Multiple sequence alignment - TraesCS7D01G158700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G158700 chr7D 100.000 4736 0 0 1 4736 107662675 107657940 0.000000e+00 8746.0
1 TraesCS7D01G158700 chr7D 82.915 995 118 32 2803 3756 107586274 107585291 0.000000e+00 848.0
2 TraesCS7D01G158700 chr7D 84.716 687 63 19 3350 4014 107616937 107616271 0.000000e+00 649.0
3 TraesCS7D01G158700 chr7D 82.663 323 36 12 739 1048 107588041 107587726 7.810000e-68 268.0
4 TraesCS7D01G158700 chr7D 90.833 120 11 0 3196 3315 107617056 107616937 1.360000e-35 161.0
5 TraesCS7D01G158700 chr7D 86.869 99 9 4 41 137 6755655 6755559 1.800000e-19 108.0
6 TraesCS7D01G158700 chr7D 88.636 88 9 1 45 131 532897133 532897046 6.480000e-19 106.0
7 TraesCS7D01G158700 chr7A 93.481 2577 143 12 1442 3999 112977470 112974900 0.000000e+00 3805.0
8 TraesCS7D01G158700 chr7A 88.442 770 79 8 3196 3964 112968258 112967498 0.000000e+00 920.0
9 TraesCS7D01G158700 chr7A 88.396 767 49 12 3988 4736 112973384 112972640 0.000000e+00 887.0
10 TraesCS7D01G158700 chr7A 90.376 665 40 9 255 902 112978690 112978033 0.000000e+00 852.0
11 TraesCS7D01G158700 chr7A 87.537 674 57 10 3906 4577 112957688 112957040 0.000000e+00 754.0
12 TraesCS7D01G158700 chr7A 90.043 462 34 8 992 1444 112978009 112977551 5.280000e-164 588.0
13 TraesCS7D01G158700 chr7A 81.006 716 104 20 4028 4736 112945977 112945287 1.500000e-149 540.0
14 TraesCS7D01G158700 chr7A 89.474 399 34 6 3350 3747 112772698 112772307 9.150000e-137 497.0
15 TraesCS7D01G158700 chr7A 87.097 403 39 7 3350 3747 112794348 112793954 1.210000e-120 444.0
16 TraesCS7D01G158700 chr7A 87.179 273 15 4 4113 4385 112966080 112965828 4.640000e-75 292.0
17 TraesCS7D01G158700 chr7A 85.388 219 18 8 3538 3755 112947414 112947209 1.030000e-51 215.0
18 TraesCS7D01G158700 chr7A 86.310 168 14 3 4570 4736 112956512 112956353 1.750000e-39 174.0
19 TraesCS7D01G158700 chr7A 90.000 90 9 0 3196 3285 112772806 112772717 2.990000e-22 117.0
20 TraesCS7D01G158700 chr7A 90.000 90 9 0 3196 3285 112794456 112794367 2.990000e-22 117.0
21 TraesCS7D01G158700 chr7A 86.170 94 9 4 46 137 33028328 33028237 1.080000e-16 99.0
22 TraesCS7D01G158700 chr7A 100.000 28 0 0 3966 3993 112946224 112946197 9.000000e-03 52.8
23 TraesCS7D01G158700 chr7B 93.852 1594 74 11 3146 4736 66316388 66314816 0.000000e+00 2379.0
24 TraesCS7D01G158700 chr7B 93.767 1508 73 9 1648 3149 66317930 66316438 0.000000e+00 2244.0
25 TraesCS7D01G158700 chr7B 89.096 752 56 18 156 902 66319209 66318479 0.000000e+00 911.0
26 TraesCS7D01G158700 chr7B 86.589 604 52 8 4018 4613 66308002 66307420 1.440000e-179 640.0
27 TraesCS7D01G158700 chr7B 85.740 554 54 17 954 1485 66318477 66317927 3.200000e-156 562.0
28 TraesCS7D01G158700 chr7B 89.423 104 11 0 4623 4726 66233916 66233813 1.070000e-26 132.0
29 TraesCS7D01G158700 chr7B 85.088 114 17 0 758 871 66257547 66257434 2.990000e-22 117.0
30 TraesCS7D01G158700 chr7B 83.471 121 18 1 758 876 66232438 66232318 1.390000e-20 111.0
31 TraesCS7D01G158700 chr7B 100.000 58 0 0 3936 3993 66308060 66308003 1.800000e-19 108.0
32 TraesCS7D01G158700 chr1A 90.526 95 6 3 41 133 570588253 570588346 6.440000e-24 122.0
33 TraesCS7D01G158700 chr2B 91.358 81 5 2 55 133 641652346 641652426 5.010000e-20 110.0
34 TraesCS7D01G158700 chr2B 87.778 90 8 3 55 142 603425065 603425153 8.380000e-18 102.0
35 TraesCS7D01G158700 chr5A 87.500 88 8 3 52 138 616913320 616913405 1.080000e-16 99.0
36 TraesCS7D01G158700 chr5D 84.043 94 12 3 41 133 481955372 481955463 2.350000e-13 87.9
37 TraesCS7D01G158700 chr2D 83.158 95 14 2 45 138 388057587 388057680 8.440000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G158700 chr7D 107657940 107662675 4735 True 8746.000000 8746 100.00000 1 4736 1 chr7D.!!$R2 4735
