Multiple sequence alignment - TraesCS7D01G157700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G157700 chr7D 100.000 6202 0 0 772 6973 105434498 105428297 0.000000e+00 11454.0
1 TraesCS7D01G157700 chr7D 100.000 558 0 0 1 558 105435269 105434712 0.000000e+00 1031.0
2 TraesCS7D01G157700 chr7D 85.956 769 48 23 5872 6618 105418214 105417484 0.000000e+00 767.0
3 TraesCS7D01G157700 chr7D 77.096 489 46 39 2618 3041 243335249 243334762 9.100000e-54 222.0
4 TraesCS7D01G157700 chr7B 92.345 3736 166 48 826 4515 64036846 64033185 0.000000e+00 5204.0
5 TraesCS7D01G157700 chr7B 87.642 2549 149 68 4513 6973 64033153 64030683 0.000000e+00 2809.0
6 TraesCS7D01G157700 chr7B 76.258 497 49 37 2610 3041 218820252 218819760 4.270000e-47 200.0
7 TraesCS7D01G157700 chr7B 87.861 173 5 3 339 495 64037425 64037253 9.230000e-44 189.0
8 TraesCS7D01G157700 chr7B 90.226 133 11 2 155 286 64037554 64037423 9.300000e-39 172.0
9 TraesCS7D01G157700 chr7A 95.219 2008 75 7 2047 4042 110256949 110254951 0.000000e+00 3157.0
10 TraesCS7D01G157700 chr7A 93.946 1949 76 13 4513 6430 110254200 110252263 0.000000e+00 2907.0
11 TraesCS7D01G157700 chr7A 92.815 1197 50 14 772 1964 110258120 110256956 0.000000e+00 1701.0
12 TraesCS7D01G157700 chr7A 91.202 466 7 12 4051 4515 110254664 110254232 2.780000e-168 603.0
13 TraesCS7D01G157700 chr7A 89.815 432 17 8 151 555 110258576 110258145 4.790000e-146 529.0
14 TraesCS7D01G157700 chr7A 95.468 331 14 1 5839 6168 110243201 110242871 1.720000e-145 527.0
15 TraesCS7D01G157700 chr7A 81.818 319 42 12 4717 5029 100768535 100768227 3.230000e-63 254.0
16 TraesCS7D01G157700 chr7A 79.927 274 30 15 2610 2859 258415203 258414931 2.000000e-40 178.0
17 TraesCS7D01G157700 chr7A 85.987 157 19 3 1 154 110259207 110259051 1.560000e-36 165.0
18 TraesCS7D01G157700 chr7A 91.509 106 9 0 6228 6333 110238109 110238004 5.640000e-31 147.0
19 TraesCS7D01G157700 chr7A 90.566 106 10 0 6228 6333 110226337 110226232 2.620000e-29 141.0
20 TraesCS7D01G157700 chr7A 85.156 128 15 2 6446 6569 110236712 110236585 2.040000e-25 128.0
21 TraesCS7D01G157700 chr7A 82.051 156 21 5 6446 6596 110224800 110224647 7.340000e-25 126.0
22 TraesCS7D01G157700 chr7A 85.366 123 12 3 5183 5302 10208716 10208835 9.500000e-24 122.0
23 TraesCS7D01G157700 chr3D 81.486 821 123 21 4523 5334 16003842 16004642 0.000000e+00 647.0
24 TraesCS7D01G157700 chr3D 94.253 87 5 0 3872 3958 288685200 288685114 4.390000e-27 134.0
25 TraesCS7D01G157700 chr5D 79.540 391 53 19 4717 5091 50863192 50862813 3.230000e-63 254.0
26 TraesCS7D01G157700 chr5D 76.485 421 57 33 2633 3025 50319726 50320132 2.570000e-44 191.0
27 TraesCS7D01G157700 chr5D 78.992 119 19 4 2426 2538 457674167 457674285 7.500000e-10 76.8
28 TraesCS7D01G157700 chr2A 81.455 275 40 9 4717 4985 735312606 735312875 1.520000e-51 215.0
29 TraesCS7D01G157700 chr6A 76.994 326 40 21 4827 5138 532654593 532654897 3.370000e-33 154.0
30 TraesCS7D01G157700 chr6A 82.716 162 25 3 5180 5339 532655546 532655706 2.620000e-29 141.0
31 TraesCS7D01G157700 chr6A 94.915 59 1 2 2814 2872 25759246 25759302 2.680000e-14 91.6
32 TraesCS7D01G157700 chr6A 84.337 83 10 3 2465 2544 32531652 32531570 2.090000e-10 78.7
33 TraesCS7D01G157700 chr2D 82.993 147 23 2 5183 5328 47718757 47718612 1.580000e-26 132.0
34 TraesCS7D01G157700 chr2D 95.652 46 1 1 4827 4872 648385492 648385536 9.700000e-09 73.1
35 TraesCS7D01G157700 chr6D 81.699 153 26 2 5180 5331 387647181 387647332 7.340000e-25 126.0
36 TraesCS7D01G157700 chr5B 82.114 123 20 2 2413 2535 276247739 276247859 3.440000e-18 104.0
37 TraesCS7D01G157700 chr5B 81.633 98 15 3 2444 2538 311390539 311390636 2.090000e-10 78.7
38 TraesCS7D01G157700 chr1A 84.466 103 11 4 2755 2852 288511967 288511865 5.760000e-16 97.1
39 TraesCS7D01G157700 chr3A 94.915 59 1 2 2814 2872 441006568 441006512 2.680000e-14 91.6
40 TraesCS7D01G157700 chr3B 83.673 98 13 3 2444 2538 570443603 570443700 9.630000e-14 89.8
41 TraesCS7D01G157700 chr2B 89.333 75 3 3 5070 5139 12056030 12055956 9.630000e-14 89.8
42 TraesCS7D01G157700 chr2B 84.337 83 10 3 2465 2544 364848572 364848490 2.090000e-10 78.7
43 TraesCS7D01G157700 chr5A 80.909 110 18 3 2424 2532 327089461 327089568 4.480000e-12 84.2
44 TraesCS7D01G157700 chr1B 92.308 52 4 0 1751 1802 49776372 49776321 2.700000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G157700 chr7D 105428297 105435269 6972 True 6242.500000 11454 100.000000 1 6973 2 chr7D.!!$R3 6972
1 TraesCS7D01G157700 chr7D 105417484 105418214 730 True 767.000000 767 85.956000 5872 6618 1 chr7D.!!$R1 746
2 TraesCS7D01G157700 chr7B 64030683 64037554 6871 True 2093.500000 5204 89.518500 155 6973 4 chr7B.!!$R2 6818
3 TraesCS7D01G157700 chr7A 110252263 110259207 6944 True 1510.333333 3157 91.497333 1 6430 6 chr7A.!!$R6 6429
4 TraesCS7D01G157700 chr3D 16003842 16004642 800 False 647.000000 647 81.486000 4523 5334 1 chr3D.!!$F1 811

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
480 992 0.458543 GAGCACGAATCTCGAGGCAA 60.459 55.0 13.56 0.00 43.74 4.52 F
1100 1721 0.461339 CGATTGGGTTCGATTCGGGT 60.461 55.0 6.18 0.00 41.62 5.28 F
2418 3067 0.035439 AAAAGCACGGATCCGGACAT 60.035 50.0 35.87 18.59 44.69 3.06 F
2647 3296 0.329596 GCCCTTCACTCTCACCCATT 59.670 55.0 0.00 0.00 0.00 3.16 F
3140 3790 0.392998 ACGGCAAATCGGCTGAATCT 60.393 50.0 0.00 0.00 42.91 2.40 F
4380 5312 0.620556 TGTCTTCTCATTCCCAGGCC 59.379 55.0 0.00 0.00 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1383 2004 0.392461 GCCCATAACTCCACGAAGCA 60.392 55.0 0.00 0.00 0.00 3.91 R
