Multiple sequence alignment - TraesCS7D01G159800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G159800 chr7D 100.000 6063 0 0 1 6063 109176167 109170105 0.000000e+00 11197.0
1 TraesCS7D01G159800 chr7D 91.102 236 13 5 5013 5248 109015355 109015128 4.560000e-81 313.0
2 TraesCS7D01G159800 chr7D 86.500 200 27 0 3057 3256 109017316 109017117 2.840000e-53 220.0
3 TraesCS7D01G159800 chr7D 90.411 146 14 0 3325 3470 109016393 109016248 6.200000e-45 193.0
4 TraesCS7D01G159800 chr7D 100.000 32 0 0 5686 5717 109170418 109170387 6.560000e-05 60.2
5 TraesCS7D01G159800 chr7D 100.000 32 0 0 5750 5781 109170482 109170451 6.560000e-05 60.2
6 TraesCS7D01G159800 chr7A 91.716 5263 292 72 90 5248 115209091 115203869 0.000000e+00 7171.0
7 TraesCS7D01G159800 chr7A 80.312 320 37 13 4102 4400 115017245 115016931 1.020000e-52 219.0
8 TraesCS7D01G159800 chr7A 95.283 106 5 0 4166 4271 115200560 115200455 1.050000e-37 169.0
9 TraesCS7D01G159800 chr7B 91.128 5230 320 81 90 5248 68349307 68344151 0.000000e+00 6955.0
10 TraesCS7D01G159800 chr7B 83.429 875 102 24 4126 4970 68318159 68317298 0.000000e+00 773.0
11 TraesCS7D01G159800 chr7B 81.000 300 26 16 5388 5667 68343369 68343081 6.160000e-50 209.0
12 TraesCS7D01G159800 chr7B 92.632 95 3 1 5013 5107 68317289 68317199 3.810000e-27 134.0
13 TraesCS7D01G159800 chr7B 86.765 68 0 4 1 59 68349414 68349347 3.920000e-07 67.6
14 TraesCS7D01G159800 chr6D 82.624 282 45 4 5763 6042 406173065 406172786 4.690000e-61 246.0
15 TraesCS7D01G159800 chr6D 80.427 281 50 4 5763 6042 424538133 424537857 6.160000e-50 209.0
16 TraesCS7D01G159800 chr5D 81.413 269 47 2 5763 6031 255977897 255978162 3.680000e-52 217.0
17 TraesCS7D01G159800 chr5A 79.443 287 51 3 5763 6048 623527617 623527896 4.790000e-46 196.0
18 TraesCS7D01G159800 chr3A 80.303 264 47 3 5763 6026 654513930 654514188 1.720000e-45 195.0
19 TraesCS7D01G159800 chr3A 79.401 267 45 6 5763 6029 654555582 654555838 4.830000e-41 180.0
20 TraesCS7D01G159800 chr3D 82.126 207 35 2 5763 5969 519604345 519604549 6.250000e-40 176.0
21 TraesCS7D01G159800 chrUn 78.322 286 43 15 5771 6048 28618997 28618723 3.760000e-37 167.0
22 TraesCS7D01G159800 chr4A 81.218 197 36 1 5763 5958 668291730 668291926 2.260000e-34 158.0
23 TraesCS7D01G159800 chr1B 83.708 178 18 8 1727 1895 11184655 11184830 2.260000e-34 158.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G159800 chr7D 109170105 109176167 6062 True 11197.000000 11197 100.000000 1 6063 1 chr7D.!!$R1 6062
1 TraesCS7D01G159800 chr7D 109015128 109017316 2188 True 242.000000 313 89.337667 3057 5248 3 chr7D.!!$R2 2191
2 TraesCS7D01G159800 chr7A 115200455 115209091 8636 True 3670.000000 7171 93.499500 90 5248 2 chr7A.!!$R2 5158
3 TraesCS7D01G159800 chr7B 68343081 68349414 6333 True 2410.533333 6955 86.297667 1 5667 3 chr7B.!!$R2 5666
4 TraesCS7D01G159800 chr7B 68317199 68318159 960 True 453.500000 773 88.030500 4126 5107 2 chr7B.!!$R1 981

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
78 112 0.037160 TCGGGGTTTGGGTTTAGCTC 59.963 55.0 0.00 0.00 0.00 4.09 F
81 115 0.251033 GGGTTTGGGTTTAGCTCCGT 60.251 55.0 0.00 0.00 0.00 4.69 F
84 118 0.037160 TTTGGGTTTAGCTCCGTCCC 59.963 55.0 0.00 0.00 38.68 4.46 F
1351 1459 0.322975 AGACAGGGTAGTGCTGCTTG 59.677 55.0 0.00 0.00 0.00 4.01 F
2618 2755 0.695924 TGGCCAGGTAAAGCTGCTTA 59.304 50.0 16.31 1.49 0.00 3.09 F
3089 3238 0.100325 CAGAGCGTCCTACAGAGCTG 59.900 60.0 0.00 0.00 40.39 4.24 F
4236 5109 0.533085 TGAACCGTGTTCGCAATGGA 60.533 50.0 10.76 0.00 35.54 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1707 1834 0.676184 TCAGCTCTTCAACAGCGAGT 59.324 50.000 0.00 0.00 42.14 4.18 R
1764 1891 1.833630 CCTGGGACTTACTGCTCATCA 59.166 52.381 0.00 0.00 0.00 3.07 R
1779 1906 4.860022 ACTGGTTAAGATTTCATCCTGGG 58.140 43.478 0.00 0.00 0.00 4.45 R
2703 2840 0.035056 CCAAAGCCCGGACTTGATCT 60.035 55.000 2.86 0.00 0.00 2.75 R
3694 4562 0.107800 CAGTCATGTCTGCTCCAGGG 60.108 60.000 7.03 0.00 31.51 4.45 R
4937 6121 0.255318 AGCAGCCTGGATTCAAGAGG 59.745 55.000 0.00 0.00 0.00 3.69 R
5792 8853 0.034896 GATTGGCCGTATCCGTGGAT 59.965 55.000 6.63 6.63 38.54 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.682292 CTGAGGCGGCCCTACCAAC 62.682 68.421 17.02 0.00 43.12 3.77
74 108 0.110869 CCACTCGGGGTTTGGGTTTA 59.889 55.000 0.00 0.00 0.00 2.01
75 109 1.530323 CACTCGGGGTTTGGGTTTAG 58.470 55.000 0.00 0.00 0.00 1.85
76 110 0.251033 ACTCGGGGTTTGGGTTTAGC 60.251 55.000 0.00 0.00 0.00 3.09
77 111 0.037734 CTCGGGGTTTGGGTTTAGCT 59.962 55.000 0.00 0.00 0.00 3.32
78 112 0.037160 TCGGGGTTTGGGTTTAGCTC 59.963 55.000 0.00 0.00 0.00 4.09
79 113 0.963856 CGGGGTTTGGGTTTAGCTCC 60.964 60.000 0.00 0.00 0.00 4.70
80 114 0.963856 GGGGTTTGGGTTTAGCTCCG 60.964 60.000 0.00 0.00 0.00 4.63
81 115 0.251033 GGGTTTGGGTTTAGCTCCGT 60.251 55.000 0.00 0.00 0.00 4.69
82 116 1.162698 GGTTTGGGTTTAGCTCCGTC 58.837 55.000 0.00 0.00 0.00 4.79
83 117 1.162698 GTTTGGGTTTAGCTCCGTCC 58.837 55.000 0.00 0.00 0.00 4.79
84 118 0.037160 TTTGGGTTTAGCTCCGTCCC 59.963 55.000 0.00 0.00 38.68 4.46
85 119 1.844544 TTGGGTTTAGCTCCGTCCCC 61.845 60.000 11.81 6.77 37.52 4.81
86 120 1.993948 GGGTTTAGCTCCGTCCCCT 60.994 63.158 0.00 0.00 32.66 4.79
87 121 0.688749 GGGTTTAGCTCCGTCCCCTA 60.689 60.000 0.00 0.00 32.66 3.53
88 122 0.463204 GGTTTAGCTCCGTCCCCTAC 59.537 60.000 0.00 0.00 0.00 3.18
120 154 0.615331 TGTCCTCCTGGATCTTGCAC 59.385 55.000 0.00 0.00 45.29 4.57
206 251 2.359230 GCCTCTGGTGTCAGCCAC 60.359 66.667 0.00 0.00 43.74 5.01
215 260 1.202818 GGTGTCAGCCACTTCTTTCCT 60.203 52.381 0.00 0.00 43.94 3.36
218 263 1.801178 GTCAGCCACTTCTTTCCTTCG 59.199 52.381 0.00 0.00 0.00 3.79
219 264 1.416401 TCAGCCACTTCTTTCCTTCGT 59.584 47.619 0.00 0.00 0.00 3.85
220 265 2.158813 TCAGCCACTTCTTTCCTTCGTT 60.159 45.455 0.00 0.00 0.00 3.85
226 271 2.101917 ACTTCTTTCCTTCGTTCCGTGA 59.898 45.455 0.00 0.00 0.00 4.35
300 367 1.584308 GTCACTCGCTTTGATCGCTAC 59.416 52.381 0.00 0.00 0.00 3.58
301 368 0.924090 CACTCGCTTTGATCGCTACC 59.076 55.000 0.00 0.00 0.00 3.18
312 379 2.028112 TGATCGCTACCAGTTTCTTGCT 60.028 45.455 0.00 0.00 0.00 3.91
324 391 1.032014 TTCTTGCTCCGCTGCTTTTT 58.968 45.000 0.00 0.00 0.00 1.94
325 392 0.593128 TCTTGCTCCGCTGCTTTTTC 59.407 50.000 0.00 0.00 0.00 2.29
326 393 0.387750 CTTGCTCCGCTGCTTTTTCC 60.388 55.000 0.00 0.00 0.00 3.13
327 394 1.805428 TTGCTCCGCTGCTTTTTCCC 61.805 55.000 0.00 0.00 0.00 3.97
338 405 0.470268 CTTTTTCCCCGGGGGTTTCA 60.470 55.000 39.51 17.83 44.74 2.69
386 453 2.511600 CGTCACCTCAATCCCGCC 60.512 66.667 0.00 0.00 0.00 6.13
453 520 1.134788 CCTAGATTCCTCGCACGGTTT 60.135 52.381 0.00 0.00 0.00 3.27
493 561 7.567250 TCCTCTTCTTTTCCCCAAATTTTTACT 59.433 33.333 0.00 0.00 0.00 2.24
495 563 7.732025 TCTTCTTTTCCCCAAATTTTTACTCC 58.268 34.615 0.00 0.00 0.00 3.85
505 573 4.766404 AATTTTTACTCCGAGCCAGTTG 57.234 40.909 0.00 0.00 0.00 3.16
511 579 1.160137 CTCCGAGCCAGTTGGAAAAG 58.840 55.000 1.45 0.00 38.39 2.27
518 586 4.554723 CGAGCCAGTTGGAAAAGTTTAGTG 60.555 45.833 1.45 0.00 37.39 2.74
549 617 4.520492 TCTCAAGGAGATTTTTGGTCAAGC 59.480 41.667 0.00 0.00 33.35 4.01
550 618 3.253188 TCAAGGAGATTTTTGGTCAAGCG 59.747 43.478 0.00 0.00 0.00 4.68
551 619 2.863809 AGGAGATTTTTGGTCAAGCGT 58.136 42.857 0.00 0.00 0.00 5.07
567 635 4.577283 TCAAGCGTAAGTTTTTGGTTAGCT 59.423 37.500 0.00 0.00 39.40 3.32
584 652 0.750911 GCTTGGGATCTTGCCTGAGG 60.751 60.000 0.00 0.00 0.00 3.86
623 693 4.812814 GCCATTTTGCGGCCTTAG 57.187 55.556 0.00 0.00 44.22 2.18
644 715 8.562892 CCTTAGTCGCATCAATGATCTAAAAAT 58.437 33.333 0.00 0.00 0.00 1.82
651 722 8.847567 CGCATCAATGATCTAAAAATAATCAGC 58.152 33.333 0.00 0.00 33.24 4.26
729 802 2.582052 GACTGGTTTGGTGTGGAATCA 58.418 47.619 0.00 0.00 0.00 2.57
731 804 1.888512 CTGGTTTGGTGTGGAATCAGG 59.111 52.381 0.00 0.00 31.82 3.86
732 805 1.496857 TGGTTTGGTGTGGAATCAGGA 59.503 47.619 0.00 0.00 0.00 3.86
733 806 2.162681 GGTTTGGTGTGGAATCAGGAG 58.837 52.381 0.00 0.00 0.00 3.69
734 807 2.224769 GGTTTGGTGTGGAATCAGGAGA 60.225 50.000 0.00 0.00 0.00 3.71
778 851 6.364945 AGATTAATGCTCGCTTTACCTTTC 57.635 37.500 0.00 0.00 0.00 2.62
