAGAGAAGTA 59.991 44.000 0.00 0.00 0.00 2.24
344 345 6.460261 CGGCTAGATGACAATGAGAGAAGTAA 60.460 42.308 0.00 0.00 0.00 2.24
345 346 7.268586 GGCTAGATGACAATGAGAGAAGTAAA 58.731 38.462 0.00 0.00 0.00 2.01
346 347 7.223777 GGCTAGATGACAATGAGAGAAGTAAAC 59.776 40.741 0.00 0.00 0.00 2.01
347 348 7.223777 GCTAGATGACAATGAGAGAAGTAAACC 59.776 40.741 0.00 0.00 0.00 3.27
348 349 6.410540 AGATGACAATGAGAGAAGTAAACCC 58.589 40.000 0.00 0.00 0.00 4.11
349 350 4.566004 TGACAATGAGAGAAGTAAACCCG 58.434 43.478 0.00 0.00 0.00 5.28
350 351 4.282449 TGACAATGAGAGAAGTAAACCCGA 59.718 41.667 0.00 0.00 0.00 5.14
351 352 4.822026 ACAATGAGAGAAGTAAACCCGAG 58.178 43.478 0.00 0.00 0.00 4.63
352 353 4.283722 ACAATGAGAGAAGTAAACCCGAGT 59.716 41.667 0.00 0.00 0.00 4.18
353 354 5.221661 ACAATGAGAGAAGTAAACCCGAGTT 60.222 40.000 0.00 0.00 38.03 3.01
355 356 5.286267 TGAGAGAAGTAAACCCGAGTTTT 57.714 39.130 0.00 0.00 43.82 2.43
356 357 5.677567 TGAGAGAAGTAAACCCGAGTTTTT 58.322 37.500 0.00 0.00 43.82 1.94
357 358 6.819284 TGAGAGAAGTAAACCCGAGTTTTTA 58.181 36.000 0.00 0.00 43.82 1.52
358 359 7.447594 TGAGAGAAGTAAACCCGAGTTTTTAT 58.552 34.615 0.00 0.00 43.82 1.40
359 360 7.935210 TGAGAGAAGTAAACCCGAGTTTTTATT 59.065 33.333 0.00 0.00 43.82 1.40
360 361 8.320396 AGAGAAGTAAACCCGAGTTTTTATTC 57.680 34.615 0.00 3.59 43.82 1.75
361 362 7.389884 AGAGAAGTAAACCCGAGTTTTTATTCC 59.610 37.037 0.00 0.00 43.82 3.01
362 363 7.229308 AGAAGTAAACCCGAGTTTTTATTCCT 58.771 34.615 0.00 0.00 43.82 3.36
363 364 7.389884 AGAAGTAAACCCGAGTTTTTATTCCTC 59.610 37.037 0.00 0.00 43.82 3.71
364 365 6.776744 AGTAAACCCGAGTTTTTATTCCTCT 58.223 36.000 0.00 0.00 43.82 3.69
365 366 7.910584 AGTAAACCCGAGTTTTTATTCCTCTA 58.089 34.615 0.00 0.00 43.82 2.43
366 367 8.377799 AGTAAACCCGAGTTTTTATTCCTCTAA 58.622 33.333 0.00 0.00 43.82 2.10
367 368 9.002600 GTAAACCCGAGTTTTTATTCCTCTAAA 57.997 33.333 0.00 0.00 43.82 1.85
368 369 7.444629 AACCCGAGTTTTTATTCCTCTAAAC 57.555 36.000 0.00 0.00 29.61 2.01
369 370 6.536447 ACCCGAGTTTTTATTCCTCTAAACA 58.464 36.000 0.00 0.00 33.94 2.83
370 371 6.999871 ACCCGAGTTTTTATTCCTCTAAACAA 59.000 34.615 0.00 0.00 33.94 2.83
371 372 7.668469 ACCCGAGTTTTTATTCCTCTAAACAAT 59.332 33.333 0.00 0.00 33.94 2.71
372 373 8.182227 CCCGAGTTTTTATTCCTCTAAACAATC 58.818 37.037 0.00 0.00 33.94 2.67
373 374 8.182227 CCGAGTTTTTATTCCTCTAAACAATCC 58.818 37.037 0.00 0.00 33.94 3.01
374 375 8.947115 CGAGTTTTTATTCCTCTAAACAATCCT 58.053 33.333 0.00 0.00 33.94 3.24
378 379 8.747538 TTTTATTCCTCTAAACAATCCTAGCC 57.252 34.615 0.00 0.00 0.00 3.93
379 380 7.691993 TTATTCCTCTAAACAATCCTAGCCT 57.308 36.000 0.00 0.00 0.00 4.58
380 381 5.359194 TTCCTCTAAACAATCCTAGCCTG 57.641 43.478 0.00 0.00 0.00 4.85
381 382 3.134804 TCCTCTAAACAATCCTAGCCTGC 59.865 47.826 0.00 0.00 0.00 4.85
382 383 3.118261 CCTCTAAACAATCCTAGCCTGCA 60.118 47.826 0.00 0.00 0.00 4.41
383 384 4.125703 CTCTAAACAATCCTAGCCTGCAG 58.874 47.826 6.78 6.78 0.00 4.41
384 385 2.134789 AAACAATCCTAGCCTGCAGG 57.865 50.000 29.34 29.34 38.53 4.85
385 386 0.257039 AACAATCCTAGCCTGCAGGG 59.743 55.000 33.46 17.23 33.66 4.45
386 387 1.150081 CAATCCTAGCCTGCAGGGG 59.850 63.158 33.46 25.22 33.66 4.79
387 388 1.004758 AATCCTAGCCTGCAGGGGA 59.995 57.895 33.46 29.25 33.66 4.81
388 389 0.402566 AATCCTAGCCTGCAGGGGAT 60.403 55.000 33.46 30.03 35.95 3.85
389 390 0.839853 ATCCTAGCCTGCAGGGGATC 60.840 60.000 33.46 17.07 30.90 3.36
390 391 2.739784 CTAGCCTGCAGGGGATCG 59.260 66.667 33.46 8.00 35.18 3.69
391 392 2.844362 TAGCCTGCAGGGGATCGG 60.844 66.667 33.46 8.32 35.18 4.18
392 393 3.696518 TAGCCTGCAGGGGATCGGT 62.697 63.158 33.46 14.51 35.18 4.69
393 394 4.115199 GCCTGCAGGGGATCGGTT 62.115 66.667 33.46 0.00 35.18 4.44
394 395 2.742116 GCCTGCAGGGGATCGGTTA 61.742 63.158 33.46 0.00 35.18 2.85
395 396 1.447643 CCTGCAGGGGATCGGTTAG 59.552 63.158 26.14 0.00 0.00 2.34
396 397 1.048724 CCTGCAGGGGATCGGTTAGA 61.049 60.000 26.14 0.00 0.00 2.10
397 398 0.830648 CTGCAGGGGATCGGTTAGAA 59.169 55.000 5.57 0.00 0.00 2.10
398 399 1.209504 CTGCAGGGGATCGGTTAGAAA 59.790 52.381 5.57 0.00 0.00 2.52
399 400 1.843851 TGCAGGGGATCGGTTAGAAAT 59.156 47.619 0.00 0.00 0.00 2.17
400 401 2.222027 GCAGGGGATCGGTTAGAAATG 58.778 52.381 0.00 0.00 0.00 2.32
401 402 2.222027 CAGGGGATCGGTTAGAAATGC 58.778 52.381 0.00 0.00 0.00 3.56
402 403 1.843851 AGGGGATCGGTTAGAAATGCA 59.156 47.619 0.00 0.00 0.00 3.96
403 404 2.241176 AGGGGATCGGTTAGAAATGCAA 59.759 45.455 0.00 0.00 0.00 4.08
404 405 3.117512 AGGGGATCGGTTAGAAATGCAAT 60.118 43.478 0.00 0.00 0.00 3.56
405 406 3.004734 GGGGATCGGTTAGAAATGCAATG 59.995 47.826 0.00 0.00 0.00 2.82
406 407 3.550842 GGGATCGGTTAGAAATGCAATGC 60.551 47.826 0.00 0.00 0.00 3.56
407 408 2.823196 TCGGTTAGAAATGCAATGCG 57.177 45.000 0.00 0.00 0.00 4.73
408 409 1.191096 CGGTTAGAAATGCAATGCGC 58.809 50.000 0.00 0.00 42.89 6.09
409 410 1.559831 GGTTAGAAATGCAATGCGCC 58.440 50.000 4.18 0.00 41.33 6.53
410 411 1.559831 GTTAGAAATGCAATGCGCCC 58.440 50.000 4.18 0.00 41.33 6.13
411 412 0.459489 TTAGAAATGCAATGCGCCCC 59.541 50.000 4.18 0.00 41.33 5.80
412 413 1.391157 TAGAAATGCAATGCGCCCCC 61.391 55.000 4.18 0.00 41.33 5.40