2936 3585 0.767375 AAGGAACAAGCTGCTCCAGA 59.233 50.0 1.00 0.00 35.13 3.86 R
4364 5296 0.106819 CCAGGCCTGGGAATGAGAAG 60.107 60.0 40.24 13.66 46.81 2.85 R
4376 5308 0.178921 TGAGAAGACACTCCAGGCCT 60.179 55.0 0.00 0.00 36.22 5.19 R
4386 5318 0.620556 GGCCTGGGAATGAGAAGACA 59.379 55.0 0.00 0.00 0.00 3.41 R
6192 7209 0.387239 GATTTGCGCGGCTCAAAACT 60.387 50.0 20.37 6.73 37.04 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 0.813184 CCAATCAAGAGCCGTGCATT 59.187 50.000 0.00 0.00 0.00 3.56
47 48 0.964860 TGCATTGGACATTCCCACCG 60.965 55.000 0.00 0.00 35.03 4.94
225 707 1.660575 GTGACGACCAGTGTGACGG 60.661 63.158 0.00 0.00 0.00 4.79
231 713 3.991051 CCAGTGTGACGGAGCGGT 61.991 66.667 0.00 0.00 0.00 5.68
312 800 6.071896 GCTGGAAAGCTGTAAATTTAACTCCT 60.072 38.462 0.00 0.00 0.00 3.69
328 816 1.072965 CTCCTCCCTTTTGACAGCACT 59.927 52.381 0.00 0.00 0.00 4.40
333 821 1.264288 CCCTTTTGACAGCACTCGAAC 59.736 52.381 0.00 0.00 0.00 3.95
335 823 2.213499 CTTTTGACAGCACTCGAACCT 58.787 47.619 0.00 0.00 0.00 3.50
402 902 0.600255 AGCGTGGACCTGAACGAAAG 60.600 55.000 7.01 0.00 42.32 2.62
480 992 0.458543 GAGCACGAATCTCGAGGCAA 60.459 55.000 13.56 0.00 43.74 4.52
523 1035 1.074623 CAGCTGATCTCCCCTCCCT 60.075 63.158 8.42 0.00 0.00 4.20
547 1059 2.734673 CTCTTTCTCCGCACGCTGC 61.735 63.158 0.00 0.00 40.69 5.25
878 1487 1.658717 CGATTAGCTGCGACGGGAG 60.659 63.158 0.00 0.00 34.23 4.30
1098 1719 1.209128 CTCGATTGGGTTCGATTCGG 58.791 55.000 6.18 0.00 46.16 4.30
1100 1721 0.461339 CGATTGGGTTCGATTCGGGT 60.461 55.000 6.18 0.00 41.62 5.28
1134 1755 1.228459 GCTTCGGTTTTGGGAGGGT 60.228 57.895 0.00 0.00 0.00 4.34
1261 1882 6.252281 CGCATGTGTATTTACCGTAATTTGT 58.748 36.000 0.00 0.00 0.00 2.83
1263 1884 7.253158 CGCATGTGTATTTACCGTAATTTGTTG 60.253 37.037 0.00 0.00 0.00 3.33
1273 1894 6.627395 ACCGTAATTTGTTGTGATGAGAAA 57.373 33.333 0.00 0.00 0.00 2.52
1358 1979 2.096819 GCGTGGGTATGTTGTGGTAATG 59.903 50.000 0.00 0.00 0.00 1.90
1383 2004 1.730547 GCTTTTGCATCGCGCTTGT 60.731 52.632 5.56 0.00 46.58 3.16
1389 2010 2.276244 CATCGCGCTTGTGCTTCG 60.276 61.111 5.56 0.00 36.97 3.79
1392 2013 4.724697 CGCGCTTGTGCTTCGTGG 62.725 66.667 5.56 0.00 36.97 4.94
1406 2027 1.199615 TCGTGGAGTTATGGGCATGA 58.800 50.000 0.00 0.00 0.00 3.07
1487 2118 1.423541 TGGCCACCTGTTGTATCTGTT 59.576 47.619 0.00 0.00 0.00 3.16
1488 2119 1.812571 GGCCACCTGTTGTATCTGTTG 59.187 52.381 0.00 0.00 0.00 3.33
1489 2120 2.504367 GCCACCTGTTGTATCTGTTGT 58.496 47.619 0.00 0.00 0.00 3.32
1490 2121 3.558321 GGCCACCTGTTGTATCTGTTGTA 60.558 47.826 0.00 0.00 0.00 2.41
1491 2122 4.261801 GCCACCTGTTGTATCTGTTGTAT 58.738 43.478 0.00 0.00 0.00 2.29
1492 2123 4.332819 GCCACCTGTTGTATCTGTTGTATC 59.667 45.833 0.00 0.00 0.00 2.24
1493 2124 5.734720 CCACCTGTTGTATCTGTTGTATCT 58.265 41.667 0.00 0.00 0.00 1.98
1494 2125 5.582269 CCACCTGTTGTATCTGTTGTATCTG 59.418 44.000 0.00 0.00 0.00 2.90
1495 2126 6.166279 CACCTGTTGTATCTGTTGTATCTGT 58.834 40.000 0.00 0.00 0.00 3.41
1496 2127 6.650807 CACCTGTTGTATCTGTTGTATCTGTT 59.349 38.462 0.00 0.00 0.00 3.16
1497 2128 6.650807 ACCTGTTGTATCTGTTGTATCTGTTG 59.349 38.462 0.00 0.00 0.00 3.33
1498 2129 6.650807 CCTGTTGTATCTGTTGTATCTGTTGT 59.349 38.462 0.00 0.00 0.00 3.32
1499 2130 7.148573 CCTGTTGTATCTGTTGTATCTGTTGTC 60.149 40.741 0.00 0.00 0.00 3.18
1500 2131 7.441836 TGTTGTATCTGTTGTATCTGTTGTCT 58.558 34.615 0.00 0.00 0.00 3.41
1551 2182 7.861629 TGAGAATCCTGTAATGTCAATTAGGT 58.138 34.615 0.00 0.00 0.00 3.08
1590 2221 2.366972 GCTTCCCCTAGCCCCTGA 60.367 66.667 0.00 0.00 35.06 3.86
1672 2303 0.182775 AGCCAAAGTCGGGTGTTCTT 59.817 50.000 0.00 0.00 34.81 2.52
1968 2604 4.261322 GGCATTGTCTCGCATCATTATGTT 60.261 41.667 0.00 0.00 35.38 2.71
2186 2825 8.925788 TTAATTGTTATTTTGAAATGCAACGC 57.074 26.923 0.00 0.00 35.91 4.84
2199 2838 1.281353 CAACGCTGCGCTTTTGGTA 59.719 52.632 23.51 0.00 0.00 3.25
2200 2839 0.317436 CAACGCTGCGCTTTTGGTAA 60.317 50.000 23.51 0.00 0.00 2.85
2203 2842 1.000717 ACGCTGCGCTTTTGGTAAATT 60.001 42.857 23.51 0.00 0.00 1.82
2204 2843 1.386412 CGCTGCGCTTTTGGTAAATTG 59.614 47.619 9.88 0.00 0.00 2.32
2205 2844 2.403259 GCTGCGCTTTTGGTAAATTGT 58.597 42.857 9.73 0.00 0.00 2.71
2206 2845 2.799978 GCTGCGCTTTTGGTAAATTGTT 59.200 40.909 9.73 0.00 0.00 2.83
2225 2873 2.472695 TGAGTTGCTTATTCCGCTGT 57.527 45.000 0.00 0.00 0.00 4.40
2412 3061 1.132453 GCACCTAAAAAGCACGGATCC 59.868 52.381 0.00 0.00 0.00 3.36
2418 3067 0.035439 AAAAGCACGGATCCGGACAT 60.035 50.000 35.87 18.59 44.69 3.06
2608 3257 8.587608 TGCTCAATGAGAAACAAAGGATATTTT 58.412 29.630 15.38 0.00 0.00 1.82
2647 3296 0.329596 GCCCTTCACTCTCACCCATT 59.670 55.000 0.00 0.00 0.00 3.16
2649 3298 1.457346 CCTTCACTCTCACCCATTGC 58.543 55.000 0.00 0.00 0.00 3.56
2682 3331 2.362369 CGGTGGGGCTCTCAGATGT 61.362 63.158 0.00 0.00 0.00 3.06
2708 3357 2.622942 CTCCCTAACAGCAAGCAAACAA 59.377 45.455 0.00 0.00 0.00 2.83
2768 3417 6.930722 AGCTAATTTAAAACACAAGCAGCAAT 59.069 30.769 0.00 0.00 0.00 3.56
2966 3615 2.287009 GCTTGTTCCTTTTGTGTCGAGG 60.287 50.000 0.00 0.00 0.00 4.63
3015 3665 0.394565 ATCGGGCTGAGGCTGTTATC 59.605 55.000 14.88 0.00 38.73 1.75
3054 3704 1.471676 CGTATCCCAGCTGTGTCCTTC 60.472 57.143 13.81 0.00 0.00 3.46
3055 3705 1.834263 GTATCCCAGCTGTGTCCTTCT 59.166 52.381 13.81 0.00 0.00 2.85
3110 3760 4.595538 GCGTGTCACCGTGTCCCA 62.596 66.667 0.00 0.00 0.00 4.37
3140 3790 0.392998 ACGGCAAATCGGCTGAATCT 60.393 50.000 0.00 0.00 42.91 2.40
3143 3793 0.737219 GCAAATCGGCTGAATCTGCT 59.263 50.000 15.83 0.00 0.00 4.24
3251 3901 3.140325 TCCTTGCTCGTCTTCCAATTT 57.860 42.857 0.00 0.00 0.00 1.82
3269 3919 7.571025 TCCAATTTTACTCCCTACATTCCTAC 58.429 38.462 0.00 0.00 0.00 3.18
