Multiple sequence alignment - TraesCS7D01G157400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G157400 chr7D 100.000 3666 0 0 1 3666 105211789 105215454 0.000000e+00 6770
1 TraesCS7D01G157400 chr7D 98.452 1098 15 1 643 1738 428978084 428976987 0.000000e+00 1932
2 TraesCS7D01G157400 chr3D 98.272 1505 23 3 1737 3240 94447462 94448964 0.000000e+00 2632
3 TraesCS7D01G157400 chr3D 97.807 1505 15 2 1737 3240 405844178 405845665 0.000000e+00 2580
4 TraesCS7D01G157400 chr3D 98.226 1466 15 4 1726 3182 502027235 502025772 0.000000e+00 2553
5 TraesCS7D01G157400 chr3D 98.739 1269 11 1 1737 3005 367348706 367349969 0.000000e+00 2250
6 TraesCS7D01G157400 chr3D 98.270 1098 17 1 643 1738 502028363 502027266 0.000000e+00 1921
7 TraesCS7D01G157400 chr3D 97.649 1106 16 7 643 1738 367347561 367348666 0.000000e+00 1890
8 TraesCS7D01G157400 chr3D 95.724 421 12 4 3249 3666 287304657 287305074 0.000000e+00 673
9 TraesCS7D01G157400 chr3D 95.487 421 13 4 3249 3666 502020128 502019711 0.000000e+00 667
10 TraesCS7D01G157400 chr3D 94.419 430 11 8 3249 3666 94450558 94450986 0.000000e+00 649
11 TraesCS7D01G157400 chr3D 93.541 418 21 4 3249 3666 210997814 210998225 5.200000e-173 617
12 TraesCS7D01G157400 chr2D 96.859 1528 26 6 1737 3245 601043939 601042415 0.000000e+00 2536
13 TraesCS7D01G157400 chr2D 95.764 1511 53 8 1737 3240 158255282 158256788 0.000000e+00 2425
14 TraesCS7D01G157400 chr2D 98.190 1105 10 3 643 1738 537200733 537201836 0.000000e+00 1921
15 TraesCS7D01G157400 chr2D 97.830 1106 14 7 643 1738 158254137 158255242 0.000000e+00 1901
16 TraesCS7D01G157400 chr2D 97.649 1106 16 3 643 1738 2328936 2327831 0.000000e+00 1890
17 TraesCS7D01G157400 chr2D 95.012 421 15 4 3249 3666 2320067 2319650 0.000000e+00 656
18 TraesCS7D01G157400 chr2D 94.019 418 13 1 3249 3666 158259116 158259521 1.120000e-174 623
19 TraesCS7D01G157400 chr2D 91.866 418 10 5 3249 3666 360458378 360458771 2.470000e-156 562
20 TraesCS7D01G157400 chr2D 91.641 323 21 3 162 482 586967693 586967375 3.360000e-120 442
21 TraesCS7D01G157400 chr2D 92.735 234 16 1 3007 3240 601042604 601042372 1.630000e-88 337
22 TraesCS7D01G157400 chr4D 97.585 1449 18 1 1737 3168 480147725 480146277 0.000000e+00 2466
23 TraesCS7D01G157400 chr4D 96.488 1452 32 3 1737 3171 41948788 41947339 0.000000e+00 2381
24 TraesCS7D01G157400 chr4D 97.740 1106 15 7 643 1738 61989553 61990658 0.000000e+00 1895
25 TraesCS7D01G157400 chr4D 95.694 418 12 4 3249 3666 480144593 480144182 0.000000e+00 667