641 642 1.615424 GCCCCTCCTCCTGTGGTTA 60.615 63.158 0.00 0.00 0.00 2.85
652 653 0.888619 CTGTGGTTAGCGTCTCCTCA 59.111 55.000 0.00 0.00 0.00 3.86
685 686 2.890847 AATCCGCCTCAGAACTCGCG 62.891 60.000 0.00 0.00 44.08 5.87
701 702 1.853319 GCGCGACCATTATTCCTCG 59.147 57.895 12.10 0.00 0.00 4.63
712 713 3.777465 TTATTCCTCGAGTGAAGACCG 57.223 47.619 12.31 0.00 0.00 4.79
719 720 0.388520 CGAGTGAAGACCGTGCATGA 60.389 55.000 7.72 0.00 0.00 3.07
740 741 1.589803 GTGAATATGGTGGCCGTACC 58.410 55.000 5.27 5.27 41.24 3.34
741 742 0.470766 TGAATATGGTGGCCGTACCC 59.529 55.000 9.69 1.86 40.09 3.69
742 743 0.601841 GAATATGGTGGCCGTACCCG 60.602 60.000 9.69 0.00 40.09 5.28
743 744 1.339644 AATATGGTGGCCGTACCCGT 61.340 55.000 9.69 5.31 40.09 5.28
744 745 0.469705 ATATGGTGGCCGTACCCGTA 60.470 55.000 9.69 7.27 40.09 4.02
745 746 1.391157 TATGGTGGCCGTACCCGTAC 61.391 60.000 9.69 0.00 40.09 3.67
770 771 1.229951 TCCATTGCCCCTCCTCTGT 60.230 57.895 0.00 0.00 0.00 3.41
786 787 0.526662 CTGTCCTCTGGTCGGTACAC 59.473 60.000 0.00 0.00 0.00 2.90
903 928 6.093495 CAGTTCAAGGCGAGTTAATAATTCCA 59.907 38.462 0.00 0.00 0.00 3.53
921 946 7.408132 AATTCCATACGAGTTACGATCATTG 57.592 36.000 0.00 0.00 45.77 2.82
952 977 3.508762 CATGTTAGCTCGTTTAGGTCGT 58.491 45.455 0.00 0.00 37.13 4.34
1054 1079 2.601367 AGCCCAACGCCAATGCTT 60.601 55.556 0.00 0.00 38.78 3.91
1132 1157 0.616111 GGAGAAGGAGGAGGAGCACA 60.616 60.000 0.00 0.00 0.00 4.57
1663 1707 0.175760 ACGGCCACATGCACTACTAG 59.824 55.000 2.24 0.00 43.89 2.57
1664 1708 0.459899 CGGCCACATGCACTACTAGA 59.540 55.000 2.24 0.00 43.89 2.43
1665 1709 1.069204 CGGCCACATGCACTACTAGAT 59.931 52.381 2.24 0.00 43.89 1.98
1666 1710 2.296190 CGGCCACATGCACTACTAGATA 59.704 50.000 2.24 0.00 43.89 1.98
1667 1711 3.654414 GGCCACATGCACTACTAGATAC 58.346 50.000 0.00 0.00 43.89 2.24
1668 1712 3.322254 GGCCACATGCACTACTAGATACT 59.678 47.826 0.00 0.00 43.89 2.12
1669 1713 4.551388 GCCACATGCACTACTAGATACTC 58.449 47.826 0.00 0.00 40.77 2.59
1670 1714 4.559704 GCCACATGCACTACTAGATACTCC 60.560 50.000 0.00 0.00 40.77 3.85
1671 1715 4.830046 CCACATGCACTACTAGATACTCCT 59.170 45.833 0.00 0.00 0.00 3.69
1672 1716 5.303078 CCACATGCACTACTAGATACTCCTT 59.697 44.000 0.00 0.00 0.00 3.36
1673 1717 6.442952 CACATGCACTACTAGATACTCCTTC 58.557 44.000 0.00 0.00 0.00 3.46
1674 1718 5.536916 ACATGCACTACTAGATACTCCTTCC 59.463 44.000 0.00 0.00 0.00 3.46
1675 1719 5.390087 TGCACTACTAGATACTCCTTCCT 57.610 43.478 0.00 0.00 0.00 3.36
1677 1721 5.104067 TGCACTACTAGATACTCCTTCCTCA 60.104 44.000 0.00 0.00 0.00 3.86
1678 1722 6.007703 GCACTACTAGATACTCCTTCCTCAT 58.992 44.000 0.00 0.00 0.00 2.90
1679 1723 6.150474 GCACTACTAGATACTCCTTCCTCATC 59.850 46.154 0.00 0.00 0.00 2.92
1681 1725 4.658063 ACTAGATACTCCTTCCTCATCGG 58.342 47.826 0.00 0.00 0.00 4.18
1682 1726 3.885976 AGATACTCCTTCCTCATCGGA 57.114 47.619 0.00 0.00 41.06 4.55
1686 1730 2.880963 CTCCTTCCTCATCGGAGTTC 57.119 55.000 0.00 0.00 44.28 3.01
1687 1731 2.103373 CTCCTTCCTCATCGGAGTTCA 58.897 52.381 0.00 0.00 44.28 3.18
1688 1732 2.497675 CTCCTTCCTCATCGGAGTTCAA 59.502 50.000 0.00 0.00 44.28 2.69
1689 1733 3.107601 TCCTTCCTCATCGGAGTTCAAT 58.892 45.455 0.00 0.00 44.28 2.57
1690 1734 3.519510 TCCTTCCTCATCGGAGTTCAATT 59.480 43.478 0.00 0.00 44.28 2.32
1692 1736 4.811557 CCTTCCTCATCGGAGTTCAATTAC 59.188 45.833 0.00 0.00 44.28 1.89
1694 1738 6.183360 CCTTCCTCATCGGAGTTCAATTACTA 60.183 42.308 0.00 0.00 44.28 1.82
1695 1739 6.785337 TCCTCATCGGAGTTCAATTACTAA 57.215 37.500 0.00 0.00 39.64 2.24
1696 1740 7.177832 TCCTCATCGGAGTTCAATTACTAAA 57.822 36.000 0.00 0.00 39.64 1.85
1697 1741 7.792032 TCCTCATCGGAGTTCAATTACTAAAT 58.208 34.615 0.00 0.00 39.64 1.40
1698 1742 8.920174 TCCTCATCGGAGTTCAATTACTAAATA 58.080 33.333 0.00 0.00 39.64 1.40
1740 1784 8.630278 TTTCAATAAGAGACTACATACGAAGC 57.370 34.615 0.00 0.00 0.00 3.86
1741 1785 7.329588 TCAATAAGAGACTACATACGAAGCA 57.670 36.000 0.00 0.00 0.00 3.91
1742 1786 7.768240 TCAATAAGAGACTACATACGAAGCAA 58.232 34.615 0.00 0.00 0.00 3.91
1743 1787 8.248253 TCAATAAGAGACTACATACGAAGCAAA 58.752 33.333 0.00 0.00 0.00 3.68
1744 1788 8.869897 CAATAAGAGACTACATACGAAGCAAAA 58.130 33.333 0.00 0.00 0.00 2.44
1745 1789 9.601217 AATAAGAGACTACATACGAAGCAAAAT 57.399 29.630 0.00 0.00 0.00 1.82
1746 1790 6.893958 AGAGACTACATACGAAGCAAAATG 57.106 37.500 0.00 0.00 0.00 2.32
1747 1791 6.631016 AGAGACTACATACGAAGCAAAATGA 58.369 36.000 0.00 0.00 0.00 2.57
1748 1792 6.754209 AGAGACTACATACGAAGCAAAATGAG 59.246 38.462 0.00 0.00 0.00 2.90
1749 1793 6.398918 AGACTACATACGAAGCAAAATGAGT 58.601 36.000 0.00 0.00 0.00 3.41
1750 1794 6.311445 AGACTACATACGAAGCAAAATGAGTG 59.689 38.462 0.00 0.00 0.00 3.51
1751 1795 6.163476 ACTACATACGAAGCAAAATGAGTGA 58.837 36.000 0.00 0.00 0.00 3.41
1752 1796 5.940192 ACATACGAAGCAAAATGAGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
1753 1797 6.500684 ACATACGAAGCAAAATGAGTGAAT 57.499 33.333 0.00 0.00 0.00 2.57
1754 1798 6.546395 ACATACGAAGCAAAATGAGTGAATC 58.454 36.000 0.00 0.00 0.00 2.52
1755 1799 6.372659 ACATACGAAGCAAAATGAGTGAATCT 59.627 34.615 0.00 0.00 0.00 2.40
1756 1800 7.549134 ACATACGAAGCAAAATGAGTGAATCTA 59.451 33.333 0.00 0.00 0.00 1.98