1 TraesCS7D01G158700 chr7D 107585291 107588041 2750 True 558.000000 848 82.78900 739 3756 2 chr7D.!!$R4 3017
2 TraesCS7D01G158700 chr7D 107616271 107617056 785 True 405.000000 649 87.77450 3196 4014 2 chr7D.!!$R5 818
3 TraesCS7D01G158700 chr7A 112972640 112978690 6050 True 1533.000000 3805 90.57400 255 4736 4 chr7A.!!$R7 4481
4 TraesCS7D01G158700 chr7A 112965828 112968258 2430 True 606.000000 920 87.81050 3196 4385 2 chr7A.!!$R6 1189
5 TraesCS7D01G158700 chr7A 112956353 112957688 1335 True 464.000000 754 86.92350 3906 4736 2 chr7A.!!$R5 830
6 TraesCS7D01G158700 chr7A 112793954 112794456 502 True 280.500000 444 88.54850 3196 3747 2 chr7A.!!$R3 551
7 TraesCS7D01G158700 chr7A 112945287 112947414 2127 True 269.266667 540 88.79800 3538 4736 3 chr7A.!!$R4 1198
8 TraesCS7D01G158700 chr7B 66314816 66319209 4393 True 1524.000000 2379 90.61375 156 4736 4 chr7B.!!$R4 4580
9 TraesCS7D01G158700 chr7B 66307420 66308060 640 True 374.000000 640 93.29450 3936 4613 2 chr7B.!!$R3 677

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
987 1021 0.179230 CGATCGGTATACGGAGCGTC 60.179 60.0 31.02 17.85 45.57 5.19 F
1131 1180 0.250640 GCCTACTCCATCATGGCAGG 60.251 60.0 12.40 12.40 42.79 4.85 F
1901 2039 0.102481 ACGAGCAGACGTTTCACTGT 59.898 50.0 4.18 0.00 44.14 3.55 F
1928 2066 0.178767 TCTGCTGCTGACACAACTGT 59.821 50.0 5.03 0.00 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1902 2040 0.469494 TGTCAGCAGCAGAAACAGGA 59.531 50.000 0.00 0.0 0.0 3.86 R
2164 2311 2.159043 GGAAGAGCGATTGTCATGAGGA 60.159 50.000 0.00 0.0 0.0 3.71 R
3325 4335 4.619973 GGCAATGAACATCAAGAAACACA 58.380 39.130 0.00 0.0 0.0 3.72 R
3926 5812 2.231964 GCATGCCATTCCTTGTTTCTCA 59.768 45.455 6.36 0.0 0.0 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 9.467258 AACATTGTTCAATCTAGTGTCAATTTG 57.533 29.630 0.00 0.00 0.00 2.32
41 42 8.632679 ACATTGTTCAATCTAGTGTCAATTTGT 58.367 29.630 0.00 0.00 0.00 2.83
42 43 8.908678 CATTGTTCAATCTAGTGTCAATTTGTG 58.091 33.333 0.00 0.00 0.00 3.33
43 44 7.800155 TGTTCAATCTAGTGTCAATTTGTGA 57.200 32.000 0.00 0.00 0.00 3.58
44 45 7.864686 TGTTCAATCTAGTGTCAATTTGTGAG 58.135 34.615 0.00 0.00 36.74 3.51
45 46 7.498900 TGTTCAATCTAGTGTCAATTTGTGAGT 59.501 33.333 0.00 0.00 36.74 3.41
46 47 7.658179 TCAATCTAGTGTCAATTTGTGAGTC 57.342 36.000 0.00 0.00 36.74 3.36
47 48 7.445121 TCAATCTAGTGTCAATTTGTGAGTCT 58.555 34.615 0.00 0.00 36.74 3.24
48 49 8.585018 TCAATCTAGTGTCAATTTGTGAGTCTA 58.415 33.333 0.00 0.00 36.74 2.59
49 50 9.376075 CAATCTAGTGTCAATTTGTGAGTCTAT 57.624 33.333 0.00 0.00 36.74 1.98
52 53 9.462606 TCTAGTGTCAATTTGTGAGTCTATAGA 57.537 33.333 0.00 0.00 36.74 1.98
55 56 8.976353 AGTGTCAATTTGTGAGTCTATAGATCT 58.024 33.333 5.57 0.00 36.74 2.75
89 90 7.925043 TTTTACTTCAGTGTTCTTTGTACCA 57.075 32.000 0.00 0.00 0.00 3.25
90 91 8.514330 TTTTACTTCAGTGTTCTTTGTACCAT 57.486 30.769 0.00 0.00 0.00 3.55
91 92 7.724305 TTACTTCAGTGTTCTTTGTACCATC 57.276 36.000 0.00 0.00 0.00 3.51
92 93 5.930135 ACTTCAGTGTTCTTTGTACCATCT 58.070 37.500 0.00 0.00 0.00 2.90
93 94 6.357367 ACTTCAGTGTTCTTTGTACCATCTT 58.643 36.000 0.00 0.00 0.00 2.40
94 95 6.260936 ACTTCAGTGTTCTTTGTACCATCTTG 59.739 38.462 0.00 0.00 0.00 3.02
95 96 5.924356 TCAGTGTTCTTTGTACCATCTTGA 58.076 37.500 0.00 0.00 0.00 3.02
96 97 6.533730 TCAGTGTTCTTTGTACCATCTTGAT 58.466 36.000 0.00 0.00 0.00 2.57
97 98 7.676004 TCAGTGTTCTTTGTACCATCTTGATA 58.324 34.615 0.00 0.00 0.00 2.15
98 99 7.819415 TCAGTGTTCTTTGTACCATCTTGATAG 59.181 37.037 0.00 0.00 0.00 2.08
99 100 7.604164 CAGTGTTCTTTGTACCATCTTGATAGT 59.396 37.037 0.00 0.00 0.00 2.12
100 101 8.157476 AGTGTTCTTTGTACCATCTTGATAGTT 58.843 33.333 0.00 0.00 0.00 2.24
101 102 8.230486 GTGTTCTTTGTACCATCTTGATAGTTG 58.770 37.037 0.00 0.00 0.00 3.16
102 103 8.154203 TGTTCTTTGTACCATCTTGATAGTTGA 58.846 33.333 0.00 0.00 0.00 3.18