804 877 7.274904 CCGTTACTTTGATTTCTTCGATCTGTA 59.725 37.037 0.00 0.00 0.00 2.74
852 934 5.420421 TCTCTGAGTAGTCTTGATTTCCAGG 59.580 44.000 4.32 0.00 0.00 4.45
853 935 5.087323 TCTGAGTAGTCTTGATTTCCAGGT 58.913 41.667 0.00 0.00 0.00 4.00
854 936 5.544176 TCTGAGTAGTCTTGATTTCCAGGTT 59.456 40.000 0.00 0.00 0.00 3.50
856 938 6.601332 TGAGTAGTCTTGATTTCCAGGTTTT 58.399 36.000 0.00 0.00 0.00 2.43
911 996 3.475566 TGATATCCTAGTGGCTGTTGC 57.524 47.619 0.00 0.00 38.76 4.17
938 1026 3.572255 TGGTTCTTGGGCAAGTAAATGTC 59.428 43.478 0.00 0.00 39.38 3.06
962 1050 1.644509 TTCTCCAAGGCTGACTGCTA 58.355 50.000 4.20 0.00 42.39 3.49
963 1051 1.644509 TCTCCAAGGCTGACTGCTAA 58.355 50.000 4.20 0.00 42.39 3.09
978 1066 6.003950 TGACTGCTAAATCTTTACCTTGCTT 58.996 36.000 0.00 0.00 0.00 3.91
1156 1250 4.708177 ACCTCTGTTATGGATCCAAATCG 58.292 43.478 20.67 6.80 32.24 3.34
1191 1285 7.177216 TGGTGCAAGTTTCATTCTCATCTTTAT 59.823 33.333 0.00 0.00 0.00 1.40
1250 1344 4.213906 TGATGCATGCATATCTTTGGTACG 59.786 41.667 32.27 0.00 36.70 3.67
1258 1352 6.213677 TGCATATCTTTGGTACGTCATAGTC 58.786 40.000 0.00 0.00 0.00 2.59
1260 1354 6.363626 GCATATCTTTGGTACGTCATAGTCAG 59.636 42.308 0.00 0.00 0.00 3.51
1302 1405 9.462174 GATCATGTTGAAATGTTGTTTGTTCTA 57.538 29.630 0.00 0.00 0.00 2.10
1307 1410 8.462811 TGTTGAAATGTTGTTTGTTCTAAGCTA 58.537 29.630 0.00 0.00 0.00 3.32
1308 1411 8.958043 GTTGAAATGTTGTTTGTTCTAAGCTAG 58.042 33.333 0.00 0.00 0.00 3.42
1309 1412 8.445275 TGAAATGTTGTTTGTTCTAAGCTAGA 57.555 30.769 0.00 0.00 0.00 2.43
1310 1413 8.342634 TGAAATGTTGTTTGTTCTAAGCTAGAC 58.657 33.333 0.00 0.00 33.84 2.59
1311 1414 7.801716 AATGTTGTTTGTTCTAAGCTAGACA 57.198 32.000 0.00 0.00 33.84 3.41
1350 1458 1.550976 GTAGACAGGGTAGTGCTGCTT 59.449 52.381 0.00 0.00 0.00 3.91
1351 1459 0.322975 AGACAGGGTAGTGCTGCTTG 59.677 55.000 0.00 0.00 0.00 4.01
1383 1492 6.070251 TCAGCTGTAGGAAAAATATGAGGTGA 60.070 38.462 14.67 0.00 35.09 4.02
1540 1651 1.830587 AAGACATCCTCCGTGCTGCA 61.831 55.000 0.00 0.00 0.00 4.41
1550 1661 1.569493 CGTGCTGCACAGGTAACAC 59.431 57.895 29.86 2.40 41.41 3.32
1570 1686 2.289694 ACCTGCGACTTAACTGCTCAAT 60.290 45.455 0.00 0.00 0.00 2.57
1598 1714 8.413229 GCCTGCCAGTTGAATTTTATTCTAATA 58.587 33.333 0.00 0.00 0.00 0.98
1764 1891 2.036346 GGCATTCAAGGAACAGCTTGTT 59.964 45.455 0.00 1.82 44.37 2.83
1779 1906 3.999663 AGCTTGTTGATGAGCAGTAAGTC 59.000 43.478 0.00 0.00 41.31 3.01
1780 1907 3.126000 GCTTGTTGATGAGCAGTAAGTCC 59.874 47.826 0.00 0.00 38.73 3.85
1796 1923 7.338710 CAGTAAGTCCCAGGATGAAATCTTAA 58.661 38.462 0.00 0.00 44.71 1.85
1814 1941 8.706322 AATCTTAACCAGTTGTAGGTGAATTT 57.294 30.769 0.00 0.00 39.86 1.82
1908 2035 4.625028 AGCTTGATTTTGAGCCTTTCAAC 58.375 39.130 0.00 0.00 45.22 3.18
2066 2193 1.774894 AAGGGCACGGTAAGCTTCCA 61.775 55.000 0.00 0.00 0.00 3.53
2122 2258 7.725818 ATCACTTATGAACATGACATGCTAG 57.274 36.000 15.49 6.46 38.69 3.42
2312 2448 7.595819 TCTGAATTCAACCACAGGTTATTTT 57.404 32.000 9.88 0.00 45.01 1.82
2324 2460 6.128580 CCACAGGTTATTTTTATGCAACTTGC 60.129 38.462 6.82 6.82 45.29 4.01
2345 2481 2.643551 CCTTACCATGTAGCCAAGGTG 58.356 52.381 0.74 0.00 42.44 4.00
2349 2485 2.795329 ACCATGTAGCCAAGGTGAAAG 58.205 47.619 0.00 0.00 41.01 2.62
2383 2520 4.335594 GGAATAGCTGCTTACGGTTTGAAT 59.664 41.667 7.79 0.00 0.00 2.57
2464 2601 3.499338 TGACACCATCCATTTGCTTCTT 58.501 40.909 0.00 0.00 0.00 2.52
2512 2649 0.884514 GCTTGGAGAAGTTCCTTGGC 59.115 55.000 0.00 0.00 46.92 4.52
2551 2688 3.327464 TCAATGTTGTCATCCTGTCTCCA 59.673 43.478 0.00 0.00 32.56 3.86
2618 2755 0.695924 TGGCCAGGTAAAGCTGCTTA 59.304 50.000 16.31 1.49 0.00 3.09
2634 2771 7.880059 AGCTGCTTAAAATCAAATTTCTGTC 57.120 32.000 0.00 0.00 0.00 3.51
2640 2777 8.854312 GCTTAAAATCAAATTTCTGTCAGCTAC 58.146 33.333 0.00 0.00 0.00 3.58
2647 2784 7.671302 TCAAATTTCTGTCAGCTACTACTTCT 58.329 34.615 0.00 0.00 0.00 2.85
2649 2786 9.424319 CAAATTTCTGTCAGCTACTACTTCTAA 57.576 33.333 0.00 0.00 0.00 2.10
2703 2840 8.373048 CTGTTTTACAGGTTGTGTACATCTTA 57.627 34.615 0.00 0.00 41.58 2.10
2763 2900 3.367395 GGATTAAGCAACAAGGCCTTGAC 60.367 47.826 44.50 32.20 42.93 3.18
2772 2909 2.644798 ACAAGGCCTTGACATAACTCCT 59.355 45.455 44.50 20.55 42.93 3.69
2794 2931 7.861629 TCCTAAGATCCTCATTGTATGTTTGT 58.138 34.615 0.00 0.00 0.00 2.83
2795 2932 7.987458 TCCTAAGATCCTCATTGTATGTTTGTC 59.013 37.037 0.00 0.00 0.00 3.18
2824 2961 7.388437 ACAATGTTGGATGTTGCAATTTCTAT 58.612 30.769 0.59 0.00 28.47 1.98
2828 2965 6.015603 TGTTGGATGTTGCAATTTCTATGACA 60.016 34.615 0.59 0.94 28.47 3.58
2833 2970 7.221452 GGATGTTGCAATTTCTATGACATTGTC 59.779 37.037 9.93 9.93 33.73 3.18
2834 2971 6.979465 TGTTGCAATTTCTATGACATTGTCA 58.021 32.000 21.05 21.05 46.90 3.58
2837 2974 6.614160 TGCAATTTCTATGACATTGTCAGTG 58.386 36.000 22.82 17.26 46.04 3.66
2838 2975 6.207221 TGCAATTTCTATGACATTGTCAGTGT 59.793 34.615 22.82 10.52 46.04 3.55
2840 2977 5.611796 TTTCTATGACATTGTCAGTGTGC 57.388 39.130 22.82 0.00 46.04 4.57
2841 2978 4.541973 TCTATGACATTGTCAGTGTGCT 57.458 40.909 22.82 9.18 46.04 4.40
2842 2979 4.248058 TCTATGACATTGTCAGTGTGCTG 58.752 43.478 22.82 9.02 46.04 4.41
2869 3018 4.713792 AAATGTGCCCACCCAATTTTAA 57.286 36.364 0.00 0.00 0.00 1.52
2872 3021 4.713792 TGTGCCCACCCAATTTTAATTT 57.286 36.364 0.00 0.00 0.00 1.82
2881 3030 6.538381 CCACCCAATTTTAATTTATGCAGGTC 59.462 38.462 0.00 0.00 0.00 3.85
2911 3060 0.111061 TGCCTGATGCTGTTGGAACT 59.889 50.000 0.00 0.00 42.00 3.01
2926 3075 1.982073 GAACTACATGTGGCCAGCGC 61.982 60.000 5.11 0.00 0.00 5.92
2977 3126 3.750371 TGACATTCTCCGTGTTCCATTT 58.250 40.909 0.00 0.00 0.00 2.32
3064 3213 6.148811 AGACATACACCGAGGTAAATGTTTTG 59.851 38.462 17.36 7.12 34.74 2.44
3089 3238 0.100325 CAGAGCGTCCTACAGAGCTG 59.900 60.000 0.00 0.00 40.39 4.24
3222 3372 1.626825 GGTAACCTTGTGGCCACTCTA 59.373 52.381 34.75 19.43 36.63 2.43
3541 4409 2.033299 AGAAACATTGTTGGCTGTGACG 59.967 45.455 2.13 0.00 0.00 4.35
3694 4562 4.451629 TCCTAAGTTCAACATCGTCTCC 57.548 45.455 0.00 0.00 0.00 3.71
3724 4592 3.152261 GACATGACTGTCTACTTCCCG 57.848 52.381 9.51 0.00 46.84 5.14
3848 4716 6.084277 TCTATGTGATGTAATAACTAGCGCG 58.916 40.000 0.00 0.00 0.00 6.86
3871 4739 5.362263 GTTTCACCTGGTTTACAGTAGTGA 58.638 41.667 4.09 0.00 46.06 3.41
3882 4750 7.225931 TGGTTTACAGTAGTGACTTCAATGTTC 59.774 37.037 4.09 0.00 31.73 3.18
3883 4751 7.307811 GGTTTACAGTAGTGACTTCAATGTTCC 60.308 40.741 4.09 0.00 31.73 3.62
3884 4752 5.290493 ACAGTAGTGACTTCAATGTTCCA 57.710 39.130 4.09 0.00 31.73 3.53
3889 4757 5.248870 AGTGACTTCAATGTTCCAAACAC 57.751 39.130 0.00 0.00 45.50 3.32
3897 4765 5.587289 TCAATGTTCCAAACACTTGCTTAC 58.413 37.500 0.00 0.00 45.50 2.34
3898 4766 5.359576 TCAATGTTCCAAACACTTGCTTACT 59.640 36.000 0.00 0.00 45.50 2.24
3913 4781 5.414789 TGCTTACTTTCTGCTGTATGGTA 57.585 39.130 0.00 0.00 0.00 3.25
3915 4783 5.817296 TGCTTACTTTCTGCTGTATGGTATG 59.183 40.000 0.00 0.00 0.00 2.39
3921 4789 1.538512 CTGCTGTATGGTATGCATGCC 59.461 52.381 25.45 25.45 34.79 4.40
3925 4793 3.225104 CTGTATGGTATGCATGCCCTTT 58.775 45.455 28.35 16.56 0.00 3.11
3926 4794 2.957680 TGTATGGTATGCATGCCCTTTG 59.042 45.455 28.35 0.00 0.00 2.77
4143 5011 2.220586 GGATAGGGAGGAGCAGGCC 61.221 68.421 0.00 0.00 0.00 5.19
4209 5082 1.339151 GGCCATATCCGTTGGATCTCC 60.339 57.143 0.00 0.00 42.11 3.71
4236 5109 0.533085 TGAACCGTGTTCGCAATGGA 60.533 50.000 10.76 0.00 35.54 3.41
4269 5146 1.140312 ACATCTGTGACACCAAGGGT 58.860 50.000 2.45 0.00 35.62 4.34
4401 5279 1.590932 AGCCTGCATTCTATGAAGCG 58.409 50.000 0.00 0.00 34.39 4.68
4446 5442 1.206578 GACATGTGGTTTGCCGACG 59.793 57.895 1.15 0.00 37.67 5.12
4737 5912 0.977395 ACACCTGGAAGCTGTACTCC 59.023 55.000 0.00 0.00 0.00 3.85
4792 5967 4.319177 GTTCTGGAAGTATGTGAGCAACT 58.681 43.478 0.00 0.00 33.76 3.16
4861 6036 0.739813 GTACCGCAGCCTGGTAAGTG 60.740 60.000 1.03 0.00 43.30 3.16
4862 6037 1.189524 TACCGCAGCCTGGTAAGTGT 61.190 55.000 0.00 0.00 38.98 3.55
4863 6038 1.741770 CCGCAGCCTGGTAAGTGTC 60.742 63.158 0.00 0.00 0.00 3.67
4864 6039 1.005037 CGCAGCCTGGTAAGTGTCA 60.005 57.895 0.00 0.00 0.00 3.58
4890 6074 2.102588 ACTGTCCGAGGGCAATGTATAC 59.897 50.000 0.00 0.00 0.00 1.47
4905 6089 5.957771 ATGTATACCAGTGTCCACTTCAT 57.042 39.130 0.00 0.00 40.20 2.57
