Multiple sequence alignment - TraesCS7D01G157500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G157500 chr7D 100.000 3791 0 0 1 3791 105247399 105251189 0.000000e+00 7001.0
1 TraesCS7D01G157500 chr7D 81.453 922 124 22 2348 3255 105288004 105288892 0.000000e+00 712.0
2 TraesCS7D01G157500 chr7D 98.000 50 1 0 3 52 403806808 403806857 1.880000e-13 87.9
3 TraesCS7D01G157500 chr7A 91.752 3722 188 42 147 3788 109840446 109844128 0.000000e+00 5062.0
4 TraesCS7D01G157500 chr7B 91.948 3465 175 35 130 3545 63855140 63858549 0.000000e+00 4758.0
5 TraesCS7D01G157500 chr7B 96.154 104 2 1 3684 3787 63858632 63858733 6.510000e-38 169.0
6 TraesCS7D01G157500 chr7B 100.000 29 0 0 3641 3669 63858564 63858592 2.000000e-03 54.7
7 TraesCS7D01G157500 chr5D 100.000 48 0 0 2 49 320453762 320453809 5.220000e-14 89.8
8 TraesCS7D01G157500 chr5A 100.000 48 0 0 1 48 338923236 338923189 5.220000e-14 89.8
9 TraesCS7D01G157500 chr4A 100.000 48 0 0 1 48 683889163 683889116 5.220000e-14 89.8
10 TraesCS7D01G157500 chr2A 100.000 48 0 0 1 48 78256312 78256265 5.220000e-14 89.8
11 TraesCS7D01G157500 chr3A 98.000 50 1 0 1 50 603794863 603794814 1.880000e-13 87.9
12 TraesCS7D01G157500 chr5B 94.545 55 3 0 1 55 566789524 566789470 6.750000e-13 86.1
13 TraesCS7D01G157500 chr4D 96.154 52 2 0 1 52 464203778 464203727 6.750000e-13 86.1
14 TraesCS7D01G157500 chr2D 96.154 52 2 0 2 53 428554926 428554875 6.750000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G157500 chr7D 105247399 105251189 3790 False 7001.000000 7001 100.000 1 3791 1 chr7D.!!$F1 3790
1 TraesCS7D01G157500 chr7D 105288004 105288892 888 False 712.000000 712 81.453 2348 3255 1 chr7D.!!$F2 907
2 TraesCS7D01G157500 chr7A 109840446 109844128 3682 False 5062.000000 5062 91.752 147 3788 1 chr7A.!!$F1 3641
3 TraesCS7D01G157500 chr7B 63855140 63858733 3593 False 1660.566667 4758 96.034 130 3787 3 chr7B.!!$F1 3657

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
563 584 0.602905 AAGAGCAACGGAAACCCTCG 60.603 55.0 0.0 0.0 0.0 4.63 F
1461 1532 0.535335 TGCCGACTAAGATGGTGGTC 59.465 55.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1734 1811 0.235926 GCTTCCAAGAACTGCACGAC 59.764 55.0 0.0 0.0 0.0 4.34 R
3205 3307 0.110419 CACGCAACGGTAACCACATG 60.110 55.0 0.0 0.0 0.0 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 9.819267 AGAAAGACTTATATTTAGAAACGGAGG 57.181 33.333 0.00 0.00 0.00 4.30
43 44 8.959705 AAAGACTTATATTTAGAAACGGAGGG 57.040 34.615 0.00 0.00 0.00 4.30
44 45 7.909485 AGACTTATATTTAGAAACGGAGGGA 57.091 36.000 0.00 0.00 0.00 4.20
45 46 7.953752 AGACTTATATTTAGAAACGGAGGGAG 58.046 38.462 0.00 0.00 0.00 4.30
46 47 7.564292 AGACTTATATTTAGAAACGGAGGGAGT 59.436 37.037 0.00 0.00 0.00 3.85
47 48 8.773033 ACTTATATTTAGAAACGGAGGGAGTA 57.227 34.615 0.00 0.00 0.00 2.59
48 49 8.858094 ACTTATATTTAGAAACGGAGGGAGTAG 58.142 37.037 0.00 0.00 0.00 2.57
49 50 6.667558 ATATTTAGAAACGGAGGGAGTAGG 57.332 41.667 0.00 0.00 0.00 3.18
50 51 3.463048 TTAGAAACGGAGGGAGTAGGT 57.537 47.619 0.00 0.00 0.00 3.08
51 52 1.849977 AGAAACGGAGGGAGTAGGTC 58.150 55.000 0.00 0.00 0.00 3.85
52 53 1.076677 AGAAACGGAGGGAGTAGGTCA 59.923 52.381 0.00 0.00 0.00 4.02
53 54 2.108970 GAAACGGAGGGAGTAGGTCAT 58.891 52.381 0.00 0.00 0.00 3.06
54 55 3.053095 AGAAACGGAGGGAGTAGGTCATA 60.053 47.826 0.00 0.00 0.00 2.15
55 56 2.660670 ACGGAGGGAGTAGGTCATAG 57.339 55.000 0.00 0.00 0.00 2.23
56 57 1.145325 ACGGAGGGAGTAGGTCATAGG 59.855 57.143 0.00 0.00 0.00 2.57
57 58 1.145325 CGGAGGGAGTAGGTCATAGGT 59.855 57.143 0.00 0.00 0.00 3.08
58 59 2.424523 CGGAGGGAGTAGGTCATAGGTT 60.425 54.545 0.00 0.00 0.00 3.50