103 104 9.167311 GTTCTTTGTACCATCTTGATAGTTGAT 57.833 33.333 0.00 0.00 0.00 2.57
104 105 8.722480 TCTTTGTACCATCTTGATAGTTGATG 57.278 34.615 0.00 0.00 37.79 3.07
105 106 8.539544 TCTTTGTACCATCTTGATAGTTGATGA 58.460 33.333 0.00 0.00 39.72 2.92
106 107 9.166173 CTTTGTACCATCTTGATAGTTGATGAA 57.834 33.333 0.00 0.00 39.72 2.57
107 108 9.685276 TTTGTACCATCTTGATAGTTGATGAAT 57.315 29.630 0.00 0.00 39.72 2.57
109 110 9.987272 TGTACCATCTTGATAGTTGATGAATAG 57.013 33.333 0.00 0.00 39.72 1.73
112 113 9.941325 ACCATCTTGATAGTTGATGAATAGATC 57.059 33.333 0.00 0.00 39.72 2.75
113 114 9.085250 CCATCTTGATAGTTGATGAATAGATCG 57.915 37.037 0.00 0.00 39.72 3.69
114 115 9.085250 CATCTTGATAGTTGATGAATAGATCGG 57.915 37.037 0.00 0.00 39.72 4.18
115 116 8.409358 TCTTGATAGTTGATGAATAGATCGGA 57.591 34.615 0.00 0.00 0.00 4.55
116 117 8.860088 TCTTGATAGTTGATGAATAGATCGGAA 58.140 33.333 0.00 0.00 0.00 4.30
117 118 9.138062 CTTGATAGTTGATGAATAGATCGGAAG 57.862 37.037 0.00 0.00 0.00 3.46
118 119 8.183104 TGATAGTTGATGAATAGATCGGAAGT 57.817 34.615 0.00 0.00 0.00 3.01
119 120 8.642432 TGATAGTTGATGAATAGATCGGAAGTT 58.358 33.333 0.00 0.00 0.00 2.66
123 124 9.482627 AGTTGATGAATAGATCGGAAGTTATTC 57.517 33.333 10.25 10.25 34.18 1.75
124 125 9.482627 GTTGATGAATAGATCGGAAGTTATTCT 57.517 33.333 14.81 2.82 35.63 2.40
125 126 9.698309 TTGATGAATAGATCGGAAGTTATTCTC 57.302 33.333 14.81 11.72 35.63 2.87
126 127 8.023706 TGATGAATAGATCGGAAGTTATTCTCG 58.976 37.037 14.81 0.00 35.63 4.04
127 128 7.506328 TGAATAGATCGGAAGTTATTCTCGA 57.494 36.000 14.81 0.00 40.17 4.04
128 129 7.937649 TGAATAGATCGGAAGTTATTCTCGAA 58.062 34.615 14.81 0.00 39.69 3.71
129 130 8.410912 TGAATAGATCGGAAGTTATTCTCGAAA 58.589 33.333 14.81 0.00 39.69 3.46
130 131 9.245962 GAATAGATCGGAAGTTATTCTCGAAAA 57.754 33.333 10.04 0.00 39.69 2.29
131 132 9.595823 AATAGATCGGAAGTTATTCTCGAAAAA 57.404 29.630 0.00 0.00 39.69 1.94
150 151 4.677673 AAAAGAAAATTGTGAGCCAGCT 57.322 36.364 0.00 0.00 0.00 4.24
151 152 3.655276 AAGAAAATTGTGAGCCAGCTG 57.345 42.857 6.78 6.78 0.00 4.24
152 153 1.271656 AGAAAATTGTGAGCCAGCTGC 59.728 47.619 8.66 3.91 41.71 5.25
153 154 1.000060 GAAAATTGTGAGCCAGCTGCA 60.000 47.619 8.66 0.00 44.83 4.41
154 155 0.601558 AAATTGTGAGCCAGCTGCAG 59.398 50.000 10.11 10.11 44.83 4.41
155 156 1.874345 AATTGTGAGCCAGCTGCAGC 61.874 55.000 31.53 31.53 44.83 5.25
156 157 3.778097 TTGTGAGCCAGCTGCAGCA 62.778 57.895 38.24 15.93 44.83 4.41
157 158 2.981909 GTGAGCCAGCTGCAGCAA 60.982 61.111 38.24 14.84 44.83 3.91
158 159 2.981909 TGAGCCAGCTGCAGCAAC 60.982 61.111 38.24 26.19 44.83 4.17
159 160 2.981909 GAGCCAGCTGCAGCAACA 60.982 61.111 38.24 0.00 44.83 3.33
160 161 2.520020 AGCCAGCTGCAGCAACAA 60.520 55.556 38.24 0.00 44.83 2.83
169 170 2.592194 CTGCAGCAACAATTAGCAGTG 58.408 47.619 0.00 0.00 45.57 3.66
178 179 5.463061 GCAACAATTAGCAGTGACAAACAAT 59.537 36.000 0.00 0.00 0.00 2.71
203 204 8.147642 TCTGAAATTCTCTCTGTCAGTTTTTC 57.852 34.615 0.00 3.30 37.55 2.29
207 208 7.961325 AATTCTCTCTGTCAGTTTTTCTCTC 57.039 36.000 0.00 0.00 0.00 3.20
218 219 4.283212 CAGTTTTTCTCTCCCTCTCTCACT 59.717 45.833 0.00 0.00 0.00 3.41
239 240 3.762407 TTTGACGAGTTGATCCTTCCA 57.238 42.857 0.00 0.00 0.00 3.53
240 241 2.743636 TGACGAGTTGATCCTTCCAC 57.256 50.000 0.00 0.00 0.00 4.02
247 248 4.142600 CGAGTTGATCCTTCCACCAAATTC 60.143 45.833 0.00 0.00 0.00 2.17
344 346 2.690510 GCTGCTCCTCCCCTTCCT 60.691 66.667 0.00 0.00 0.00 3.36
522 525 3.753070 CTCTAGTCGGTTCGCGGGC 62.753 68.421 6.13 0.00 0.00 6.13
543 546 3.885521 CGGCGTCCTCCGGTAGTC 61.886 72.222 0.00 0.00 45.38 2.59
592 595 3.861263 GGACGTTGCCGGCGATTC 61.861 66.667 21.90 18.68 45.55 2.52
595 598 3.913573 CGTTGCCGGCGATTCGAG 61.914 66.667 21.90 5.69 0.00 4.04
606 609 1.790838 GCGATTCGAGCTACGCGATAT 60.791 52.381 15.93 0.00 41.49 1.63
828 854 4.749310 AGACTTGCTCCGCCTGCG 62.749 66.667 4.20 4.20 39.44 5.18