3289 3939 5.350640 CCTACGAAGAAGGCGTAAATTTCTT 59.649 40.000 0.00 0.00 42.79 2.52
3315 3965 0.777446 AACCCCAAGGAAAGCTAGCA 59.223 50.000 18.83 0.00 36.73 3.49
3360 4010 4.821805 TGCCTCTAATTAATTACTGCCTGC 59.178 41.667 3.71 3.10 0.00 4.85
3373 4023 3.365265 CCTGCCGTCTTTGCCCAC 61.365 66.667 0.00 0.00 0.00 4.61
3374 4024 3.365265 CTGCCGTCTTTGCCCACC 61.365 66.667 0.00 0.00 0.00 4.61
3375 4025 4.196778 TGCCGTCTTTGCCCACCA 62.197 61.111 0.00 0.00 0.00 4.17
3376 4026 2.676471 GCCGTCTTTGCCCACCAT 60.676 61.111 0.00 0.00 0.00 3.55
3443 4093 2.828868 CCCTTGGCCTATAGCGCA 59.171 61.111 11.47 0.00 45.17 6.09
3643 4296 2.292323 ACTCCCTCTTCATAGGAACGGT 60.292 50.000 0.00 0.00 39.15 4.83
3718 4371 1.867233 TCGCTCACTTTCAAGCTTGTC 59.133 47.619 25.19 5.73 36.35 3.18
3729 4382 6.939163 ACTTTCAAGCTTGTCATCAGACTATT 59.061 34.615 25.19 0.00 45.20 1.73
3731 4384 7.834068 TTCAAGCTTGTCATCAGACTATTAC 57.166 36.000 25.19 0.00 45.20 1.89
4008 4661 2.545106 CAGCATTGGTTGTGCCTTTTTC 59.455 45.455 0.00 0.00 43.50 2.29
4217 5149 7.944729 AAGCACCATACTGTAATCAGATTTT 57.055 32.000 0.00 0.00 43.76 1.82
4357 5289 5.950758 ATACCTCGATGAGTGAGTGATAC 57.049 43.478 0.00 0.00 0.00 2.24
4363 5295 5.429130 TCGATGAGTGAGTGATACTAGTGT 58.571 41.667 5.39 0.00 0.00 3.55
4364 5296 5.524281 TCGATGAGTGAGTGATACTAGTGTC 59.476 44.000 12.39 12.39 0.00 3.67
4365 5297 5.525745 CGATGAGTGAGTGATACTAGTGTCT 59.474 44.000 18.99 1.38 0.00 3.41
4366 5298 6.037720 CGATGAGTGAGTGATACTAGTGTCTT 59.962 42.308 18.99 8.66 0.00 3.01
4367 5299 6.745159 TGAGTGAGTGATACTAGTGTCTTC 57.255 41.667 18.99 16.00 0.00 2.87
4368 5300 6.477253 TGAGTGAGTGATACTAGTGTCTTCT 58.523 40.000 18.99 16.18 0.00 2.85
4369 5301 6.596106 TGAGTGAGTGATACTAGTGTCTTCTC 59.404 42.308 23.81 23.81 0.00 2.87
4370 5302 6.477253 AGTGAGTGATACTAGTGTCTTCTCA 58.523 40.000 26.56 26.56 33.94 3.27
4371 5303 7.116075 AGTGAGTGATACTAGTGTCTTCTCAT 58.884 38.462 29.52 21.83 36.19 2.90
4372 5304 7.613801 AGTGAGTGATACTAGTGTCTTCTCATT 59.386 37.037 29.52 26.05 36.19 2.57
4373 5305 7.913297 GTGAGTGATACTAGTGTCTTCTCATTC 59.087 40.741 29.52 21.54 36.19 2.67
4374 5306 7.067615 TGAGTGATACTAGTGTCTTCTCATTCC 59.932 40.741 26.56 13.58 32.75 3.01
4375 5307 6.322712 AGTGATACTAGTGTCTTCTCATTCCC 59.677 42.308 18.99 0.00 0.00 3.97
4376 5308 6.096987 GTGATACTAGTGTCTTCTCATTCCCA 59.903 42.308 18.99 0.00 0.00 4.37
4377 5309 6.322456 TGATACTAGTGTCTTCTCATTCCCAG 59.678 42.308 18.99 0.00 0.00 4.45
4378 5310 3.772025 ACTAGTGTCTTCTCATTCCCAGG 59.228 47.826 0.00 0.00 0.00 4.45
4379 5311 1.280421 AGTGTCTTCTCATTCCCAGGC 59.720 52.381 0.00 0.00 0.00 4.85
4380 5312 0.620556 TGTCTTCTCATTCCCAGGCC 59.379 55.000 0.00 0.00 0.00 5.19
4381 5313 0.915364 GTCTTCTCATTCCCAGGCCT 59.085 55.000 0.00 0.00 0.00 5.19
4382 5314 0.914644 TCTTCTCATTCCCAGGCCTG 59.085 55.000 26.87 26.87 0.00 4.85
4418 5350 0.557729 CCAGGCCTGGGGAATATGTT 59.442 55.000 40.24 0.00 46.81 2.71
4421 5353 2.695147 CAGGCCTGGGGAATATGTTTTC 59.305 50.000 26.14 0.00 0.00 2.29
4432 5364 7.035612 GGGGAATATGTTTTCTCATTTGACAC 58.964 38.462 0.00 0.00 0.00 3.67
4569 5535 5.160641 TCAACCGCAATTTTCTTATTCTGC 58.839 37.500 0.00 0.00 0.00 4.26
4826 5793 6.763610 GGACTCCTCTCATTTATGGTAAGTTG 59.236 42.308 0.00 0.00 0.00 3.16
4914 5882 9.113838 ACATACATATTTTGGAGATGAACTGTC 57.886 33.333 0.00 0.00 0.00 3.51
4940 5908 6.925610 TCAAGCCTAGCAATTTGTACTATG 57.074 37.500 0.00 0.00 0.00 2.23
5346 6323 6.999950 TGCTTACAACTGTGAGAGGTAAATA 58.000 36.000 5.86 0.00 33.98 1.40
5419 6397 5.649831 AGGTTAATCCTTCAGATGCAAGAAC 59.350 40.000 0.00 0.00 45.67 3.01
5422 6400 7.500559 GGTTAATCCTTCAGATGCAAGAACTAT 59.499 37.037 0.00 0.00 34.56 2.12
5424 6402 5.946942 TCCTTCAGATGCAAGAACTATCT 57.053 39.130 0.00 0.00 37.57 1.98
5434 6412 5.308014 TGCAAGAACTATCTGAAGCTTTCA 58.692 37.500 0.00 0.00 35.59 2.69
5556 6558 9.249457 TCAGCATATCTAATTCACTTTTAGACG 57.751 33.333 0.00 0.00 38.23 4.18
5586 6588 6.369615 ACATTTGTTGGCTTATTCTGAAATGC 59.630 34.615 0.00 0.00 34.40 3.56
5654 6658 3.320610 TTCCCTGTTCCAAACCATGAA 57.679 42.857 0.00 0.00 0.00 2.57
5670 6674 5.930135 ACCATGAAGTTTACTCAAGTCTGT 58.070 37.500 0.00 0.00 0.00 3.41
5746 6750 5.250200 TGTTGAGAAGTACAACCAACAACT 58.750 37.500 15.68 0.00 44.49 3.16
5765 6769 4.706842 ACTAGAAAAGGAGCAAACTGGA 57.293 40.909 0.00 0.00 0.00 3.86
5809 6813 3.011517 TGCCCCAGCTCCTTCTCC 61.012 66.667 0.00 0.00 40.80 3.71
5816 6820 3.780173 GCTCCTTCTCCTGCCGCT 61.780 66.667 0.00 0.00 0.00 5.52
5821 6825 2.922503 TTCTCCTGCCGCTGTCCA 60.923 61.111 0.00 0.00 0.00 4.02
6147 7161 4.087182 TCCCTTGACGAGAAACTCTACAT 58.913 43.478 0.00 0.00 0.00 2.29
6168 7182 4.691860 TGCTGCTTTATTTGAGCTTCTC 57.308 40.909 0.00 0.00 40.75 2.87
6171 7185 3.674997 TGCTTTATTTGAGCTTCTCGGT 58.325 40.909 0.00 0.00 40.75 4.69
6173 7187 5.428253 TGCTTTATTTGAGCTTCTCGGTAT 58.572 37.500 0.00 0.00 40.75 2.73
6176 7190 7.011109 TGCTTTATTTGAGCTTCTCGGTATTAC 59.989 37.037 0.00 0.00 40.75 1.89
6177 7191 7.518529 GCTTTATTTGAGCTTCTCGGTATTACC 60.519 40.741 2.50 2.50 37.18 2.85
6205 7222 1.529438 TGTCTTTAGTTTTGAGCCGCG 59.471 47.619 0.00 0.00 0.00 6.46
6207 7224 0.237235 CTTTAGTTTTGAGCCGCGCA 59.763 50.000 8.75 0.00 0.00 6.09
6212 7229 1.080839 TTTTGAGCCGCGCAAATCC 60.081 52.632 20.81 0.00 33.67 3.01
6231 7255 6.840780 AATCCTAACATTGCTTACTTTGCT 57.159 33.333 0.00 0.00 0.00 3.91
6236 7260 2.095567 ACATTGCTTACTTTGCTCGCTG 60.096 45.455 0.00 0.00 0.00 5.18
6254 7278 4.870426 TCGCTGATGTTTATCTTCAAGGTC 59.130 41.667 0.00 0.00 34.31 3.85
6323 7347 2.887151 AGGGCTTGCTAATTGTGACT 57.113 45.000 0.00 0.00 0.00 3.41