59 60 3.655384 GGAGGGAGTAGGTCATAGGTTT 58.345 50.000 0.00 0.00 0.00 3.27
60 61 3.388350 GGAGGGAGTAGGTCATAGGTTTG 59.612 52.174 0.00 0.00 0.00 2.93
61 62 3.385115 AGGGAGTAGGTCATAGGTTTGG 58.615 50.000 0.00 0.00 0.00 3.28
62 63 2.438392 GGGAGTAGGTCATAGGTTTGGG 59.562 54.545 0.00 0.00 0.00 4.12
63 64 3.381335 GGAGTAGGTCATAGGTTTGGGA 58.619 50.000 0.00 0.00 0.00 4.37
64 65 3.134262 GGAGTAGGTCATAGGTTTGGGAC 59.866 52.174 0.00 0.00 0.00 4.46
65 66 4.031611 GAGTAGGTCATAGGTTTGGGACT 58.968 47.826 0.00 0.00 0.00 3.85
66 67 5.206587 GAGTAGGTCATAGGTTTGGGACTA 58.793 45.833 0.00 0.00 0.00 2.59
67 68 4.961099 AGTAGGTCATAGGTTTGGGACTAC 59.039 45.833 0.00 0.00 0.00 2.73
68 69 4.076175 AGGTCATAGGTTTGGGACTACT 57.924 45.455 0.00 0.00 0.00 2.57
69 70 5.216665 AGGTCATAGGTTTGGGACTACTA 57.783 43.478 0.00 0.00 0.00 1.82
70 71 5.596763 AGGTCATAGGTTTGGGACTACTAA 58.403 41.667 0.00 0.00 0.00 2.24
71 72 5.661759 AGGTCATAGGTTTGGGACTACTAAG 59.338 44.000 0.00 0.00 0.00 2.18
72 73 5.424573 GGTCATAGGTTTGGGACTACTAAGT 59.575 44.000 0.00 0.00 39.21 2.24
73 74 6.070366 GGTCATAGGTTTGGGACTACTAAGTT 60.070 42.308 0.00 0.00 35.56 2.66
74 75 7.392418 GTCATAGGTTTGGGACTACTAAGTTT 58.608 38.462 0.00 0.00 35.56 2.66
75 76 7.548427 GTCATAGGTTTGGGACTACTAAGTTTC 59.452 40.741 0.00 0.00 35.56 2.78
76 77 7.456902 TCATAGGTTTGGGACTACTAAGTTTCT 59.543 37.037 0.00 0.00 35.56 2.52
77 78 8.755977 CATAGGTTTGGGACTACTAAGTTTCTA 58.244 37.037 0.00 0.00 35.56 2.10
78 79 7.809880 AGGTTTGGGACTACTAAGTTTCTAT 57.190 36.000 0.00 0.00 35.56 1.98
79 80 7.621796 AGGTTTGGGACTACTAAGTTTCTATG 58.378 38.462 0.00 0.00 35.56 2.23
80 81 7.456902 AGGTTTGGGACTACTAAGTTTCTATGA 59.543 37.037 0.00 0.00 35.56 2.15
81 82 8.098912 GGTTTGGGACTACTAAGTTTCTATGAA 58.901 37.037 0.00 0.00 35.56 2.57
82 83 9.498176 GTTTGGGACTACTAAGTTTCTATGAAA 57.502 33.333 0.00 0.00 35.56 2.69
112 113 7.897575 TCTCTTTCTTTGAGTTTGAGATAGC 57.102 36.000 0.00 0.00 33.59 2.97
113 114 7.675062 TCTCTTTCTTTGAGTTTGAGATAGCT 58.325 34.615 0.00 0.00 33.59 3.32
114 115 8.807118 TCTCTTTCTTTGAGTTTGAGATAGCTA 58.193 33.333 0.00 0.00 33.59 3.32
115 116 8.764524 TCTTTCTTTGAGTTTGAGATAGCTAC 57.235 34.615 0.00 0.00 0.00 3.58
116 117 7.819900 TCTTTCTTTGAGTTTGAGATAGCTACC 59.180 37.037 0.00 0.00 0.00 3.18
117 118 5.978814 TCTTTGAGTTTGAGATAGCTACCC 58.021 41.667 0.00 0.00 0.00 3.69
118 119 4.386867 TTGAGTTTGAGATAGCTACCCG 57.613 45.455 0.00 0.00 0.00 5.28
119 120 2.100916 TGAGTTTGAGATAGCTACCCGC 59.899 50.000 0.00 0.00 39.57 6.13
139 140 5.339177 CCGCTTATTTCAACACATTGCATA 58.661 37.500 0.00 0.00 35.63 3.14
152 153 6.624423 ACACATTGCATAGAAACCTCATTTC 58.376 36.000 0.00 0.00 46.21 2.17
178 179 6.569179 TTTTCCTTTAAGAAGTCCAATCCG 57.431 37.500 0.00 0.00 0.00 4.18
192 193 2.546795 CCAATCCGCTTTCGCTCTATCT 60.547 50.000 0.00 0.00 0.00 1.98
240 241 9.092876 TCCAAAATTCATGTGTTTGTTTTCTAC 57.907 29.630 13.54 0.00 31.66 2.59
245 246 7.542534 TTCATGTGTTTGTTTTCTACGTACT 57.457 32.000 0.00 0.00 0.00 2.73
258 259 4.603985 TCTACGTACTATCCAAATGCACG 58.396 43.478 0.00 0.00 0.00 5.34
261 262 4.746729 ACGTACTATCCAAATGCACGTAA 58.253 39.130 0.00 0.00 39.15 3.18
287 289 7.725251 TGCAAAATTCTAAATATCCCATGGTC 58.275 34.615 11.73 0.00 0.00 4.02
304 306 2.307768 GGTCGGTGACATCTCATCCTA 58.692 52.381 0.00 0.00 33.68 2.94
309 311 4.038042 TCGGTGACATCTCATCCTATGTTC 59.962 45.833 0.00 0.00 36.48 3.18
315 325 8.180267 GTGACATCTCATCCTATGTTCTTTTTG 58.820 37.037 0.00 0.00 36.48 2.44
362 373 3.691609 CCTAAGAAGCCCTCAAATGTGAC 59.308 47.826 0.00 0.00 0.00 3.67
370 381 5.299949 AGCCCTCAAATGTGACAAAAATTC 58.700 37.500 0.00 0.00 0.00 2.17
382 393 6.925718 TGTGACAAAAATTCACACTGACAAAA 59.074 30.769 1.05 0.00 46.64 2.44