4906 6090 5.084818 TGTATACCAGTGTCCACTTCATG 57.915 43.478 0.00 0.00 40.20 3.07
4935 6119 8.296713 ACTTGTCACTTATGATTTATGCGTTTT 58.703 29.630 0.00 0.00 37.14 2.43
4936 6120 8.667987 TTGTCACTTATGATTTATGCGTTTTC 57.332 30.769 0.00 0.00 37.14 2.29
4937 6121 7.247728 TGTCACTTATGATTTATGCGTTTTCC 58.752 34.615 0.00 0.00 37.14 3.13
5110 6304 0.597637 GTCTGGTCGTGGAGTGTGTG 60.598 60.000 0.00 0.00 0.00 3.82
5111 6305 1.956170 CTGGTCGTGGAGTGTGTGC 60.956 63.158 0.00 0.00 0.00 4.57
5185 6379 2.519826 CCAGCGGCATTTGTTGTTG 58.480 52.632 1.45 0.00 0.00 3.33
5186 6380 1.559149 CCAGCGGCATTTGTTGTTGC 61.559 55.000 1.45 0.00 38.14 4.17
5259 6479 4.981674 GCAATGTTTCGTCTTGGAAATTGA 59.018 37.500 0.00 0.00 38.12 2.57
5263 6483 5.527951 TGTTTCGTCTTGGAAATTGAATGG 58.472 37.500 0.00 0.00 38.12 3.16
5266 6486 3.435327 TCGTCTTGGAAATTGAATGGTCG 59.565 43.478 0.00 0.00 0.00 4.79
5291 6511 4.523943 CCCTTTTGTCATGAATGAACCTGA 59.476 41.667 0.00 0.00 38.75 3.86
5292 6512 5.464168 CCTTTTGTCATGAATGAACCTGAC 58.536 41.667 0.00 0.00 38.75 3.51
5293 6513 4.747540 TTTGTCATGAATGAACCTGACG 57.252 40.909 0.00 0.00 40.65 4.35
5294 6514 2.698803 TGTCATGAATGAACCTGACGG 58.301 47.619 0.00 0.00 40.65 4.79
5295 6515 1.398390 GTCATGAATGAACCTGACGGC 59.602 52.381 0.00 0.00 38.75 5.68
5296 6516 0.734889 CATGAATGAACCTGACGGCC 59.265 55.000 0.00 0.00 0.00 6.13
5297 6517 0.620556 ATGAATGAACCTGACGGCCT 59.379 50.000 0.00 0.00 0.00 5.19
5298 6518 0.036388 TGAATGAACCTGACGGCCTC 60.036 55.000 0.00 0.00 0.00 4.70
5299 6519 0.036388 GAATGAACCTGACGGCCTCA 60.036 55.000 0.00 2.72 31.98 3.86
5300 6520 0.321653 AATGAACCTGACGGCCTCAC 60.322 55.000 0.00 0.00 30.66 3.51
5301 6521 1.194781 ATGAACCTGACGGCCTCACT 61.195 55.000 0.00 0.00 30.66 3.41
5302 6522 1.374758 GAACCTGACGGCCTCACTG 60.375 63.158 0.00 0.00 0.00 3.66
5303 6523 2.100879 GAACCTGACGGCCTCACTGT 62.101 60.000 0.00 0.00 42.04 3.55
5331 6577 1.202687 TGCACTGTGGAGTTTCTCTGG 60.203 52.381 10.21 0.00 0.00 3.86
5343 6589 4.826556 AGTTTCTCTGGAGAATAGTGCAC 58.173 43.478 9.40 9.40 45.78 4.57
5344 6590 3.895232 TTCTCTGGAGAATAGTGCACC 57.105 47.619 14.63 0.00 42.06 5.01
5354 6600 2.584835 ATAGTGCACCTCTTGGCAAA 57.415 45.000 14.63 0.00 42.45 3.68
5359 6605 0.595095 GCACCTCTTGGCAAAGACAG 59.405 55.000 0.00 0.00 37.51 3.51
5375 6621 3.233507 AGACAGAACCAAATGCCAACAT 58.766 40.909 0.00 0.00 38.49 2.71
5385 6631 2.440517 ATGCCAACATCCTATGCACA 57.559 45.000 0.00 0.00 34.33 4.57
5386 6632 2.212812 TGCCAACATCCTATGCACAA 57.787 45.000 0.00 0.00 0.00 3.33
5387 6633 2.093890 TGCCAACATCCTATGCACAAG 58.906 47.619 0.00 0.00 0.00 3.16
5388 6634 1.406539 GCCAACATCCTATGCACAAGG 59.593 52.381 10.18 10.18 35.26 3.61
5389 6635 1.406539 CCAACATCCTATGCACAAGGC 59.593 52.381 11.39 0.00 45.13 4.35
5421 7410 1.298157 GCGACTGGCATAGCACACAA 61.298 55.000 0.00 0.00 42.87 3.33
5422 7411 0.723414 CGACTGGCATAGCACACAAG 59.277 55.000 0.00 0.00 0.00 3.16
5423 7412 1.813513 GACTGGCATAGCACACAAGT 58.186 50.000 0.00 0.00 0.00 3.16
5424 7413 1.734465 GACTGGCATAGCACACAAGTC 59.266 52.381 0.00 0.00 0.00 3.01
5425 7414 0.723414 CTGGCATAGCACACAAGTCG 59.277 55.000 0.00 0.00 0.00 4.18
5426 7415 0.320050 TGGCATAGCACACAAGTCGA 59.680 50.000 0.00 0.00 0.00 4.20
5428 7417 2.009774 GGCATAGCACACAAGTCGATT 58.990 47.619 0.00 0.00 0.00 3.34
5429 7418 3.194861 GGCATAGCACACAAGTCGATTA 58.805 45.455 0.00 0.00 0.00 1.75
5430 7419 3.246226 GGCATAGCACACAAGTCGATTAG 59.754 47.826 0.00 0.00 0.00 1.73
5433 7422 5.276584 GCATAGCACACAAGTCGATTAGAAG 60.277 44.000 0.00 0.00 0.00 2.85
5452 7441 2.151202 AGTTCCGTTGGTAATGCACTG 58.849 47.619 0.00 0.00 0.00 3.66
5459 7448 3.278574 GTTGGTAATGCACTGATAGCCA 58.721 45.455 0.00 0.00 0.00 4.75
5486 7476 1.738346 CTGACGGCGATGGAGATGGA 61.738 60.000 16.62 0.00 0.00 3.41
5491 7481 0.469917 GGCGATGGAGATGGAAGGAA 59.530 55.000 0.00 0.00 0.00 3.36
5494 7484 1.587547 GATGGAGATGGAAGGAACGC 58.412 55.000 0.00 0.00 0.00 4.84
5495 7485 1.139853 GATGGAGATGGAAGGAACGCT 59.860 52.381 0.00 0.00 0.00 5.07
5496 7486 0.250234 TGGAGATGGAAGGAACGCTG 59.750 55.000 0.00 0.00 0.00 5.18
5497 7487 0.537188 GGAGATGGAAGGAACGCTGA 59.463 55.000 0.00 0.00 0.00 4.26
5498 7488 1.066143 GGAGATGGAAGGAACGCTGAA 60.066 52.381 0.00 0.00 0.00 3.02
5499 7489 2.275318 GAGATGGAAGGAACGCTGAAG 58.725 52.381 0.00 0.00 0.00 3.02
5500 7490 1.625818 AGATGGAAGGAACGCTGAAGT 59.374 47.619 0.00 0.00 0.00 3.01
5501 7491 2.003301 GATGGAAGGAACGCTGAAGTC 58.997 52.381 0.00 0.00 0.00 3.01
5502 7492 1.048601 TGGAAGGAACGCTGAAGTCT 58.951 50.000 0.00 0.00 0.00 3.24
5508 7511 2.029470 AGGAACGCTGAAGTCTGAAGAG 60.029 50.000 0.00 0.00 0.00 2.85
5529 7532 6.982899 AGAGAGTTAATCAGTTACCTAGGGA 58.017 40.000 14.81 0.00 0.00 4.20
5536 7539 1.068741 CAGTTACCTAGGGATGTCCGC 59.931 57.143 14.81 0.00 41.52 5.54
5571 7575 4.039357 CACACTCGCCTCCGTCGT 62.039 66.667 0.00 0.00 35.54 4.34
5667 7706 3.531207 CCTCATCGCCGCCAGAGA 61.531 66.667 2.60 0.00 0.00 3.10
5668 7707 2.279120 CTCATCGCCGCCAGAGAC 60.279 66.667 0.00 0.00 0.00 3.36
5692 7731 4.011517 GGCCACGGACGGAGGAAA 62.012 66.667 0.00 0.00 0.00 3.13
5693 7732 2.267961 GCCACGGACGGAGGAAAT 59.732 61.111 9.19 0.00 0.00 2.17
5694 7733 2.106683 GCCACGGACGGAGGAAATG 61.107 63.158 9.19 0.00 0.00 2.32
5695 7734 1.594833 CCACGGACGGAGGAAATGA 59.405 57.895 0.00 0.00 0.00 2.57
5696 7735 0.036765 CCACGGACGGAGGAAATGAA 60.037 55.000 0.00 0.00 0.00 2.57
5697 7736 1.406887 CCACGGACGGAGGAAATGAAT 60.407 52.381 0.00 0.00 0.00 2.57
5698 7737 1.665679 CACGGACGGAGGAAATGAATG 59.334 52.381 0.00 0.00 0.00 2.67
5699 7738 1.553248 ACGGACGGAGGAAATGAATGA 59.447 47.619 0.00 0.00 0.00 2.57
5700 7739 2.027561 ACGGACGGAGGAAATGAATGAA 60.028 45.455 0.00 0.00 0.00 2.57
5701 7740 2.609459 CGGACGGAGGAAATGAATGAAG 59.391 50.000 0.00 0.00 0.00 3.02
5702 7741 3.678806 CGGACGGAGGAAATGAATGAAGA 60.679 47.826 0.00 0.00 0.00 2.87
5703 7742 3.873952 GGACGGAGGAAATGAATGAAGAG 59.126 47.826 0.00 0.00 0.00 2.85
5704 7743 3.274288 ACGGAGGAAATGAATGAAGAGC 58.726 45.455 0.00 0.00 0.00 4.09
5705 7744 2.615912 CGGAGGAAATGAATGAAGAGCC 59.384 50.000 0.00 0.00 0.00 4.70
5707 7746 2.954989 GAGGAAATGAATGAAGAGCCCC 59.045 50.000 0.00 0.00 0.00 5.80
5708 7747 2.034878 GGAAATGAATGAAGAGCCCCC 58.965 52.381 0.00 0.00 0.00 5.40
5709 7748 2.358615 GGAAATGAATGAAGAGCCCCCT 60.359 50.000 0.00 0.00 0.00 4.79
5710 7749 3.369175 GAAATGAATGAAGAGCCCCCTT 58.631 45.455 0.00 0.00 0.00 3.95
5714 8775 1.283321 GAATGAAGAGCCCCCTTCTGT 59.717 52.381 10.97 1.65 42.20 3.41
5716 8777 0.693049 TGAAGAGCCCCCTTCTGTTC 59.307 55.000 10.97 0.00 42.20 3.18
5727 8788 2.135933 CCTTCTGTTCTGTTCACCGTC 58.864 52.381 0.00 0.00 0.00 4.79
5730 8791 2.546778 TCTGTTCTGTTCACCGTCAAC 58.453 47.619 0.00 0.00 0.00 3.18
5732 8793 2.675844 CTGTTCTGTTCACCGTCAACAA 59.324 45.455 0.00 0.00 33.36 2.83
5733 8794 3.275143 TGTTCTGTTCACCGTCAACAAT 58.725 40.909 0.00 0.00 33.36 2.71
5734 8795 4.443621 TGTTCTGTTCACCGTCAACAATA 58.556 39.130 0.00 0.00 33.36 1.90
5735 8796 4.876679 TGTTCTGTTCACCGTCAACAATAA 59.123 37.500 0.00 0.00 33.36 1.40
5736 8797 5.354513 TGTTCTGTTCACCGTCAACAATAAA 59.645 36.000 0.00 0.00 33.36 1.40
5737 8798 5.412526 TCTGTTCACCGTCAACAATAAAC 57.587 39.130 0.00 0.00 33.36 2.01
5740 8801 6.762187 TCTGTTCACCGTCAACAATAAACTTA 59.238 34.615 0.00 0.00 33.36 2.24
5753 8814 8.711457 CAACAATAAACTTATTTTGCAAGGAGG 58.289 33.333 0.00 0.00 31.28 4.30
5759 8820 6.916360 ACTTATTTTGCAAGGAGGAAATGA 57.084 33.333 0.00 0.00 37.40 2.57
5761 8822 7.910584 ACTTATTTTGCAAGGAGGAAATGAAT 58.089 30.769 0.00 0.00 37.40 2.57
5763 8824 5.804944 TTTTGCAAGGAGGAAATGAATGA 57.195 34.783 0.00 0.00 37.40 2.57
5764 8825 5.804944 TTTGCAAGGAGGAAATGAATGAA 57.195 34.783 0.00 0.00 32.17 2.57
5766 8827 4.665451 TGCAAGGAGGAAATGAATGAAGA 58.335 39.130 0.00 0.00 0.00 2.87
5767 8828 4.703575 TGCAAGGAGGAAATGAATGAAGAG 59.296 41.667 0.00 0.00 0.00 2.85
5768 8829 4.439837 GCAAGGAGGAAATGAATGAAGAGC 60.440 45.833 0.00 0.00 0.00 4.09
5770 8831 2.954989 GGAGGAAATGAATGAAGAGCCC 59.045 50.000 0.00 0.00 0.00 5.19
5771 8832 2.954989 GAGGAAATGAATGAAGAGCCCC 59.045 50.000 0.00 0.00 0.00 5.80