26 TraesCS7D01G157400 chr4D 90.769 325 22 5 163 484 11579933 11580252 9.410000e-116 427
27 TraesCS7D01G157400 chr6D 97.427 1438 35 2 1737 3174 18601658 18603093 0.000000e+00 2449
28 TraesCS7D01G157400 chr6D 96.744 430 2 1 3249 3666 400560986 400561415 0.000000e+00 706
29 TraesCS7D01G157400 chr5D 99.133 1269 11 0 1737 3005 156738273 156739541 0.000000e+00 2283
30 TraesCS7D01G157400 chr5D 97.736 1104 16 5 644 1738 156737130 156738233 0.000000e+00 1892
31 TraesCS7D01G157400 chr5D 97.561 1107 17 8 642 1738 473113751 473112645 0.000000e+00 1886
32 TraesCS7D01G157400 chr5D 93.213 442 6 9 3249 3666 444165856 444166297 2.400000e-176 628
33 TraesCS7D01G157400 chr5D 84.416 308 35 10 2914 3217 38201200 38201498 1.290000e-74 291
34 TraesCS7D01G157400 chr1D 94.976 418 15 3 3249 3666 318140634 318141045 0.000000e+00 651
35 TraesCS7D01G157400 chr1D 90.826 327 22 5 159 482 225048424 225048745 7.270000e-117 431
36 TraesCS7D01G157400 chr1D 90.578 329 24 4 162 488 443782295 443782618 2.620000e-116 429
37 TraesCS7D01G157400 chr4B 91.667 324 20 4 161 482 323789782 323790100 3.360000e-120 442
38 TraesCS7D01G157400 chr4B 91.077 325 23 3 162 484 370884486 370884806 5.620000e-118 435
39 TraesCS7D01G157400 chr5B 91.022 323 23 3 162 482 384026797 384026479 7.270000e-117 431
40 TraesCS7D01G157400 chr1A 90.994 322 23 4 162 482 520464849 520464533 2.620000e-116 429
41 TraesCS7D01G157400 chr2B 90.769 325 23 4 161 482 195043832 195043512 9.410000e-116 427
42 TraesCS7D01G157400 chr2A 86.503 326 28 9 2917 3240 445749709 445749398 9.750000e-91 344
43 TraesCS7D01G157400 chr2A 86.196 326 29 9 2917 3240 628681017 628681328 4.530000e-89 339
44 TraesCS7D01G157400 chr7A 90.210 143 10 3 1 139 109826647 109826789 2.250000e-42 183


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G157400 chr7D 105211789 105215454 3665 False 6770.000000 6770 100.0000 1 3666 1 chr7D.!!$F1 3665
1 TraesCS7D01G157400 chr7D 428976987 428978084 1097 True 1932.000000 1932 98.4520 643 1738 1 chr7D.!!$R1 1095
2 TraesCS7D01G157400 chr3D 405844178 405845665 1487 False 2580.000000 2580 97.8070 1737 3240 1 chr3D.!!$F3 1503
3 TraesCS7D01G157400 chr3D 502025772 502028363 2591 True 2237.000000 2553 98.2480 643 3182 2 chr3D.!!$R2 2539
4 TraesCS7D01G157400 chr3D 367347561 367349969 2408 False 2070.000000 2250 98.1940 643 3005 2 chr3D.!!$F5 2362
5 TraesCS7D01G157400 chr3D 94447462 94450986 3524 False 1640.500000 2632 96.3455 1737 3666 2 chr3D.!!$F4 1929
6 TraesCS7D01G157400 chr2D 537200733 537201836 1103 False 1921.000000 1921 98.1900 643 1738 1 chr2D.!!$F2 1095