383 394 7.601886 TGTGACAAAAATTCACACTGACAAAAT 59.398 29.630 1.05 0.00 46.64 1.82
384 395 7.899330 GTGACAAAAATTCACACTGACAAAATG 59.101 33.333 0.00 0.00 42.58 2.32
386 397 8.545229 ACAAAAATTCACACTGACAAAATGAA 57.455 26.923 0.00 0.00 34.03 2.57
387 398 9.165035 ACAAAAATTCACACTGACAAAATGAAT 57.835 25.926 0.00 0.00 40.77 2.57
417 428 3.439857 TCCAGGACTTAGCTGCAAAAT 57.560 42.857 1.02 0.00 0.00 1.82
480 492 5.163764 CCTGTTCCAAAAAGAAAAGGCAAAC 60.164 40.000 0.00 0.00 42.89 2.93
484 505 6.493449 TCCAAAAAGAAAAGGCAAACAAAG 57.507 33.333 0.00 0.00 0.00 2.77
563 584 0.602905 AAGAGCAACGGAAACCCTCG 60.603 55.000 0.00 0.00 0.00 4.63
643 667 2.022240 GCCCACTCCGATCTCTCCAC 62.022 65.000 0.00 0.00 0.00 4.02
652 680 2.529632 CGATCTCTCCACCATATCCCA 58.470 52.381 0.00 0.00 0.00 4.37
656 684 0.647738 TCTCCACCATATCCCACCCT 59.352 55.000 0.00 0.00 0.00 4.34
679 724 4.471386 TGAGAATTTCCCTCGGATTTCTCT 59.529 41.667 22.02 7.92 43.74 3.10
871 932 2.023181 CGATTGATTGCGTGCCGG 59.977 61.111 0.00 0.00 0.00 6.13
1125 1196 4.426112 GCCAAAGGCGCCTGCTTC 62.426 66.667 33.60 16.39 39.62 3.86
1278 1349 3.797353 TTCAGGAGGGCGGATGGC 61.797 66.667 0.00 0.00 42.51 4.40
1290 1361 3.272334 GATGGCGGTGATGGCGAC 61.272 66.667 0.00 0.00 37.19 5.19
1317 1388 4.162690 ATCAGGGCGCGGGTTCTC 62.163 66.667 8.83 0.00 0.00 2.87
1346 1417 1.374252 GGCAGTTCGTCCGTGATGT 60.374 57.895 0.00 0.00 0.00 3.06
1392 1463 1.811266 CGCGAAGAGTGTGGATGGG 60.811 63.158 0.00 0.00 0.00 4.00
1401 1472 3.219198 GTGGATGGGAATGGCGCC 61.219 66.667 22.73 22.73 0.00 6.53
1403 1474 2.075566 TGGATGGGAATGGCGCCTA 61.076 57.895 29.70 14.84 0.00 3.93
1461 1532 0.535335 TGCCGACTAAGATGGTGGTC 59.465 55.000 0.00 0.00 0.00 4.02
1464 1535 0.866061 CGACTAAGATGGTGGTCGCG 60.866 60.000 0.00 0.00 43.34 5.87
1523 1594 9.534565 TCTTTGTAATATAGTTGTGCATCTCTC 57.465 33.333 0.00 0.00 0.00 3.20
1524 1595 9.317936 CTTTGTAATATAGTTGTGCATCTCTCA 57.682 33.333 0.00 0.00 0.00 3.27
1525 1596 9.836864 TTTGTAATATAGTTGTGCATCTCTCAT 57.163 29.630 0.00 0.00 0.00 2.90
1542 1613 5.889853 TCTCTCATTTATGCAAAGGCTGAAT 59.110 36.000 0.00 0.00 41.91 2.57
1551 1622 4.808558 TGCAAAGGCTGAATTTACATGTC 58.191 39.130 0.00 0.00 41.91 3.06
1552 1623 4.280425 TGCAAAGGCTGAATTTACATGTCA 59.720 37.500 0.00 0.00 41.91 3.58
1557 1628 4.082571 AGGCTGAATTTACATGTCAGTTGC 60.083 41.667 0.00 0.00 40.76 4.17
1564 1639 9.356433 TGAATTTACATGTCAGTTGCATAAATG 57.644 29.630 0.00 0.00 33.40 2.32
1581 1656 7.035612 GCATAAATGGTTCCTTTCTTTAGTGG 58.964 38.462 0.00 0.00 0.00 4.00
1582 1657 7.309805 GCATAAATGGTTCCTTTCTTTAGTGGT 60.310 37.037 0.00 0.00 0.00 4.16
1589 1664 4.211920 TCCTTTCTTTAGTGGTTGGGTTG 58.788 43.478 0.00 0.00 0.00 3.77
1593 1668 3.153919 TCTTTAGTGGTTGGGTTGCATC 58.846 45.455 0.00 0.00 0.00 3.91
1594 1669 2.666272 TTAGTGGTTGGGTTGCATCA 57.334 45.000 0.00 0.00 0.00 3.07
1595 1670 2.666272 TAGTGGTTGGGTTGCATCAA 57.334 45.000 0.00 0.00 0.00 2.57
1622 1697 8.599774 GCTTAGTCTAGAATCAAACTGTGAATC 58.400 37.037 0.00 0.00 40.50 2.52
1634 1709 9.912634 ATCAAACTGTGAATCGAAAATTATTGT 57.087 25.926 0.00 0.00 40.50 2.71
1734 1811 6.207221 TCATTATGGTGCTGGTGCTATTTATG 59.793 38.462 0.00 0.00 40.48 1.90
2031 2108 5.762825 ATCAAATGCACTGTATGACATCC 57.237 39.130 0.00 0.00 0.00 3.51
2162 2239 6.073003 CCAAAATCTTTCTTCGTTCTGTAGCT 60.073 38.462 0.00 0.00 0.00 3.32
2234 2311 7.227314 CAGTTTATCTTCTATTATGTGCTGCCA 59.773 37.037 0.00 0.00 0.00 4.92
2247 2324 2.165030 GTGCTGCCAGCTTAATGACATT 59.835 45.455 18.96 5.87 42.97 2.71
2513 2592 7.687005 TGATTTTTAAAACTGCCGTTTACTG 57.313 32.000 6.68 0.00 42.28 2.74
2516 2595 4.816786 TTAAAACTGCCGTTTACTGTCC 57.183 40.909 6.68 0.00 42.28 4.02