1757 1801 6.170675 ACGAAGCAAAATGAGTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
1758 1802 5.700832 ACGAAGCAAAATGAGTGAATCTACA 59.299 36.000 0.00 0.00 0.00 2.74
1759 1803 6.017933 CGAAGCAAAATGAGTGAATCTACAC 58.982 40.000 0.00 0.00 40.60 2.90
1798 1842 9.819267 TTATATACATTCGTATGTTGTTGTCCA 57.181 29.630 13.12 0.00 42.29 4.02
1799 1843 8.902540 ATATACATTCGTATGTTGTTGTCCAT 57.097 30.769 13.12 1.12 42.29 3.41
1800 1844 5.957842 ACATTCGTATGTTGTTGTCCATT 57.042 34.783 1.31 0.00 42.29 3.16
1801 1845 6.325919 ACATTCGTATGTTGTTGTCCATTT 57.674 33.333 1.31 0.00 42.29 2.32
1802 1846 6.148948 ACATTCGTATGTTGTTGTCCATTTG 58.851 36.000 1.31 0.00 42.29 2.32
1803 1847 6.016693 ACATTCGTATGTTGTTGTCCATTTGA 60.017 34.615 1.31 0.00 42.29 2.69
1804 1848 6.378710 TTCGTATGTTGTTGTCCATTTGAA 57.621 33.333 0.00 0.00 0.00 2.69
1805 1849 6.378710 TCGTATGTTGTTGTCCATTTGAAA 57.621 33.333 0.00 0.00 0.00 2.69
1806 1850 6.976088 TCGTATGTTGTTGTCCATTTGAAAT 58.024 32.000 0.00 0.00 0.00 2.17
1807 1851 6.860539 TCGTATGTTGTTGTCCATTTGAAATG 59.139 34.615 10.84 10.84 0.00 2.32
1808 1852 6.640499 CGTATGTTGTTGTCCATTTGAAATGT 59.360 34.615 15.93 0.00 0.00 2.71
1809 1853 7.148983 CGTATGTTGTTGTCCATTTGAAATGTC 60.149 37.037 15.93 9.53 0.00 3.06
1810 1854 6.219417 TGTTGTTGTCCATTTGAAATGTCT 57.781 33.333 15.93 0.00 0.00 3.41
1811 1855 7.340122 TGTTGTTGTCCATTTGAAATGTCTA 57.660 32.000 15.93 4.32 0.00 2.59
1812 1856 7.776107 TGTTGTTGTCCATTTGAAATGTCTAA 58.224 30.769 15.93 5.71 0.00 2.10
1813 1857 8.253810 TGTTGTTGTCCATTTGAAATGTCTAAA 58.746 29.630 15.93 3.49 0.00 1.85
1814 1858 9.092876 GTTGTTGTCCATTTGAAATGTCTAAAA 57.907 29.630 15.93 5.56 0.00 1.52
1815 1859 9.658799 TTGTTGTCCATTTGAAATGTCTAAAAA 57.341 25.926 15.93 6.88 0.00 1.94
1816 1860 9.311916 TGTTGTCCATTTGAAATGTCTAAAAAG 57.688 29.630 15.93 0.00 0.00 2.27
1817 1861 9.528018 GTTGTCCATTTGAAATGTCTAAAAAGA 57.472 29.630 15.93 1.84 0.00 2.52
1818 1862 9.528018 TTGTCCATTTGAAATGTCTAAAAAGAC 57.472 29.630 15.93 12.86 39.15 3.01
1819 1863 8.912988 TGTCCATTTGAAATGTCTAAAAAGACT 58.087 29.630 15.93 0.00 39.41 3.24
1820 1864 9.750125 GTCCATTTGAAATGTCTAAAAAGACTT 57.250 29.630 15.93 0.00 39.41 3.01
1837 1881 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
1838 1882 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
1839 1883 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
1840 1884 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
1841 1885 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
1842 1886 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
1854 1898 3.756434 CGGAGGGAGTAGAAGAGATCATC 59.244 52.174 0.00 0.00 0.00 2.92
1862 1906 4.527816 AGTAGAAGAGATCATCCATCAGCC 59.472 45.833 0.00 0.00 33.29 4.85
1874 1918 1.579698 CATCAGCCACTGAATCCGAG 58.420 55.000 0.74 0.00 44.04 4.63
1876 1920 0.532573 TCAGCCACTGAATCCGAGTC 59.467 55.000 0.00 0.00 37.57 3.36
1915 1959 6.772770 TTTGTTCGATTTTGTGAGATCGTA 57.227 33.333 5.76 0.00 44.02 3.43
1916 1960 6.389622 TTGTTCGATTTTGTGAGATCGTAG 57.610 37.500 5.76 0.00 44.02 3.51
1925 1969 0.179137 TGAGATCGTAGTGCTTGCCG 60.179 55.000 0.00 0.00 0.00 5.69
1964 2008 5.440207 TCCAATGGAGATTGTGAGATCAA 57.560 39.130 0.00 0.00 37.82 2.57
1969 2013 7.270779 CAATGGAGATTGTGAGATCAAGAGTA 58.729 38.462 0.00 0.00 35.19 2.59
1977 2021 4.281941 TGTGAGATCAAGAGTAGCAGTGTT 59.718 41.667 0.00 0.00 0.00 3.32
2032 2076 8.451908 AGGCATCTTATGATTTACTGTAAACC 57.548 34.615 14.68 6.43 0.00 3.27
2109 2153 7.548075 AGTTGTCGTTTTAGATTTCGATATGGT 59.452 33.333 0.00 0.00 34.93 3.55
2257 2302 2.479837 TGTCAGCACTTTGGTAAGACG 58.520 47.619 0.00 0.00 35.30 4.18
2268 2313 6.309737 CACTTTGGTAAGACGTGTTATAGGAC 59.690 42.308 8.54 0.00 35.30 3.85
2344 2401 2.403252 AACCTGCGTATTTGCTAGCT 57.597 45.000 17.23 0.00 35.36 3.32
2430 2487 8.492782 TGGCCATTATTTTCCATATGAATGTTT 58.507 29.630 0.00 0.00 31.67 2.83
2465 2522 0.748005 GTGTTATGGCCCGCACATCT 60.748 55.000 0.00 0.00 32.62 2.90
2471 2528 0.034574 TGGCCCGCACATCTAACAAT 60.035 50.000 0.00 0.00 0.00 2.71
2477 2534 4.165779 CCCGCACATCTAACAATGTTTTC 58.834 43.478 3.17 0.00 37.78 2.29
2499 2556 5.875224 TCATCAGGGTACACTCATCAAAAA 58.125 37.500 0.00 0.00 0.00 1.94
2537 2594 3.449018 AGCTCCATAACTCTCGACACAAT 59.551 43.478 0.00 0.00 0.00 2.71
2572 2629 4.744136 CATCATGTCTATGCATGGTGTC 57.256 45.455 10.16 2.85 46.99 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.391661 GACTGCGGCTTTCTCATGGA 60.392 55.000 0.00 0.00 0.00 3.41
1 2 1.699656 CGACTGCGGCTTTCTCATGG 61.700 60.000 0.00 0.00 0.00 3.66
2 3 1.712081 CGACTGCGGCTTTCTCATG 59.288 57.895 0.00 0.00 0.00 3.07
3 4 2.103042 GCGACTGCGGCTTTCTCAT 61.103 57.895 0.00 0.00 38.16 2.90
4 5 2.738521 GCGACTGCGGCTTTCTCA 60.739 61.111 0.00 0.00 38.16 3.27
24 25 2.322999 GATTTGACACATCCGGCCGC 62.323 60.000 22.85 4.36 0.00 6.53
25 26 1.714899 GGATTTGACACATCCGGCCG 61.715 60.000 21.04 21.04 31.00 6.13
26 27 2.106844 GGATTTGACACATCCGGCC 58.893 57.895 4.88 0.00 31.00 6.13
30 31 1.714899 CCGCCGGATTTGACACATCC 61.715 60.000 5.05 10.17 37.45 3.51
31 32 1.721487 CCGCCGGATTTGACACATC 59.279 57.895 5.05 0.00 0.00 3.06
32 33 2.406616 GCCGCCGGATTTGACACAT 61.407 57.895 7.68 0.00 0.00 3.21