7 TraesCS7D01G157400 chr2D 2327831 2328936 1105 True 1890.000000 1890 97.6490 643 1738 1 chr2D.!!$R2 1095
8 TraesCS7D01G157400 chr2D 158254137 158259521 5384 False 1649.666667 2425 95.8710 643 3666 3 chr2D.!!$F3 3023
9 TraesCS7D01G157400 chr2D 601042372 601043939 1567 True 1436.500000 2536 94.7970 1737 3245 2 chr2D.!!$R4 1508
10 TraesCS7D01G157400 chr4D 41947339 41948788 1449 True 2381.000000 2381 96.4880 1737 3171 1 chr4D.!!$R1 1434
11 TraesCS7D01G157400 chr4D 61989553 61990658 1105 False 1895.000000 1895 97.7400 643 1738 1 chr4D.!!$F2 1095
12 TraesCS7D01G157400 chr4D 480144182 480147725 3543 True 1566.500000 2466 96.6395 1737 3666 2 chr4D.!!$R2 1929
13 TraesCS7D01G157400 chr6D 18601658 18603093 1435 False 2449.000000 2449 97.4270 1737 3174 1 chr6D.!!$F1 1437
14 TraesCS7D01G157400 chr5D 156737130 156739541 2411 False 2087.500000 2283 98.4345 644 3005 2 chr5D.!!$F3 2361
15 TraesCS7D01G157400 chr5D 473112645 473113751 1106 True 1886.000000 1886 97.5610 642 1738 1 chr5D.!!$R1 1096

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
636 637 0.032540 AGCGCTGGCAAAGGAAAAAG 59.967 50.0 10.39 0.0 43.41 2.27 F
637 638 0.249447 GCGCTGGCAAAGGAAAAAGT 60.249 50.0 0.00 0.0 39.62 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2610 2663 4.017958 TCTTCTCCTTCAGCTTCTCCTCTA 60.018 45.833 0.0 0.0 0.00 2.43 R
3246 7410 5.184864 TGCCATGTAATGTTCAAAACTAGGG 59.815 40.000 0.0 0.0 44.81 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 9.541724 GTTTGAAAACAAAAGAGAAATTCAACC 57.458 29.630 1.05 0.00 38.74 3.77
37 38 7.518731 TGAAAACAAAAGAGAAATTCAACCG 57.481 32.000 0.00 0.00 0.00 4.44
38 39 7.093992 TGAAAACAAAAGAGAAATTCAACCGT 58.906 30.769 0.00 0.00 0.00 4.83
39 40 6.885735 AAACAAAAGAGAAATTCAACCGTG 57.114 33.333 0.00 0.00 0.00 4.94
40 41 4.932146 ACAAAAGAGAAATTCAACCGTGG 58.068 39.130 0.00 0.00 0.00 4.94
41 42 4.642885 ACAAAAGAGAAATTCAACCGTGGA 59.357 37.500 0.00 0.00 0.00 4.02
42 43 5.301805 ACAAAAGAGAAATTCAACCGTGGAT 59.698 36.000 0.00 0.00 0.00 3.41
43 44 6.183360 ACAAAAGAGAAATTCAACCGTGGATT 60.183 34.615 0.00 0.00 34.09 3.01
44 45 5.376854 AAGAGAAATTCAACCGTGGATTG 57.623 39.130 0.00 0.00 32.88 2.67
45 46 4.651778 AGAGAAATTCAACCGTGGATTGA 58.348 39.130 0.00 0.00 32.88 2.57
46 47 4.455877 AGAGAAATTCAACCGTGGATTGAC 59.544 41.667 0.00 0.00 32.88 3.18
47 48 3.506067 AGAAATTCAACCGTGGATTGACC 59.494 43.478 0.00 0.00 32.88 4.02
48 49 1.448985 ATTCAACCGTGGATTGACCG 58.551 50.000 0.00 0.00 42.61 4.79
49 50 0.604243 TTCAACCGTGGATTGACCGG 60.604 55.000 0.00 0.00 46.93 5.28