2664 2743 1.377536 GCATGAGGGTTCTGCTCTTC 58.622 55.000 0.00 0.00 33.15 2.87
2781 2860 1.592400 TTCTCTCGTGGGTAGCACCG 61.592 60.000 0.00 0.00 39.83 4.94
2800 2883 2.093764 CCGGAGAGCTGACATTCTTCTT 60.094 50.000 0.00 0.00 0.00 2.52
2801 2884 3.594134 CGGAGAGCTGACATTCTTCTTT 58.406 45.455 0.00 0.00 0.00 2.52
2803 2886 4.322567 GGAGAGCTGACATTCTTCTTTGT 58.677 43.478 0.00 0.00 0.00 2.83
2804 2887 4.391523 GGAGAGCTGACATTCTTCTTTGTC 59.608 45.833 0.00 0.00 42.05 3.18
2805 2888 4.322567 AGAGCTGACATTCTTCTTTGTCC 58.677 43.478 0.00 0.00 41.22 4.02
2806 2889 3.070018 AGCTGACATTCTTCTTTGTCCG 58.930 45.455 0.00 0.00 41.22 4.79
2807 2890 3.067106 GCTGACATTCTTCTTTGTCCGA 58.933 45.455 0.00 0.00 41.22 4.55
2808 2891 3.686726 GCTGACATTCTTCTTTGTCCGAT 59.313 43.478 0.00 0.00 41.22 4.18
2812 2895 4.641396 ACATTCTTCTTTGTCCGATGTGA 58.359 39.130 0.00 0.00 0.00 3.58
2858 2941 6.453943 CAGACAAGATCTCACTTTCTGAAGA 58.546 40.000 0.00 0.00 37.29 2.87
2908 2991 8.544622 TCTCAATACATAAACATGTCAAGGGTA 58.455 33.333 0.00 0.00 36.08 3.69
2909 2992 9.173021 CTCAATACATAAACATGTCAAGGGTAA 57.827 33.333 0.00 0.00 36.08 2.85
2910 2993 9.521841 TCAATACATAAACATGTCAAGGGTAAA 57.478 29.630 0.00 0.00 36.08 2.01
2911 2994 9.787532 CAATACATAAACATGTCAAGGGTAAAG 57.212 33.333 0.00 0.00 36.08 1.85
2912 2995 9.528489 AATACATAAACATGTCAAGGGTAAAGT 57.472 29.630 0.00 0.00 36.08 2.66
2993 3091 1.002069 TGGGTGGAAGGCAATCAGAT 58.998 50.000 0.00 0.00 0.00 2.90
3054 3152 1.341209 ACAGTCACACGCTGAAGATCA 59.659 47.619 0.00 0.00 37.40 2.92
3188 3290 7.631510 TCTTATGAATTGGATCCTATGTCCA 57.368 36.000 14.23 10.35 43.77 4.02
3196 3298 2.896685 GGATCCTATGTCCAGAGTCCTG 59.103 54.545 3.84 0.00 40.09 3.86
3197 3299 3.437198 GGATCCTATGTCCAGAGTCCTGA 60.437 52.174 3.84 0.00 43.02 3.86
3198 3300 3.304911 TCCTATGTCCAGAGTCCTGAG 57.695 52.381 0.00 0.00 43.02 3.35
3199 3301 2.583101 TCCTATGTCCAGAGTCCTGAGT 59.417 50.000 0.00 0.00 43.02 3.41
3200 3302 2.955660 CCTATGTCCAGAGTCCTGAGTC 59.044 54.545 0.00 0.00 43.02 3.36
3201 3303 1.859302 ATGTCCAGAGTCCTGAGTCC 58.141 55.000 0.00 0.00 43.02 3.85
3202 3304 0.780637 TGTCCAGAGTCCTGAGTCCT 59.219 55.000 0.00 0.00 43.02 3.85
3203 3305 1.181786 GTCCAGAGTCCTGAGTCCTG 58.818 60.000 0.00 0.00 43.02 3.86
3204 3306 1.076438 TCCAGAGTCCTGAGTCCTGA 58.924 55.000 0.00 0.00 43.02 3.86
3205 3307 1.181786 CCAGAGTCCTGAGTCCTGAC 58.818 60.000 0.00 1.83 43.02 3.51
3206 3308 1.548809 CCAGAGTCCTGAGTCCTGACA 60.549 57.143 10.66 0.00 43.02 3.58
3216 3322 2.301870 TGAGTCCTGACATGTGGTTACC 59.698 50.000 1.15 0.00 0.00 2.85
3255 3361 3.011119 CCCAAATGGTTAATCCGTTCGA 58.989 45.455 0.00 0.00 43.90 3.71
3258 3364 5.393678 CCCAAATGGTTAATCCGTTCGATTT 60.394 40.000 0.00 0.00 43.90 2.17
3320 3426 5.280521 GGAAGGGAGTGATGAGGTAGAAAAA 60.281 44.000 0.00 0.00 0.00 1.94
3421 3527 6.959361 TCTGTTCTTACAAATCTCAAAGCAC 58.041 36.000 0.00 0.00 32.92 4.40
3492 3599 1.202698 GGTGGAGACCTATGACATGCC 60.203 57.143 0.00 0.00 39.47 4.40
3533 3640 8.246180 AGAATACTTGCAAGAATACAAACCATG 58.754 33.333 32.50 2.08 0.00 3.66
3554 3661 2.353889 GCACTCACCATATGCACTTGAG 59.646 50.000 15.12 15.12 39.23 3.02
3567 3674 3.139850 GCACTTGAGATATCAGCAGCAT 58.860 45.455 5.32 0.00 0.00 3.79
3610 3717 0.034896 GACAACGGGGTCATGTGAGT 59.965 55.000 4.12 0.00 37.73 3.41
3633 3740 4.876107 TCCTGGAGTCGCTCATAATTTTTC 59.124 41.667 8.71 0.00 31.08 2.29
3682 3814 3.615155 GCTTTTGCTCCATCCTAGTCTT 58.385 45.455 0.00 0.00 43.35 3.01
3742 3874 3.118738 GGTTCATCACCCGAACTCACTAT 60.119 47.826 0.00 0.00 41.99 2.12
3754 3886 9.901172 ACCCGAACTCACTATTTTTCTAAATAT 57.099 29.630 0.00 0.00 36.05 1.28
3789 3921 9.511272 TCATGCTGCAAGTAAATATCATATTCT 57.489 29.630 6.36 0.00 35.30 2.40