832 858 2.202878 TTGCTCCGCCTGCGTATC 60.203 61.111 10.94 0.00 37.81 2.24
899 932 2.677836 CGTCAGCCTTAATTAGCAAGCA 59.322 45.455 0.00 0.00 0.00 3.91
914 947 3.740397 GCAGCATGGCAGCGAACA 61.740 61.111 0.00 0.00 40.15 3.18
917 950 0.731514 CAGCATGGCAGCGAACAAAG 60.732 55.000 0.00 0.00 40.15 2.77
930 963 3.063997 GCGAACAAAGATGTACCAGGATG 59.936 47.826 0.00 0.00 39.40 3.51
934 967 5.435686 ACAAAGATGTACCAGGATGCTTA 57.564 39.130 0.00 0.00 38.24 3.09
936 969 5.185454 CAAAGATGTACCAGGATGCTTACA 58.815 41.667 0.00 1.78 37.43 2.41
943 976 5.661312 TGTACCAGGATGCTTACAGATTAGT 59.339 40.000 0.00 0.00 30.85 2.24
948 981 6.203723 CCAGGATGCTTACAGATTAGTTAAGC 59.796 42.308 5.76 5.76 42.30 3.09
951 984 8.364142 AGGATGCTTACAGATTAGTTAAGCTAG 58.636 37.037 12.42 0.00 42.40 3.42
984 1018 0.454620 CTGCGATCGGTATACGGAGC 60.455 60.000 18.30 16.29 44.45 4.70
986 1020 1.864862 CGATCGGTATACGGAGCGT 59.135 57.895 31.02 12.33 45.57 5.07
987 1021 0.179230 CGATCGGTATACGGAGCGTC 60.179 60.000 31.02 17.85 45.57 5.19
990 1030 1.009222 CGGTATACGGAGCGTCCAC 60.009 63.158 4.48 0.00 41.54 4.02
1020 1060 2.276116 GGAGTGTCTCCGCCTGACA 61.276 63.158 0.00 0.00 41.08 3.58
1131 1180 0.250640 GCCTACTCCATCATGGCAGG 60.251 60.000 12.40 12.40 42.79 4.85
1146 1195 1.911057 GCAGGAGCCTGGTAAAACTT 58.089 50.000 17.64 0.00 43.77 2.66
1147 1196 3.067684 GCAGGAGCCTGGTAAAACTTA 57.932 47.619 17.64 0.00 43.77 2.24
1149 1198 4.017126 GCAGGAGCCTGGTAAAACTTATT 58.983 43.478 17.64 0.00 43.77 1.40
1155 1204 6.038714 GGAGCCTGGTAAAACTTATTCAGATG 59.961 42.308 0.00 0.00 0.00 2.90
1171 1220 5.726980 TCAGATGCACTTTTGGCTTTTAT 57.273 34.783 0.00 0.00 0.00 1.40
1185 1234 7.665561 TTGGCTTTTATTGTTAATTCCTTGC 57.334 32.000 0.00 0.00 0.00 4.01
1201 1252 3.194329 TCCTTGCATCACTCTACTCACTG 59.806 47.826 0.00 0.00 0.00 3.66
1270 1322 1.814394 TGACATTCAGCAACCAGATGC 59.186 47.619 0.00 0.00 46.78 3.91
1295 1350 1.406751 GCTGAAGCTCCCTTCTTCCTC 60.407 57.143 5.21 0.00 46.13 3.71
1359 1414 3.007290 TGTCCACAGACCTCTTTCTGATG 59.993 47.826 7.12 2.41 45.19 3.07
1424 1479 2.370189 GCCCAGCCAGAGTATTACTGAT 59.630 50.000 0.00 0.00 37.54 2.90
1514 1652 9.869757 ACTTTTATGTTAAGAAGCTTTGTTTGT 57.130 25.926 0.00 0.00 0.00 2.83
1539 1677 7.698130 GTGCATCTCCTGTATTAAATGTGTTTC 59.302 37.037 0.00 0.00 0.00 2.78
1547 1685 7.542130 CCTGTATTAAATGTGTTTCTTTCTGGC 59.458 37.037 0.00 0.00 0.00 4.85
1562 1700 2.790433 TCTGGCTGCTTTATTTTCCGT 58.210 42.857 0.00 0.00 0.00 4.69
1573 1711 6.483974 TGCTTTATTTTCCGTCTGTTCAGTAA 59.516 34.615 0.00 0.00 0.00 2.24
1637 1775 4.704965 ACTTCTGTAAGGTTGTCCACTTC 58.295 43.478 0.00 0.00 37.01 3.01
1714 1852 0.461548 TCTGTGATGCCGATGAGTCC 59.538 55.000 0.00 0.00 0.00 3.85
1756 1894 7.611213 TTATTTAGAAGCTAGGTTTGTCAGC 57.389 36.000 8.87 0.00 35.49 4.26
1832 1970 6.419116 CACAATGTCATAGTTACTCTGGATCG 59.581 42.308 0.00 0.00 0.00 3.69
1846 1984 1.216122 GGATCGCTCTCAGCAATCAC 58.784 55.000 0.00 0.00 42.58 3.06
1900 2038 2.046283 TACGAGCAGACGTTTCACTG 57.954 50.000 8.64 0.00 44.14 3.66
1901 2039 0.102481 ACGAGCAGACGTTTCACTGT 59.898 50.000 4.18 0.00 44.14 3.55
1902 2040 1.209128 CGAGCAGACGTTTCACTGTT 58.791 50.000 4.18 0.00 36.62 3.16
1928 2066 0.178767 TCTGCTGCTGACACAACTGT 59.821 50.000 5.03 0.00 0.00 3.55
1954 2092 8.470805 TGGAAGCAAAACTTGTAAGTCATTTTA 58.529 29.630 0.00 0.00 39.29 1.52
1955 2093 9.476202 GGAAGCAAAACTTGTAAGTCATTTTAT 57.524 29.630 0.00 0.00 39.29 1.40
1959 2097 9.368921 GCAAAACTTGTAAGTCATTTTATTTGC 57.631 29.630 17.60 17.60 41.45 3.68
2007 2145 3.748027 GCTTTCCCTCTGCTGATCATGAT 60.748 47.826 8.25 8.25 0.00 2.45
2063 2210 5.330455 TCTGTCGCAGTCTAATGATTCTT 57.670 39.130 6.72 0.00 32.61 2.52
2070 2217 5.981915 CGCAGTCTAATGATTCTTCAGATGA 59.018 40.000 0.00 0.00 34.73 2.92
2071 2218 6.478016 CGCAGTCTAATGATTCTTCAGATGAA 59.522 38.462 1.38 1.38 34.73 2.57