33 34 3.053291 GCCGCCGGATTTGACACA 61.053 61.111 7.68 0.00 0.00 3.72
34 35 2.746277 AGCCGCCGGATTTGACAC 60.746 61.111 7.68 0.00 0.00 3.67
35 36 2.745884 CAGCCGCCGGATTTGACA 60.746 61.111 7.68 0.00 0.00 3.58
36 37 4.179579 GCAGCCGCCGGATTTGAC 62.180 66.667 7.68 0.00 0.00 3.18
46 47 4.221422 TAGATCCGTGGCAGCCGC 62.221 66.667 15.72 15.72 37.44 6.53
47 48 2.279517 GTAGATCCGTGGCAGCCG 60.280 66.667 7.03 0.00 0.00 5.52
48 49 2.109181 GGTAGATCCGTGGCAGCC 59.891 66.667 3.66 3.66 0.00 4.85
57 58 0.667792 GGCGCAGAATCGGTAGATCC 60.668 60.000 10.83 0.00 35.74 3.36
58 59 0.315568 AGGCGCAGAATCGGTAGATC 59.684 55.000 10.83 0.00 35.74 2.75
59 60 0.032678 CAGGCGCAGAATCGGTAGAT 59.967 55.000 10.83 0.00 39.12 1.98
60 61 1.320344 ACAGGCGCAGAATCGGTAGA 61.320 55.000 10.83 0.00 0.00 2.59
61 62 1.141881 ACAGGCGCAGAATCGGTAG 59.858 57.895 10.83 0.00 0.00 3.18
62 63 1.153647 CACAGGCGCAGAATCGGTA 60.154 57.895 10.83 0.00 0.00 4.02
63 64 2.434884 CACAGGCGCAGAATCGGT 60.435 61.111 10.83 0.00 0.00 4.69
64 65 2.125552 TCACAGGCGCAGAATCGG 60.126 61.111 10.83 0.00 0.00 4.18
65 66 2.792290 CGTCACAGGCGCAGAATCG 61.792 63.158 10.83 2.52 0.00 3.34
66 67 2.456119 CCGTCACAGGCGCAGAATC 61.456 63.158 10.83 0.00 0.00 2.52
67 68 2.434884 CCGTCACAGGCGCAGAAT 60.435 61.111 10.83 0.00 0.00 2.40
68 69 4.680237 CCCGTCACAGGCGCAGAA 62.680 66.667 10.83 0.00 0.00 3.02
73 74 4.778415 CTCGTCCCGTCACAGGCG 62.778 72.222 0.00 0.00 0.00 5.52
74 75 2.430382 TTTCTCGTCCCGTCACAGGC 62.430 60.000 0.00 0.00 0.00 4.85
75 76 0.388649 CTTTCTCGTCCCGTCACAGG 60.389 60.000 0.00 0.00 0.00 4.00
76 77 0.314302 ACTTTCTCGTCCCGTCACAG 59.686 55.000 0.00 0.00 0.00 3.66
77 78 0.031585 CACTTTCTCGTCCCGTCACA 59.968 55.000 0.00 0.00 0.00 3.58
78 79 0.666577 CCACTTTCTCGTCCCGTCAC 60.667 60.000 0.00 0.00 0.00 3.67
79 80 1.111116 ACCACTTTCTCGTCCCGTCA 61.111 55.000 0.00 0.00 0.00 4.35
80 81 0.388263 GACCACTTTCTCGTCCCGTC 60.388 60.000 0.00 0.00 0.00 4.79
81 82 1.111116 TGACCACTTTCTCGTCCCGT 61.111 55.000 0.00 0.00 0.00 5.28
82 83 0.032952 TTGACCACTTTCTCGTCCCG 59.967 55.000 0.00 0.00 0.00 5.14
83 84 1.608283 CCTTGACCACTTTCTCGTCCC 60.608 57.143 0.00 0.00 0.00 4.46
84 85 1.343465 TCCTTGACCACTTTCTCGTCC 59.657 52.381 0.00 0.00 0.00 4.79
85 86 2.405172 GTCCTTGACCACTTTCTCGTC 58.595 52.381 0.00 0.00 0.00 4.20
86 87 2.528041 GTCCTTGACCACTTTCTCGT 57.472 50.000 0.00 0.00 0.00 4.18
137 138 4.704833 CCAGCAGACCACCACCCG 62.705 72.222 0.00 0.00 0.00 5.28
138 139 4.351054 CCCAGCAGACCACCACCC 62.351 72.222 0.00 0.00 0.00 4.61
139 140 4.351054 CCCCAGCAGACCACCACC 62.351 72.222 0.00 0.00 0.00 4.61
140 141 2.606587 ATCCCCAGCAGACCACCAC 61.607 63.158 0.00 0.00 0.00 4.16
141 142 2.204136 ATCCCCAGCAGACCACCA 60.204 61.111 0.00 0.00 0.00 4.17
142 143 2.273449 CATCCCCAGCAGACCACC 59.727 66.667 0.00 0.00 0.00 4.61
143 144 2.273449 CCATCCCCAGCAGACCAC 59.727 66.667 0.00 0.00 0.00 4.16
144 145 3.016971 CCCATCCCCAGCAGACCA 61.017 66.667 0.00 0.00 0.00 4.02
145 146 1.863155 TTTCCCATCCCCAGCAGACC 61.863 60.000 0.00 0.00 0.00 3.85
146 147 0.394899 CTTTCCCATCCCCAGCAGAC 60.395 60.000 0.00 0.00 0.00 3.51
147 148 0.549902 TCTTTCCCATCCCCAGCAGA 60.550 55.000 0.00 0.00 0.00 4.26
148 149 0.554792 ATCTTTCCCATCCCCAGCAG 59.445 55.000 0.00 0.00 0.00 4.24
149 150 0.259647 CATCTTTCCCATCCCCAGCA 59.740 55.000 0.00 0.00 0.00 4.41
150 151 0.468771 CCATCTTTCCCATCCCCAGC 60.469 60.000 0.00 0.00 0.00 4.85
151 152 0.468771 GCCATCTTTCCCATCCCCAG 60.469 60.000 0.00 0.00 0.00 4.45
152 153 1.620259 GCCATCTTTCCCATCCCCA 59.380 57.895 0.00 0.00 0.00 4.96
153 154 1.529244 CGCCATCTTTCCCATCCCC 60.529 63.158 0.00 0.00 0.00 4.81
154 155 2.196245 GCGCCATCTTTCCCATCCC 61.196 63.158 0.00 0.00 0.00 3.85
155 156 2.196245 GGCGCCATCTTTCCCATCC 61.196 63.158 24.80 0.00 0.00 3.51
156 157 2.546494 CGGCGCCATCTTTCCCATC 61.546 63.158 28.98 0.00 0.00 3.51
157 158 2.516930 CGGCGCCATCTTTCCCAT 60.517 61.111 28.98 0.00 0.00 4.00
158 159 4.794648 CCGGCGCCATCTTTCCCA 62.795 66.667 28.98 0.00 0.00 4.37
162 163 4.460683 TACGCCGGCGCCATCTTT 62.461 61.111 46.22 28.38 44.19 2.52
163 164 4.891727 CTACGCCGGCGCCATCTT 62.892 66.667 46.22 29.15 44.19 2.40
165 166 4.664677 ATCTACGCCGGCGCCATC 62.665 66.667 46.22 16.17 44.19 3.51
166 167 4.664677 GATCTACGCCGGCGCCAT 62.665 66.667 46.22 33.88 44.19 4.40
193 194 4.263572 TGCTTCACCCACCCCACG 62.264 66.667 0.00 0.00 0.00 4.94
194 195 2.282462 CTGCTTCACCCACCCCAC 60.282 66.667 0.00 0.00 0.00 4.61
195 196 4.284550 GCTGCTTCACCCACCCCA 62.285 66.667 0.00 0.00 0.00 4.96
196 197 3.971702 AGCTGCTTCACCCACCCC 61.972 66.667 0.00 0.00 0.00 4.95
197 198 2.674380 CAGCTGCTTCACCCACCC 60.674 66.667 0.00 0.00 0.00 4.61
198 199 1.228245 TTCAGCTGCTTCACCCACC 60.228 57.895 9.47 0.00 0.00 4.61
199 200 1.239968 CCTTCAGCTGCTTCACCCAC 61.240 60.000 9.47 0.00 0.00 4.61
200 201 1.073722 CCTTCAGCTGCTTCACCCA 59.926 57.895 9.47 0.00 0.00 4.51
201 202 1.676967 CCCTTCAGCTGCTTCACCC 60.677 63.158 9.47 0.00 0.00 4.61
202 203 0.676151 CTCCCTTCAGCTGCTTCACC 60.676 60.000 9.47 0.00 0.00 4.02
203 204 0.676151 CCTCCCTTCAGCTGCTTCAC 60.676 60.000 9.47 0.00 0.00 3.18