3790 3922 9.770503 CATGCTGCAAGTAAATATCATATTCTC 57.229 33.333 6.36 0.00 35.30 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 9.819267 CCTCCGTTTCTAAATATAAGTCTTTCT 57.181 33.333 0.00 0.00 0.00 2.52
17 18 9.043079 CCCTCCGTTTCTAAATATAAGTCTTTC 57.957 37.037 0.00 0.00 0.00 2.62
18 19 8.765517 TCCCTCCGTTTCTAAATATAAGTCTTT 58.234 33.333 0.00 0.00 0.00 2.52
19 20 8.315220 TCCCTCCGTTTCTAAATATAAGTCTT 57.685 34.615 0.00 0.00 0.00 3.01
20 21 7.564292 ACTCCCTCCGTTTCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
21 22 7.724287 ACTCCCTCCGTTTCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
22 23 7.672122 ACTCCCTCCGTTTCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
23 24 8.305317 CCTACTCCCTCCGTTTCTAAATATAAG 58.695 40.741 0.00 0.00 0.00 1.73
24 25 7.786464 ACCTACTCCCTCCGTTTCTAAATATAA 59.214 37.037 0.00 0.00 0.00 0.98
25 26 7.300658 ACCTACTCCCTCCGTTTCTAAATATA 58.699 38.462 0.00 0.00 0.00 0.86
26 27 6.141790 ACCTACTCCCTCCGTTTCTAAATAT 58.858 40.000 0.00 0.00 0.00 1.28
27 28 5.522641 ACCTACTCCCTCCGTTTCTAAATA 58.477 41.667 0.00 0.00 0.00 1.40
28 29 4.359996 ACCTACTCCCTCCGTTTCTAAAT 58.640 43.478 0.00 0.00 0.00 1.40
29 30 3.766051 GACCTACTCCCTCCGTTTCTAAA 59.234 47.826 0.00 0.00 0.00 1.85
30 31 3.245371 TGACCTACTCCCTCCGTTTCTAA 60.245 47.826 0.00 0.00 0.00 2.10
31 32 2.309755 TGACCTACTCCCTCCGTTTCTA 59.690 50.000 0.00 0.00 0.00 2.10
32 33 1.076677 TGACCTACTCCCTCCGTTTCT 59.923 52.381 0.00 0.00 0.00 2.52
33 34 1.553706 TGACCTACTCCCTCCGTTTC 58.446 55.000 0.00 0.00 0.00 2.78
34 35 2.249309 ATGACCTACTCCCTCCGTTT 57.751 50.000 0.00 0.00 0.00 3.60
35 36 2.424523 CCTATGACCTACTCCCTCCGTT 60.425 54.545 0.00 0.00 0.00 4.44
36 37 1.145325 CCTATGACCTACTCCCTCCGT 59.855 57.143 0.00 0.00 0.00 4.69
37 38 1.145325 ACCTATGACCTACTCCCTCCG 59.855 57.143 0.00 0.00 0.00 4.63
38 39 3.331718 AACCTATGACCTACTCCCTCC 57.668 52.381 0.00 0.00 0.00 4.30
39 40 3.388350 CCAAACCTATGACCTACTCCCTC 59.612 52.174 0.00 0.00 0.00 4.30
40 41 3.385115 CCAAACCTATGACCTACTCCCT 58.615 50.000 0.00 0.00 0.00 4.20
41 42 2.438392 CCCAAACCTATGACCTACTCCC 59.562 54.545 0.00 0.00 0.00 4.30
42 43 3.134262 GTCCCAAACCTATGACCTACTCC 59.866 52.174 0.00 0.00 0.00 3.85
43 44 4.031611 AGTCCCAAACCTATGACCTACTC 58.968 47.826 0.00 0.00 0.00 2.59
44 45 4.076175 AGTCCCAAACCTATGACCTACT 57.924 45.455 0.00 0.00 0.00 2.57
45 46 4.961099 AGTAGTCCCAAACCTATGACCTAC 59.039 45.833 0.00 0.00 0.00 3.18
46 47 5.216665 AGTAGTCCCAAACCTATGACCTA 57.783 43.478 0.00 0.00 0.00 3.08
47 48 4.076175 AGTAGTCCCAAACCTATGACCT 57.924 45.455 0.00 0.00 0.00 3.85
48 49 5.424573 ACTTAGTAGTCCCAAACCTATGACC 59.575 44.000 0.00 0.00 0.00 4.02
49 50 6.541934 ACTTAGTAGTCCCAAACCTATGAC 57.458 41.667 0.00 0.00 0.00 3.06
50 51 7.456902 AGAAACTTAGTAGTCCCAAACCTATGA 59.543 37.037 0.00 0.00 31.99 2.15
51 52 7.621796 AGAAACTTAGTAGTCCCAAACCTATG 58.378 38.462 0.00 0.00 31.99 2.23
52 53 7.809880 AGAAACTTAGTAGTCCCAAACCTAT 57.190 36.000 0.00 0.00 31.99 2.57
53 54 8.755977 CATAGAAACTTAGTAGTCCCAAACCTA 58.244 37.037 0.00 0.00 31.99 3.08
54 55 7.456902 TCATAGAAACTTAGTAGTCCCAAACCT 59.543 37.037 0.00 0.00 31.99 3.50
55 56 7.618137 TCATAGAAACTTAGTAGTCCCAAACC 58.382 38.462 0.00 0.00 31.99 3.27
56 57 9.498176 TTTCATAGAAACTTAGTAGTCCCAAAC 57.502 33.333 0.00 0.00 31.99 2.93
86 87 8.945057 GCTATCTCAAACTCAAAGAAAGAGAAT 58.055 33.333 0.00 0.00 36.91 2.40
87 88 8.153550 AGCTATCTCAAACTCAAAGAAAGAGAA 58.846 33.333 0.00 0.00 36.91 2.87
88 89 7.675062 AGCTATCTCAAACTCAAAGAAAGAGA 58.325 34.615 0.00 0.00 36.91 3.10
89 90 7.903995 AGCTATCTCAAACTCAAAGAAAGAG 57.096 36.000 0.00 0.00 39.04 2.85
90 91 7.819900 GGTAGCTATCTCAAACTCAAAGAAAGA 59.180 37.037 0.00 0.00 0.00 2.52