50 51 1.004320 CAACCGTGGATTGACCGGA 60.004 57.895 9.46 0.00 44.41 5.14
51 52 0.604243 CAACCGTGGATTGACCGGAA 60.604 55.000 9.46 0.00 44.41 4.30
52 53 0.326927 AACCGTGGATTGACCGGAAT 59.673 50.000 9.46 0.00 44.41 3.01
53 54 1.196911 ACCGTGGATTGACCGGAATA 58.803 50.000 9.46 0.00 44.41 1.75
54 55 1.766496 ACCGTGGATTGACCGGAATAT 59.234 47.619 9.46 0.00 44.41 1.28
55 56 2.224209 ACCGTGGATTGACCGGAATATC 60.224 50.000 9.46 7.18 44.41 1.63
56 57 2.224185 CCGTGGATTGACCGGAATATCA 60.224 50.000 9.46 0.00 44.41 2.15
57 58 3.462982 CGTGGATTGACCGGAATATCAA 58.537 45.455 9.46 8.28 42.61 2.57
58 59 3.494626 CGTGGATTGACCGGAATATCAAG 59.505 47.826 9.46 0.00 42.61 3.02
59 60 4.451900 GTGGATTGACCGGAATATCAAGT 58.548 43.478 9.46 0.00 42.61 3.16
60 61 4.273480 GTGGATTGACCGGAATATCAAGTG 59.727 45.833 9.46 0.00 42.61 3.16
61 62 4.080582 TGGATTGACCGGAATATCAAGTGT 60.081 41.667 9.46 0.00 42.61 3.55
62 63 4.273480 GGATTGACCGGAATATCAAGTGTG 59.727 45.833 9.46 0.00 38.19 3.82
63 64 2.627945 TGACCGGAATATCAAGTGTGC 58.372 47.619 9.46 0.00 0.00 4.57
64 65 2.027653 TGACCGGAATATCAAGTGTGCA 60.028 45.455 9.46 0.00 0.00 4.57
65 66 3.006940 GACCGGAATATCAAGTGTGCAA 58.993 45.455 9.46 0.00 0.00 4.08
66 67 3.009723 ACCGGAATATCAAGTGTGCAAG 58.990 45.455 9.46 0.00 0.00 4.01
67 68 2.223340 CCGGAATATCAAGTGTGCAAGC 60.223 50.000 0.00 0.00 0.00 4.01
68 69 2.537529 CGGAATATCAAGTGTGCAAGCG 60.538 50.000 0.00 0.00 0.00 4.68
69 70 2.677836 GGAATATCAAGTGTGCAAGCGA 59.322 45.455 0.00 0.00 0.00 4.93
70 71 3.485877 GGAATATCAAGTGTGCAAGCGAC 60.486 47.826 0.00 0.00 0.00 5.19
71 72 2.162319 TATCAAGTGTGCAAGCGACA 57.838 45.000 0.00 0.00 0.00 4.35
72 73 1.308047 ATCAAGTGTGCAAGCGACAA 58.692 45.000 0.00 0.00 0.00 3.18
73 74 0.376852 TCAAGTGTGCAAGCGACAAC 59.623 50.000 0.00 0.00 0.00 3.32
74 75 0.592247 CAAGTGTGCAAGCGACAACC 60.592 55.000 0.00 0.00 0.00 3.77
75 76 0.748005 AAGTGTGCAAGCGACAACCT 60.748 50.000 0.00 0.00 0.00 3.50
76 77 1.160329 AGTGTGCAAGCGACAACCTC 61.160 55.000 0.00 0.00 0.00 3.85
77 78 1.891919 TGTGCAAGCGACAACCTCC 60.892 57.895 0.00 0.00 0.00 4.30
78 79 2.664851 TGCAAGCGACAACCTCCG 60.665 61.111 0.00 0.00 0.00 4.63
84 85 3.041940 CGACAACCTCCGCGCTTT 61.042 61.111 5.56 0.00 0.00 3.51
85 86 2.861006 GACAACCTCCGCGCTTTC 59.139 61.111 5.56 0.00 0.00 2.62
86 87 1.668151 GACAACCTCCGCGCTTTCT 60.668 57.895 5.56 0.00 0.00 2.52
87 88 1.627550 GACAACCTCCGCGCTTTCTC 61.628 60.000 5.56 0.00 0.00 2.87
88 89 2.432628 AACCTCCGCGCTTTCTCG 60.433 61.111 5.56 0.00 0.00 4.04
89 90 3.934391 AACCTCCGCGCTTTCTCGG 62.934 63.158 5.56 0.00 46.52 4.63