2094 2241 7.604164 TGAACAGATTACTGATGAAAGGAAGTC 59.396 37.037 0.00 0.00 46.03 3.01
2122 2269 5.560760 CGTGAGTTGCAGTCAATTGTGTAAT 60.561 40.000 5.13 0.00 34.29 1.89
2127 2274 8.165239 AGTTGCAGTCAATTGTGTAATAAAGA 57.835 30.769 5.13 0.00 34.29 2.52
2132 2279 8.600625 GCAGTCAATTGTGTAATAAAGACGATA 58.399 33.333 5.13 0.00 32.52 2.92
2164 2311 9.565090 TCTAATAGCATTATCAGTTCTGCAAAT 57.435 29.630 0.00 0.00 37.09 2.32
2260 2408 5.866207 TCTTCTAGAAGAAAGAAACCACCC 58.134 41.667 28.93 0.00 43.79 4.61
2302 2453 0.546747 TCCCGTCCAATCCTCCTGTT 60.547 55.000 0.00 0.00 0.00 3.16
2332 2483 2.215907 ATCGATTTCCAGTCTCTGCG 57.784 50.000 0.00 0.00 0.00 5.18
2359 2510 5.140747 AGAGGAGATATTATGCGGTGTTC 57.859 43.478 0.00 0.00 0.00 3.18
2402 2650 9.875691 GTGAAAGATATCAGTGGTATATATGCA 57.124 33.333 5.32 0.00 0.00 3.96
2421 2669 6.899393 ATGCACTTTCCTGTTTCATTTCTA 57.101 33.333 0.00 0.00 0.00 2.10
2596 3543 1.678970 GCCAGGGGGTCATGTCAAC 60.679 63.158 0.00 0.00 36.17 3.18
2739 3687 7.420184 TCTGTTTTCACATATATACATGCCG 57.580 36.000 0.00 0.00 30.39 5.69
2806 3754 8.825667 TTTGCAGGAAAACATTCTAAAATACC 57.174 30.769 0.00 0.00 0.00 2.73
2866 3814 2.191128 AGGTGCAAGTCTAGCAAAGG 57.809 50.000 0.00 0.00 44.64 3.11
3041 3991 7.556733 TTATTTGTTGTCGACCTACAAAACT 57.443 32.000 31.86 24.16 42.83 2.66
3143 4093 9.727627 GTAATTCTATTTGCAAATCTTCCTCTG 57.272 33.333 27.28 9.23 0.00 3.35
3232 4235 7.560368 TGGTAATTTCAAACATTTGTGGAAGT 58.440 30.769 4.36 1.70 39.18 3.01
3233 4236 8.043710 TGGTAATTTCAAACATTTGTGGAAGTT 58.956 29.630 4.36 9.45 39.18 2.66
3244 4254 8.181904 ACATTTGTGGAAGTTGATAGTTGATT 57.818 30.769 0.00 0.00 0.00 2.57
3315 4325 4.080526 AGACAAGGAAACGGGTAATGCTAT 60.081 41.667 0.00 0.00 0.00 2.97
3322 4332 5.235831 GGAAACGGGTAATGCTATCTACAAC 59.764 44.000 0.00 0.00 0.00 3.32
3325 4335 4.347000 ACGGGTAATGCTATCTACAACCAT 59.653 41.667 0.00 0.00 0.00 3.55
3789 5667 2.615447 AGACGAACGTGTCTCAGTAACA 59.385 45.455 4.19 0.00 45.97 2.41
3803 5681 5.888724 TCTCAGTAACAAGGACATAGGAGAG 59.111 44.000 0.00 0.00 0.00 3.20
3829 5707 2.552093 ACTGTACTAGGACCATGCCT 57.448 50.000 1.66 0.00 42.15 4.75
3833 5711 1.069358 GTACTAGGACCATGCCTGCTC 59.931 57.143 0.00 0.00 39.08 4.26
3874 5752 6.711194 TGTGATTAGGTTTTCGTTGATGGTTA 59.289 34.615 0.00 0.00 0.00 2.85
3875 5753 7.228906 TGTGATTAGGTTTTCGTTGATGGTTAA 59.771 33.333 0.00 0.00 0.00 2.01
4085 7917 3.795659 CATTCATCTGATCATTCGTGCG 58.204 45.455 0.00 0.00 0.00 5.34
4281 9027 3.057526 GGTGTTATGTTTTGTGGGCTCTC 60.058 47.826 0.00 0.00 0.00 3.20
4689 9992 2.931969 TCACAACTCATAAGATGCTGCG 59.068 45.455 0.00 0.00 0.00 5.18
4693 9996 4.142816 ACAACTCATAAGATGCTGCGAAAC 60.143 41.667 0.00 0.00 0.00 2.78
4726 10029 7.417612 TGCAACAGTTCTTGATTTAAAGAGAC 58.582 34.615 0.00 0.00 37.48 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 9.467258 CAAATTGACACTAGATTGAACAATGTT 57.533 29.630 0.00 0.00 32.26 2.71
15 16 8.632679 ACAAATTGACACTAGATTGAACAATGT 58.367 29.630 0.00 3.78 32.26 2.71
16 17 8.908678 CACAAATTGACACTAGATTGAACAATG 58.091 33.333 0.00 0.00 32.26 2.82
17 18 8.849168 TCACAAATTGACACTAGATTGAACAAT 58.151 29.630 0.00 0.00 32.76 2.71
18 19 8.219546 TCACAAATTGACACTAGATTGAACAA 57.780 30.769 0.00 0.00 0.00 2.83
19 20 7.498900 ACTCACAAATTGACACTAGATTGAACA 59.501 33.333 0.00 0.00 0.00 3.18
20 21 7.865707 ACTCACAAATTGACACTAGATTGAAC 58.134 34.615 0.00 0.00 0.00 3.18
21 22 7.933577 AGACTCACAAATTGACACTAGATTGAA 59.066 33.333 0.00 0.00 0.00 2.69
22 23 7.445121 AGACTCACAAATTGACACTAGATTGA 58.555 34.615 0.00 0.00 0.00 2.57
23 24 7.664082 AGACTCACAAATTGACACTAGATTG 57.336 36.000 0.00 0.00 0.00 2.67
26 27 9.462606 TCTATAGACTCACAAATTGACACTAGA 57.537 33.333 0.00 0.00 0.00 2.43
29 30 8.976353 AGATCTATAGACTCACAAATTGACACT 58.024 33.333 4.10 0.00 0.00 3.55