91 92 7.065204 GGGTAGCTATCTCAAACTCAAAGAAAG 59.935 40.741 3.53 0.00 0.00 2.62
92 93 6.879458 GGGTAGCTATCTCAAACTCAAAGAAA 59.121 38.462 3.53 0.00 0.00 2.52
93 94 6.407202 GGGTAGCTATCTCAAACTCAAAGAA 58.593 40.000 3.53 0.00 0.00 2.52
94 95 5.394224 CGGGTAGCTATCTCAAACTCAAAGA 60.394 44.000 3.53 0.00 0.00 2.52
95 96 4.806247 CGGGTAGCTATCTCAAACTCAAAG 59.194 45.833 3.53 0.00 0.00 2.77
96 97 4.755411 CGGGTAGCTATCTCAAACTCAAA 58.245 43.478 3.53 0.00 0.00 2.69
97 98 3.430374 GCGGGTAGCTATCTCAAACTCAA 60.430 47.826 3.53 0.00 44.04 3.02
98 99 2.100916 GCGGGTAGCTATCTCAAACTCA 59.899 50.000 3.53 0.00 44.04 3.41
99 100 2.745102 GCGGGTAGCTATCTCAAACTC 58.255 52.381 3.53 0.00 44.04 3.01
100 101 2.892784 GCGGGTAGCTATCTCAAACT 57.107 50.000 3.53 0.00 44.04 2.66
109 110 9.009557 CAATGTGTTGAAATAAGCGGGTAGCTA 62.010 40.741 0.00 0.00 46.50 3.32
111 112 6.180680 CAATGTGTTGAAATAAGCGGGTAGC 61.181 44.000 0.00 0.00 41.20 3.58
112 113 5.331902 CAATGTGTTGAAATAAGCGGGTAG 58.668 41.667 0.00 0.00 37.53 3.18
113 114 4.380023 GCAATGTGTTGAAATAAGCGGGTA 60.380 41.667 0.00 0.00 37.53 3.69
114 115 3.613910 GCAATGTGTTGAAATAAGCGGGT 60.614 43.478 0.00 0.00 37.53 5.28
115 116 2.923020 GCAATGTGTTGAAATAAGCGGG 59.077 45.455 0.00 0.00 37.53 6.13
116 117 3.573598 TGCAATGTGTTGAAATAAGCGG 58.426 40.909 0.00 0.00 37.53 5.52
117 118 6.257423 TCTATGCAATGTGTTGAAATAAGCG 58.743 36.000 0.00 0.00 37.53 4.68
118 119 8.375465 GTTTCTATGCAATGTGTTGAAATAAGC 58.625 33.333 0.00 0.00 37.53 3.09
119 120 8.863049 GGTTTCTATGCAATGTGTTGAAATAAG 58.137 33.333 0.00 0.00 37.53 1.73
120 121 8.584157 AGGTTTCTATGCAATGTGTTGAAATAA 58.416 29.630 0.00 0.00 37.53 1.40
121 122 8.121305 AGGTTTCTATGCAATGTGTTGAAATA 57.879 30.769 0.00 0.00 37.53 1.40
122 123 6.996509 AGGTTTCTATGCAATGTGTTGAAAT 58.003 32.000 0.00 0.00 37.53 2.17
123 124 6.040278 TGAGGTTTCTATGCAATGTGTTGAAA 59.960 34.615 0.00 0.00 37.53 2.69
124 125 5.534278 TGAGGTTTCTATGCAATGTGTTGAA 59.466 36.000 0.00 0.00 37.53 2.69
125 126 5.069318 TGAGGTTTCTATGCAATGTGTTGA 58.931 37.500 0.00 0.00 37.53 3.18
126 127 5.375417 TGAGGTTTCTATGCAATGTGTTG 57.625 39.130 0.00 0.00 38.39 3.33
127 128 6.594788 AATGAGGTTTCTATGCAATGTGTT 57.405 33.333 0.00 0.00 0.00 3.32
128 129 6.209192 TGAAATGAGGTTTCTATGCAATGTGT 59.791 34.615 0.00 0.00 45.22 3.72
152 153 7.542130 CGGATTGGACTTCTTAAAGGAAAAATG 59.458 37.037 0.00 0.00 36.78 2.32
163 164 3.259064 CGAAAGCGGATTGGACTTCTTA 58.741 45.455 0.00 0.00 0.00 2.10
192 193 6.669591 TGGAGAATTGAGAAGAGAAGGTGATA 59.330 38.462 0.00 0.00 0.00 2.15
240 241 5.666203 CATTACGTGCATTTGGATAGTACG 58.334 41.667 0.00 0.00 36.28 3.67
261 262 8.266363 ACCATGGGATATTTAGAATTTTGCAT 57.734 30.769 18.09 0.00 0.00 3.96
279 281 0.179073 GAGATGTCACCGACCATGGG 60.179 60.000 18.09 0.00 0.00 4.00
287 289 4.038522 AGAACATAGGATGAGATGTCACCG 59.961 45.833 0.00 0.00 35.21 4.94
315 325 7.706607 GGATTGCAGGATTTAAAATGTAGGAAC 59.293 37.037 0.00 0.00 0.00 3.62
383 394 9.561069 GCTAAGTCCTGGAAAATTAGATATTCA 57.439 33.333 20.42 0.00 0.00 2.57
384 395 9.785982 AGCTAAGTCCTGGAAAATTAGATATTC 57.214 33.333 20.42 8.65 0.00 1.75
386 397 7.663493 GCAGCTAAGTCCTGGAAAATTAGATAT 59.337 37.037 20.42 8.79 0.00 1.63
387 398 6.992715 GCAGCTAAGTCCTGGAAAATTAGATA 59.007 38.462 20.42 0.00 0.00 1.98
388 399 5.825151 GCAGCTAAGTCCTGGAAAATTAGAT 59.175 40.000 20.42 14.88 0.00 1.98
389 400 5.186198 GCAGCTAAGTCCTGGAAAATTAGA 58.814 41.667 20.42 0.00 0.00 2.10
391 402 4.917385 TGCAGCTAAGTCCTGGAAAATTA 58.083 39.130 0.00 0.00 0.00 1.40
392 403 3.766545 TGCAGCTAAGTCCTGGAAAATT 58.233 40.909 0.00 0.00 0.00 1.82
393 404 3.439857 TGCAGCTAAGTCCTGGAAAAT 57.560 42.857 0.00 0.00 0.00 1.82