5772 8833 2.034878 GGAAATGAATGAAGAGCCCCC 58.965 52.381 0.00 0.00 0.00 5.40
5773 8834 2.358615 GGAAATGAATGAAGAGCCCCCT 60.359 50.000 0.00 0.00 0.00 4.79
5774 8835 3.369175 GAAATGAATGAAGAGCCCCCTT 58.631 45.455 0.00 0.00 0.00 3.95
5775 8836 2.744352 ATGAATGAAGAGCCCCCTTC 57.256 50.000 0.00 0.00 42.09 3.46
5776 8837 1.673767 TGAATGAAGAGCCCCCTTCT 58.326 50.000 10.97 0.00 42.20 2.85
5777 8838 1.283029 TGAATGAAGAGCCCCCTTCTG 59.717 52.381 10.97 0.00 42.20 3.02
5778 8839 1.283321 GAATGAAGAGCCCCCTTCTGT 59.717 52.381 10.97 1.65 42.20 3.41
5779 8840 1.376649 ATGAAGAGCCCCCTTCTGTT 58.623 50.000 10.97 0.00 42.20 3.16
5782 8843 0.476611 AAGAGCCCCCTTCTGTTCCT 60.477 55.000 0.00 0.00 0.00 3.36
5785 8846 3.170362 CCCCCTTCTGTTCCTGCA 58.830 61.111 0.00 0.00 0.00 4.41
5786 8847 1.693640 CCCCCTTCTGTTCCTGCAT 59.306 57.895 0.00 0.00 0.00 3.96
5787 8848 0.682209 CCCCCTTCTGTTCCTGCATG 60.682 60.000 0.00 0.00 0.00 4.06
5788 8849 0.038744 CCCCTTCTGTTCCTGCATGT 59.961 55.000 0.00 0.00 0.00 3.21
5789 8850 1.281867 CCCCTTCTGTTCCTGCATGTA 59.718 52.381 0.00 0.00 0.00 2.29
5790 8851 2.290896 CCCCTTCTGTTCCTGCATGTAA 60.291 50.000 0.00 0.00 0.00 2.41
5792 8853 3.826157 CCCTTCTGTTCCTGCATGTAAAA 59.174 43.478 0.00 0.00 0.00 1.52
5793 8854 4.463891 CCCTTCTGTTCCTGCATGTAAAAT 59.536 41.667 0.00 0.00 0.00 1.82
5794 8855 5.393461 CCCTTCTGTTCCTGCATGTAAAATC 60.393 44.000 0.00 0.00 0.00 2.17
5795 8856 5.393461 CCTTCTGTTCCTGCATGTAAAATCC 60.393 44.000 0.00 0.00 0.00 3.01
5797 8858 4.458989 TCTGTTCCTGCATGTAAAATCCAC 59.541 41.667 0.00 0.00 0.00 4.02
5799 8860 2.364632 TCCTGCATGTAAAATCCACGG 58.635 47.619 0.00 0.00 0.00 4.94
5800 8861 2.026729 TCCTGCATGTAAAATCCACGGA 60.027 45.455 0.00 0.00 0.00 4.69
5801 8862 2.951642 CCTGCATGTAAAATCCACGGAT 59.048 45.455 0.00 0.00 36.23 4.18
5816 8877 3.019964 GGATACGGCCAATCATGCA 57.980 52.632 15.14 0.00 0.00 3.96
5817 8878 1.538047 GGATACGGCCAATCATGCAT 58.462 50.000 15.14 0.00 0.00 3.96
5818 8879 1.470098 GGATACGGCCAATCATGCATC 59.530 52.381 15.14 0.00 0.00 3.91
5819 8880 1.129251 GATACGGCCAATCATGCATCG 59.871 52.381 2.24 0.00 0.00 3.84
5820 8881 0.179059 TACGGCCAATCATGCATCGT 60.179 50.000 2.24 11.38 0.00 3.73
5822 8883 0.235665 CGGCCAATCATGCATCGTAC 59.764 55.000 2.24 0.00 0.00 3.67
5823 8884 1.308047 GGCCAATCATGCATCGTACA 58.692 50.000 0.00 0.00 0.00 2.90
5826 8887 1.941975 CCAATCATGCATCGTACAGCA 59.058 47.619 0.00 7.03 45.92 4.41
5827 8888 2.355444 CCAATCATGCATCGTACAGCAA 59.645 45.455 0.00 0.00 44.88 3.91
5828 8889 3.357021 CAATCATGCATCGTACAGCAAC 58.643 45.455 0.00 0.00 44.88 4.17
5829 8890 2.385013 TCATGCATCGTACAGCAACT 57.615 45.000 0.00 0.00 44.88 3.16
5830 8891 2.270923 TCATGCATCGTACAGCAACTC 58.729 47.619 0.00 0.00 44.88 3.01
5831 8892 2.001872 CATGCATCGTACAGCAACTCA 58.998 47.619 0.00 0.00 44.88 3.41
5832 8893 2.385013 TGCATCGTACAGCAACTCAT 57.615 45.000 2.53 0.00 37.90 2.90
5833 8894 2.270923 TGCATCGTACAGCAACTCATC 58.729 47.619 2.53 0.00 37.90 2.92
5834 8895 1.594862 GCATCGTACAGCAACTCATCC 59.405 52.381 0.00 0.00 0.00 3.51
5835 8896 2.739932 GCATCGTACAGCAACTCATCCT 60.740 50.000 0.00 0.00 0.00 3.24
5836 8897 2.941453 TCGTACAGCAACTCATCCTC 57.059 50.000 0.00 0.00 0.00 3.71
5838 8899 1.204704 CGTACAGCAACTCATCCTCCA 59.795 52.381 0.00 0.00 0.00 3.86
5839 8900 2.159043 CGTACAGCAACTCATCCTCCAT 60.159 50.000 0.00 0.00 0.00 3.41
5840 8901 2.414994 ACAGCAACTCATCCTCCATG 57.585 50.000 0.00 0.00 0.00 3.66
5841 8902 1.064906 ACAGCAACTCATCCTCCATGG 60.065 52.381 4.97 4.97 32.64 3.66
5843 8904 1.637553 AGCAACTCATCCTCCATGGTT 59.362 47.619 12.58 0.00 37.07 3.67
5844 8905 1.747355 GCAACTCATCCTCCATGGTTG 59.253 52.381 12.58 7.35 41.71 3.77
5845 8906 2.618816 GCAACTCATCCTCCATGGTTGA 60.619 50.000 12.58 9.98 41.53 3.18
5857 8918 2.995547 GGTTGAGTACCCCGCCAT 59.004 61.111 0.00 0.00 41.43 4.40
5858 8919 1.153229 GGTTGAGTACCCCGCCATC 60.153 63.158 0.00 0.00 41.43 3.51
5860 8921 1.306654 TTGAGTACCCCGCCATCCT 60.307 57.895 0.00 0.00 0.00 3.24
5863 8924 2.108362 GTACCCCGCCATCCTTCG 59.892 66.667 0.00 0.00 0.00 3.79
5864 8925 2.364579 TACCCCGCCATCCTTCGT 60.365 61.111 0.00 0.00 0.00 3.85
5865 8926 1.076118 TACCCCGCCATCCTTCGTA 60.076 57.895 0.00 0.00 0.00 3.43
5869 8930 1.392710 CCCGCCATCCTTCGTACTCT 61.393 60.000 0.00 0.00 0.00 3.24
5870 8931 1.315690 CCGCCATCCTTCGTACTCTA 58.684 55.000 0.00 0.00 0.00 2.43
5871 8932 1.267261 CCGCCATCCTTCGTACTCTAG 59.733 57.143 0.00 0.00 0.00 2.43
5873 8934 2.617308 CGCCATCCTTCGTACTCTAGAA 59.383 50.000 0.00 0.00 0.00 2.10
5875 8936 4.439700 CGCCATCCTTCGTACTCTAGAAAA 60.440 45.833 0.00 0.00 0.00 2.29
5876 8937 5.416947 GCCATCCTTCGTACTCTAGAAAAA 58.583 41.667 0.00 0.00 0.00 1.94
5877 8938 5.291371 GCCATCCTTCGTACTCTAGAAAAAC 59.709 44.000 0.00 0.00 0.00 2.43
5879 8940 6.872020 CCATCCTTCGTACTCTAGAAAAACAA 59.128 38.462 0.00 0.00 0.00 2.83
5880 8941 7.148623 CCATCCTTCGTACTCTAGAAAAACAAC 60.149 40.741 0.00 0.00 0.00 3.32
5881 8942 6.808829 TCCTTCGTACTCTAGAAAAACAACA 58.191 36.000 0.00 0.00 0.00 3.33
5882 8943 7.439381 TCCTTCGTACTCTAGAAAAACAACAT 58.561 34.615 0.00 0.00 0.00 2.71
5883 8944 7.384115 TCCTTCGTACTCTAGAAAAACAACATG 59.616 37.037 0.00 0.00 0.00 3.21
5884 8945 7.384115 CCTTCGTACTCTAGAAAAACAACATGA 59.616 37.037 0.00 0.00 0.00 3.07
5885 8946 7.633361 TCGTACTCTAGAAAAACAACATGAC 57.367 36.000 0.00 0.00 0.00 3.06
5886 8947 6.361481 TCGTACTCTAGAAAAACAACATGACG 59.639 38.462 0.00 0.00 0.00 4.35
5888 8949 6.920569 ACTCTAGAAAAACAACATGACGTT 57.079 33.333 0.00 0.00 38.83 3.99
5890 8951 5.969741 TCTAGAAAAACAACATGACGTTCG 58.030 37.500 0.00 0.00 34.86 3.95
5891 8952 4.868450 AGAAAAACAACATGACGTTCGA 57.132 36.364 0.00 0.00 34.86 3.71
5892 8953 5.224562 AGAAAAACAACATGACGTTCGAA 57.775 34.783 0.00 0.00 34.86 3.71
5893 8954 5.632959 AGAAAAACAACATGACGTTCGAAA 58.367 33.333 0.00 0.00 34.86 3.46
5894 8955 6.087522 AGAAAAACAACATGACGTTCGAAAA 58.912 32.000 0.00 0.00 34.86 2.29
5895 8956 6.750039 AGAAAAACAACATGACGTTCGAAAAT 59.250 30.769 0.00 0.00 34.86 1.82
5896 8957 7.911205 AGAAAAACAACATGACGTTCGAAAATA 59.089 29.630 0.00 0.00 34.86 1.40
5897 8958 7.972623 AAAACAACATGACGTTCGAAAATAA 57.027 28.000 0.00 0.00 34.86 1.40
5898 8959 7.603297 AAACAACATGACGTTCGAAAATAAG 57.397 32.000 0.00 0.00 34.86 1.73
5901 8962 5.204673 ACATGACGTTCGAAAATAAGCTC 57.795 39.130 0.00 0.00 0.00 4.09
5902 8963 4.688879 ACATGACGTTCGAAAATAAGCTCA 59.311 37.500 0.00 0.00 0.00 4.26
5904 8965 5.660629 TGACGTTCGAAAATAAGCTCAAA 57.339 34.783 0.00 0.00 0.00 2.69
5906 8967 5.030874 ACGTTCGAAAATAAGCTCAAAGG 57.969 39.130 0.00 0.00 0.00 3.11
5907 8968 3.846335 CGTTCGAAAATAAGCTCAAAGGC 59.154 43.478 0.00 0.00 0.00 4.35
5908 8969 4.612712 CGTTCGAAAATAAGCTCAAAGGCA 60.613 41.667 0.00 0.00 34.17 4.75
5910 8971 5.643379 TCGAAAATAAGCTCAAAGGCATT 57.357 34.783 0.00 0.00 34.17 3.56
5911 8972 6.024552 TCGAAAATAAGCTCAAAGGCATTT 57.975 33.333 0.00 0.00 34.17 2.32
5912 8973 5.863397 TCGAAAATAAGCTCAAAGGCATTTG 59.137 36.000 17.43 17.43 45.98 2.32
5922 8983 2.793278 AAGGCATTTGAACGAACACC 57.207 45.000 0.00 0.00 0.00 4.16
5923 8984 1.981256 AGGCATTTGAACGAACACCT 58.019 45.000 0.00 0.00 0.00 4.00
5925 8986 1.336755 GGCATTTGAACGAACACCTGT 59.663 47.619 0.00 0.00 0.00 4.00
5926 8987 2.604614 GGCATTTGAACGAACACCTGTC 60.605 50.000 0.00 0.00 0.00 3.51
5928 8989 1.292061 TTTGAACGAACACCTGTCGG 58.708 50.000 0.00 0.00 0.00 4.79
5930 8991 2.280592 AACGAACACCTGTCGGGC 60.281 61.111 0.00 0.00 39.10 6.13
5931 8992 2.981977 GAACGAACACCTGTCGGGCA 62.982 60.000 0.00 0.00 39.10 5.36
5932 8993 2.047274 CGAACACCTGTCGGGCAT 60.047 61.111 0.00 0.00 39.10 4.40
5934 8995 2.034066 AACACCTGTCGGGCATGG 59.966 61.111 0.00 0.00 39.10 3.66
5937 8998 3.249189 ACCTGTCGGGCATGGTGT 61.249 61.111 0.00 0.00 39.10 4.16
5938 8999 2.436646 CCTGTCGGGCATGGTGTC 60.437 66.667 0.00 0.00 0.00 3.67
5940 9001 4.386951 TGTCGGGCATGGTGTCGG 62.387 66.667 0.00 0.00 0.00 4.79
5948 9009 2.272146 ATGGTGTCGGCCATGGAC 59.728 61.111 18.40 13.35 46.63 4.02
5956 9017 4.124351 GGCCATGGACGTCGTCGA 62.124 66.667 18.40 15.72 40.62 4.20
5959 9020 1.081041 CCATGGACGTCGTCGACAA 60.081 57.895 24.13 7.72 40.62 3.18
5960 9021 1.071019 CCATGGACGTCGTCGACAAG 61.071 60.000 24.13 11.87 40.62 3.16