6325 7349 2.040278 AGGGCTTGCTAATTGTGACTCA 59.960 45.455 0.00 0.00 0.00 3.41
6356 7382 0.815734 CAATGCTCTTTCTGCTGGGG 59.184 55.000 0.00 0.00 0.00 4.96
6376 7402 1.614413 GTATCTCTGGGTGATCCGTCC 59.386 57.143 0.00 0.00 38.76 4.79
6388 7414 0.328258 ATCCGTCCCTTTCCAAGTGG 59.672 55.000 0.00 0.00 0.00 4.00
6392 7418 1.152830 TCCCTTTCCAAGTGGTGCC 59.847 57.895 0.00 0.00 36.34 5.01
6427 7453 5.262588 CCAAATTTGGCCCTCTGTATTAC 57.737 43.478 23.81 0.00 42.21 1.89
6428 7454 4.956075 CCAAATTTGGCCCTCTGTATTACT 59.044 41.667 23.81 0.00 42.21 2.24
6429 7455 5.422012 CCAAATTTGGCCCTCTGTATTACTT 59.578 40.000 23.81 0.00 42.21 2.24
6430 7456 6.070824 CCAAATTTGGCCCTCTGTATTACTTT 60.071 38.462 23.81 0.00 42.21 2.66
6431 7457 7.386059 CAAATTTGGCCCTCTGTATTACTTTT 58.614 34.615 10.49 0.00 0.00 2.27
6432 7458 7.553504 AATTTGGCCCTCTGTATTACTTTTT 57.446 32.000 0.00 0.00 0.00 1.94
6478 7504 2.290896 TGGCTAGCTGCTTATTTGGTGT 60.291 45.455 15.72 0.00 42.39 4.16
6479 7505 2.755103 GGCTAGCTGCTTATTTGGTGTT 59.245 45.455 15.72 0.00 42.39 3.32
6480 7506 3.181496 GGCTAGCTGCTTATTTGGTGTTC 60.181 47.826 15.72 0.00 42.39 3.18
6481 7507 3.440173 GCTAGCTGCTTATTTGGTGTTCA 59.560 43.478 7.79 0.00 38.95 3.18
6546 7573 2.021355 CAGCTTTTCTGGAGAGCGAT 57.979 50.000 0.00 0.00 41.19 4.58
6561 7588 2.423892 GAGCGATCTGTGTTGGAGTCTA 59.576 50.000 0.00 0.00 0.00 2.59
6562 7589 2.826128 AGCGATCTGTGTTGGAGTCTAA 59.174 45.455 0.00 0.00 0.00 2.10
6565 7592 4.268884 GCGATCTGTGTTGGAGTCTAATTC 59.731 45.833 0.00 0.00 0.00 2.17
6573 7600 1.271379 TGGAGTCTAATTCGCACACGT 59.729 47.619 0.00 0.00 41.18 4.49
6574 7601 1.654105 GGAGTCTAATTCGCACACGTG 59.346 52.381 15.48 15.48 41.18 4.49
6575 7602 2.592194 GAGTCTAATTCGCACACGTGA 58.408 47.619 25.01 0.00 41.18 4.35
6576 7603 3.179830 GAGTCTAATTCGCACACGTGAT 58.820 45.455 25.01 0.89 41.18 3.06
6577 7604 3.179830 AGTCTAATTCGCACACGTGATC 58.820 45.455 25.01 11.97 41.18 2.92
6578 7605 2.921121 GTCTAATTCGCACACGTGATCA 59.079 45.455 25.01 1.11 41.18 2.92
6579 7606 2.921121 TCTAATTCGCACACGTGATCAC 59.079 45.455 25.01 16.21 41.18 3.06
6580 7607 1.507562 AATTCGCACACGTGATCACA 58.492 45.000 25.01 3.69 41.18 3.58
6581 7608 0.790207 ATTCGCACACGTGATCACAC 59.210 50.000 25.01 7.98 42.88 3.82
6608 7635 2.639065 GGATGCCCACTTCAATTACGA 58.361 47.619 0.00 0.00 0.00 3.43
6618 7645 4.568359 CACTTCAATTACGATGACCTGAGG 59.432 45.833 0.00 0.00 0.00 3.86
6620 7647 3.371034 TCAATTACGATGACCTGAGGGA 58.629 45.455 2.38 0.00 36.25 4.20
6622 7649 1.481871 TTACGATGACCTGAGGGACC 58.518 55.000 2.38 0.00 36.25 4.46
6623 7650 0.629596 TACGATGACCTGAGGGACCT 59.370 55.000 2.38 0.00 36.25 3.85
6624 7651 0.972983 ACGATGACCTGAGGGACCTG 60.973 60.000 2.38 0.00 36.25 4.00
6635 7685 5.543667 CCTGAGGGACCTGAACTGAAAGTA 61.544 50.000 0.00 0.00 40.46 2.24
6651 7701 4.689612 AAAGTAGGTCTGCTTTCTCACA 57.310 40.909 7.98 0.00 40.62 3.58
6659 7709 4.156556 GGTCTGCTTTCTCACATTTGCATA 59.843 41.667 0.00 0.00 0.00 3.14
6663 7713 8.777413 GTCTGCTTTCTCACATTTGCATATATA 58.223 33.333 0.00 0.00 0.00 0.86
6665 7715 7.575365 TGCTTTCTCACATTTGCATATATACG 58.425 34.615 0.00 0.00 0.00 3.06
6666 7716 7.440856 TGCTTTCTCACATTTGCATATATACGA 59.559 33.333 0.00 0.00 0.00 3.43
6667 7717 8.446273 GCTTTCTCACATTTGCATATATACGAT 58.554 33.333 0.00 0.00 0.00 3.73
6671 7721 9.487790 TCTCACATTTGCATATATACGATTCAA 57.512 29.630 0.00 0.00 0.00 2.69
6673 7723 8.229811 TCACATTTGCATATATACGATTCAAGC 58.770 33.333 0.00 0.00 0.00 4.01
6674 7724 8.016801 CACATTTGCATATATACGATTCAAGCA 58.983 33.333 0.00 0.00 0.00 3.91
6675 7725 8.567104 ACATTTGCATATATACGATTCAAGCAA 58.433 29.630 0.00 0.00 37.64 3.91
6676 7726 9.058424 CATTTGCATATATACGATTCAAGCAAG 57.942 33.333 0.00 0.00 40.07 4.01
6677 7727 6.169419 TGCATATATACGATTCAAGCAAGC 57.831 37.500 0.00 0.00 0.00 4.01
6688 7738 0.947244 CAAGCAAGCGAAACTCCTGT 59.053 50.000 0.00 0.00 0.00 4.00
6689 7739 2.143122 CAAGCAAGCGAAACTCCTGTA 58.857 47.619 0.00 0.00 0.00 2.74
6691 7741 3.059352 AGCAAGCGAAACTCCTGTAAT 57.941 42.857 0.00 0.00 0.00 1.89
6692 7742 3.412386 AGCAAGCGAAACTCCTGTAATT 58.588 40.909 0.00 0.00 0.00 1.40
6693 7743 3.437049 AGCAAGCGAAACTCCTGTAATTC 59.563 43.478 0.00 0.00 0.00 2.17
6694 7744 3.437049 GCAAGCGAAACTCCTGTAATTCT 59.563 43.478 0.00 0.00 0.00 2.40
6696 7746 5.220491 GCAAGCGAAACTCCTGTAATTCTAG 60.220 44.000 0.00 0.00 0.00 2.43
6697 7747 5.012328 AGCGAAACTCCTGTAATTCTAGG 57.988 43.478 2.25 2.25 35.34 3.02
6699 7749 5.364157 AGCGAAACTCCTGTAATTCTAGGAT 59.636 40.000 10.16 0.00 41.96 3.24
6700 7750 6.049790 GCGAAACTCCTGTAATTCTAGGATT 58.950 40.000 10.16 0.92 41.96 3.01
6701 7751 6.539103 GCGAAACTCCTGTAATTCTAGGATTT 59.461 38.462 0.40 8.65 41.96 2.17
6702 7752 7.065923 GCGAAACTCCTGTAATTCTAGGATTTT 59.934 37.037 18.28 18.28 44.02 1.82
6703 7753 8.391106 CGAAACTCCTGTAATTCTAGGATTTTG 58.609 37.037 21.04 16.27 42.48 2.44
6705 7755 9.807921 AAACTCCTGTAATTCTAGGATTTTGAA 57.192 29.630 17.86 0.00 41.53 2.69
6707 7757 9.401058 ACTCCTGTAATTCTAGGATTTTGAATG 57.599 33.333 0.40 1.38 41.96 2.67
6708 7758 9.618890 CTCCTGTAATTCTAGGATTTTGAATGA 57.381 33.333 0.40 0.00 41.96 2.57
6709 7759 9.396022 TCCTGTAATTCTAGGATTTTGAATGAC 57.604 33.333 0.40 0.00 38.15 3.06
6710 7760 9.177608 CCTGTAATTCTAGGATTTTGAATGACA 57.822 33.333 0.40 0.00 38.51 3.58
6718 7768 9.784531 TCTAGGATTTTGAATGACAATCTATCC 57.215 33.333 9.83 9.83 39.21 2.59
6719 7769 7.830099 AGGATTTTGAATGACAATCTATCCC 57.170 36.000 12.41 0.00 39.44 3.85
6722 7772 6.455360 TTTTGAATGACAATCTATCCCTGC 57.545 37.500 0.00 0.00 38.36 4.85
6728 7795 3.181451 TGACAATCTATCCCTGCACATCC 60.181 47.826 0.00 0.00 0.00 3.51