397 408 2.949177 TTTTGCAGCTAAGTCCTGGA 57.051 45.000 0.00 0.00 0.00 3.86
398 409 4.009675 TGTATTTTGCAGCTAAGTCCTGG 58.990 43.478 0.00 0.00 0.00 4.45
417 428 4.640789 TTTCTTTCGCCTTTTTGCTGTA 57.359 36.364 0.00 0.00 0.00 2.74
480 492 1.026718 GGTGATCGTGGGCTCCTTTG 61.027 60.000 0.00 0.00 0.00 2.77
563 584 1.347817 CTCTCGTGCTCTGCCGTTTC 61.348 60.000 0.00 0.00 0.00 2.78
612 636 1.228862 AGTGGGCAAGGCGGATTTT 60.229 52.632 0.00 0.00 0.00 1.82
643 667 4.401925 GAAATTCTCAGGGTGGGATATGG 58.598 47.826 0.00 0.00 0.00 2.74
652 680 0.912486 CCGAGGGAAATTCTCAGGGT 59.088 55.000 0.00 0.00 0.00 4.34
656 684 4.770795 GAGAAATCCGAGGGAAATTCTCA 58.229 43.478 24.17 0.00 46.40 3.27
679 724 2.031944 CCGAACTCAGATCGCGAATCTA 60.032 50.000 15.24 0.00 43.13 1.98
821 882 3.152400 AGGATCCCGTACCGTGCC 61.152 66.667 8.55 0.00 0.00 5.01
822 883 2.106332 CAGGATCCCGTACCGTGC 59.894 66.667 8.55 0.00 0.00 5.34
823 884 2.106332 GCAGGATCCCGTACCGTG 59.894 66.667 8.55 0.00 0.00 4.94
824 885 3.152400 GGCAGGATCCCGTACCGT 61.152 66.667 8.55 0.00 0.00 4.83
825 886 4.280494 CGGCAGGATCCCGTACCG 62.280 72.222 8.55 12.79 40.84 4.02
871 932 2.512053 GCGAAATCTAGAGAGCGCC 58.488 57.895 19.22 0.00 37.20 6.53
1125 1196 2.960170 GAGTGGCCAAAGCTGCAG 59.040 61.111 7.24 10.11 39.73 4.41
1215 1286 4.399395 CCCTTCAGGCTCAGCGCA 62.399 66.667 11.47 0.00 41.67 6.09
1290 1361 4.899239 GCCCTGATCTCCACCGCG 62.899 72.222 0.00 0.00 0.00 6.46
1346 1417 1.533033 TCCGACAGCTGAACCTCCA 60.533 57.895 23.35 0.00 0.00 3.86
1376 1447 2.283298 CATTCCCATCCACACTCTTCG 58.717 52.381 0.00 0.00 0.00 3.79
1410 1481 1.449601 GAAATCGAGGCGCTTCCCA 60.450 57.895 14.49 0.70 34.51 4.37
1461 1532 0.374758 CTTCATCCACATCAACCGCG 59.625 55.000 0.00 0.00 0.00 6.46
1464 1535 4.949856 ACAATACCTTCATCCACATCAACC 59.050 41.667 0.00 0.00 0.00 3.77
1508 1579 6.609237 GCATAAATGAGAGATGCACAACTA 57.391 37.500 0.00 0.00 44.35 2.24
1522 1593 7.609960 TGTAAATTCAGCCTTTGCATAAATGA 58.390 30.769 0.00 0.00 41.13 2.57
1523 1594 7.830940 TGTAAATTCAGCCTTTGCATAAATG 57.169 32.000 0.00 0.00 41.13 2.32
1524 1595 8.042515 ACATGTAAATTCAGCCTTTGCATAAAT 58.957 29.630 0.00 0.00 36.98 1.40
1525 1596 7.385267 ACATGTAAATTCAGCCTTTGCATAAA 58.615 30.769 0.00 0.00 36.98 1.40
1532 1603 6.449698 CAACTGACATGTAAATTCAGCCTTT 58.550 36.000 10.52 0.00 40.46 3.11
1542 1613 7.225784 ACCATTTATGCAACTGACATGTAAA 57.774 32.000 0.00 0.00 0.00 2.01
1551 1622 6.029346 AGAAAGGAACCATTTATGCAACTG 57.971 37.500 0.00 0.00 0.00 3.16
1552 1623 6.670695 AAGAAAGGAACCATTTATGCAACT 57.329 33.333 0.00 0.00 0.00 3.16
1557 1628 8.122472 ACCACTAAAGAAAGGAACCATTTATG 57.878 34.615 0.00 0.00 0.00 1.90
1564 1639 3.572682 CCCAACCACTAAAGAAAGGAACC 59.427 47.826 0.00 0.00 0.00 3.62
1581 1656 2.558359 ACTAAGCTTGATGCAACCCAAC 59.442 45.455 9.86 0.00 45.94 3.77
1582 1657 2.819608 GACTAAGCTTGATGCAACCCAA 59.180 45.455 9.86 0.00 45.94 4.12
1589 1664 7.279758 AGTTTGATTCTAGACTAAGCTTGATGC 59.720 37.037 9.86 0.00 43.29 3.91
1593 1668 7.600375 TCACAGTTTGATTCTAGACTAAGCTTG 59.400 37.037 9.86 1.57 0.00 4.01
1594 1669 7.671302 TCACAGTTTGATTCTAGACTAAGCTT 58.329 34.615 3.48 3.48 0.00 3.74
1595 1670 7.233389 TCACAGTTTGATTCTAGACTAAGCT 57.767 36.000 0.00 0.00 0.00 3.74
1715 1792 3.278574 GACATAAATAGCACCAGCACCA 58.721 45.455 0.00 0.00 45.49 4.17
1716 1793 2.287915 CGACATAAATAGCACCAGCACC 59.712 50.000 0.00 0.00 45.49 5.01
1717 1794 2.936498 ACGACATAAATAGCACCAGCAC 59.064 45.455 0.00 0.00 45.49 4.40
1718 1795 2.935849 CACGACATAAATAGCACCAGCA 59.064 45.455 0.00 0.00 45.49 4.41
1719 1796 2.286418 GCACGACATAAATAGCACCAGC 60.286 50.000 0.00 0.00 42.56 4.85