204 205 0.837691 TCCTCCCTTCAGCTGCTTCA 60.838 55.000 9.47 0.00 0.00 3.02
205 206 0.107752 CTCCTCCCTTCAGCTGCTTC 60.108 60.000 9.47 0.00 0.00 3.86
206 207 0.546267 TCTCCTCCCTTCAGCTGCTT 60.546 55.000 9.47 0.00 0.00 3.91
207 208 0.326427 ATCTCCTCCCTTCAGCTGCT 60.326 55.000 9.47 0.00 0.00 4.24
208 209 0.545646 AATCTCCTCCCTTCAGCTGC 59.454 55.000 9.47 0.00 0.00 5.25
209 210 3.362870 AAAATCTCCTCCCTTCAGCTG 57.637 47.619 7.63 7.63 0.00 4.24
230 231 1.278127 CCGCTACCTCCTGGAGAAAAA 59.722 52.381 25.18 6.23 37.04 1.94
231 232 0.902531 CCGCTACCTCCTGGAGAAAA 59.097 55.000 25.18 8.64 37.04 2.29
232 233 1.614241 GCCGCTACCTCCTGGAGAAA 61.614 60.000 25.18 11.09 37.04 2.52
233 234 2.058595 GCCGCTACCTCCTGGAGAA 61.059 63.158 25.18 11.44 37.04 2.87
234 235 2.442272 GCCGCTACCTCCTGGAGA 60.442 66.667 25.18 5.07 37.04 3.71
235 236 3.541713 GGCCGCTACCTCCTGGAG 61.542 72.222 17.02 17.02 37.04 3.86
238 239 3.905678 CTCGGCCGCTACCTCCTG 61.906 72.222 23.51 0.00 0.00 3.86
241 242 2.925162 ATTTGCTCGGCCGCTACCTC 62.925 60.000 23.51 5.73 0.00 3.85
242 243 1.682451 TATTTGCTCGGCCGCTACCT 61.682 55.000 23.51 5.70 0.00 3.08
243 244 0.602905 ATATTTGCTCGGCCGCTACC 60.603 55.000 23.51 8.78 0.00 3.18
244 245 1.993370 CTATATTTGCTCGGCCGCTAC 59.007 52.381 23.51 12.86 0.00 3.58
245 246 1.671850 GCTATATTTGCTCGGCCGCTA 60.672 52.381 23.51 2.44 0.00 4.26
246 247 0.951040 GCTATATTTGCTCGGCCGCT 60.951 55.000 23.51 2.75 0.00 5.52
247 248 1.227999 TGCTATATTTGCTCGGCCGC 61.228 55.000 23.51 8.23 0.00 6.53
248 249 1.225855 TTGCTATATTTGCTCGGCCG 58.774 50.000 22.12 22.12 0.00 6.13
249 250 2.095059 CCATTGCTATATTTGCTCGGCC 60.095 50.000 0.00 0.00 0.00 6.13
250 251 2.554032 ACCATTGCTATATTTGCTCGGC 59.446 45.455 2.81 0.00 0.00 5.54
251 252 5.674569 GCATACCATTGCTATATTTGCTCGG 60.675 44.000 2.81 0.00 39.57 4.63
252 253 5.327091 GCATACCATTGCTATATTTGCTCG 58.673 41.667 2.81 0.00 39.57 5.03
253 254 5.327091 CGCATACCATTGCTATATTTGCTC 58.673 41.667 0.00 0.00 40.54 4.26
254 255 4.379813 GCGCATACCATTGCTATATTTGCT 60.380 41.667 0.30 0.00 40.54 3.91
255 256 3.853671 GCGCATACCATTGCTATATTTGC 59.146 43.478 0.30 0.00 40.54 3.68
256 257 4.090729 CGCGCATACCATTGCTATATTTG 58.909 43.478 8.75 0.00 40.54 2.32
257 258 3.126858 CCGCGCATACCATTGCTATATTT 59.873 43.478 8.75 0.00 40.54 1.40
258 259 2.677836 CCGCGCATACCATTGCTATATT 59.322 45.455 8.75 0.00 40.54 1.28
259 260 2.279741 CCGCGCATACCATTGCTATAT 58.720 47.619 8.75 0.00 40.54 0.86
260 261 1.720805 CCGCGCATACCATTGCTATA 58.279 50.000 8.75 0.00 40.54 1.31
261 262 1.577328 GCCGCGCATACCATTGCTAT 61.577 55.000 8.75 0.00 40.54 2.97
262 263 2.250939 GCCGCGCATACCATTGCTA 61.251 57.895 8.75 0.00 40.54 3.49
263 264 3.585990 GCCGCGCATACCATTGCT 61.586 61.111 8.75 0.00 40.54 3.91
264 265 3.585990 AGCCGCGCATACCATTGC 61.586 61.111 8.75 0.00 39.29 3.56
265 266 2.109538 CTCAGCCGCGCATACCATTG 62.110 60.000 8.75 0.00 0.00 2.82
266 267 1.889105 CTCAGCCGCGCATACCATT 60.889 57.895 8.75 0.00 0.00 3.16
267 268 2.280389 CTCAGCCGCGCATACCAT 60.280 61.111 8.75 0.00 0.00 3.55
268 269 2.310327 ATTCTCAGCCGCGCATACCA 62.310 55.000 8.75 0.00 0.00 3.25
269 270 0.319555 TATTCTCAGCCGCGCATACC 60.320 55.000 8.75 0.00 0.00 2.73
270 271 1.497991 TTATTCTCAGCCGCGCATAC 58.502 50.000 8.75 0.00 0.00 2.39
271 272 2.232756 TTTATTCTCAGCCGCGCATA 57.767 45.000 8.75 0.00 0.00 3.14
272 273 1.597742 ATTTATTCTCAGCCGCGCAT 58.402 45.000 8.75 0.00 0.00 4.73
273 274 1.378531 AATTTATTCTCAGCCGCGCA 58.621 45.000 8.75 0.00 0.00 6.09
274 275 3.813529 ATAATTTATTCTCAGCCGCGC 57.186 42.857 0.00 0.00 0.00 6.86
294 295 9.438228 CGATCCTCACTAATCTATAGTGTAGAA 57.562 37.037 13.56 0.00 43.84 2.10
295 296 8.041919 CCGATCCTCACTAATCTATAGTGTAGA 58.958 40.741 13.56 11.83 43.84 2.59
296 297 7.201661 GCCGATCCTCACTAATCTATAGTGTAG 60.202 44.444 13.56 5.46 43.84 2.74
297 298 6.598457 GCCGATCCTCACTAATCTATAGTGTA 59.402 42.308 13.56 3.97 43.84 2.90
298 299 5.416326 GCCGATCCTCACTAATCTATAGTGT 59.584 44.000 13.56 0.00 43.84 3.55
299 300 5.650266 AGCCGATCCTCACTAATCTATAGTG 59.350 44.000 8.89 8.89 44.56 2.74
300 301 5.822204 AGCCGATCCTCACTAATCTATAGT 58.178 41.667 0.00 0.00 0.00 2.12
301 302 7.276658 TCTAGCCGATCCTCACTAATCTATAG 58.723 42.308 0.00 0.00 0.00 1.31
302 303 7.196637 TCTAGCCGATCCTCACTAATCTATA 57.803 40.000 0.00 0.00 0.00 1.31
303 304 6.068461 TCTAGCCGATCCTCACTAATCTAT 57.932 41.667 0.00 0.00 0.00 1.98
304 305 5.500546 TCTAGCCGATCCTCACTAATCTA 57.499 43.478 0.00 0.00 0.00 1.98
305 306 4.374689 TCTAGCCGATCCTCACTAATCT 57.625 45.455 0.00 0.00 0.00 2.40
306 307 4.702612 TCATCTAGCCGATCCTCACTAATC 59.297 45.833 0.00 0.00 0.00 1.75
307 308 4.461081 GTCATCTAGCCGATCCTCACTAAT 59.539 45.833 0.00 0.00 0.00 1.73
308 309 3.821600 GTCATCTAGCCGATCCTCACTAA 59.178 47.826 0.00 0.00 0.00 2.24
309 310 3.181443 TGTCATCTAGCCGATCCTCACTA 60.181 47.826 0.00 0.00 0.00 2.74
310 311 2.235016 GTCATCTAGCCGATCCTCACT 58.765 52.381 0.00 0.00 0.00 3.41
311 312 1.957177 TGTCATCTAGCCGATCCTCAC 59.043 52.381 0.00 0.00 0.00 3.51
312 313 2.364972 TGTCATCTAGCCGATCCTCA 57.635 50.000 0.00 0.00 0.00 3.86
313 314 3.256879 TCATTGTCATCTAGCCGATCCTC 59.743 47.826 0.00 0.00 0.00 3.71
314 315 3.234353 TCATTGTCATCTAGCCGATCCT 58.766 45.455 0.00 0.00 0.00 3.24