64 65 8.338072 TGGTACAAAGAACACTGAAGTAAAAA 57.662 30.769 0.00 0.00 31.92 1.94
65 66 7.925043 TGGTACAAAGAACACTGAAGTAAAA 57.075 32.000 0.00 0.00 31.92 1.52
86 87 9.941325 GATCTATTCATCAACTATCAAGATGGT 57.059 33.333 0.00 0.00 39.59 3.55
87 88 9.085250 CGATCTATTCATCAACTATCAAGATGG 57.915 37.037 0.00 0.00 39.59 3.51
88 89 9.085250 CCGATCTATTCATCAACTATCAAGATG 57.915 37.037 0.00 0.00 40.29 2.90
89 90 9.029368 TCCGATCTATTCATCAACTATCAAGAT 57.971 33.333 0.00 0.00 0.00 2.40
90 91 8.409358 TCCGATCTATTCATCAACTATCAAGA 57.591 34.615 0.00 0.00 0.00 3.02
91 92 9.138062 CTTCCGATCTATTCATCAACTATCAAG 57.862 37.037 0.00 0.00 0.00 3.02
92 93 8.642432 ACTTCCGATCTATTCATCAACTATCAA 58.358 33.333 0.00 0.00 0.00 2.57
93 94 8.183104 ACTTCCGATCTATTCATCAACTATCA 57.817 34.615 0.00 0.00 0.00 2.15
97 98 9.482627 GAATAACTTCCGATCTATTCATCAACT 57.517 33.333 5.64 0.00 33.07 3.16
98 99 9.482627 AGAATAACTTCCGATCTATTCATCAAC 57.517 33.333 10.87 0.00 34.56 3.18
99 100 9.698309 GAGAATAACTTCCGATCTATTCATCAA 57.302 33.333 10.87 0.00 34.56 2.57
100 101 8.023706 CGAGAATAACTTCCGATCTATTCATCA 58.976 37.037 10.87 0.00 34.56 3.07
101 102 8.237949 TCGAGAATAACTTCCGATCTATTCATC 58.762 37.037 10.87 6.37 34.56 2.92
102 103 8.112016 TCGAGAATAACTTCCGATCTATTCAT 57.888 34.615 10.87 0.41 34.56 2.57
103 104 7.506328 TCGAGAATAACTTCCGATCTATTCA 57.494 36.000 10.87 0.00 34.56 2.57
104 105 8.798748 TTTCGAGAATAACTTCCGATCTATTC 57.201 34.615 0.00 0.00 35.49 1.75
105 106 9.595823 TTTTTCGAGAATAACTTCCGATCTATT 57.404 29.630 0.00 0.00 35.49 1.73
128 129 4.812626 CAGCTGGCTCACAATTTTCTTTTT 59.187 37.500 5.57 0.00 0.00 1.94
129 130 4.374399 CAGCTGGCTCACAATTTTCTTTT 58.626 39.130 5.57 0.00 0.00 2.27
130 131 3.801293 GCAGCTGGCTCACAATTTTCTTT 60.801 43.478 17.12 0.00 40.25 2.52
131 132 2.288640 GCAGCTGGCTCACAATTTTCTT 60.289 45.455 17.12 0.00 40.25 2.52
132 133 1.271656 GCAGCTGGCTCACAATTTTCT 59.728 47.619 17.12 0.00 40.25 2.52
133 134 1.000060 TGCAGCTGGCTCACAATTTTC 60.000 47.619 17.12 0.00 45.15 2.29
134 135 1.000506 CTGCAGCTGGCTCACAATTTT 59.999 47.619 17.12 0.00 45.15 1.82
135 136 0.601558 CTGCAGCTGGCTCACAATTT 59.398 50.000 17.12 0.00 45.15 1.82
136 137 1.874345 GCTGCAGCTGGCTCACAATT 61.874 55.000 31.33 0.00 45.15 2.32
137 138 2.341101 GCTGCAGCTGGCTCACAAT 61.341 57.895 31.33 0.00 45.15 2.71
138 139 2.981909 GCTGCAGCTGGCTCACAA 60.982 61.111 31.33 0.00 45.15 3.33
139 140 3.778097 TTGCTGCAGCTGGCTCACA 62.778 57.895 36.61 13.65 45.15 3.58
140 141 2.981909 TTGCTGCAGCTGGCTCAC 60.982 61.111 36.61 8.49 45.15 3.51
141 142 2.981909 GTTGCTGCAGCTGGCTCA 60.982 61.111 36.61 15.23 45.15 4.26
142 143 1.874345 ATTGTTGCTGCAGCTGGCTC 61.874 55.000 36.61 21.74 45.15 4.70
143 144 1.469335 AATTGTTGCTGCAGCTGGCT 61.469 50.000 36.61 16.49 45.15 4.75
144 145 0.244450 TAATTGTTGCTGCAGCTGGC 59.756 50.000 36.61 25.59 42.66 4.85
145 146 1.734707 GCTAATTGTTGCTGCAGCTGG 60.735 52.381 36.61 19.69 42.66 4.85
146 147 1.068125 TGCTAATTGTTGCTGCAGCTG 60.068 47.619 36.61 10.11 42.66 4.24
147 148 1.201647 CTGCTAATTGTTGCTGCAGCT 59.798 47.619 36.61 19.69 43.30 4.24
148 149 1.625616 CTGCTAATTGTTGCTGCAGC 58.374 50.000 31.89 31.89 43.30 5.25
150 151 2.030893 GTCACTGCTAATTGTTGCTGCA 60.031 45.455 0.00 0.00 0.00 4.41
151 152 2.030893 TGTCACTGCTAATTGTTGCTGC 60.031 45.455 0.00 0.00 0.00 5.25
152 153 3.902261 TGTCACTGCTAATTGTTGCTG 57.098 42.857 0.00 0.00 0.00 4.41
153 154 4.097741 TGTTTGTCACTGCTAATTGTTGCT 59.902 37.500 0.00 0.00 0.00 3.91
154 155 4.358851 TGTTTGTCACTGCTAATTGTTGC 58.641 39.130 0.00 0.00 0.00 4.17
155 156 6.919662 AGATTGTTTGTCACTGCTAATTGTTG 59.080 34.615 0.00 0.00 0.00 3.33
156 157 6.919662 CAGATTGTTTGTCACTGCTAATTGTT 59.080 34.615 0.00 0.00 0.00 2.83
157 158 6.262944 TCAGATTGTTTGTCACTGCTAATTGT 59.737 34.615 0.00 0.00 0.00 2.71
158 159 6.671190 TCAGATTGTTTGTCACTGCTAATTG 58.329 36.000 0.00 0.00 0.00 2.32