1720 1797 2.935849 TGCACGACATAAATAGCACCAG 59.064 45.455 0.00 0.00 0.00 4.00
1734 1811 0.235926 GCTTCCAAGAACTGCACGAC 59.764 55.000 0.00 0.00 0.00 4.34
2031 2108 5.670341 GCTGCAGCAATTTAGAAAAATGCTG 60.670 40.000 33.36 26.67 46.36 4.41
2162 2239 7.650890 TGATTGACTTACGTTACTACAGACAA 58.349 34.615 0.00 0.00 0.00 3.18
2234 2311 7.765695 TCAAAAGGAAGAATGTCATTAAGCT 57.234 32.000 0.00 0.00 0.00 3.74
2513 2592 4.037446 TGTTGTGACAGCTTAAAATGGGAC 59.963 41.667 0.29 0.00 0.00 4.46
2516 2595 5.531634 ACATGTTGTGACAGCTTAAAATGG 58.468 37.500 0.29 0.00 39.58 3.16
2781 2860 4.322567 ACAAAGAAGAATGTCAGCTCTCC 58.677 43.478 0.00 0.00 0.00 3.71
2800 2883 1.206849 TGCTGCTATCACATCGGACAA 59.793 47.619 0.00 0.00 0.00 3.18
2801 2884 0.823460 TGCTGCTATCACATCGGACA 59.177 50.000 0.00 0.00 0.00 4.02
2803 2886 1.402787 TCTGCTGCTATCACATCGGA 58.597 50.000 0.00 0.00 0.00 4.55
2804 2887 2.229675 TTCTGCTGCTATCACATCGG 57.770 50.000 0.00 0.00 0.00 4.18
2805 2888 5.670588 GCATAATTCTGCTGCTATCACATCG 60.671 44.000 8.47 0.00 39.12 3.84
2806 2889 5.629097 GCATAATTCTGCTGCTATCACATC 58.371 41.667 8.47 0.00 39.12 3.06
2807 2890 5.624344 GCATAATTCTGCTGCTATCACAT 57.376 39.130 8.47 0.00 39.12 3.21
2858 2941 4.405358 TGTTGAAAGGGAAGCAACATCTTT 59.595 37.500 0.00 0.00 44.73 2.52
2993 3091 4.251103 TCTCAGGGCATACTAGACTGAA 57.749 45.455 0.00 0.00 37.69 3.02
3054 3152 8.146412 AGAAGCTAACATGCTGAAAAAGAATTT 58.854 29.630 0.00 0.00 43.24 1.82
3188 3290 2.225242 ACATGTCAGGACTCAGGACTCT 60.225 50.000 0.00 0.00 32.84 3.24
3196 3298 2.674177 CGGTAACCACATGTCAGGACTC 60.674 54.545 9.12 0.00 0.00 3.36
3197 3299 1.275291 CGGTAACCACATGTCAGGACT 59.725 52.381 9.12 0.00 0.00 3.85
3198 3300 1.001633 ACGGTAACCACATGTCAGGAC 59.998 52.381 9.12 0.00 0.00 3.85
3199 3301 1.344065 ACGGTAACCACATGTCAGGA 58.656 50.000 9.12 0.00 0.00 3.86
3200 3302 1.804151 CAACGGTAACCACATGTCAGG 59.196 52.381 0.00 0.00 0.00 3.86
3201 3303 1.196808 GCAACGGTAACCACATGTCAG 59.803 52.381 0.00 0.00 0.00 3.51
3202 3304 1.231221 GCAACGGTAACCACATGTCA 58.769 50.000 0.00 0.00 0.00 3.58
3203 3305 0.165079 CGCAACGGTAACCACATGTC 59.835 55.000 0.00 0.00 0.00 3.06
3204 3306 0.533308 ACGCAACGGTAACCACATGT 60.533 50.000 0.00 0.00 0.00 3.21
3205 3307 0.110419 CACGCAACGGTAACCACATG 60.110 55.000 0.00 0.00 0.00 3.21
3206 3308 0.533308 ACACGCAACGGTAACCACAT 60.533 50.000 0.00 0.00 0.00 3.21
3216 3322 1.192980 GGGTACACTTAACACGCAACG 59.807 52.381 0.00 0.00 0.00 4.10
3255 3361 8.001881 TGTGTTTTACAGTGTATTCACCAAAT 57.998 30.769 20.13 0.00 44.83 2.32
3258 3364 6.459024 GCTTGTGTTTTACAGTGTATTCACCA 60.459 38.462 20.13 13.55 44.83 4.17
3376 3482 6.647895 ACAGAGGTATTCGAAAACGTATTTGT 59.352 34.615 0.00 0.00 0.00 2.83
3389 3495 7.759886 TGAGATTTGTAAGAACAGAGGTATTCG 59.240 37.037 0.00 0.00 36.83 3.34
3421 3527 2.461110 GCAACCTGCATCCGTACCG 61.461 63.158 0.00 0.00 44.26 4.02
3436 3542 1.529010 CTTCCAGCCACAGGTGCAA 60.529 57.895 0.00 0.00 40.28 4.08
3445 3551 0.251474 ATGCTTCTTGCTTCCAGCCA 60.251 50.000 0.00 0.00 41.51 4.75
3476 3583 4.095483 CAGTTTTGGCATGTCATAGGTCTC 59.905 45.833 0.00 0.00 0.00 3.36
3492 3599 5.824904 AGTATTCTGGCATAGCAGTTTTG 57.175 39.130 0.00 0.00 0.00 2.44
3533 3640 2.353889 CTCAAGTGCATATGGTGAGTGC 59.646 50.000 4.56 0.00 39.26 4.40
3554 3661 2.038164 TGGTGAGGATGCTGCTGATATC 59.962 50.000 0.00 0.00 0.00 1.63
3567 3674 1.065410 TTTCCCCAGCTTGGTGAGGA 61.065 55.000 2.68 0.00 35.17 3.71
3610 3717 4.487714 AAAATTATGAGCGACTCCAGGA 57.512 40.909 4.73 0.00 0.00 3.86
3633 3740 7.468906 CGAAAGGATCCTAGTCCAACTAAGTAG 60.469 44.444 16.55 0.00 40.90 2.57
3682 3814 4.009675 GTGCCAAGGACAAGATATGTTCA 58.990 43.478 0.00 0.00 44.12 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.