6729 7796 3.051581 ACAATCTATCCCTGCACATCCT 58.948 45.455 0.00 0.00 0.00 3.24
6734 7801 2.610438 ATCCCTGCACATCCTTGTTT 57.390 45.000 0.00 0.00 32.34 2.83
6741 7808 2.629137 TGCACATCCTTGTTTGCTTGAT 59.371 40.909 0.00 0.00 32.34 2.57
6744 7811 2.095059 ACATCCTTGTTTGCTTGATCGC 60.095 45.455 0.00 0.00 29.55 4.58
6752 7819 1.588824 TTGCTTGATCGCCTTGGCTG 61.589 55.000 10.12 3.87 0.00 4.85
6770 7837 1.153568 GCATGAGCGTGTGGAGCTA 60.154 57.895 0.00 0.00 46.13 3.32
6776 7843 0.804989 AGCGTGTGGAGCTATTTTGC 59.195 50.000 0.00 0.00 44.05 3.68
6778 7845 1.729149 GCGTGTGGAGCTATTTTGCAC 60.729 52.381 0.00 0.00 37.40 4.57
6787 7854 0.655733 CTATTTTGCACGCCGGGTAG 59.344 55.000 2.18 0.00 0.00 3.18
6805 7872 3.324108 GCCCCTGTTGACCCCGTA 61.324 66.667 0.00 0.00 0.00 4.02
6813 7880 4.642488 TGACCCCGTACCCCAGCA 62.642 66.667 0.00 0.00 0.00 4.41
6814 7881 3.782443 GACCCCGTACCCCAGCAG 61.782 72.222 0.00 0.00 0.00 4.24
6823 7890 4.424711 CCCCAGCAGCGCCCTTTA 62.425 66.667 2.29 0.00 0.00 1.85
6824 7891 2.825836 CCCAGCAGCGCCCTTTAG 60.826 66.667 2.29 0.00 0.00 1.85
6825 7892 2.825836 CCAGCAGCGCCCTTTAGG 60.826 66.667 2.29 0.00 39.47 2.69
6826 7893 2.045926 CAGCAGCGCCCTTTAGGT 60.046 61.111 2.29 0.00 38.26 3.08
6833 7900 3.780624 CGCCCTTTAGGTGTGCTAT 57.219 52.632 0.00 0.00 41.64 2.97
6834 7901 2.038387 CGCCCTTTAGGTGTGCTATT 57.962 50.000 0.00 0.00 41.64 1.73
6835 7902 1.940613 CGCCCTTTAGGTGTGCTATTC 59.059 52.381 0.00 0.00 41.64 1.75
6860 7927 3.309682 GCTTAATAGTGCTTGCGACATCA 59.690 43.478 0.00 0.00 0.00 3.07
6864 7931 0.608130 AGTGCTTGCGACATCACCTA 59.392 50.000 0.00 0.00 0.00 3.08
6865 7932 0.721718 GTGCTTGCGACATCACCTAC 59.278 55.000 0.00 0.00 0.00 3.18
6906 7981 3.628032 GCTATCAAGCCAAACTTACTCCC 59.372 47.826 0.00 0.00 43.40 4.30
6908 7983 0.521735 CAAGCCAAACTTACTCCCGC 59.478 55.000 0.00 0.00 36.04 6.13
6911 7986 1.202891 AGCCAAACTTACTCCCGCTTT 60.203 47.619 0.00 0.00 0.00 3.51
6918 7993 2.289506 ACTTACTCCCGCTTTTGGTCTC 60.290 50.000 0.00 0.00 0.00 3.36
6923 7998 2.168521 CTCCCGCTTTTGGTCTCAGATA 59.831 50.000 0.00 0.00 0.00 1.98
6931 8006 5.931146 GCTTTTGGTCTCAGATATCGATCAT 59.069 40.000 0.00 0.00 34.17 2.45
6939 8014 7.430793 GGTCTCAGATATCGATCATGATAAACG 59.569 40.741 8.54 8.55 34.67 3.60
6942 8017 8.452989 TCAGATATCGATCATGATAAACGTTG 57.547 34.615 8.54 3.05 34.67 4.10
6945 8020 8.520351 AGATATCGATCATGATAAACGTTGGTA 58.480 33.333 8.54 0.00 34.67 3.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 0.813184 CCAATGCACGGCTCTTGATT 59.187 50.000 0.00 0.00 0.00 2.57
18 19 0.955428 GTCCAATGCACGGCTCTTGA 60.955 55.000 0.00 0.00 0.00 3.02
20 21 0.322816 ATGTCCAATGCACGGCTCTT 60.323 50.000 0.00 0.00 0.00 2.85
26 27 0.171007 GTGGGAATGTCCAATGCACG 59.829 55.000 0.00 0.00 38.64 5.34
33 34 0.608035 GAAAGCGGTGGGAATGTCCA 60.608 55.000 0.00 0.00 38.64 4.02
127 129 2.973082 AAAAAGGCGGCTCCATGC 59.027 55.556 13.70 0.00 41.94 4.06
149 151 8.891671 TGAGTTAACCGTTTAAATGAGTAAGT 57.108 30.769 9.05 8.90 0.00 2.24
159 641 3.560896 GTGTGGCTGAGTTAACCGTTTAA 59.439 43.478 0.88 0.00 0.00 1.52
166 648 3.060363 CGTTATCGTGTGGCTGAGTTAAC 59.940 47.826 0.00 0.00 0.00 2.01
225 707 0.828677 ATTGTACCCCTGTACCGCTC 59.171 55.000 0.81 0.00 45.59 5.03
297 784 7.780745 TGTCAAAAGGGAGGAGTTAAATTTACA 59.219 33.333 0.00 0.00 0.00 2.41
312 800 0.756294 TCGAGTGCTGTCAAAAGGGA 59.244 50.000 0.00 0.00 0.00 4.20
333 821 1.087771 ATTAACGGCCGCTTTCGAGG 61.088 55.000 28.58 0.00 38.10 4.63
335 823 0.722848 GAATTAACGGCCGCTTTCGA 59.277 50.000 28.58 5.82 38.10 3.71
402 902 1.154225 CACGCGTTTTCTGGATGGC 60.154 57.895 10.22 0.00 0.00 4.40
485 997 1.139058 GGGTGTCTTATCGATGGTGCT 59.861 52.381 8.54 0.00 0.00 4.40
523 1035 1.178276 GTGCGGAGAAAGAGAGAGGA 58.822 55.000 0.00 0.00 0.00 3.71
1098 1719 3.861263 GAACCGCGCCAATCGACC 61.861 66.667 0.00 0.00 41.67 4.79
1114 1735 1.302192 CCTCCCAAAACCGAAGCGA 60.302 57.895 0.00 0.00 0.00 4.93
1117 1738 0.400594 AGACCCTCCCAAAACCGAAG 59.599 55.000 0.00 0.00 0.00 3.79
1134 1755 2.184322 GGCCAATCGCGTCAGAGA 59.816 61.111 5.77 0.00 38.94 3.10
1261 1882 1.522668 CCAGGCGTTTCTCATCACAA 58.477 50.000 0.00 0.00 0.00 3.33
1263 1884 1.026718 CCCCAGGCGTTTCTCATCAC 61.027 60.000 0.00 0.00 0.00 3.06
1288 1909 2.419021 CCGCCAATTGCAATCATCCTTT 60.419 45.455 13.38 0.00 41.33 3.11
1291 1912 0.461135 ACCGCCAATTGCAATCATCC 59.539 50.000 13.38 1.10 41.33 3.51
1301 1922 1.208293 ACAAACACCAAACCGCCAATT 59.792 42.857 0.00 0.00 0.00 2.32
1343 1964 7.553881 AGCTTCATACATTACCACAACATAC 57.446 36.000 0.00 0.00 0.00 2.39
1358 1979 2.104144 CGCGATGCAAAAGCTTCATAC 58.896 47.619 0.00 0.00 0.00 2.39
1383 2004 0.392461 GCCCATAACTCCACGAAGCA 60.392 55.000 0.00 0.00 0.00 3.91
1389 2010 2.880890 GTGATCATGCCCATAACTCCAC 59.119 50.000 0.00 0.00 0.00 4.02
1392 2013 3.144506 CAGGTGATCATGCCCATAACTC 58.855 50.000 0.00 0.00 0.00 3.01
1406 2027 8.483758 ACCTTAAATTTCGATACTACAGGTGAT 58.516 33.333 0.00 0.00 29.55 3.06
1487 2118 8.902540 AATTTGTAGACAAGACAACAGATACA 57.097 30.769 0.00 0.00 36.55 2.29
1488 2119 9.209175 AGAATTTGTAGACAAGACAACAGATAC 57.791 33.333 0.00 0.00 36.55 2.24
1489 2120 9.778741 AAGAATTTGTAGACAAGACAACAGATA 57.221 29.630 0.00 0.00 36.55 1.98
1490 2121 8.682936 AAGAATTTGTAGACAAGACAACAGAT 57.317 30.769 0.00 0.00 36.55 2.90
1491 2122 7.987458 AGAAGAATTTGTAGACAAGACAACAGA 59.013 33.333 0.00 0.00 36.55 3.41
1492 2123 8.066595 CAGAAGAATTTGTAGACAAGACAACAG 58.933 37.037 0.00 0.00 36.55 3.16
1493 2124 7.467267 GCAGAAGAATTTGTAGACAAGACAACA 60.467 37.037 0.00 0.00 36.55 3.33
1494 2125 6.853362 GCAGAAGAATTTGTAGACAAGACAAC 59.147 38.462 0.00 0.00 36.55 3.32
1495 2126 6.017109 GGCAGAAGAATTTGTAGACAAGACAA 60.017 38.462 0.00 0.00 37.15 3.18