92 93 4.673298 TCCGCGCTTTCTCGGCAA 62.673 61.111 5.56 0.00 44.91 4.52
93 94 3.722295 CCGCGCTTTCTCGGCAAA 61.722 61.111 5.56 0.00 39.14 3.68
94 95 2.202222 CGCGCTTTCTCGGCAAAG 60.202 61.111 5.56 3.40 36.58 2.77
95 96 2.667318 CGCGCTTTCTCGGCAAAGA 61.667 57.895 5.56 0.00 35.67 2.52
96 97 1.133458 GCGCTTTCTCGGCAAAGAG 59.867 57.895 0.00 8.26 35.67 2.85
97 98 1.569479 GCGCTTTCTCGGCAAAGAGT 61.569 55.000 0.00 0.00 39.21 3.24
98 99 0.868406 CGCTTTCTCGGCAAAGAGTT 59.132 50.000 10.22 0.00 39.21 3.01
99 100 1.398960 CGCTTTCTCGGCAAAGAGTTG 60.399 52.381 10.22 0.00 39.21 3.16
100 101 1.068954 GCTTTCTCGGCAAAGAGTTGG 60.069 52.381 10.22 0.00 39.21 3.77
101 102 2.222027 CTTTCTCGGCAAAGAGTTGGT 58.778 47.619 1.87 0.00 39.21 3.67
102 103 2.341846 TTCTCGGCAAAGAGTTGGTT 57.658 45.000 3.58 0.00 39.21 3.67
103 104 2.341846 TCTCGGCAAAGAGTTGGTTT 57.658 45.000 3.58 0.00 39.21 3.27
104 105 2.218603 TCTCGGCAAAGAGTTGGTTTC 58.781 47.619 3.58 0.00 39.21 2.78
105 106 2.158813 TCTCGGCAAAGAGTTGGTTTCT 60.159 45.455 3.58 0.00 39.21 2.52
106 107 2.618709 CTCGGCAAAGAGTTGGTTTCTT 59.381 45.455 0.00 0.00 36.49 2.52
107 108 2.616842 TCGGCAAAGAGTTGGTTTCTTC 59.383 45.455 0.00 0.00 33.92 2.87
108 109 2.618709 CGGCAAAGAGTTGGTTTCTTCT 59.381 45.455 0.00 0.00 33.92 2.85
109 110 3.548818 CGGCAAAGAGTTGGTTTCTTCTG 60.549 47.826 0.00 0.00 33.92 3.02
110 111 3.243535 GGCAAAGAGTTGGTTTCTTCTGG 60.244 47.826 0.00 0.00 33.92 3.86
111 112 3.796844 GCAAAGAGTTGGTTTCTTCTGGC 60.797 47.826 0.00 0.00 33.92 4.85
112 113 3.297134 AAGAGTTGGTTTCTTCTGGCA 57.703 42.857 0.00 0.00 29.05 4.92
113 114 2.856222 AGAGTTGGTTTCTTCTGGCAG 58.144 47.619 8.58 8.58 0.00 4.85
114 115 2.439507 AGAGTTGGTTTCTTCTGGCAGA 59.560 45.455 14.43 14.43 0.00 4.26
115 116 2.550180 GAGTTGGTTTCTTCTGGCAGAC 59.450 50.000 18.55 5.65 0.00 3.51
116 117 2.092429 AGTTGGTTTCTTCTGGCAGACA 60.092 45.455 18.55 7.98 0.00 3.41
117 118 2.687935 GTTGGTTTCTTCTGGCAGACAA 59.312 45.455 18.55 13.88 0.00 3.18
118 119 3.011566 TGGTTTCTTCTGGCAGACAAA 57.988 42.857 18.55 15.83 0.00 2.83
119 120 3.360867 TGGTTTCTTCTGGCAGACAAAA 58.639 40.909 18.55 16.81 0.00 2.44
120 121 3.766591 TGGTTTCTTCTGGCAGACAAAAA 59.233 39.130 18.55 14.36 0.00 1.94
121 122 4.112634 GGTTTCTTCTGGCAGACAAAAAC 58.887 43.478 25.58 25.58 0.00 2.43
122 123 4.112634 GTTTCTTCTGGCAGACAAAAACC 58.887 43.478 24.33 12.75 0.00 3.27
123 124 3.297134 TCTTCTGGCAGACAAAAACCT 57.703 42.857 18.55 0.00 0.00 3.50
124 125 4.431416 TCTTCTGGCAGACAAAAACCTA 57.569 40.909 18.55 0.00 0.00 3.08
125 126 4.787551 TCTTCTGGCAGACAAAAACCTAA 58.212 39.130 18.55 0.00 0.00 2.69