5962 9023 2.126580 GGACGTCGTCGACAAGGG 60.127 66.667 24.13 10.83 40.62 3.95
5963 9024 2.126580 GACGTCGTCGACAAGGGG 60.127 66.667 24.13 10.48 40.62 4.79
5964 9025 4.353437 ACGTCGTCGACAAGGGGC 62.353 66.667 24.13 0.00 40.62 5.80
5968 9029 4.796231 CGTCGACAAGGGGCGGAG 62.796 72.222 17.16 0.00 0.00 4.63
5969 9030 3.379445 GTCGACAAGGGGCGGAGA 61.379 66.667 11.55 0.00 0.00 3.71
5970 9031 3.068691 TCGACAAGGGGCGGAGAG 61.069 66.667 0.00 0.00 0.00 3.20
5971 9032 4.148825 CGACAAGGGGCGGAGAGG 62.149 72.222 0.00 0.00 0.00 3.69
5972 9033 2.683933 GACAAGGGGCGGAGAGGA 60.684 66.667 0.00 0.00 0.00 3.71
5973 9034 2.685380 ACAAGGGGCGGAGAGGAG 60.685 66.667 0.00 0.00 0.00 3.69
5974 9035 2.685380 CAAGGGGCGGAGAGGAGT 60.685 66.667 0.00 0.00 0.00 3.85
5975 9036 1.381327 CAAGGGGCGGAGAGGAGTA 60.381 63.158 0.00 0.00 0.00 2.59
5976 9037 1.381463 AAGGGGCGGAGAGGAGTAC 60.381 63.158 0.00 0.00 0.00 2.73
5986 9047 2.683933 AGGAGTACCTGGCCGTGG 60.684 66.667 12.48 12.48 45.92 4.94
5988 9049 2.577593 GAGTACCTGGCCGTGGAC 59.422 66.667 19.87 9.94 0.00 4.02
5991 9052 3.000819 TACCTGGCCGTGGACTGG 61.001 66.667 19.87 15.59 46.24 4.00
5993 9054 4.394712 CCTGGCCGTGGACTGGTC 62.395 72.222 9.43 0.00 37.45 4.02
6002 9063 2.203938 GGACTGGTCCTGGGTGGA 60.204 66.667 12.09 0.00 46.16 4.02
6024 9085 3.093278 GCCATCGTGAAAGGCGAG 58.907 61.111 1.66 0.00 41.83 5.03
6025 9086 3.093278 CCATCGTGAAAGGCGAGC 58.907 61.111 0.00 0.00 41.83 5.03
6026 9087 2.697425 CATCGTGAAAGGCGAGCG 59.303 61.111 0.00 0.00 41.83 5.03
6027 9088 2.509336 ATCGTGAAAGGCGAGCGG 60.509 61.111 0.00 0.00 41.83 5.52
6028 9089 4.735132 TCGTGAAAGGCGAGCGGG 62.735 66.667 0.00 0.00 34.11 6.13
6056 9117 4.463879 CTGTGGCGGCCAGAGAGG 62.464 72.222 35.51 14.34 46.28 3.69
6058 9119 3.075005 GTGGCGGCCAGAGAGGTA 61.075 66.667 24.58 0.00 40.61 3.08
6059 9120 2.759973 TGGCGGCCAGAGAGGTAG 60.760 66.667 19.77 0.00 40.61 3.18
6060 9121 2.442272 GGCGGCCAGAGAGGTAGA 60.442 66.667 15.62 0.00 40.61 2.59
6061 9122 2.058595 GGCGGCCAGAGAGGTAGAA 61.059 63.158 15.62 0.00 40.61 2.10
6062 9123 1.403687 GGCGGCCAGAGAGGTAGAAT 61.404 60.000 15.62 0.00 40.61 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.082463 GGCTAGCTAGCTAGAGTATTGGTG 60.082 50.000 42.59 21.54 46.56 4.17
59 69 0.037160 GAGCTAAACCCAAACCCCGA 59.963 55.000 0.00 0.00 0.00 5.14
60 70 0.963856 GGAGCTAAACCCAAACCCCG 60.964 60.000 0.00 0.00 0.00 5.73
74 108 2.760385 GCAGTAGGGGACGGAGCT 60.760 66.667 0.00 0.00 0.00 4.09
75 109 2.923634 TAGGCAGTAGGGGACGGAGC 62.924 65.000 0.00 0.00 0.00 4.70
76 110 0.178958 ATAGGCAGTAGGGGACGGAG 60.179 60.000 0.00 0.00 0.00 4.63
77 111 0.263765 AATAGGCAGTAGGGGACGGA 59.736 55.000 0.00 0.00 0.00 4.69
78 112 1.129058 AAATAGGCAGTAGGGGACGG 58.871 55.000 0.00 0.00 0.00 4.79
79 113 4.618920 AATAAATAGGCAGTAGGGGACG 57.381 45.455 0.00 0.00 0.00 4.79
80 114 5.691896 ACAAATAAATAGGCAGTAGGGGAC 58.308 41.667 0.00 0.00 0.00 4.46
81 115 5.163131 GGACAAATAAATAGGCAGTAGGGGA 60.163 44.000 0.00 0.00 0.00 4.81
82 116 5.070685 GGACAAATAAATAGGCAGTAGGGG 58.929 45.833 0.00 0.00 0.00 4.79
83 117 5.941788 AGGACAAATAAATAGGCAGTAGGG 58.058 41.667 0.00 0.00 0.00 3.53
84 118 5.998363 GGAGGACAAATAAATAGGCAGTAGG 59.002 44.000 0.00 0.00 0.00 3.18
85 119 6.708054 CAGGAGGACAAATAAATAGGCAGTAG 59.292 42.308 0.00 0.00 0.00 2.57
86 120 6.409234 CCAGGAGGACAAATAAATAGGCAGTA 60.409 42.308 0.00 0.00 36.89 2.74
87 121 5.440610 CAGGAGGACAAATAAATAGGCAGT 58.559 41.667 0.00 0.00 0.00 4.40
88 122 4.823989 CCAGGAGGACAAATAAATAGGCAG 59.176 45.833 0.00 0.00 36.89 4.85
158 192 2.210144 TACCAATGGGGGAGCAGTGC 62.210 60.000 7.13 7.13 42.91 4.40
159 193 0.552848 ATACCAATGGGGGAGCAGTG 59.447 55.000 3.55 0.00 42.91 3.66
160 194 0.552848 CATACCAATGGGGGAGCAGT 59.447 55.000 3.55 0.00 42.91 4.40
161 195 0.552848 ACATACCAATGGGGGAGCAG 59.447 55.000 3.55 0.00 42.91 4.24
162 196 0.550914 GACATACCAATGGGGGAGCA 59.449 55.000 3.55 0.00 42.91 4.26
163 197 0.846693 AGACATACCAATGGGGGAGC 59.153 55.000 3.55 0.00 42.91 4.70
164 198 1.846439 ACAGACATACCAATGGGGGAG 59.154 52.381 3.55 0.00 42.91 4.30
165 199 1.843851 GACAGACATACCAATGGGGGA 59.156 52.381 3.55 0.00 42.91 4.81
166 200 1.133792 GGACAGACATACCAATGGGGG 60.134 57.143 3.55 0.00 42.91 5.40
218 263 0.946221 CACACCTGAGCTCACGGAAC 60.946 60.000 28.29 0.00 0.00 3.62
219 264 1.367471 CACACCTGAGCTCACGGAA 59.633 57.895 28.29 5.06 0.00 4.30
220 265 3.051210 CACACCTGAGCTCACGGA 58.949 61.111 28.29 5.41 0.00 4.69
226 271 0.466922 AGCAAAAGCACACCTGAGCT 60.467 50.000 0.00 0.00 43.66 4.09
312 379 2.671619 CGGGGAAAAAGCAGCGGA 60.672 61.111 0.00 0.00 0.00 5.54
326 393 3.068064 GTGCATGAAACCCCCGGG 61.068 66.667 15.80 15.80 42.03 5.73
327 394 1.595093 GAAGTGCATGAAACCCCCGG 61.595 60.000 0.00 0.00 0.00 5.73
386 453 3.423154 GCGTCAGCAAGAACCCGG 61.423 66.667 0.00 0.00 44.35 5.73
493 561 0.472471 ACTTTTCCAACTGGCTCGGA 59.528 50.000 0.00 0.00 34.44 4.55
495 563 3.564225 ACTAAACTTTTCCAACTGGCTCG 59.436 43.478 0.00 0.00 34.44 5.03
505 573 5.789521 AGAGAGCTCTCACTAAACTTTTCC 58.210 41.667 38.20 13.00 45.21 3.13
529 597 3.004734 ACGCTTGACCAAAAATCTCCTTG 59.995 43.478 0.00 0.00 0.00 3.61
549 617 4.276431 TCCCAAGCTAACCAAAAACTTACG 59.724 41.667 0.00 0.00 0.00 3.18
550 618 5.777850 TCCCAAGCTAACCAAAAACTTAC 57.222 39.130 0.00 0.00 0.00 2.34
551 619 6.311735 AGATCCCAAGCTAACCAAAAACTTA 58.688 36.000 0.00 0.00 0.00 2.24
567 635 1.371467 TTCCTCAGGCAAGATCCCAA 58.629 50.000 0.00 0.00 0.00 4.12
584 652 3.058914 CAGACAAAACCCGAGACACATTC 60.059 47.826 0.00 0.00 0.00 2.67
623 693 9.882996 TGATTATTTTTAGATCATTGATGCGAC 57.117 29.630 3.32 0.00 0.00 5.19
644 715 2.330231 GCAAGCGTGTTTGCTGATTA 57.670 45.000 13.25 0.00 46.60 1.75
651 722 2.193306 AACTTGAGCAAGCGTGTTTG 57.807 45.000 9.99 0.00 41.99 2.93
656 727 1.360192 GGCAAACTTGAGCAAGCGT 59.640 52.632 9.99 0.00 41.99 5.07
683 756 7.810282 CGTTCTCTGAAGATGTTTCTAAAGAGA 59.190 37.037 10.94 10.94 42.84 3.10
684 757 7.810282 TCGTTCTCTGAAGATGTTTCTAAAGAG 59.190 37.037 7.85 7.85 40.14 2.85
685 758 7.595502 GTCGTTCTCTGAAGATGTTTCTAAAGA 59.404 37.037 0.00 0.00 0.00 2.52
686 759 7.596995 AGTCGTTCTCTGAAGATGTTTCTAAAG 59.403 37.037 0.00 0.00 0.00 1.85
688 761 6.863645 CAGTCGTTCTCTGAAGATGTTTCTAA 59.136 38.462 0.00 0.00 35.20 2.10
778 851 6.090898 ACAGATCGAAGAAATCAAAGTAACGG 59.909 38.462 0.00 0.00 43.58 4.44
814 887 8.880991 ACTACTCAGAGATTTTACCAAGACTA 57.119 34.615 3.79 0.00 0.00 2.59
827 900 6.098124 CCTGGAAATCAAGACTACTCAGAGAT 59.902 42.308 3.79 0.00 0.00 2.75
828 901 5.420421 CCTGGAAATCAAGACTACTCAGAGA 59.580 44.000 3.79 0.00 0.00 3.10
871 954 6.932356 ATCAACACTTCATATTACTGCAGG 57.068 37.500 19.93 0.00 0.00 4.85
911 996 0.675633 CTTGCCCAAGAACCACAAGG 59.324 55.000 1.83 0.00 40.79 3.61
938 1026 1.558756 AGTCAGCCTTGGAGAATCAGG 59.441 52.381 0.00 0.00 36.25 3.86
962 1050 5.535753 ACTGCAAAGCAAGGTAAAGATTT 57.464 34.783 0.00 0.00 38.41 2.17
963 1051 5.535753 AACTGCAAAGCAAGGTAAAGATT 57.464 34.783 0.00 0.00 38.41 2.40
978 1066 1.405105 GCTCAGGACACAAAACTGCAA 59.595 47.619 0.00 0.00 32.42 4.08
1156 1250 2.869233 AACTTGCACCATGTCAACAC 57.131 45.000 0.00 0.00 0.00 3.32
1203 1297 7.828717 TCACCTTCTAATGCTGATTTTGATGTA 59.171 33.333 0.00 0.00 0.00 2.29
1250 1344 6.969993 AATTCCTCTAGTCCTGACTATGAC 57.030 41.667 7.44 0.00 42.44 3.06
1258 1352 5.620738 TGATCCAAATTCCTCTAGTCCTG 57.379 43.478 0.00 0.00 0.00 3.86
1260 1354 5.934781 ACATGATCCAAATTCCTCTAGTCC 58.065 41.667 0.00 0.00 0.00 3.85
1302 1405 9.196139 AGATTATACTGAAGTCTTGTCTAGCTT 57.804 33.333 0.00 0.00 0.00 3.74
1307 1410 7.726033 ACCAGATTATACTGAAGTCTTGTCT 57.274 36.000 0.00 0.00 39.94 3.41
1308 1411 8.904834 TCTACCAGATTATACTGAAGTCTTGTC 58.095 37.037 0.00 0.00 39.94 3.18
1309 1412 8.688151 GTCTACCAGATTATACTGAAGTCTTGT 58.312 37.037 0.00 0.00 39.94 3.16
1310 1413 8.687242 TGTCTACCAGATTATACTGAAGTCTTG 58.313 37.037 0.00 0.00 39.94 3.02
1311 1414 8.824756 TGTCTACCAGATTATACTGAAGTCTT 57.175 34.615 0.00 0.00 39.94 3.01
1350 1458 4.551702 TTTCCTACAGCTGAACTATGCA 57.448 40.909 23.35 0.00 0.00 3.96
1351 1459 5.880054 TTTTTCCTACAGCTGAACTATGC 57.120 39.130 23.35 0.00 0.00 3.14
1418 1529 0.744414 CCCTGGTGAACATACCTGCG 60.744 60.000 0.00 0.00 41.43 5.18