315 316 3.256879 TCTCATTGTCATCTAGCCGATCC 59.743 47.826 0.00 0.00 0.00 3.36
316 317 4.217334 TCTCTCATTGTCATCTAGCCGATC 59.783 45.833 0.00 0.00 0.00 3.69
317 318 4.148079 TCTCTCATTGTCATCTAGCCGAT 58.852 43.478 0.00 0.00 0.00 4.18
318 319 3.555966 TCTCTCATTGTCATCTAGCCGA 58.444 45.455 0.00 0.00 0.00 5.54
319 320 3.998099 TCTCTCATTGTCATCTAGCCG 57.002 47.619 0.00 0.00 0.00 5.52
320 321 5.275067 ACTTCTCTCATTGTCATCTAGCC 57.725 43.478 0.00 0.00 0.00 3.93
321 322 7.223777 GGTTTACTTCTCTCATTGTCATCTAGC 59.776 40.741 0.00 0.00 0.00 3.42
322 323 7.708752 GGGTTTACTTCTCTCATTGTCATCTAG 59.291 40.741 0.00 0.00 0.00 2.43
323 324 7.556844 GGGTTTACTTCTCTCATTGTCATCTA 58.443 38.462 0.00 0.00 0.00 1.98
324 325 6.410540 GGGTTTACTTCTCTCATTGTCATCT 58.589 40.000 0.00 0.00 0.00 2.90
325 326 5.292101 CGGGTTTACTTCTCTCATTGTCATC 59.708 44.000 0.00 0.00 0.00 2.92
326 327 5.046591 TCGGGTTTACTTCTCTCATTGTCAT 60.047 40.000 0.00 0.00 0.00 3.06
327 328 4.282449 TCGGGTTTACTTCTCTCATTGTCA 59.718 41.667 0.00 0.00 0.00 3.58
328 329 4.817517 TCGGGTTTACTTCTCTCATTGTC 58.182 43.478 0.00 0.00 0.00 3.18
329 330 4.283722 ACTCGGGTTTACTTCTCTCATTGT 59.716 41.667 0.00 0.00 0.00 2.71
330 331 4.822026 ACTCGGGTTTACTTCTCTCATTG 58.178 43.478 0.00 0.00 0.00 2.82
331 332 5.485209 AACTCGGGTTTACTTCTCTCATT 57.515 39.130 0.00 0.00 30.55 2.57
332 333 5.485209 AAACTCGGGTTTACTTCTCTCAT 57.515 39.130 12.78 0.00 43.00 2.90
333 334 4.950205 AAACTCGGGTTTACTTCTCTCA 57.050 40.909 12.78 0.00 43.00 3.27
334 335 7.902387 ATAAAAACTCGGGTTTACTTCTCTC 57.098 36.000 15.03 0.00 43.90 3.20
335 336 7.389884 GGAATAAAAACTCGGGTTTACTTCTCT 59.610 37.037 15.03 0.00 43.90 3.10
336 337 7.389884 AGGAATAAAAACTCGGGTTTACTTCTC 59.610 37.037 15.03 7.50 43.90 2.87
337 338 7.229308 AGGAATAAAAACTCGGGTTTACTTCT 58.771 34.615 15.03 4.88 43.90 2.85
338 339 7.389884 AGAGGAATAAAAACTCGGGTTTACTTC 59.610 37.037 15.03 15.69 43.90 3.01
339 340 7.229308 AGAGGAATAAAAACTCGGGTTTACTT 58.771 34.615 15.03 8.46 43.90 2.24
340 341 6.776744 AGAGGAATAAAAACTCGGGTTTACT 58.223 36.000 15.03 7.24 43.90 2.24
341 342 8.552083 TTAGAGGAATAAAAACTCGGGTTTAC 57.448 34.615 15.03 3.92 43.90 2.01
342 343 9.002600 GTTTAGAGGAATAAAAACTCGGGTTTA 57.997 33.333 15.03 0.00 43.90 2.01
343 344 7.503230 TGTTTAGAGGAATAAAAACTCGGGTTT 59.497 33.333 7.82 7.82 46.27 3.27
344 345 6.999871 TGTTTAGAGGAATAAAAACTCGGGTT 59.000 34.615 0.00 0.00 36.40 4.11
345 346 6.536447 TGTTTAGAGGAATAAAAACTCGGGT 58.464 36.000 0.00 0.00 36.40 5.28
346 347 7.443259 TTGTTTAGAGGAATAAAAACTCGGG 57.557 36.000 0.00 0.00 36.40 5.14
347 348 8.182227 GGATTGTTTAGAGGAATAAAAACTCGG 58.818 37.037 0.00 0.00 36.40 4.63
348 349 8.947115 AGGATTGTTTAGAGGAATAAAAACTCG 58.053 33.333 0.00 0.00 36.40 4.18
352 353 9.185680 GGCTAGGATTGTTTAGAGGAATAAAAA 57.814 33.333 0.00 0.00 0.00 1.94
353 354 8.557450 AGGCTAGGATTGTTTAGAGGAATAAAA 58.443 33.333 0.00 0.00 0.00 1.52
354 355 7.993183 CAGGCTAGGATTGTTTAGAGGAATAAA 59.007 37.037 0.00 0.00 0.00 1.40
355 356 7.509546 CAGGCTAGGATTGTTTAGAGGAATAA 58.490 38.462 0.00 0.00 0.00 1.40
356 357 6.464465 GCAGGCTAGGATTGTTTAGAGGAATA 60.464 42.308 0.00 0.00 0.00 1.75
357 358 5.688766 GCAGGCTAGGATTGTTTAGAGGAAT 60.689 44.000 0.00 0.00 0.00 3.01
358 359 4.384208 GCAGGCTAGGATTGTTTAGAGGAA 60.384 45.833 0.00 0.00 0.00 3.36
359 360 3.134804 GCAGGCTAGGATTGTTTAGAGGA 59.865 47.826 0.00 0.00 0.00 3.71
360 361 3.118261 TGCAGGCTAGGATTGTTTAGAGG 60.118 47.826 0.00 0.00 0.00 3.69
361 362 4.125703 CTGCAGGCTAGGATTGTTTAGAG 58.874 47.826 5.57 0.00 0.00 2.43
362 363 3.118261 CCTGCAGGCTAGGATTGTTTAGA 60.118 47.826 22.33 0.00 37.52 2.10
363 364 3.209410 CCTGCAGGCTAGGATTGTTTAG 58.791 50.000 22.33 0.00 37.52 1.85
364 365 2.092429 CCCTGCAGGCTAGGATTGTTTA 60.092 50.000 28.39 0.00 37.52 2.01
365 366 1.341383 CCCTGCAGGCTAGGATTGTTT 60.341 52.381 28.39 0.00 37.52 2.83
366 367 0.257039 CCCTGCAGGCTAGGATTGTT 59.743 55.000 28.39 0.00 37.52 2.83
367 368 1.639635 CCCCTGCAGGCTAGGATTGT 61.640 60.000 28.39 0.00 37.52 2.71
368 369 1.150081 CCCCTGCAGGCTAGGATTG 59.850 63.158 28.39 10.80 37.52 2.67
369 370 0.402566 ATCCCCTGCAGGCTAGGATT 60.403 55.000 27.48 16.33 37.52 3.01
370 371 0.839853 GATCCCCTGCAGGCTAGGAT 60.840 60.000 31.15 31.15 36.76 3.24
371 372 1.460305 GATCCCCTGCAGGCTAGGA 60.460 63.158 28.39 26.92 37.52 2.94
372 373 2.876945 CGATCCCCTGCAGGCTAGG 61.877 68.421 28.39 22.57 35.01 3.02
373 374 2.739784 CGATCCCCTGCAGGCTAG 59.260 66.667 28.39 17.52 0.00 3.42
374 375 2.844362 CCGATCCCCTGCAGGCTA 60.844 66.667 28.39 17.27 0.00 3.93
376 377 2.666596 CTAACCGATCCCCTGCAGGC 62.667 65.000 28.39 12.69 0.00 4.85
377 378 1.048724 TCTAACCGATCCCCTGCAGG 61.049 60.000 26.87 26.87 0.00 4.85
378 379 0.830648 TTCTAACCGATCCCCTGCAG 59.169 55.000 6.78 6.78 0.00 4.41
379 380 1.281419 TTTCTAACCGATCCCCTGCA 58.719 50.000 0.00 0.00 0.00 4.41
380 381 2.222027 CATTTCTAACCGATCCCCTGC 58.778 52.381 0.00 0.00 0.00 4.85
381 382 2.222027 GCATTTCTAACCGATCCCCTG 58.778 52.381 0.00 0.00 0.00 4.45
382 383 1.843851 TGCATTTCTAACCGATCCCCT 59.156 47.619 0.00 0.00 0.00 4.79
383 384 2.341846 TGCATTTCTAACCGATCCCC 57.658 50.000 0.00 0.00 0.00 4.81