159 160 6.882610 TCAGATTGTTTGTCACTGCTAATT 57.117 33.333 0.00 0.00 0.00 1.40
160 161 6.882610 TTCAGATTGTTTGTCACTGCTAAT 57.117 33.333 0.00 0.00 0.00 1.73
169 170 7.869800 ACAGAGAGAATTTCAGATTGTTTGTC 58.130 34.615 0.00 0.00 0.00 3.18
178 179 7.989741 AGAAAAACTGACAGAGAGAATTTCAGA 59.010 33.333 10.08 0.00 37.67 3.27
203 204 3.366883 CGTCAAAAGTGAGAGAGGGAGAG 60.367 52.174 0.00 0.00 33.27 3.20
207 208 2.297597 ACTCGTCAAAAGTGAGAGAGGG 59.702 50.000 11.46 0.00 40.99 4.30
218 219 3.813166 GTGGAAGGATCAACTCGTCAAAA 59.187 43.478 0.00 0.00 0.00 2.44
239 240 1.229496 GGGGCAAGGGGAATTTGGT 60.229 57.895 0.00 0.00 0.00 3.67
240 241 0.621280 ATGGGGCAAGGGGAATTTGG 60.621 55.000 0.00 0.00 0.00 3.28
276 277 2.954868 CGGCGTCCGTCTGTATGC 60.955 66.667 9.69 0.00 42.73 3.14
327 329 2.690510 AGGAAGGGGAGGAGCAGC 60.691 66.667 0.00 0.00 0.00 5.25
399 401 1.839994 TGTTTAGGAGATCCAGCAGGG 59.160 52.381 0.92 0.00 38.89 4.45
447 449 1.528824 CAGCCCGTTCCAGATCCAT 59.471 57.895 0.00 0.00 0.00 3.41
448 450 2.669133 CCAGCCCGTTCCAGATCCA 61.669 63.158 0.00 0.00 0.00 3.41
499 501 1.935327 GCGAACCGACTAGAGGCAGT 61.935 60.000 0.00 0.00 0.00 4.40
552 555 2.989253 CAACCGCCAACTTCCCCC 60.989 66.667 0.00 0.00 0.00 5.40
606 609 2.254152 ACCTGGTCCAGCTGATAAGA 57.746 50.000 17.39 0.00 0.00 2.10
864 897 2.740055 GACGTGCTGCCTGTCAGG 60.740 66.667 15.15 15.15 43.06 3.86
899 932 0.890542 TCTTTGTTCGCTGCCATGCT 60.891 50.000 0.00 0.00 0.00 3.79
909 942 3.063997 GCATCCTGGTACATCTTTGTTCG 59.936 47.826 0.00 0.00 38.20 3.95
914 947 5.189736 TCTGTAAGCATCCTGGTACATCTTT 59.810 40.000 0.00 0.00 38.20 2.52
917 950 4.672587 TCTGTAAGCATCCTGGTACATC 57.327 45.455 0.00 0.00 38.20 3.06
930 963 7.327518 GCTAGCTAGCTTAACTAATCTGTAAGC 59.672 40.741 33.71 15.96 45.62 3.09
948 981 6.231412 ATCGCAGATATGCTGGCTAGCTAG 62.231 50.000 22.82 22.82 46.73 3.42
951 984 1.405256 ATCGCAGATATGCTGGCTAGC 60.405 52.381 16.23 16.23 46.77 3.42
974 1008 0.743097 AAGGTGGACGCTCCGTATAC 59.257 55.000 0.00 0.00 41.37 1.47
984 1018 0.965363 CCATGGGGAAAAGGTGGACG 60.965 60.000 2.85 0.00 35.59 4.79
986 1020 0.704076 CTCCATGGGGAAAAGGTGGA 59.296 55.000 5.34 0.00 44.38 4.02
987 1021 0.409484 ACTCCATGGGGAAAAGGTGG 59.591 55.000 21.59 0.00 44.38 4.61
990 1030 1.355720 AGACACTCCATGGGGAAAAGG 59.644 52.381 21.59 4.54 44.38 3.11
1040 1080 3.515286 GCATCCTGCTGCATGCGT 61.515 61.111 14.09 0.00 46.63 5.24
1131 1180 6.458888 GCATCTGAATAAGTTTTACCAGGCTC 60.459 42.308 0.00 0.00 0.00 4.70
1133 1182 5.125417 TGCATCTGAATAAGTTTTACCAGGC 59.875 40.000 0.00 0.00 0.00 4.85
1146 1195 5.726980 AAAGCCAAAAGTGCATCTGAATA 57.273 34.783 0.00 0.00 0.00 1.75
1147 1196 4.612264 AAAGCCAAAAGTGCATCTGAAT 57.388 36.364 0.00 0.00 0.00 2.57
1149 1198 5.726980 ATAAAAGCCAAAAGTGCATCTGA 57.273 34.783 0.00 0.00 0.00 3.27
1155 1204 8.015087 GGAATTAACAATAAAAGCCAAAAGTGC 58.985 33.333 0.00 0.00 0.00 4.40
1171 1220 7.168219 AGTAGAGTGATGCAAGGAATTAACAA 58.832 34.615 0.00 0.00 0.00 2.83
1185 1234 7.495901 ACCAATTATCAGTGAGTAGAGTGATG 58.504 38.462 0.00 0.00 36.78 3.07
1238 1290 3.254166 GCTGAATGTCAGTGTTGTCCAAT 59.746 43.478 7.08 0.00 45.94 3.16
1285 1340 0.396278 GGCATTGGGGAGGAAGAAGG 60.396 60.000 0.00 0.00 0.00 3.46
1295 1350 3.699411 TCTTTCAAATTGGCATTGGGG 57.301 42.857 1.30 0.00 0.00 4.96
1380 1435 5.587844 GCATCACAGAACAAACTGGATAGAT 59.412 40.000 0.00 0.00 41.59 1.98
1514 1652 7.611467 AGAAACACATTTAATACAGGAGATGCA 59.389 33.333 0.00 0.00 0.00 3.96
1539 1677 4.168760 CGGAAAATAAAGCAGCCAGAAAG 58.831 43.478 0.00 0.00 0.00 2.62
1547 1685 5.049405 ACTGAACAGACGGAAAATAAAGCAG 60.049 40.000 8.87 0.00 0.00 4.24
1637 1775 9.810870 AATACCAAGACCTAGATTACCTAGTAG 57.189 37.037 0.00 0.00 42.63 2.57
1671 1809 4.953579 ACTGGAAGAATAGAGAGTGGAGAC 59.046 45.833 0.00 0.00 37.43 3.36
1714 1852 9.158233 TCTAAATAAACTGGAGGTAAACATTCG 57.842 33.333 0.00 0.00 0.00 3.34