126 127 5.197451 TCTTCTGGCAGACAAAAACCTAAA 58.803 37.500 18.55 0.00 0.00 1.85
127 128 4.911514 TCTGGCAGACAAAAACCTAAAC 57.088 40.909 14.43 0.00 0.00 2.01
128 129 3.634910 TCTGGCAGACAAAAACCTAAACC 59.365 43.478 14.43 0.00 0.00 3.27
129 130 3.636764 CTGGCAGACAAAAACCTAAACCT 59.363 43.478 9.42 0.00 0.00 3.50
130 131 3.634910 TGGCAGACAAAAACCTAAACCTC 59.365 43.478 0.00 0.00 0.00 3.85
131 132 3.889538 GGCAGACAAAAACCTAAACCTCT 59.110 43.478 0.00 0.00 0.00 3.69
132 133 4.341235 GGCAGACAAAAACCTAAACCTCTT 59.659 41.667 0.00 0.00 0.00 2.85
133 134 5.163447 GGCAGACAAAAACCTAAACCTCTTT 60.163 40.000 0.00 0.00 0.00 2.52
134 135 5.977725 GCAGACAAAAACCTAAACCTCTTTC 59.022 40.000 0.00 0.00 0.00 2.62
135 136 6.504398 CAGACAAAAACCTAAACCTCTTTCC 58.496 40.000 0.00 0.00 0.00 3.13
136 137 5.298527 AGACAAAAACCTAAACCTCTTTCCG 59.701 40.000 0.00 0.00 0.00 4.30
137 138 4.202080 ACAAAAACCTAAACCTCTTTCCGC 60.202 41.667 0.00 0.00 0.00 5.54
138 139 2.943036 AACCTAAACCTCTTTCCGCA 57.057 45.000 0.00 0.00 0.00 5.69
139 140 3.434940 AACCTAAACCTCTTTCCGCAT 57.565 42.857 0.00 0.00 0.00 4.73
140 141 2.987232 ACCTAAACCTCTTTCCGCATC 58.013 47.619 0.00 0.00 0.00 3.91
141 142 2.572104 ACCTAAACCTCTTTCCGCATCT 59.428 45.455 0.00 0.00 0.00 2.90
142 143 2.939103 CCTAAACCTCTTTCCGCATCTG 59.061 50.000 0.00 0.00 0.00 2.90
143 144 1.168714 AAACCTCTTTCCGCATCTGC 58.831 50.000 0.00 0.00 37.78 4.26
144 145 0.036732 AACCTCTTTCCGCATCTGCA 59.963 50.000 2.72 0.00 42.21 4.41
145 146 0.254178 ACCTCTTTCCGCATCTGCAT 59.746 50.000 2.72 0.00 42.21 3.96
146 147 1.486310 ACCTCTTTCCGCATCTGCATA 59.514 47.619 2.72 0.00 42.21 3.14
147 148 1.869767 CCTCTTTCCGCATCTGCATAC 59.130 52.381 2.72 0.00 42.21 2.39
148 149 1.869767 CTCTTTCCGCATCTGCATACC 59.130 52.381 2.72 0.00 42.21 2.73
149 150 0.947244 CTTTCCGCATCTGCATACCC 59.053 55.000 2.72 0.00 42.21 3.69
150 151 0.465460 TTTCCGCATCTGCATACCCC 60.465 55.000 2.72 0.00 42.21 4.95
151 152 1.631071 TTCCGCATCTGCATACCCCA 61.631 55.000 2.72 0.00 42.21 4.96
152 153 1.893808 CCGCATCTGCATACCCCAC 60.894 63.158 2.72 0.00 42.21 4.61
153 154 1.893808 CGCATCTGCATACCCCACC 60.894 63.158 2.72 0.00 42.21 4.61
154 155 1.529244 GCATCTGCATACCCCACCC 60.529 63.158 0.00 0.00 41.59 4.61
155 156 1.227943 CATCTGCATACCCCACCCG 60.228 63.158 0.00 0.00 0.00 5.28
156 157 2.452064 ATCTGCATACCCCACCCGG 61.452 63.158 0.00 0.00 0.00 5.73
157 158 4.875713 CTGCATACCCCACCCGGC 62.876 72.222 0.00 0.00 0.00 6.13
177 178 3.533720 CGGAGCCGGATCCTGTAA 58.466 61.111 34.42 0.00 37.20 2.41