1496 2127 5.470098 GGCAGAAGAATTTGTAGACAAGACA 59.530 40.000 0.00 0.00 37.15 3.41
1497 2128 5.389935 CGGCAGAAGAATTTGTAGACAAGAC 60.390 44.000 0.00 0.00 37.15 3.01
1498 2129 4.690748 CGGCAGAAGAATTTGTAGACAAGA 59.309 41.667 0.00 0.00 37.15 3.02
1499 2130 4.452455 ACGGCAGAAGAATTTGTAGACAAG 59.548 41.667 0.00 0.00 37.15 3.16
1500 2131 4.385825 ACGGCAGAAGAATTTGTAGACAA 58.614 39.130 0.00 0.00 0.00 3.18
1551 2182 4.500035 GCCCGAACTTACCAAAATCACAAA 60.500 41.667 0.00 0.00 0.00 2.83
1590 2221 2.295349 CAGCATGTGCCTGAACTTCTTT 59.705 45.455 0.57 0.00 43.38 2.52
1789 2423 2.584835 TGAGTAAGCTTTGGGCACAT 57.415 45.000 3.20 0.00 44.79 3.21
1968 2604 2.677524 GGGCCATGAAGCAGTGCA 60.678 61.111 19.20 0.00 0.00 4.57
2020 2658 9.561069 GGGAACAATATGTATAGTGAACAGATT 57.439 33.333 6.36 0.00 38.85 2.40
2186 2825 4.047822 TCAACAATTTACCAAAAGCGCAG 58.952 39.130 11.47 0.00 0.00 5.18
2189 2828 5.556194 GCAACTCAACAATTTACCAAAAGCG 60.556 40.000 0.00 0.00 0.00 4.68
2191 2830 7.538303 AAGCAACTCAACAATTTACCAAAAG 57.462 32.000 0.00 0.00 0.00 2.27
2199 2838 4.923281 GCGGAATAAGCAACTCAACAATTT 59.077 37.500 0.00 0.00 34.19 1.82
2200 2839 4.218417 AGCGGAATAAGCAACTCAACAATT 59.782 37.500 0.00 0.00 37.01 2.32
2203 2842 2.483877 CAGCGGAATAAGCAACTCAACA 59.516 45.455 0.00 0.00 37.01 3.33
2204 2843 2.484264 ACAGCGGAATAAGCAACTCAAC 59.516 45.455 0.00 0.00 37.01 3.18
2205 2844 2.778299 ACAGCGGAATAAGCAACTCAA 58.222 42.857 0.00 0.00 37.01 3.02
2206 2845 2.472695 ACAGCGGAATAAGCAACTCA 57.527 45.000 0.00 0.00 37.01 3.41
2389 3038 0.887933 CCGTGCTTTTTAGGTGCCAT 59.112 50.000 0.00 0.00 0.00 4.40
2392 3041 1.132453 GGATCCGTGCTTTTTAGGTGC 59.868 52.381 0.00 0.00 0.00 5.01
2412 3061 2.686816 GGCCGTGTTTCCATGTCCG 61.687 63.158 0.00 0.00 0.00 4.79
2418 3067 4.178169 ACCGTGGCCGTGTTTCCA 62.178 61.111 0.00 0.00 0.00 3.53
2461 3110 4.478206 TGGCTGTTTTTGGAAAATGACA 57.522 36.364 0.00 0.00 0.00 3.58
2608 3257 1.278985 CAGCCTGGTGTTGTAGATCCA 59.721 52.381 0.00 0.00 0.00 3.41
2649 3298 2.588877 CCGCCAGTAGCCAATCGG 60.589 66.667 0.00 0.00 38.78 4.18
2682 3331 1.679944 GCTTGCTGTTAGGGAGCATGA 60.680 52.381 10.77 0.00 45.69 3.07
2708 3357 2.620115 CTCACTTGAATGCTGGTGTTGT 59.380 45.455 0.00 0.00 0.00 3.32
2936 3585 0.767375 AAGGAACAAGCTGCTCCAGA 59.233 50.000 1.00 0.00 35.13 3.86
2966 3615 1.383456 TTTGCAGGCTCACACACACC 61.383 55.000 0.00 0.00 0.00 4.16
3015 3665 1.754234 CTGGGAATTGGAAGGCCCG 60.754 63.158 0.00 0.00 43.70 6.13
3046 3696 7.841915 TTCCAAATTTTGAAAAGAAGGACAC 57.158 32.000 10.72 0.00 0.00 3.67
3054 3704 6.997476 TCCCCTCATTTCCAAATTTTGAAAAG 59.003 34.615 18.19 14.79 0.00 2.27
3055 3705 6.904626 TCCCCTCATTTCCAAATTTTGAAAA 58.095 32.000 18.19 3.29 0.00 2.29
3110 3760 2.223971 CGATTTGCCGTCCTAGTATGGT 60.224 50.000 0.00 0.00 0.00 3.55
3140 3790 0.179070 TACAAAGCACGGACACAGCA 60.179 50.000 0.00 0.00 0.00 4.41
3143 3793 1.411246 ACTCTACAAAGCACGGACACA 59.589 47.619 0.00 0.00 0.00 3.72
3237 3887 4.833390 AGGGAGTAAAATTGGAAGACGAG 58.167 43.478 0.00 0.00 0.00 4.18
3251 3901 5.759059 TCTTCGTAGGAATGTAGGGAGTAA 58.241 41.667 0.00 0.00 0.00 2.24
3269 3919 6.613536 GCAAAAAGAAATTTACGCCTTCTTCG 60.614 38.462 0.00 0.00 38.21 3.79
3289 3939 2.682269 GCTTTCCTTGGGGTTTGCAAAA 60.682 45.455 14.67 0.00 0.00 2.44
3315 3965 3.849527 AGCTGGGAAAGAAATTTCTGGT 58.150 40.909 21.15 12.35 37.65 4.00
3360 4010 1.303236 TGATGGTGGGCAAAGACGG 60.303 57.895 0.00 0.00 0.00 4.79
3460 4111 1.728069 CATGCATGTCAGGCTGCTC 59.272 57.895 18.91 6.11 39.16 4.26
3624 4277 2.108168 CACCGTTCCTATGAAGAGGGA 58.892 52.381 6.98 0.00 37.20 4.20
3643 4296 4.343231 ACAATGCAAATGACATACTCCCA 58.657 39.130 9.59 0.00 0.00 4.37
3731 4384 8.547894 GGCAACCAAAAGACAAAATTAAGTAAG 58.452 33.333 0.00 0.00 0.00 2.34
3847 4500 1.678101 GTGCAAAAAGACTGTCTGGCT 59.322 47.619 11.71 0.00 33.68 4.75
4234 5166 8.518430 TGAGAATTATTTCAATCCGATTGGAA 57.482 30.769 15.76 15.76 41.68 3.53
4357 5289 3.431486 GCCTGGGAATGAGAAGACACTAG 60.431 52.174 0.00 0.00 0.00 2.57
4363 5295 0.914644 CAGGCCTGGGAATGAGAAGA 59.085 55.000 26.14 0.00 0.00 2.87
4364 5296 0.106819 CCAGGCCTGGGAATGAGAAG 60.107 60.000 40.24 13.66 46.81 2.85
4365 5297 2.001803 CCAGGCCTGGGAATGAGAA 58.998 57.895 40.24 0.00 46.81 2.87
4366 5298 3.745546 CCAGGCCTGGGAATGAGA 58.254 61.111 40.24 0.00 46.81 3.27
4375 5307 0.248843 GAGAAGACACTCCAGGCCTG 59.751 60.000 26.87 26.87 0.00 4.85
4376 5308 0.178921 TGAGAAGACACTCCAGGCCT 60.179 55.000 0.00 0.00 36.22 5.19
4377 5309 0.908198 ATGAGAAGACACTCCAGGCC 59.092 55.000 0.00 0.00 36.22 5.19
4378 5310 2.626840 GAATGAGAAGACACTCCAGGC 58.373 52.381 0.00 0.00 36.22 4.85
4379 5311 2.093235 GGGAATGAGAAGACACTCCAGG 60.093 54.545 0.00 0.00 37.83 4.45
4380 5312 2.568956 TGGGAATGAGAAGACACTCCAG 59.431 50.000 0.00 0.00 37.83 3.86
4381 5313 2.568956 CTGGGAATGAGAAGACACTCCA 59.431 50.000 0.00 0.00 37.83 3.86
4382 5314 2.093235 CCTGGGAATGAGAAGACACTCC 60.093 54.545 0.00 0.00 35.73 3.85
4383 5315 2.679349 GCCTGGGAATGAGAAGACACTC 60.679 54.545 0.00 0.00 37.42 3.51
4384 5316 1.280421 GCCTGGGAATGAGAAGACACT 59.720 52.381 0.00 0.00 0.00 3.55
4385 5317 1.680249 GGCCTGGGAATGAGAAGACAC 60.680 57.143 0.00 0.00 0.00 3.67
4386 5318 0.620556 GGCCTGGGAATGAGAAGACA 59.379 55.000 0.00 0.00 0.00 3.41
4387 5319 0.915364 AGGCCTGGGAATGAGAAGAC 59.085 55.000 3.11 0.00 0.00 3.01
4569 5535 5.453567 AGCATCATTCATGGATGTTCATG 57.546 39.130 13.82 11.07 43.17 3.07
4826 5793 8.709646 ACTCGTAGATGATGAAAAAGTAACAAC 58.290 33.333 0.00 0.00 33.89 3.32
4891 5858 9.685276 AATGACAGTTCATCTCCAAAATATGTA 57.315 29.630 0.00 0.00 42.00 2.29