384 385 3.550842 GCATTGCATTTCTAACCGATCCC 60.551 47.826 3.15 0.00 0.00 3.85
385 386 3.632189 GCATTGCATTTCTAACCGATCC 58.368 45.455 3.15 0.00 0.00 3.36
386 387 3.291585 CGCATTGCATTTCTAACCGATC 58.708 45.455 9.69 0.00 0.00 3.69
387 388 2.541588 GCGCATTGCATTTCTAACCGAT 60.542 45.455 9.69 0.00 45.45 4.18
388 389 1.202132 GCGCATTGCATTTCTAACCGA 60.202 47.619 9.69 0.00 45.45 4.69
389 390 1.191096 GCGCATTGCATTTCTAACCG 58.809 50.000 9.69 0.00 45.45 4.44
630 631 0.173708 GGAGACGCTAACCACAGGAG 59.826 60.000 0.00 0.00 0.00 3.69
631 632 0.251653 AGGAGACGCTAACCACAGGA 60.252 55.000 0.00 0.00 0.00 3.86
634 635 0.601558 GTGAGGAGACGCTAACCACA 59.398 55.000 0.00 0.00 0.00 4.17
641 642 2.653702 GTGCTGTGAGGAGACGCT 59.346 61.111 0.00 0.00 0.00 5.07
652 653 1.901085 GGATTCCTCTCCGTGCTGT 59.099 57.895 0.00 0.00 0.00 4.40
675 676 0.800683 TAATGGTCGCGCGAGTTCTG 60.801 55.000 35.75 0.00 0.00 3.02
685 686 2.128035 CACTCGAGGAATAATGGTCGC 58.872 52.381 18.41 0.00 32.41 5.19
701 702 1.071605 GTCATGCACGGTCTTCACTC 58.928 55.000 0.00 0.00 0.00 3.51
712 713 2.032054 CCACCATATTCACGTCATGCAC 59.968 50.000 0.00 0.00 0.00 4.57
719 720 0.825410 TACGGCCACCATATTCACGT 59.175 50.000 2.24 0.00 36.93 4.49
740 741 1.670811 GGCAATGGAGTTCATGTACGG 59.329 52.381 0.00 0.00 35.99 4.02
741 742 1.670811 GGGCAATGGAGTTCATGTACG 59.329 52.381 0.00 0.00 35.99 3.67
742 743 2.024414 GGGGCAATGGAGTTCATGTAC 58.976 52.381 0.00 0.00 35.99 2.90
743 744 1.922447 AGGGGCAATGGAGTTCATGTA 59.078 47.619 0.00 0.00 35.99 2.29
744 745 0.706433 AGGGGCAATGGAGTTCATGT 59.294 50.000 0.00 0.00 35.99 3.21
745 746 1.396653 GAGGGGCAATGGAGTTCATG 58.603 55.000 0.00 0.00 35.99 3.07
770 771 1.304713 GGGTGTACCGACCAGAGGA 60.305 63.158 4.87 0.00 37.80 3.71
786 787 0.609957 TGCTCATCAACTGGCAAGGG 60.610 55.000 0.00 0.00 30.99 3.95
903 928 5.898174 TGGTTCAATGATCGTAACTCGTAT 58.102 37.500 1.59 0.00 40.80 3.06
921 946 3.126831 CGAGCTAACATGGATCTGGTTC 58.873 50.000 0.00 0.00 0.00 3.62
952 977 3.840594 CCACGATTACGGCCGGGA 61.841 66.667 31.76 18.11 44.46 5.14
1054 1079 3.785486 CAGCATCCTCGTTCTGTTGATA 58.215 45.455 0.00 0.00 0.00 2.15
1278 1303 0.097325 CGAACTCGAACTCCTCCTCG 59.903 60.000 0.00 0.00 43.02 4.63
1673 1717 9.712305 ATATTTAGTAATTGAACTCCGATGAGG 57.288 33.333 0.00 0.00 43.29 3.86
1714 1758 9.250624 GCTTCGTATGTAGTCTCTTATTGAAAT 57.749 33.333 0.00 0.00 0.00 2.17
1715 1759 8.248253 TGCTTCGTATGTAGTCTCTTATTGAAA 58.752 33.333 0.00 0.00 0.00 2.69
1716 1760 7.768240 TGCTTCGTATGTAGTCTCTTATTGAA 58.232 34.615 0.00 0.00 0.00 2.69
1717 1761 7.329588 TGCTTCGTATGTAGTCTCTTATTGA 57.670 36.000 0.00 0.00 0.00 2.57
1718 1762 7.987268 TTGCTTCGTATGTAGTCTCTTATTG 57.013 36.000 0.00 0.00 0.00 1.90
1719 1763 8.997621 TTTTGCTTCGTATGTAGTCTCTTATT 57.002 30.769 0.00 0.00 0.00 1.40
1720 1764 9.035607 CATTTTGCTTCGTATGTAGTCTCTTAT 57.964 33.333 0.00 0.00 0.00 1.73
1721 1765 8.248253 TCATTTTGCTTCGTATGTAGTCTCTTA 58.752 33.333 0.00 0.00 0.00 2.10
1722 1766 7.097192 TCATTTTGCTTCGTATGTAGTCTCTT 58.903 34.615 0.00 0.00 0.00 2.85
1723 1767 6.631016 TCATTTTGCTTCGTATGTAGTCTCT 58.369 36.000 0.00 0.00 0.00 3.10
1724 1768 6.531948 ACTCATTTTGCTTCGTATGTAGTCTC 59.468 38.462 0.00 0.00 0.00 3.36
1725 1769 6.311445 CACTCATTTTGCTTCGTATGTAGTCT 59.689 38.462 0.00 0.00 0.00 3.24
1726 1770 6.310467 TCACTCATTTTGCTTCGTATGTAGTC 59.690 38.462 0.00 0.00 0.00 2.59
1727 1771 6.163476 TCACTCATTTTGCTTCGTATGTAGT 58.837 36.000 0.00 0.00 0.00 2.73
1728 1772 6.647212 TCACTCATTTTGCTTCGTATGTAG 57.353 37.500 0.00 0.00 0.00 2.74
1729 1773 7.549134 AGATTCACTCATTTTGCTTCGTATGTA 59.451 33.333 0.00 0.00 0.00 2.29
1730 1774 5.940192 TTCACTCATTTTGCTTCGTATGT 57.060 34.783 0.00 0.00 0.00 2.29
1731 1775 6.779117 AGATTCACTCATTTTGCTTCGTATG 58.221 36.000 0.00 0.00 0.00 2.39
1732 1776 6.992063 AGATTCACTCATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
1733 1777 6.871492 TGTAGATTCACTCATTTTGCTTCGTA 59.129 34.615 0.00 0.00 0.00 3.43
1734 1778 5.700832 TGTAGATTCACTCATTTTGCTTCGT 59.299 36.000 0.00 0.00 0.00 3.85
1735 1779 6.017933 GTGTAGATTCACTCATTTTGCTTCG 58.982 40.000 0.00 0.00 35.68 3.79
1736 1780 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
1772 1816 9.819267 TGGACAACAACATACGAATGTATATAA 57.181 29.630 0.00 0.00 45.79 0.98
1773 1817 9.990360 ATGGACAACAACATACGAATGTATATA 57.010 29.630 0.00 0.00 45.79 0.86
1774 1818 8.902540 ATGGACAACAACATACGAATGTATAT 57.097 30.769 0.00 0.00 45.79 0.86
1775 1819 8.725405 AATGGACAACAACATACGAATGTATA 57.275 30.769 0.00 0.00 45.79 1.47
1776 1820 7.624360 AATGGACAACAACATACGAATGTAT 57.376 32.000 0.00 0.00 45.79 2.29
1777 1821 7.173390 TCAAATGGACAACAACATACGAATGTA 59.827 33.333 0.00 0.00 45.79 2.29
1779 1823 6.377780 TCAAATGGACAACAACATACGAATG 58.622 36.000 0.00 0.00 39.17 2.67
1780 1824 6.567687 TCAAATGGACAACAACATACGAAT 57.432 33.333 0.00 0.00 0.00 3.34
1781 1825 6.378710 TTCAAATGGACAACAACATACGAA 57.621 33.333 0.00 0.00 0.00 3.85
1782 1826 6.378710 TTTCAAATGGACAACAACATACGA 57.621 33.333 0.00 0.00 0.00 3.43
1783 1827 6.640499 ACATTTCAAATGGACAACAACATACG 59.360 34.615 14.70 0.00 0.00 3.06
1784 1828 7.867403 AGACATTTCAAATGGACAACAACATAC 59.133 33.333 14.70 0.00 0.00 2.39