178 179 1.067582 CGGAGCCGGATCCTGTAAC 59.932 63.158 34.42 9.25 37.20 2.50
179 180 1.672854 CGGAGCCGGATCCTGTAACA 61.673 60.000 34.42 0.00 37.20 2.41
180 181 0.759346 GGAGCCGGATCCTGTAACAT 59.241 55.000 31.54 0.00 36.35 2.71
181 182 1.270358 GGAGCCGGATCCTGTAACATC 60.270 57.143 31.54 0.73 36.35 3.06
182 183 0.759346 AGCCGGATCCTGTAACATCC 59.241 55.000 5.05 0.00 36.01 3.51
183 184 0.759346 GCCGGATCCTGTAACATCCT 59.241 55.000 5.05 0.00 37.08 3.24
184 185 1.270358 GCCGGATCCTGTAACATCCTC 60.270 57.143 5.05 0.00 37.08 3.71
185 186 2.039418 CCGGATCCTGTAACATCCTCA 58.961 52.381 10.75 0.00 37.08 3.86
186 187 2.434336 CCGGATCCTGTAACATCCTCAA 59.566 50.000 10.75 0.00 37.08 3.02
187 188 3.493350 CCGGATCCTGTAACATCCTCAAG 60.493 52.174 10.75 0.00 37.08 3.02
188 189 3.493350 CGGATCCTGTAACATCCTCAAGG 60.493 52.174 10.75 0.00 37.08 3.61
197 198 3.694746 TCCTCAAGGATGTCGCGT 58.305 55.556 5.77 0.00 39.78 6.01
198 199 2.876581 TCCTCAAGGATGTCGCGTA 58.123 52.632 5.77 0.00 39.78 4.42
199 200 1.179152 TCCTCAAGGATGTCGCGTAA 58.821 50.000 5.77 0.00 39.78 3.18
200 201 1.134367 TCCTCAAGGATGTCGCGTAAG 59.866 52.381 5.77 0.00 39.78 2.34
215 216 3.476295 CGTAAGCTACAGTAACCGTGA 57.524 47.619 0.00 0.00 0.00 4.35
216 217 3.166657 CGTAAGCTACAGTAACCGTGAC 58.833 50.000 0.00 0.00 0.00 3.67
217 218 3.365264 CGTAAGCTACAGTAACCGTGACA 60.365 47.826 0.00 0.00 0.00 3.58
218 219 3.955650 AAGCTACAGTAACCGTGACAT 57.044 42.857 0.00 0.00 0.00 3.06
219 220 3.505464 AGCTACAGTAACCGTGACATC 57.495 47.619 0.00 0.00 0.00 3.06
220 221 2.165845 AGCTACAGTAACCGTGACATCC 59.834 50.000 0.00 0.00 0.00 3.51
221 222 2.737679 GCTACAGTAACCGTGACATCCC 60.738 54.545 0.00 0.00 0.00 3.85
222 223 1.640917 ACAGTAACCGTGACATCCCT 58.359 50.000 0.00 0.00 0.00 4.20
223 224 1.975680 ACAGTAACCGTGACATCCCTT 59.024 47.619 0.00 0.00 0.00 3.95
224 225 2.028385 ACAGTAACCGTGACATCCCTTC 60.028 50.000 0.00 0.00 0.00 3.46
225 226 2.233922 CAGTAACCGTGACATCCCTTCT 59.766 50.000 0.00 0.00 0.00 2.85
226 227 2.904434 AGTAACCGTGACATCCCTTCTT 59.096 45.455 0.00 0.00 0.00 2.52
227 228 2.474410 AACCGTGACATCCCTTCTTC 57.526 50.000 0.00 0.00 0.00 2.87
228 229 1.348064 ACCGTGACATCCCTTCTTCA 58.652 50.000 0.00 0.00 0.00 3.02
229 230 1.002087 ACCGTGACATCCCTTCTTCAC 59.998 52.381 0.00 0.00 35.93 3.18
230 231 1.001974 CCGTGACATCCCTTCTTCACA 59.998 52.381 0.00 0.00 38.64 3.58
231 232 2.355108 CCGTGACATCCCTTCTTCACAT 60.355 50.000 0.00 0.00 38.64 3.21
232 233 2.932614 CGTGACATCCCTTCTTCACATC 59.067 50.000 0.00 0.00 38.64 3.06
233 234 3.274288 GTGACATCCCTTCTTCACATCC 58.726 50.000 0.00 0.00 38.60 3.51