4914 5882 6.199937 AGTACAAATTGCTAGGCTTGAATG 57.800 37.500 0.00 0.00 0.00 2.67
4984 5959 6.638873 CCAACATTGATTGCGTAAAAACACTA 59.361 34.615 0.00 0.00 0.00 2.74
5310 6287 4.997395 CAGTTGTAAGCAAGAGAAGCCTTA 59.003 41.667 0.00 0.00 34.94 2.69
5364 6341 3.630312 GTCACACCCAAAAGAACTAAGCA 59.370 43.478 0.00 0.00 0.00 3.91
5415 6393 6.014669 AGTGAGTGAAAGCTTCAGATAGTTCT 60.015 38.462 0.00 0.00 41.01 3.01
5419 6397 5.477510 ACAGTGAGTGAAAGCTTCAGATAG 58.522 41.667 0.00 0.00 41.01 2.08
5422 6400 3.827008 ACAGTGAGTGAAAGCTTCAGA 57.173 42.857 0.00 0.00 41.01 3.27
5424 6402 3.872696 TGAACAGTGAGTGAAAGCTTCA 58.127 40.909 0.00 0.00 37.33 3.02
5426 6404 3.878778 ACTGAACAGTGAGTGAAAGCTT 58.121 40.909 6.67 0.00 40.75 3.74
5434 6412 6.595716 GGAAGCATATTTACTGAACAGTGAGT 59.404 38.462 16.37 8.49 42.52 3.41
5556 6558 3.874392 ATAAGCCAACAAATGTCAGCC 57.126 42.857 4.65 0.00 0.00 4.85
5586 6588 8.755018 GTCAAAACAAGACACAAGAATAAATGG 58.245 33.333 0.00 0.00 36.06 3.16
5654 6658 6.539103 GGAACAAGAACAGACTTGAGTAAACT 59.461 38.462 14.00 0.00 46.85 2.66
5746 6750 3.412386 GCTCCAGTTTGCTCCTTTTCTA 58.588 45.455 0.00 0.00 0.00 2.10
5821 6825 3.755628 CCATTGCTGCCGCTTGCT 61.756 61.111 0.70 0.00 42.00 3.91
5825 6829 2.282391 TTCACCATTGCTGCCGCT 60.282 55.556 0.70 0.00 36.97 5.52
5834 6838 6.969043 TGGTCTTCCTATATTGTTCACCATT 58.031 36.000 0.00 0.00 34.23 3.16
6147 7161 3.125829 CGAGAAGCTCAAATAAAGCAGCA 59.874 43.478 0.00 0.00 42.35 4.41
6185 7202 1.529438 CGCGGCTCAAAACTAAAGACA 59.471 47.619 0.00 0.00 0.00 3.41
6191 7208 0.878416 ATTTGCGCGGCTCAAAACTA 59.122 45.000 20.37 0.00 37.04 2.24
6192 7209 0.387239 GATTTGCGCGGCTCAAAACT 60.387 50.000 20.37 6.73 37.04 2.66
6197 7214 1.078778 TTAGGATTTGCGCGGCTCA 60.079 52.632 8.83 0.00 0.00 4.26
6205 7222 6.183360 GCAAAGTAAGCAATGTTAGGATTTGC 60.183 38.462 0.00 0.00 44.67 3.68
6207 7224 7.232118 AGCAAAGTAAGCAATGTTAGGATTT 57.768 32.000 0.00 0.00 0.00 2.17
6212 7229 4.091424 GCGAGCAAAGTAAGCAATGTTAG 58.909 43.478 0.00 0.00 0.00 2.34
6231 7255 4.832248 ACCTTGAAGATAAACATCAGCGA 58.168 39.130 0.00 0.00 0.00 4.93
6323 7347 4.582869 AGAGCATTGTTTAGCAGACATGA 58.417 39.130 0.00 0.00 0.00 3.07
6325 7349 5.709164 AGAAAGAGCATTGTTTAGCAGACAT 59.291 36.000 0.00 0.00 0.00 3.06
6356 7382 1.614413 GGACGGATCACCCAGAGATAC 59.386 57.143 0.00 0.00 34.14 2.24
6376 7402 4.982917 TGTGAGGCACCACTTGGAAAGG 62.983 54.545 1.14 0.00 40.22 3.11
6388 7414 4.320608 TTTGGAGAAAATTGTGAGGCAC 57.679 40.909 0.00 0.00 34.56 5.01
6436 7462 4.948004 CCAAGTAATACAAGAGGGTTTCCC 59.052 45.833 0.00 0.00 45.90 3.97
6437 7463 4.398358 GCCAAGTAATACAAGAGGGTTTCC 59.602 45.833 0.00 0.00 0.00 3.13
6438 7464 5.254115 AGCCAAGTAATACAAGAGGGTTTC 58.746 41.667 0.00 0.00 0.00 2.78
6439 7465 5.256806 AGCCAAGTAATACAAGAGGGTTT 57.743 39.130 0.00 0.00 0.00 3.27
6440 7466 4.929146 AGCCAAGTAATACAAGAGGGTT 57.071 40.909 0.00 0.00 0.00 4.11
6441 7467 4.141688 GCTAGCCAAGTAATACAAGAGGGT 60.142 45.833 2.29 0.00 0.00 4.34
6442 7468 4.101741 AGCTAGCCAAGTAATACAAGAGGG 59.898 45.833 12.13 0.00 0.00 4.30
6443 7469 5.053145 CAGCTAGCCAAGTAATACAAGAGG 58.947 45.833 12.13 0.00 0.00 3.69
6444 7470 4.509600 GCAGCTAGCCAAGTAATACAAGAG 59.490 45.833 12.13 0.00 37.23 2.85
6445 7471 4.442706 GCAGCTAGCCAAGTAATACAAGA 58.557 43.478 12.13 0.00 37.23 3.02
6478 7504 5.004448 TGTAGGTGAACACAAACAACTGAA 58.996 37.500 7.25 0.00 35.58 3.02
6479 7505 4.580868 TGTAGGTGAACACAAACAACTGA 58.419 39.130 7.25 0.00 35.58 3.41
6480 7506 4.730613 GCTGTAGGTGAACACAAACAACTG 60.731 45.833 7.25 1.44 35.58 3.16
6481 7507 3.377172 GCTGTAGGTGAACACAAACAACT 59.623 43.478 7.25 0.00 37.78 3.16
6521 7548 3.065655 CTCTCCAGAAAAGCTGTGACAG 58.934 50.000 8.52 8.52 43.33 3.51
6546 7573 3.006430 TGCGAATTAGACTCCAACACAGA 59.994 43.478 0.00 0.00 0.00 3.41
6561 7588 1.194547 GTGTGATCACGTGTGCGAATT 59.805 47.619 20.54 0.00 42.00 2.17
6562 7589 0.790207 GTGTGATCACGTGTGCGAAT 59.210 50.000 20.54 0.11 42.00 3.34
6573 7600 1.995066 ATCCCTGGGCGTGTGATCA 60.995 57.895 8.22 0.00 0.00 2.92
6574 7601 1.524621 CATCCCTGGGCGTGTGATC 60.525 63.158 8.22 0.00 0.00 2.92
6575 7602 2.591753 CATCCCTGGGCGTGTGAT 59.408 61.111 8.22 0.00 0.00 3.06
6576 7603 4.408821 GCATCCCTGGGCGTGTGA 62.409 66.667 8.22 0.00 0.00 3.58
6582 7609 4.066139 AAGTGGGCATCCCTGGGC 62.066 66.667 8.22 0.00 45.70 5.36
6608 7635 1.203364 AGTTCAGGTCCCTCAGGTCAT 60.203 52.381 0.00 0.00 0.00 3.06
6618 7645 3.927854 GACCTACTTTCAGTTCAGGTCC 58.072 50.000 12.28 0.00 43.41 4.46
6620 7647 3.244249 GCAGACCTACTTTCAGTTCAGGT 60.244 47.826 0.00 0.00 39.30 4.00
6622 7649 4.264460 AGCAGACCTACTTTCAGTTCAG 57.736 45.455 0.00 0.00 0.00 3.02
6623 7650 4.689612 AAGCAGACCTACTTTCAGTTCA 57.310 40.909 0.00 0.00 0.00 3.18
6635 7685 2.555757 GCAAATGTGAGAAAGCAGACCT 59.444 45.455 0.00 0.00 0.00 3.85
6651 7701 7.752239 GCTTGCTTGAATCGTATATATGCAAAT 59.248 33.333 0.00 0.00 37.43 2.32
6659 7709 5.523916 AGTTTCGCTTGCTTGAATCGTATAT 59.476 36.000 0.00 0.00 0.00 0.86
6663 7713 1.873591 AGTTTCGCTTGCTTGAATCGT 59.126 42.857 0.00 0.00 0.00 3.73
6665 7715 2.485814 AGGAGTTTCGCTTGCTTGAATC 59.514 45.455 0.00 0.00 0.00 2.52
6666 7716 2.227388 CAGGAGTTTCGCTTGCTTGAAT 59.773 45.455 0.00 0.00 0.00 2.57
6667 7717 1.603802 CAGGAGTTTCGCTTGCTTGAA 59.396 47.619 0.00 0.00 0.00 2.69
6669 7719 0.947244 ACAGGAGTTTCGCTTGCTTG 59.053 50.000 0.00 0.00 0.00 4.01
6671 7721 2.543777 TTACAGGAGTTTCGCTTGCT 57.456 45.000 0.00 0.00 0.00 3.91
6673 7723 5.292101 CCTAGAATTACAGGAGTTTCGCTTG 59.708 44.000 0.00 0.00 33.42 4.01
6674 7724 5.187186 TCCTAGAATTACAGGAGTTTCGCTT 59.813 40.000 3.82 0.00 35.99 4.68
6675 7725 4.710375 TCCTAGAATTACAGGAGTTTCGCT 59.290 41.667 3.82 0.00 35.99 4.93