1756 1894 6.579666 TCTCAAGTGGAATGGAAAATGAAG 57.420 37.500 0.00 0.00 0.00 3.02
1799 1937 7.105588 AGTAACTATGACATTGTGATTCTGCA 58.894 34.615 3.22 0.00 0.00 4.41
1832 1970 3.920144 GCATGTGATTGCTGAGAGC 57.080 52.632 0.00 0.00 42.82 4.09
1870 2008 4.142447 ACGTCTGCTCGTATTAATCACACT 60.142 41.667 0.00 0.00 42.35 3.55
1878 2016 4.163552 CAGTGAAACGTCTGCTCGTATTA 58.836 43.478 0.00 0.00 45.86 0.98
1880 2018 2.030185 ACAGTGAAACGTCTGCTCGTAT 60.030 45.455 0.00 0.00 45.86 3.06
1900 2038 1.265365 GTCAGCAGCAGAAACAGGAAC 59.735 52.381 0.00 0.00 0.00 3.62
1901 2039 1.134128 TGTCAGCAGCAGAAACAGGAA 60.134 47.619 0.00 0.00 0.00 3.36
1902 2040 0.469494 TGTCAGCAGCAGAAACAGGA 59.531 50.000 0.00 0.00 0.00 3.86
1928 2066 6.463995 AATGACTTACAAGTTTTGCTTCCA 57.536 33.333 0.00 0.00 39.88 3.53
2024 2162 9.950680 CTGCGACAGAAAAATATTAATATGGTT 57.049 29.630 8.74 6.23 32.44 3.67
2025 2163 9.120538 ACTGCGACAGAAAAATATTAATATGGT 57.879 29.630 8.74 0.00 35.18 3.55
2026 2164 9.599322 GACTGCGACAGAAAAATATTAATATGG 57.401 33.333 8.74 0.00 35.18 2.74
2046 2193 5.981915 TCATCTGAAGAATCATTAGACTGCG 59.018 40.000 0.00 0.00 34.37 5.18
2063 2210 7.767659 CCTTTCATCAGTAATCTGTTCATCTGA 59.232 37.037 0.00 0.00 41.91 3.27
2070 2217 6.881602 GGACTTCCTTTCATCAGTAATCTGTT 59.118 38.462 0.00 0.00 41.91 3.16
2071 2218 6.013379 TGGACTTCCTTTCATCAGTAATCTGT 60.013 38.462 0.00 0.00 38.62 3.41
2164 2311 2.159043 GGAAGAGCGATTGTCATGAGGA 60.159 50.000 0.00 0.00 0.00 3.71
2260 2408 2.315176 AGAACTCTCCTCGGATCATGG 58.685 52.381 0.00 0.00 0.00 3.66
2302 2453 5.070001 ACTGGAAATCGATTTGTTTCAGGA 58.930 37.500 27.27 2.19 36.34 3.86
2332 2483 4.180057 CCGCATAATATCTCCTCTCAAGC 58.820 47.826 0.00 0.00 0.00 4.01
2402 2650 8.103305 TGAGCTATAGAAATGAAACAGGAAAGT 58.897 33.333 3.21 0.00 0.00 2.66
2447 2695 9.252962 GCTAAGTATTTCTTTTGCATAATGCAT 57.747 29.630 0.00 0.00 43.88 3.96
2471 3418 7.912056 ATATAAATGTCAATACGATGCAGCT 57.088 32.000 0.00 0.00 0.00 4.24
2596 3543 6.199719 GGCAGAAAACAGAAATCAGAAAGTTG 59.800 38.462 0.00 0.00 0.00 3.16
2739 3687 6.705825 AGCCAAACCATAACAAAACAGATTTC 59.294 34.615 0.00 0.00 0.00 2.17
2866 3814 4.813027 ACCAGTTCACATGCATCAATTTC 58.187 39.130 0.00 0.00 0.00 2.17
3232 4235 9.973450 GAAGCTATACTCTGAATCAACTATCAA 57.027 33.333 0.00 0.00 0.00 2.57
3233 4236 8.293157 CGAAGCTATACTCTGAATCAACTATCA 58.707 37.037 0.00 0.00 0.00 2.15
3267 4277 5.543790 TGGCATAGCAGGATAGACAATTCTA 59.456 40.000 0.00 0.00 38.76 2.10
3315 4325 6.061441 ACATCAAGAAACACATGGTTGTAGA 58.939 36.000 0.00 0.00 40.35 2.59
3322 4332 5.119588 GCAATGAACATCAAGAAACACATGG 59.880 40.000 0.00 0.00 0.00 3.66
3325 4335 4.619973 GGCAATGAACATCAAGAAACACA 58.380 39.130 0.00 0.00 0.00 3.72
3789 5667 7.995663 ACAGTATCTATCTCTCCTATGTCCTT 58.004 38.462 0.00 0.00 0.00 3.36
3803 5681 6.095720 GGCATGGTCCTAGTACAGTATCTATC 59.904 46.154 0.00 0.00 0.00 2.08
3843 5721 8.934507 TCAACGAAAACCTAATCACAATTTTT 57.065 26.923 0.00 0.00 0.00 1.94
3864 5742 9.301153 CAACTAATTTGGCTATTAACCATCAAC 57.699 33.333 0.00 0.00 36.96 3.18
3874 5752 9.632638 AGATGACATACAACTAATTTGGCTATT 57.367 29.630 0.00 0.00 39.84 1.73
3912 5798 6.183360 CCTTGTTTCTCACCAATGTTTACTGT 60.183 38.462 0.00 0.00 0.00 3.55
3926 5812 2.231964 GCATGCCATTCCTTGTTTCTCA 59.768 45.455 6.36 0.00 0.00 3.27
4048 7870 9.812347 TCAGATGAATGCTTAATGGGTATTAAT 57.188 29.630 0.00 0.00 37.92 1.40
4055 7887 6.835819 ATGATCAGATGAATGCTTAATGGG 57.164 37.500 0.09 0.00 0.00 4.00
4085 7917 6.470160 CACAGAGTAAGTGAAATAATGCGAC 58.530 40.000 0.00 0.00 39.30 5.19
4265 9001 1.963515 GGTTGAGAGCCCACAAAACAT 59.036 47.619 0.00 0.00 0.00 2.71
4614 9915 3.056107 TCCCTAAATGACCAAGTGACTCG 60.056 47.826 0.00 0.00 0.00 4.18
4621 9922 6.994221 ACTATACGATCCCTAAATGACCAAG 58.006 40.000 0.00 0.00 0.00 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.