1468 1579 1.209128 ACAGTTCGTCAAACTCAGCG 58.791 50.000 0.00 0.00 45.28 5.18
1550 1661 1.795768 TTGAGCAGTTAAGTCGCAGG 58.204 50.000 7.25 0.00 0.00 4.85
1552 1663 2.095768 GCAATTGAGCAGTTAAGTCGCA 60.096 45.455 10.34 0.00 0.00 5.10
1560 1676 0.828762 TGGCAGGCAATTGAGCAGTT 60.829 50.000 10.34 0.00 35.83 3.16
1561 1677 1.228644 TGGCAGGCAATTGAGCAGT 60.229 52.632 10.34 0.00 35.83 4.40
1570 1686 4.888326 ATAAAATTCAACTGGCAGGCAA 57.112 36.364 20.34 8.42 0.00 4.52
1707 1834 0.676184 TCAGCTCTTCAACAGCGAGT 59.324 50.000 0.00 0.00 42.14 4.18
1764 1891 1.833630 CCTGGGACTTACTGCTCATCA 59.166 52.381 0.00 0.00 0.00 3.07
1779 1906 4.860022 ACTGGTTAAGATTTCATCCTGGG 58.140 43.478 0.00 0.00 0.00 4.45
1780 1907 5.711976 ACAACTGGTTAAGATTTCATCCTGG 59.288 40.000 0.00 0.00 0.00 4.45
1796 1923 7.724061 AGAATGTAAAATTCACCTACAACTGGT 59.276 33.333 1.30 0.00 38.53 4.00
2066 2193 5.556915 TCAAGAAGATTGGTTCCACGTATT 58.443 37.500 0.00 0.00 0.00 1.89
2111 2247 2.939103 GCGGTTCTTTCTAGCATGTCAT 59.061 45.455 0.00 0.00 0.00 3.06
2118 2254 3.184541 TCATTACGCGGTTCTTTCTAGC 58.815 45.455 12.47 0.00 0.00 3.42
2122 2258 4.965062 TCAAATCATTACGCGGTTCTTTC 58.035 39.130 12.47 0.00 0.00 2.62
2224 2360 0.325671 TCCTAAGGGCTGACTGGAGG 60.326 60.000 0.00 0.00 0.00 4.30
2324 2460 2.348411 CCTTGGCTACATGGTAAGGG 57.652 55.000 0.00 0.00 37.20 3.95
2345 2481 6.261118 CAGCTATTCCATTTGCAGTACTTTC 58.739 40.000 0.00 0.00 0.00 2.62
2349 2485 3.629398 AGCAGCTATTCCATTTGCAGTAC 59.371 43.478 0.00 0.00 37.24 2.73
2383 2520 1.321474 CAAGCTCTTGGAACCTGCAA 58.679 50.000 1.79 0.00 36.95 4.08
2443 2580 3.159213 AGAAGCAAATGGATGGTGTCA 57.841 42.857 0.00 0.00 0.00 3.58
2551 2688 4.858850 TGGATTGAGCAAAGTATCCATGT 58.141 39.130 0.00 0.00 41.10 3.21
2618 2755 9.289782 AGTAGTAGCTGACAGAAATTTGATTTT 57.710 29.630 6.65 0.00 31.47 1.82
2634 2771 6.039616 CCAGAAAGCTTAGAAGTAGTAGCTG 58.960 44.000 0.00 0.00 42.79 4.24
2640 2777 6.692486 TCAGAACCAGAAAGCTTAGAAGTAG 58.308 40.000 0.00 0.00 0.00 2.57
2643 2780 6.878389 AGATTCAGAACCAGAAAGCTTAGAAG 59.122 38.462 0.00 0.00 0.00 2.85
2647 2784 4.697352 GCAGATTCAGAACCAGAAAGCTTA 59.303 41.667 0.00 0.00 0.00 3.09
2649 2786 3.080319 GCAGATTCAGAACCAGAAAGCT 58.920 45.455 0.00 0.00 0.00 3.74
2703 2840 0.035056 CCAAAGCCCGGACTTGATCT 60.035 55.000 2.86 0.00 0.00 2.75
2751 2888 2.644798 AGGAGTTATGTCAAGGCCTTGT 59.355 45.455 37.97 25.05 41.16 3.16
2763 2900 9.650539 CATACAATGAGGATCTTAGGAGTTATG 57.349 37.037 0.00 0.00 34.92 1.90
2794 2931 5.718724 TGCAACATCCAACATTGTTATGA 57.281 34.783 15.79 10.17 34.42 2.15
2795 2932 6.971527 ATTGCAACATCCAACATTGTTATG 57.028 33.333 0.00 6.27 34.42 1.90
2834 2971 2.034558 GCACATTTACCAACAGCACACT 59.965 45.455 0.00 0.00 0.00 3.55
2837 2974 1.336795 GGGCACATTTACCAACAGCAC 60.337 52.381 0.00 0.00 0.00 4.40
2838 2975 0.965439 GGGCACATTTACCAACAGCA 59.035 50.000 0.00 0.00 0.00 4.41
2840 2977 1.272212 GGTGGGCACATTTACCAACAG 59.728 52.381 0.00 0.00 41.61 3.16
2841 2978 1.333177 GGTGGGCACATTTACCAACA 58.667 50.000 0.00 0.00 41.61 3.33
2842 2979 0.606096 GGGTGGGCACATTTACCAAC 59.394 55.000 0.00 0.00 41.26 3.77
2869 3018 3.091545 CAACCTGGTGACCTGCATAAAT 58.908 45.455 2.11 0.00 0.00 1.40
2872 3021 1.064003 ACAACCTGGTGACCTGCATA 58.936 50.000 2.11 0.00 0.00 3.14
2929 3078 3.618997 GCTCGGTTCCAATAACCTTCTCA 60.619 47.826 5.46 0.00 38.15 3.27
2938 3087 1.621317 TCAGTGTGCTCGGTTCCAATA 59.379 47.619 0.00 0.00 0.00 1.90
2947 3096 1.354040 GGAGAATGTCAGTGTGCTCG 58.646 55.000 0.00 0.00 0.00 5.03
3249 3399 1.261354 GTACAACAAAACCGACCGACC 59.739 52.381 0.00 0.00 0.00 4.79
3250 3400 2.033492 CAGTACAACAAAACCGACCGAC 60.033 50.000 0.00 0.00 0.00 4.79
3251 3401 2.203401 CAGTACAACAAAACCGACCGA 58.797 47.619 0.00 0.00 0.00 4.69
3252 3402 1.935199 ACAGTACAACAAAACCGACCG 59.065 47.619 0.00 0.00 0.00 4.79
3541 4409 4.270325 GCATCAGATAAACGTTCTGGTACC 59.730 45.833 14.18 4.43 40.80 3.34
3694 4562 0.107800 CAGTCATGTCTGCTCCAGGG 60.108 60.000 7.03 0.00 31.51 4.45
3724 4592 3.612955 GCCTCTTGTCAGTCTCAGTGTAC 60.613 52.174 0.00 0.00 0.00 2.90
3848 4716 5.235831 GTCACTACTGTAAACCAGGTGAAAC 59.764 44.000 0.00 0.00 46.06 2.78
3871 4739 4.160252 AGCAAGTGTTTGGAACATTGAAGT 59.840 37.500 14.39 0.00 44.35 3.01
3882 4750 4.044426 GCAGAAAGTAAGCAAGTGTTTGG 58.956 43.478 0.00 0.00 34.79 3.28
3883 4751 4.736793 CAGCAGAAAGTAAGCAAGTGTTTG 59.263 41.667 0.00 0.00 37.36 2.93
3884 4752 4.399303 ACAGCAGAAAGTAAGCAAGTGTTT 59.601 37.500 0.00 0.00 0.00 2.83
3889 4757 4.697352 ACCATACAGCAGAAAGTAAGCAAG 59.303 41.667 0.00 0.00 0.00 4.01
3897 4765 4.556104 GCATGCATACCATACAGCAGAAAG 60.556 45.833 14.21 0.00 40.71 2.62
3898 4766 3.316029 GCATGCATACCATACAGCAGAAA 59.684 43.478 14.21 0.00 40.71 2.52
3913 4781 2.419574 GCTTGAATCAAAGGGCATGCAT 60.420 45.455 21.36 4.13 33.30 3.96
3915 4783 1.066716 TGCTTGAATCAAAGGGCATGC 60.067 47.619 9.90 9.90 33.57 4.06
3921 4789 7.910441 AAAATGGTTATGCTTGAATCAAAGG 57.090 32.000 0.00 0.00 0.00 3.11
3963 4831 3.442273 TGTTCCTGTCCTTCAACACAAAC 59.558 43.478 0.00 0.00 0.00 2.93
4143 5011 4.156922 AGACTGTACATCCTCTTGAACTCG 59.843 45.833 0.00 0.00 0.00 4.18
4209 5082 0.716108 GAACACGGTTCATCTGAGCG 59.284 55.000 10.67 0.00 43.07 5.03
4336 5214 1.035139 CCAGTGCAAACTCAAGGCTT 58.965 50.000 0.00 0.00 0.00 4.35
4401 5279 2.227388 CTCAATGACAGTCAGGCCAAAC 59.773 50.000 9.64 1.66 0.00 2.93
4446 5442 2.398554 ACCGTGGCATGTCGCAATC 61.399 57.895 12.02 0.00 45.17 2.67
4647 5650 4.777896 ACTTAGAACTATCTGGCAGGACAA 59.222 41.667 15.73 0.00 37.10 3.18
4648 5651 4.353777 ACTTAGAACTATCTGGCAGGACA 58.646 43.478 15.73 0.00 37.10 4.02
4792 5967 1.587043 CGAGTCTCACGCCTCTCCAA 61.587 60.000 0.00 0.00 0.00 3.53
4861 6036 0.457851 CCCTCGGACAGTCAGATGAC 59.542 60.000 3.65 4.77 45.08 3.06
4862 6037 1.323271 GCCCTCGGACAGTCAGATGA 61.323 60.000 3.65 0.00 0.00 2.92
4863 6038 1.142748 GCCCTCGGACAGTCAGATG 59.857 63.158 3.65 1.60 0.00 2.90
4864 6039 0.904865 TTGCCCTCGGACAGTCAGAT 60.905 55.000 3.65 0.00 0.00 2.90
4890 6074 2.549064 TGTCATGAAGTGGACACTGG 57.451 50.000 5.63 0.00 41.58 4.00
4906 6090 6.901887 CGCATAAATCATAAGTGACAAGTGTC 59.098 38.462 4.43 4.43 44.97 3.67
4913 6097 6.691388 GGGAAAACGCATAAATCATAAGTGAC 59.309 38.462 0.00 0.00 37.14 3.67
4935 6119 0.914644 CAGCCTGGATTCAAGAGGGA 59.085 55.000 0.00 0.00 0.00 4.20
4936 6120 0.750911 GCAGCCTGGATTCAAGAGGG 60.751 60.000 0.00 0.00 0.00 4.30
4937 6121 0.255318 AGCAGCCTGGATTCAAGAGG 59.745 55.000 0.00 0.00 0.00 3.69
5110 6304 0.810648 TGCCGGAGACATCAAATTGC 59.189 50.000 5.05 0.00 0.00 3.56
5111 6305 1.811965 TGTGCCGGAGACATCAAATTG 59.188 47.619 5.05 0.00 0.00 2.32
5183 6377 2.083774 CAGGCGTTTATTCAGAGGCAA 58.916 47.619 0.00 0.00 0.00 4.52
5184 6378 1.737838 CAGGCGTTTATTCAGAGGCA 58.262 50.000 0.00 0.00 0.00 4.75
5185 6379 0.378610 GCAGGCGTTTATTCAGAGGC 59.621 55.000 0.00 0.00 0.00 4.70
5186 6380 1.017387 GGCAGGCGTTTATTCAGAGG 58.983 55.000 0.00 0.00 0.00 3.69
5187 6381 1.017387 GGGCAGGCGTTTATTCAGAG 58.983 55.000 0.00 0.00 0.00 3.35
5188 6382 0.326595 TGGGCAGGCGTTTATTCAGA 59.673 50.000 0.00 0.00 0.00 3.27
5189 6383 1.392589 ATGGGCAGGCGTTTATTCAG 58.607 50.000 0.00 0.00 0.00 3.02
5190 6384 2.719531 TATGGGCAGGCGTTTATTCA 57.280 45.000 0.00 0.00 0.00 2.57
5263 6483 1.243902 TTCATGACAAAAGGGGCGAC 58.756 50.000 0.00 0.00 0.00 5.19
5266 6486 3.588955 GTTCATTCATGACAAAAGGGGC 58.411 45.455 0.00 0.00 36.36 5.80
5291 6511 1.523711 CACACAACAGTGAGGCCGT 60.524 57.895 0.00 0.00 42.05 5.68
5292 6512 2.896801 GCACACAACAGTGAGGCCG 61.897 63.158 0.00 0.00 42.05 6.13
5293 6513 1.526917 AGCACACAACAGTGAGGCC 60.527 57.895 0.00 0.00 42.05 5.19
5294 6514 1.650912 CAGCACACAACAGTGAGGC 59.349 57.895 0.00 5.88 42.05 4.70
5295 6515 1.096967 TGCAGCACACAACAGTGAGG 61.097 55.000 0.00 0.00 42.05 3.86
5296 6516 2.396700 TGCAGCACACAACAGTGAG 58.603 52.632 0.00 0.00 42.05 3.51
5297 6517 4.633769 TGCAGCACACAACAGTGA 57.366 50.000 0.00 0.00 42.05 3.41
5331 6577 2.284190 GCCAAGAGGTGCACTATTCTC 58.716 52.381 17.98 14.27 37.19 2.87
5343 6589 1.882623 GGTTCTGTCTTTGCCAAGAGG 59.117 52.381 0.00 0.00 39.86 3.69
5344 6590 2.575532 TGGTTCTGTCTTTGCCAAGAG 58.424 47.619 0.00 0.00 39.86 2.85