6676 7726 5.007385 TCCTAGAATTACAGGAGTTTCGC 57.993 43.478 3.82 0.00 35.99 4.70
6681 7731 9.401058 CATTCAAAATCCTAGAATTACAGGAGT 57.599 33.333 11.94 7.56 44.06 3.85
6682 7732 9.618890 TCATTCAAAATCCTAGAATTACAGGAG 57.381 33.333 11.94 1.29 44.06 3.69
6684 7734 9.177608 TGTCATTCAAAATCCTAGAATTACAGG 57.822 33.333 0.00 0.00 33.44 4.00
6692 7742 9.784531 GGATAGATTGTCATTCAAAATCCTAGA 57.215 33.333 0.00 0.00 38.90 2.43
6693 7743 9.007901 GGGATAGATTGTCATTCAAAATCCTAG 57.992 37.037 15.80 0.00 40.19 3.02
6694 7744 8.727149 AGGGATAGATTGTCATTCAAAATCCTA 58.273 33.333 15.80 0.00 40.19 2.94
6696 7746 7.655490 CAGGGATAGATTGTCATTCAAAATCC 58.345 38.462 11.58 11.58 39.93 3.01
6697 7747 7.144000 GCAGGGATAGATTGTCATTCAAAATC 58.856 38.462 0.00 0.00 39.62 2.17
6699 7749 5.951148 TGCAGGGATAGATTGTCATTCAAAA 59.049 36.000 0.00 0.00 39.62 2.44
6700 7750 5.357878 GTGCAGGGATAGATTGTCATTCAAA 59.642 40.000 0.00 0.00 39.62 2.69
6701 7751 4.883585 GTGCAGGGATAGATTGTCATTCAA 59.116 41.667 0.00 0.00 40.53 2.69
6702 7752 4.080413 TGTGCAGGGATAGATTGTCATTCA 60.080 41.667 0.00 0.00 0.00 2.57
6703 7753 4.454678 TGTGCAGGGATAGATTGTCATTC 58.545 43.478 0.00 0.00 0.00 2.67
6705 7755 4.506271 GGATGTGCAGGGATAGATTGTCAT 60.506 45.833 0.00 0.00 0.00 3.06
6707 7757 3.072184 AGGATGTGCAGGGATAGATTGTC 59.928 47.826 0.00 0.00 0.00 3.18
6708 7758 3.051581 AGGATGTGCAGGGATAGATTGT 58.948 45.455 0.00 0.00 0.00 2.71
6709 7759 3.784511 AGGATGTGCAGGGATAGATTG 57.215 47.619 0.00 0.00 0.00 2.67
6710 7760 3.461085 ACAAGGATGTGCAGGGATAGATT 59.539 43.478 0.00 0.00 38.69 2.40
6711 7761 3.051581 ACAAGGATGTGCAGGGATAGAT 58.948 45.455 0.00 0.00 38.69 1.98
6712 7762 2.481441 ACAAGGATGTGCAGGGATAGA 58.519 47.619 0.00 0.00 38.69 1.98
6713 7763 3.287867 AACAAGGATGTGCAGGGATAG 57.712 47.619 0.00 0.00 40.46 2.08
6715 7765 2.173519 CAAACAAGGATGTGCAGGGAT 58.826 47.619 0.00 0.00 40.46 3.85
6717 7767 0.037975 GCAAACAAGGATGTGCAGGG 60.038 55.000 0.00 0.00 40.46 4.45
6718 7768 0.963962 AGCAAACAAGGATGTGCAGG 59.036 50.000 0.00 0.00 40.46 4.85
6719 7769 2.034939 TCAAGCAAACAAGGATGTGCAG 59.965 45.455 0.00 0.00 40.46 4.41
6722 7772 3.495193 CGATCAAGCAAACAAGGATGTG 58.505 45.455 0.00 0.00 40.46 3.21
6728 7795 2.322161 CAAGGCGATCAAGCAAACAAG 58.678 47.619 0.00 0.00 39.27 3.16
6729 7796 1.000385 CCAAGGCGATCAAGCAAACAA 60.000 47.619 0.00 0.00 39.27 2.83
6744 7811 2.749044 ACGCTCATGCAGCCAAGG 60.749 61.111 10.34 0.00 46.74 3.61
6752 7819 0.531532 ATAGCTCCACACGCTCATGC 60.532 55.000 0.00 0.00 38.86 4.06
6770 7837 2.043980 CCTACCCGGCGTGCAAAAT 61.044 57.895 6.01 0.00 0.00 1.82
6813 7880 1.550130 TAGCACACCTAAAGGGCGCT 61.550 55.000 7.64 0.00 39.95 5.92
6814 7881 0.463833 ATAGCACACCTAAAGGGCGC 60.464 55.000 0.00 0.00 40.27 6.53
6815 7882 1.940613 GAATAGCACACCTAAAGGGCG 59.059 52.381 0.20 0.00 40.27 6.13
6816 7883 2.945668 CAGAATAGCACACCTAAAGGGC 59.054 50.000 0.20 0.00 40.27 5.19
6817 7884 3.545703 CCAGAATAGCACACCTAAAGGG 58.454 50.000 0.20 0.00 40.27 3.95
6818 7885 2.945668 GCCAGAATAGCACACCTAAAGG 59.054 50.000 0.00 0.00 42.17 3.11
6819 7886 3.878778 AGCCAGAATAGCACACCTAAAG 58.121 45.455 0.00 0.00 0.00 1.85
6820 7887 4.301072 AAGCCAGAATAGCACACCTAAA 57.699 40.909 0.00 0.00 0.00 1.85
6821 7888 5.429681 TTAAGCCAGAATAGCACACCTAA 57.570 39.130 0.00 0.00 0.00 2.69
6822 7889 5.630415 ATTAAGCCAGAATAGCACACCTA 57.370 39.130 0.00 0.00 0.00 3.08
6823 7890 4.510167 ATTAAGCCAGAATAGCACACCT 57.490 40.909 0.00 0.00 0.00 4.00
6824 7891 5.237344 CACTATTAAGCCAGAATAGCACACC 59.763 44.000 8.89 0.00 39.51 4.16
6825 7892 5.277538 GCACTATTAAGCCAGAATAGCACAC 60.278 44.000 8.89 0.00 39.51 3.82
6826 7893 4.816385 GCACTATTAAGCCAGAATAGCACA 59.184 41.667 8.89 0.00 39.51 4.57
6827 7894 5.059833 AGCACTATTAAGCCAGAATAGCAC 58.940 41.667 8.89 3.60 39.51 4.40
6828 7895 5.296151 AGCACTATTAAGCCAGAATAGCA 57.704 39.130 8.89 0.00 39.51 3.49
6829 7896 5.561725 GCAAGCACTATTAAGCCAGAATAGC 60.562 44.000 8.89 0.00 39.51 2.97
6830 7897 5.333645 CGCAAGCACTATTAAGCCAGAATAG 60.334 44.000 7.84 7.84 40.99 1.73
6831 7898 4.511454 CGCAAGCACTATTAAGCCAGAATA 59.489 41.667 0.00 0.00 0.00 1.75
6832 7899 3.313526 CGCAAGCACTATTAAGCCAGAAT 59.686 43.478 0.00 0.00 0.00 2.40
6833 7900 2.677836 CGCAAGCACTATTAAGCCAGAA 59.322 45.455 0.00 0.00 0.00 3.02
6834 7901 2.093711 TCGCAAGCACTATTAAGCCAGA 60.094 45.455 0.00 0.00 37.18 3.86
6835 7902 2.030946 GTCGCAAGCACTATTAAGCCAG 59.969 50.000 0.00 0.00 37.18 4.85
6864 7931 3.071602 AGCACTAAGACAACATCACCAGT 59.928 43.478 0.00 0.00 0.00 4.00
6865 7932 3.668447 AGCACTAAGACAACATCACCAG 58.332 45.455 0.00 0.00 0.00 4.00
6893 7968 2.030274 CCAAAAGCGGGAGTAAGTTTGG 60.030 50.000 0.00 0.00 39.13 3.28
6897 7972 1.697982 AGACCAAAAGCGGGAGTAAGT 59.302 47.619 0.00 0.00 0.00 2.24
6900 7975 1.275291 CTGAGACCAAAAGCGGGAGTA 59.725 52.381 0.00 0.00 0.00 2.59
6906 7981 3.706698 TCGATATCTGAGACCAAAAGCG 58.293 45.455 0.34 0.00 0.00 4.68
6908 7983 7.150640 TCATGATCGATATCTGAGACCAAAAG 58.849 38.462 0.00 0.00 32.93 2.27
6911 7986 6.847421 ATCATGATCGATATCTGAGACCAA 57.153 37.500 1.18 0.00 32.93 3.67
6918 7993 7.329471 ACCAACGTTTATCATGATCGATATCTG 59.671 37.037 18.83 7.95 32.93 2.90
6923 7998 6.590292 GGATACCAACGTTTATCATGATCGAT 59.410 38.462 18.83 0.00 0.00 3.59
6931 8006 7.340256 ACCAAATAGGATACCAACGTTTATCA 58.660 34.615 17.50 3.48 41.22 2.15
6939 8014 6.415573 AGAGACAACCAAATAGGATACCAAC 58.584 40.000 0.00 0.00 41.22 3.77
6942 8017 5.753921 CGAAGAGACAACCAAATAGGATACC 59.246 44.000 0.00 0.00 41.22 2.73
6945 8020 4.192317 GCGAAGAGACAACCAAATAGGAT 58.808 43.478 0.00 0.00 41.22 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.