1785 1829 7.950512 AGACATTTCAAATGGACAACAACATA 58.049 30.769 14.70 0.00 0.00 2.29
1786 1830 6.819284 AGACATTTCAAATGGACAACAACAT 58.181 32.000 14.70 0.00 0.00 2.71
1787 1831 6.219417 AGACATTTCAAATGGACAACAACA 57.781 33.333 14.70 0.00 0.00 3.33
1788 1832 8.641499 TTTAGACATTTCAAATGGACAACAAC 57.359 30.769 14.70 0.00 0.00 3.32
1789 1833 9.658799 TTTTTAGACATTTCAAATGGACAACAA 57.341 25.926 14.70 2.19 0.00 2.83
1790 1834 9.311916 CTTTTTAGACATTTCAAATGGACAACA 57.688 29.630 14.70 0.00 0.00 3.33
1791 1835 9.528018 TCTTTTTAGACATTTCAAATGGACAAC 57.472 29.630 14.70 1.26 0.00 3.32
1792 1836 9.528018 GTCTTTTTAGACATTTCAAATGGACAA 57.472 29.630 14.70 2.31 38.59 3.18
1793 1837 8.912988 AGTCTTTTTAGACATTTCAAATGGACA 58.087 29.630 14.70 0.00 41.02 4.02
1794 1838 9.750125 AAGTCTTTTTAGACATTTCAAATGGAC 57.250 29.630 14.70 8.92 41.02 4.02
1811 1855 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
1812 1856 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
1813 1857 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
1814 1858 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
1815 1859 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
1816 1860 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
1817 1861 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
1818 1862 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
1819 1863 7.529555 TCTACTCCCTCCGTTCCTAAATATAA 58.470 38.462 0.00 0.00 0.00 0.98
1820 1864 7.095183 TCTACTCCCTCCGTTCCTAAATATA 57.905 40.000 0.00 0.00 0.00 0.86
1821 1865 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
1822 1866 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
1823 1867 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
1824 1868 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
1825 1869 3.267812 TCTTCTACTCCCTCCGTTCCTAA 59.732 47.826 0.00 0.00 0.00 2.69
1826 1870 2.848694 TCTTCTACTCCCTCCGTTCCTA 59.151 50.000 0.00 0.00 0.00 2.94
1827 1871 1.639628 TCTTCTACTCCCTCCGTTCCT 59.360 52.381 0.00 0.00 0.00 3.36
1828 1872 2.025898 CTCTTCTACTCCCTCCGTTCC 58.974 57.143 0.00 0.00 0.00 3.62
1829 1873 3.002038 TCTCTTCTACTCCCTCCGTTC 57.998 52.381 0.00 0.00 0.00 3.95
1830 1874 3.053544 TGATCTCTTCTACTCCCTCCGTT 60.054 47.826 0.00 0.00 0.00 4.44
1831 1875 2.510382 TGATCTCTTCTACTCCCTCCGT 59.490 50.000 0.00 0.00 0.00 4.69
1832 1876 3.216187 TGATCTCTTCTACTCCCTCCG 57.784 52.381 0.00 0.00 0.00 4.63
1833 1877 4.086457 GGATGATCTCTTCTACTCCCTCC 58.914 52.174 0.00 0.00 0.00 4.30
1834 1878 4.735369 TGGATGATCTCTTCTACTCCCTC 58.265 47.826 0.00 0.00 0.00 4.30
1835 1879 4.823364 TGGATGATCTCTTCTACTCCCT 57.177 45.455 0.00 0.00 0.00 4.20
1836 1880 5.083122 TGATGGATGATCTCTTCTACTCCC 58.917 45.833 0.00 0.00 31.55 4.30
1837 1881 5.336690 GCTGATGGATGATCTCTTCTACTCC 60.337 48.000 0.00 0.00 31.55 3.85
1838 1882 5.336690 GGCTGATGGATGATCTCTTCTACTC 60.337 48.000 0.00 0.00 31.55 2.59
1839 1883 4.527816 GGCTGATGGATGATCTCTTCTACT 59.472 45.833 0.00 0.00 31.55 2.57
1840 1884 4.282957 TGGCTGATGGATGATCTCTTCTAC 59.717 45.833 0.00 0.00 31.55 2.59
1841 1885 4.282957 GTGGCTGATGGATGATCTCTTCTA 59.717 45.833 0.00 0.00 31.55 2.10
1842 1886 3.071312 GTGGCTGATGGATGATCTCTTCT 59.929 47.826 0.00 0.00 31.55 2.85
1854 1898 0.178767 TCGGATTCAGTGGCTGATGG 59.821 55.000 0.00 0.00 40.39 3.51
1874 1918 0.618981 AAAGGACAGGATTCCCCGAC 59.381 55.000 0.00 0.00 40.87 4.79
1876 1920 1.271926 ACAAAAGGACAGGATTCCCCG 60.272 52.381 0.00 0.00 40.87 5.73
1884 1928 4.739716 CACAAAATCGAACAAAAGGACAGG 59.260 41.667 0.00 0.00 0.00 4.00
1886 1930 5.355630 TCTCACAAAATCGAACAAAAGGACA 59.644 36.000 0.00 0.00 0.00 4.02
1915 1959 3.649986 GACGCAACGGCAAGCACT 61.650 61.111 0.00 0.00 41.24 4.40
1916 1960 3.649986 AGACGCAACGGCAAGCAC 61.650 61.111 0.00 0.00 37.34 4.40
1925 1969 1.639298 GGAGCATGTCCAGACGCAAC 61.639 60.000 8.84 0.00 46.10 4.17
1951 1995 5.519566 CACTGCTACTCTTGATCTCACAATC 59.480 44.000 0.00 0.00 0.00 2.67
2082 2126 7.846107 CCATATCGAAATCTAAAACGACAACTG 59.154 37.037 0.00 0.00 37.58 3.16
2109 2153 5.973899 TGACCAAAGCTATGCACAAAATA 57.026 34.783 0.00 0.00 0.00 1.40
2182 2226 9.575868 TTTTCATCACCAACCACTTAGTATTAA 57.424 29.630 0.00 0.00 0.00 1.40
2183 2227 9.575868 TTTTTCATCACCAACCACTTAGTATTA 57.424 29.630 0.00 0.00 0.00 0.98
2184 2228 8.472007 TTTTTCATCACCAACCACTTAGTATT 57.528 30.769 0.00 0.00 0.00 1.89
2310 2367 5.548406 ACGCAGGTTACTAACAGAAGAAAT 58.452 37.500 1.40 0.00 0.00 2.17
2430 2487 7.228507 GGCCATAACACATATTTCAGATGTACA 59.771 37.037 0.00 0.00 35.75 2.90
2465 2522 7.001674 AGTGTACCCTGATGAAAACATTGTTA 58.998 34.615 1.76 0.00 0.00 2.41
2471 2528 4.698201 TGAGTGTACCCTGATGAAAACA 57.302 40.909 0.00 0.00 0.00 2.83
2477 2534 6.764308 ATTTTTGATGAGTGTACCCTGATG 57.236 37.500 0.00 0.00 0.00 3.07
2499 2556 9.343539 GTTATGGAGCTGGAATAGTTTAGAAAT 57.656 33.333 0.00 0.00 0.00 2.17
2509 2566 4.278669 GTCGAGAGTTATGGAGCTGGAATA 59.721 45.833 0.00 0.00 0.00 1.75
2572 2629 6.266168 TCCAAATAATACAACTTGGTGCAG 57.734 37.500 0.00 0.00 39.51 4.41
2577 2634 9.840427 CTTAGTGTTCCAAATAATACAACTTGG 57.160 33.333 0.00 0.00 39.80 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.