5354 6600 2.665165 TGTTGGCATTTGGTTCTGTCT 58.335 42.857 0.00 0.00 0.00 3.41
5359 6605 4.685924 CATAGGATGTTGGCATTTGGTTC 58.314 43.478 0.00 0.00 35.07 3.62
5406 7391 0.723414 CGACTTGTGTGCTATGCCAG 59.277 55.000 0.00 0.00 0.00 4.85
5413 7398 4.258702 ACTTCTAATCGACTTGTGTGCT 57.741 40.909 0.00 0.00 0.00 4.40
5415 7400 4.090066 CGGAACTTCTAATCGACTTGTGTG 59.910 45.833 0.00 0.00 0.00 3.82
5416 7401 4.235360 CGGAACTTCTAATCGACTTGTGT 58.765 43.478 0.00 0.00 0.00 3.72
5421 7410 3.257624 ACCAACGGAACTTCTAATCGACT 59.742 43.478 0.00 0.00 0.00 4.18
5422 7411 3.582780 ACCAACGGAACTTCTAATCGAC 58.417 45.455 0.00 0.00 0.00 4.20
5423 7412 3.947910 ACCAACGGAACTTCTAATCGA 57.052 42.857 0.00 0.00 0.00 3.59
5424 7413 5.501897 GCATTACCAACGGAACTTCTAATCG 60.502 44.000 0.00 0.00 0.00 3.34
5425 7414 5.353123 TGCATTACCAACGGAACTTCTAATC 59.647 40.000 0.00 0.00 0.00 1.75
5426 7415 5.123344 GTGCATTACCAACGGAACTTCTAAT 59.877 40.000 0.00 0.00 0.00 1.73
5428 7417 3.998341 GTGCATTACCAACGGAACTTCTA 59.002 43.478 0.00 0.00 0.00 2.10
5429 7418 2.812011 GTGCATTACCAACGGAACTTCT 59.188 45.455 0.00 0.00 0.00 2.85
5430 7419 2.812011 AGTGCATTACCAACGGAACTTC 59.188 45.455 0.00 0.00 0.00 3.01
5433 7422 2.147958 TCAGTGCATTACCAACGGAAC 58.852 47.619 0.00 0.00 0.00 3.62
5452 7441 3.495001 GCCGTCAGATTTTACTGGCTATC 59.505 47.826 0.00 0.00 39.93 2.08
5459 7448 2.167693 TCCATCGCCGTCAGATTTTACT 59.832 45.455 0.00 0.00 0.00 2.24
5461 7450 2.429250 TCTCCATCGCCGTCAGATTTTA 59.571 45.455 0.00 0.00 0.00 1.52
5471 7460 1.301244 CCTTCCATCTCCATCGCCG 60.301 63.158 0.00 0.00 0.00 6.46
5486 7476 2.365617 TCTTCAGACTTCAGCGTTCCTT 59.634 45.455 0.00 0.00 0.00 3.36
5491 7481 2.235016 ACTCTCTTCAGACTTCAGCGT 58.765 47.619 0.00 0.00 0.00 5.07
5494 7484 7.601856 ACTGATTAACTCTCTTCAGACTTCAG 58.398 38.462 8.19 0.00 38.25 3.02
5495 7485 7.531857 ACTGATTAACTCTCTTCAGACTTCA 57.468 36.000 8.19 0.00 38.25 3.02
5496 7486 9.349145 GTAACTGATTAACTCTCTTCAGACTTC 57.651 37.037 8.19 0.00 38.25 3.01
5497 7487 8.308207 GGTAACTGATTAACTCTCTTCAGACTT 58.692 37.037 8.19 0.00 38.25 3.01
5498 7488 7.832769 GGTAACTGATTAACTCTCTTCAGACT 58.167 38.462 8.19 0.00 38.25 3.24
5675 7714 3.325201 ATTTCCTCCGTCCGTGGCC 62.325 63.158 0.00 0.00 0.00 5.36
5676 7715 2.106683 CATTTCCTCCGTCCGTGGC 61.107 63.158 0.00 0.00 0.00 5.01
5677 7716 0.036765 TTCATTTCCTCCGTCCGTGG 60.037 55.000 0.00 0.00 0.00 4.94
5678 7717 1.665679 CATTCATTTCCTCCGTCCGTG 59.334 52.381 0.00 0.00 0.00 4.94
5679 7718 1.553248 TCATTCATTTCCTCCGTCCGT 59.447 47.619 0.00 0.00 0.00 4.69
5681 7720 3.873910 TCTTCATTCATTTCCTCCGTCC 58.126 45.455 0.00 0.00 0.00 4.79
5682 7721 3.311048 GCTCTTCATTCATTTCCTCCGTC 59.689 47.826 0.00 0.00 0.00 4.79
5683 7722 3.274288 GCTCTTCATTCATTTCCTCCGT 58.726 45.455 0.00 0.00 0.00 4.69
5684 7723 2.615912 GGCTCTTCATTCATTTCCTCCG 59.384 50.000 0.00 0.00 0.00 4.63
5685 7724 2.954989 GGGCTCTTCATTCATTTCCTCC 59.045 50.000 0.00 0.00 0.00 4.30
5686 7725 2.954989 GGGGCTCTTCATTCATTTCCTC 59.045 50.000 0.00 0.00 0.00 3.71
5687 7726 2.358615 GGGGGCTCTTCATTCATTTCCT 60.359 50.000 0.00 0.00 0.00 3.36
5688 7727 2.034878 GGGGGCTCTTCATTCATTTCC 58.965 52.381 0.00 0.00 0.00 3.13
5689 7728 3.023939 AGGGGGCTCTTCATTCATTTC 57.976 47.619 0.00 0.00 0.00 2.17
5690 7729 3.012161 AGAAGGGGGCTCTTCATTCATTT 59.988 43.478 18.11 0.00 44.01 2.32
5691 7730 2.584498 AGAAGGGGGCTCTTCATTCATT 59.416 45.455 18.11 0.53 44.01 2.57
5692 7731 2.091994 CAGAAGGGGGCTCTTCATTCAT 60.092 50.000 18.11 1.07 44.01 2.57
5693 7732 1.283029 CAGAAGGGGGCTCTTCATTCA 59.717 52.381 18.11 0.00 44.01 2.57
5694 7733 1.283321 ACAGAAGGGGGCTCTTCATTC 59.717 52.381 18.11 4.61 44.01 2.67
5695 7734 1.376649 ACAGAAGGGGGCTCTTCATT 58.623 50.000 18.11 6.40 44.01 2.57
5696 7735 1.283321 GAACAGAAGGGGGCTCTTCAT 59.717 52.381 18.11 7.56 44.01 2.57
5697 7736 0.693049 GAACAGAAGGGGGCTCTTCA 59.307 55.000 18.11 0.00 44.01 3.02
5698 7737 0.988063 AGAACAGAAGGGGGCTCTTC 59.012 55.000 11.32 11.32 42.43 2.87
5699 7738 0.695347 CAGAACAGAAGGGGGCTCTT 59.305 55.000 0.00 0.00 0.00 2.85
5700 7739 0.474660 ACAGAACAGAAGGGGGCTCT 60.475 55.000 0.00 0.00 0.00 4.09
5701 7740 0.402121 AACAGAACAGAAGGGGGCTC 59.598 55.000 0.00 0.00 0.00 4.70
5702 7741 0.402121 GAACAGAACAGAAGGGGGCT 59.598 55.000 0.00 0.00 0.00 5.19
5703 7742 0.110486 TGAACAGAACAGAAGGGGGC 59.890 55.000 0.00 0.00 0.00 5.80
5704 7743 1.545651 GGTGAACAGAACAGAAGGGGG 60.546 57.143 0.00 0.00 0.00 5.40
5705 7744 1.878102 CGGTGAACAGAACAGAAGGGG 60.878 57.143 0.00 0.00 0.00 4.79
5707 7746 2.135933 GACGGTGAACAGAACAGAAGG 58.864 52.381 0.00 0.00 0.00 3.46
5708 7747 2.821546 TGACGGTGAACAGAACAGAAG 58.178 47.619 0.00 0.00 0.00 2.85
5709 7748 2.933906 GTTGACGGTGAACAGAACAGAA 59.066 45.455 5.57 0.00 0.00 3.02
5710 7749 2.093921 TGTTGACGGTGAACAGAACAGA 60.094 45.455 9.12 0.00 0.00 3.41
5714 8775 5.587043 AGTTTATTGTTGACGGTGAACAGAA 59.413 36.000 12.69 8.96 34.85 3.02
5716 8777 5.418310 AGTTTATTGTTGACGGTGAACAG 57.582 39.130 12.69 0.00 34.85 3.16
5727 8788 8.711457 CCTCCTTGCAAAATAAGTTTATTGTTG 58.289 33.333 0.00 6.55 33.85 3.33
5730 8791 9.487790 TTTCCTCCTTGCAAAATAAGTTTATTG 57.512 29.630 0.00 0.00 33.85 1.90
5732 8793 9.657419 CATTTCCTCCTTGCAAAATAAGTTTAT 57.343 29.630 0.00 0.00 0.00 1.40
5733 8794 8.865090 TCATTTCCTCCTTGCAAAATAAGTTTA 58.135 29.630 0.00 0.00 0.00 2.01
5734 8795 7.734942 TCATTTCCTCCTTGCAAAATAAGTTT 58.265 30.769 0.00 0.00 0.00 2.66
5735 8796 7.301868 TCATTTCCTCCTTGCAAAATAAGTT 57.698 32.000 0.00 0.00 0.00 2.66
5736 8797 6.916360 TCATTTCCTCCTTGCAAAATAAGT 57.084 33.333 0.00 0.00 0.00 2.24
5737 8798 8.036575 TCATTCATTTCCTCCTTGCAAAATAAG 58.963 33.333 0.00 0.00 0.00 1.73
5740 8801 6.363167 TCATTCATTTCCTCCTTGCAAAAT 57.637 33.333 0.00 0.00 0.00 1.82
5753 8814 3.023939 AGGGGGCTCTTCATTCATTTC 57.976 47.619 0.00 0.00 0.00 2.17
5759 8820 1.376649 ACAGAAGGGGGCTCTTCATT 58.623 50.000 18.11 6.40 44.01 2.57
5761 8822 0.693049 GAACAGAAGGGGGCTCTTCA 59.307 55.000 18.11 0.00 44.01 3.02
5763 8824 0.476611 AGGAACAGAAGGGGGCTCTT 60.477 55.000 0.00 0.00 0.00 2.85
5764 8825 1.162085 AGGAACAGAAGGGGGCTCT 59.838 57.895 0.00 0.00 0.00 4.09
5766 8827 2.911926 GCAGGAACAGAAGGGGGCT 61.912 63.158 0.00 0.00 0.00 5.19
5767 8828 2.361737 GCAGGAACAGAAGGGGGC 60.362 66.667 0.00 0.00 0.00 5.80
5768 8829 0.682209 CATGCAGGAACAGAAGGGGG 60.682 60.000 0.00 0.00 0.00 5.40
5770 8831 2.787473 TACATGCAGGAACAGAAGGG 57.213 50.000 4.84 0.00 0.00 3.95
5771 8832 5.393461 GGATTTTACATGCAGGAACAGAAGG 60.393 44.000 4.84 0.00 0.00 3.46
5772 8833 5.183713 TGGATTTTACATGCAGGAACAGAAG 59.816 40.000 4.84 0.00 0.00 2.85
5773 8834 5.048083 GTGGATTTTACATGCAGGAACAGAA 60.048 40.000 4.84 0.00 0.00 3.02
5774 8835 4.458989 GTGGATTTTACATGCAGGAACAGA 59.541 41.667 4.84 0.00 0.00 3.41
5775 8836 4.672542 CGTGGATTTTACATGCAGGAACAG 60.673 45.833 4.84 0.00 0.00 3.16
5776 8837 3.190327 CGTGGATTTTACATGCAGGAACA 59.810 43.478 4.84 0.00 0.00 3.18
5777 8838 3.427503 CCGTGGATTTTACATGCAGGAAC 60.428 47.826 4.84 0.00 0.00 3.62
5778 8839 2.752354 CCGTGGATTTTACATGCAGGAA 59.248 45.455 4.84 0.00 0.00 3.36
5779 8840 2.026729 TCCGTGGATTTTACATGCAGGA 60.027 45.455 4.84 0.00 0.00 3.86
5782 8843 3.558006 CGTATCCGTGGATTTTACATGCA 59.442 43.478 6.72 0.00 36.17 3.96
5785 8846 3.135994 GCCGTATCCGTGGATTTTACAT 58.864 45.455 6.72 0.00 36.17 2.29
5786 8847 2.553086 GCCGTATCCGTGGATTTTACA 58.447 47.619 6.72 0.00 36.17 2.41
5787 8848 1.869132 GGCCGTATCCGTGGATTTTAC 59.131 52.381 6.72 0.00 36.17 2.01
5788 8849 1.485480 TGGCCGTATCCGTGGATTTTA 59.515 47.619 6.72 0.00 36.17 1.52
5789 8850 0.253610 TGGCCGTATCCGTGGATTTT 59.746 50.000 6.72 0.00 36.17 1.82
5790 8851 0.253610 TTGGCCGTATCCGTGGATTT 59.746 50.000 6.72 0.00 36.17 2.17
5792 8853 0.034896 GATTGGCCGTATCCGTGGAT 59.965 55.000 6.63 6.63 38.54 3.41
5793 8854 1.331399 TGATTGGCCGTATCCGTGGA 61.331 55.000 13.42 0.00 0.00 4.02
5794 8855 0.250295 ATGATTGGCCGTATCCGTGG 60.250 55.000 13.42 0.00 0.00 4.94
5795 8856 0.867746 CATGATTGGCCGTATCCGTG 59.132 55.000 13.42 9.39 0.00 4.94
5797 8858 0.884259 TGCATGATTGGCCGTATCCG 60.884 55.000 13.42 7.29 0.00 4.18
5799 8860 1.129251 CGATGCATGATTGGCCGTATC 59.871 52.381 2.46 10.03 0.00 2.24
5800 8861 1.159285 CGATGCATGATTGGCCGTAT 58.841 50.000 2.46 0.00 0.00 3.06
5801 8862 0.179059 ACGATGCATGATTGGCCGTA 60.179 50.000 2.46 0.00 29.61 4.02
5804 8865 1.265095 CTGTACGATGCATGATTGGCC 59.735 52.381 2.46 0.00 0.00 5.36
5805 8866 1.334419 GCTGTACGATGCATGATTGGC 60.334 52.381 2.46 0.00 0.00 4.52
5809 8870 2.868583 GAGTTGCTGTACGATGCATGAT 59.131 45.455 2.46 0.00 39.07 2.45
5810 8871 2.270923 GAGTTGCTGTACGATGCATGA 58.729 47.619 2.46 0.00 39.07 3.07
5811 8872 2.001872 TGAGTTGCTGTACGATGCATG 58.998 47.619 2.46 0.00 39.07 4.06
5812 8873 2.385013 TGAGTTGCTGTACGATGCAT 57.615 45.000 0.00 0.00 39.07 3.96
5816 8877 2.101582 GGAGGATGAGTTGCTGTACGAT 59.898 50.000 0.00 0.00 0.00 3.73
5817 8878 1.476891 GGAGGATGAGTTGCTGTACGA 59.523 52.381 0.00 0.00 0.00 3.43
5818 8879 1.204704 TGGAGGATGAGTTGCTGTACG 59.795 52.381 0.00 0.00 0.00 3.67
5819 8880 3.201290 CATGGAGGATGAGTTGCTGTAC 58.799 50.000 0.00 0.00 33.31 2.90
5820 8881 2.171237 CCATGGAGGATGAGTTGCTGTA 59.829 50.000 5.56 0.00 41.22 2.74
5822 8883 1.064906 ACCATGGAGGATGAGTTGCTG 60.065 52.381 21.47 0.00 41.22 4.41
5823 8884 1.293062 ACCATGGAGGATGAGTTGCT 58.707 50.000 21.47 0.00 41.22 3.91
5841 8902 1.153229 GGATGGCGGGGTACTCAAC 60.153 63.158 0.00 0.00 0.00 3.18
5843 8904 1.306654 AAGGATGGCGGGGTACTCA 60.307 57.895 0.00 0.00 0.00 3.41
5844 8905 1.446366 GAAGGATGGCGGGGTACTC 59.554 63.158 0.00 0.00 0.00 2.59
5845 8906 2.432300 CGAAGGATGGCGGGGTACT 61.432 63.158 0.00 0.00 0.00 2.73
5846 8907 1.394266 TACGAAGGATGGCGGGGTAC 61.394 60.000 0.00 0.00 0.00 3.34
5847 8908 1.076118 TACGAAGGATGGCGGGGTA 60.076 57.895 0.00 0.00 0.00 3.69
5850 8911 1.067582 GAGTACGAAGGATGGCGGG 59.932 63.158 0.00 0.00 0.00 6.13
5851 8912 1.267261 CTAGAGTACGAAGGATGGCGG 59.733 57.143 0.00 0.00 0.00 6.13
5854 8915 6.395629 TGTTTTTCTAGAGTACGAAGGATGG 58.604 40.000 0.00 0.00 0.00 3.51
5856 8917 7.439381 TGTTGTTTTTCTAGAGTACGAAGGAT 58.561 34.615 0.00 0.00 0.00 3.24
5857 8918 6.808829 TGTTGTTTTTCTAGAGTACGAAGGA 58.191 36.000 0.00 0.00 0.00 3.36
5858 8919 7.384115 TCATGTTGTTTTTCTAGAGTACGAAGG 59.616 37.037 0.00 0.00 0.00 3.46
5860 8921 7.096353 CGTCATGTTGTTTTTCTAGAGTACGAA 60.096 37.037 0.00 0.00 0.00 3.85
5863 8924 7.404139 ACGTCATGTTGTTTTTCTAGAGTAC 57.596 36.000 0.00 0.00 0.00 2.73
5864 8925 7.096353 CGAACGTCATGTTGTTTTTCTAGAGTA 60.096 37.037 6.74 0.00 42.09 2.59
5865 8926 6.292168 CGAACGTCATGTTGTTTTTCTAGAGT 60.292 38.462 6.74 0.00 42.09 3.24
5869 8930 5.970140 TCGAACGTCATGTTGTTTTTCTA 57.030 34.783 6.74 0.00 42.09 2.10
5870 8931 4.868450 TCGAACGTCATGTTGTTTTTCT 57.132 36.364 6.74 0.00 42.09 2.52
5871 8932 5.918387 TTTCGAACGTCATGTTGTTTTTC 57.082 34.783 0.00 0.00 42.09 2.29
5873 8934 7.305763 GCTTATTTTCGAACGTCATGTTGTTTT 60.306 33.333 0.00 0.00 42.09 2.43
5875 8936 5.623673 GCTTATTTTCGAACGTCATGTTGTT 59.376 36.000 0.00 5.26 42.09 2.83
5876 8937 5.049680 AGCTTATTTTCGAACGTCATGTTGT 60.050 36.000 0.00 0.00 42.09 3.32
5877 8938 5.382303 AGCTTATTTTCGAACGTCATGTTG 58.618 37.500 0.00 0.00 42.09 3.33
5879 8940 4.688879 TGAGCTTATTTTCGAACGTCATGT 59.311 37.500 0.00 0.00 0.00 3.21
5880 8941 5.203358 TGAGCTTATTTTCGAACGTCATG 57.797 39.130 0.00 0.00 0.00 3.07
5881 8942 5.856126 TTGAGCTTATTTTCGAACGTCAT 57.144 34.783 0.00 0.00 0.00 3.06
5882 8943 5.333798 CCTTTGAGCTTATTTTCGAACGTCA 60.334 40.000 0.00 0.00 0.00 4.35
5883 8944 5.080068 CCTTTGAGCTTATTTTCGAACGTC 58.920 41.667 0.00 0.00 0.00 4.34
5884 8945 4.612939 GCCTTTGAGCTTATTTTCGAACGT 60.613 41.667 0.00 0.00 0.00 3.99
5885 8946 3.846335 GCCTTTGAGCTTATTTTCGAACG 59.154 43.478 0.00 0.00 0.00 3.95
5886 8947 4.794169 TGCCTTTGAGCTTATTTTCGAAC 58.206 39.130 0.00 0.00 0.00 3.95
5888 8949 5.643379 AATGCCTTTGAGCTTATTTTCGA 57.357 34.783 0.00 0.00 0.00 3.71
5901 8962 2.794350 GGTGTTCGTTCAAATGCCTTTG 59.206 45.455 8.04 8.04 42.60 2.77
5902 8963 2.693074 AGGTGTTCGTTCAAATGCCTTT 59.307 40.909 0.00 0.00 0.00 3.11
5904 8965 1.608590 CAGGTGTTCGTTCAAATGCCT 59.391 47.619 0.00 0.00 0.00 4.75
5906 8967 2.650608 GACAGGTGTTCGTTCAAATGC 58.349 47.619 0.00 0.00 0.00 3.56
5907 8968 2.349438 CCGACAGGTGTTCGTTCAAATG 60.349 50.000 0.00 0.00 0.00 2.32
5908 8969 1.871039 CCGACAGGTGTTCGTTCAAAT 59.129 47.619 0.00 0.00 0.00 2.32
5910 8971 0.531090 CCCGACAGGTGTTCGTTCAA 60.531 55.000 0.00 0.00 35.12 2.69
5911 8972 1.068417 CCCGACAGGTGTTCGTTCA 59.932 57.895 0.00 0.00 35.12 3.18
5912 8973 2.315386 GCCCGACAGGTGTTCGTTC 61.315 63.158 0.00 0.00 38.26 3.95
5913 8974 2.280592 GCCCGACAGGTGTTCGTT 60.281 61.111 0.00 0.00 38.26 3.85
5914 8975 2.879233 ATGCCCGACAGGTGTTCGT 61.879 57.895 0.00 0.00 38.26 3.85
5915 8976 2.047274 ATGCCCGACAGGTGTTCG 60.047 61.111 0.00 0.00 38.26 3.95
5916 8977 2.040544 CCATGCCCGACAGGTGTTC 61.041 63.158 0.00 0.00 38.26 3.18
5917 8978 2.034066 CCATGCCCGACAGGTGTT 59.966 61.111 0.00 0.00 38.26 3.32
5918 8979 3.249189 ACCATGCCCGACAGGTGT 61.249 61.111 0.00 0.00 38.26 4.16
5920 8981 3.249189 ACACCATGCCCGACAGGT 61.249 61.111 0.00 0.00 38.26 4.00
5922 8983 2.815211 CGACACCATGCCCGACAG 60.815 66.667 0.00 0.00 0.00 3.51
5923 8984 4.386951 CCGACACCATGCCCGACA 62.387 66.667 0.00 0.00 0.00 4.35
5932 8993 4.386951 CGTCCATGGCCGACACCA 62.387 66.667 10.23 0.00 45.82 4.17
5934 8995 2.813908 GACGTCCATGGCCGACAC 60.814 66.667 23.95 6.30 0.00 3.67
5937 8998 4.124351 GACGACGTCCATGGCCGA 62.124 66.667 23.95 0.00 0.00 5.54
5940 9001 2.879462 GTCGACGACGTCCATGGC 60.879 66.667 21.63 6.32 40.69 4.40
5941 9002 1.071019 CTTGTCGACGACGTCCATGG 61.071 60.000 21.63 4.97 40.69 3.66
5944 9005 2.640989 CCTTGTCGACGACGTCCA 59.359 61.111 21.63 12.17 40.69 4.02
5946 9007 2.126580 CCCCTTGTCGACGACGTC 60.127 66.667 22.06 18.04 40.69 4.34
5947 9008 4.353437 GCCCCTTGTCGACGACGT 62.353 66.667 22.06 0.00 40.69 4.34
5951 9012 4.796231 CTCCGCCCCTTGTCGACG 62.796 72.222 11.62 0.00 0.00 5.12
5952 9013 3.358076 CTCTCCGCCCCTTGTCGAC 62.358 68.421 9.11 9.11 0.00 4.20
5953 9014 3.068691 CTCTCCGCCCCTTGTCGA 61.069 66.667 0.00 0.00 0.00 4.20
5954 9015 4.148825 CCTCTCCGCCCCTTGTCG 62.149 72.222 0.00 0.00 0.00 4.35
5955 9016 2.683933 TCCTCTCCGCCCCTTGTC 60.684 66.667 0.00 0.00 0.00 3.18
5956 9017 2.164332 TACTCCTCTCCGCCCCTTGT 62.164 60.000 0.00 0.00 0.00 3.16
5959 9020 2.279408 GTACTCCTCTCCGCCCCT 59.721 66.667 0.00 0.00 0.00 4.79
5960 9021 2.838693 GGTACTCCTCTCCGCCCC 60.839 72.222 0.00 0.00 0.00 5.80
5962 9023 2.128507 CCAGGTACTCCTCTCCGCC 61.129 68.421 0.00 0.00 43.07 6.13
5963 9024 2.787567 GCCAGGTACTCCTCTCCGC 61.788 68.421 0.00 0.00 43.07 5.54
5964 9025 2.128507 GGCCAGGTACTCCTCTCCG 61.129 68.421 0.00 0.00 43.07 4.63
5965 9026 2.128507 CGGCCAGGTACTCCTCTCC 61.129 68.421 2.24 0.00 43.07 3.71
5966 9027 1.380112 ACGGCCAGGTACTCCTCTC 60.380 63.158 2.24 0.00 43.07 3.20
5967 9028 1.682684 CACGGCCAGGTACTCCTCT 60.683 63.158 2.24 0.00 43.07 3.69
5968 9029 2.722201 CCACGGCCAGGTACTCCTC 61.722 68.421 2.24 0.00 43.07 3.71
5969 9030 2.683933 CCACGGCCAGGTACTCCT 60.684 66.667 2.24 0.00 46.37 3.69
5970 9031 2.682494 TCCACGGCCAGGTACTCC 60.682 66.667 2.24 0.00 34.60 3.85
5971 9032 1.982938 AGTCCACGGCCAGGTACTC 60.983 63.158 2.24 0.00 34.60 2.59
5972 9033 2.119832 AGTCCACGGCCAGGTACT 59.880 61.111 2.24 6.99 43.88 2.73
5973 9034 2.264794 CAGTCCACGGCCAGGTAC 59.735 66.667 2.24 4.77 0.00 3.34
5974 9035 3.000819 CCAGTCCACGGCCAGGTA 61.001 66.667 2.24 0.00 0.00 3.08
5976 9037 4.394712 GACCAGTCCACGGCCAGG 62.395 72.222 2.24 3.74 0.00 4.45
5995 9056 4.077184 GATGGCGTCGTCCACCCA 62.077 66.667 10.01 1.09 39.25 4.51
6007 9068 3.093278 CTCGCCTTTCACGATGGC 58.907 61.111 0.00 0.00 43.38 4.40
6008 9069 2.802667 CGCTCGCCTTTCACGATGG 61.803 63.158 0.00 0.00 39.12 3.51
6009 9070 2.697425 CGCTCGCCTTTCACGATG 59.303 61.111 0.00 0.00 39.12 3.84
6011 9072 4.735132 CCCGCTCGCCTTTCACGA 62.735 66.667 0.00 0.00 38.02 4.35
6039 9100 4.463879 CCTCTCTGGCCGCCACAG 62.464 72.222 8.43 8.38 37.30 3.66
6040 9101 3.897681 TACCTCTCTGGCCGCCACA 62.898 63.158 8.43 0.00 40.22 4.17
6042 9103 2.759973 CTACCTCTCTGGCCGCCA 60.760 66.667 12.67 12.67 40.22 5.69
6043 9104 1.403687 ATTCTACCTCTCTGGCCGCC 61.404 60.000 1.04 1.04 40.22 6.13
6044 9105 2.128729 ATTCTACCTCTCTGGCCGC 58.871 57.895 0.00 0.00 40.22 6.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.