234 235 2.912295 TGACATCCCTTCTTCACATCCA 59.088 45.455 0.00 0.00 0.00 3.41
235 236 3.524789 TGACATCCCTTCTTCACATCCAT 59.475 43.478 0.00 0.00 0.00 3.41
236 237 4.721274 TGACATCCCTTCTTCACATCCATA 59.279 41.667 0.00 0.00 0.00 2.74
237 238 5.370584 TGACATCCCTTCTTCACATCCATAT 59.629 40.000 0.00 0.00 0.00 1.78
238 239 5.628130 ACATCCCTTCTTCACATCCATATG 58.372 41.667 0.00 0.00 39.17 1.78
239 240 4.712051 TCCCTTCTTCACATCCATATGG 57.288 45.455 16.25 16.25 37.43 2.74
240 241 4.047166 TCCCTTCTTCACATCCATATGGT 58.953 43.478 21.28 6.34 37.43 3.55
241 242 4.478317 TCCCTTCTTCACATCCATATGGTT 59.522 41.667 21.28 10.66 37.43 3.67
242 243 5.669904 TCCCTTCTTCACATCCATATGGTTA 59.330 40.000 21.28 3.43 37.43 2.85
243 244 6.159575 TCCCTTCTTCACATCCATATGGTTAA 59.840 38.462 21.28 2.63 37.43 2.01
244 245 6.488006 CCCTTCTTCACATCCATATGGTTAAG 59.512 42.308 21.28 16.37 37.43 1.85
245 246 6.016777 CCTTCTTCACATCCATATGGTTAAGC 60.017 42.308 21.28 0.00 37.43 3.09
246 247 5.376625 TCTTCACATCCATATGGTTAAGCC 58.623 41.667 21.28 0.00 37.43 4.35
247 248 5.132648 TCTTCACATCCATATGGTTAAGCCT 59.867 40.000 21.28 0.00 37.43 4.58
248 249 6.328934 TCTTCACATCCATATGGTTAAGCCTA 59.671 38.462 21.28 0.00 37.43 3.93
249 250 6.508030 TCACATCCATATGGTTAAGCCTAA 57.492 37.500 21.28 0.00 37.43 2.69
250 251 6.905736 TCACATCCATATGGTTAAGCCTAAA 58.094 36.000 21.28 0.00 37.43 1.85
251 252 7.350382 TCACATCCATATGGTTAAGCCTAAAA 58.650 34.615 21.28 0.00 37.43 1.52
252 253 8.004215 TCACATCCATATGGTTAAGCCTAAAAT 58.996 33.333 21.28 0.10 37.43 1.82
253 254 8.084073 CACATCCATATGGTTAAGCCTAAAATG 58.916 37.037 21.28 14.22 37.43 2.32
254 255 8.004215 ACATCCATATGGTTAAGCCTAAAATGA 58.996 33.333 21.28 0.00 37.43 2.57
255 256 9.028284 CATCCATATGGTTAAGCCTAAAATGAT 57.972 33.333 21.28 0.00 38.35 2.45
256 257 9.605951 ATCCATATGGTTAAGCCTAAAATGATT 57.394 29.630 21.28 0.00 38.35 2.57
375 376 7.416154 TTTTATACATGCTACAGTAATCCGC 57.584 36.000 0.00 0.00 0.00 5.54
376 377 2.979814 ACATGCTACAGTAATCCGCA 57.020 45.000 0.00 0.00 34.83 5.69
377 378 2.550978 ACATGCTACAGTAATCCGCAC 58.449 47.619 0.00 0.00 32.94 5.34
378 379 2.093711 ACATGCTACAGTAATCCGCACA 60.094 45.455 0.00 0.00 32.94 4.57
379 380 2.293677 TGCTACAGTAATCCGCACAG 57.706 50.000 0.00 0.00 0.00 3.66
380 381 1.548719 TGCTACAGTAATCCGCACAGT 59.451 47.619 0.00 0.00 0.00 3.55
381 382 2.756207 TGCTACAGTAATCCGCACAGTA 59.244 45.455 0.00 0.00 0.00 2.74
382 383 3.181490 TGCTACAGTAATCCGCACAGTAG 60.181 47.826 0.00 0.00 38.39 2.57
383 384 3.181489 GCTACAGTAATCCGCACAGTAGT 60.181 47.826 0.00 0.00 37.94 2.73
384 385 3.955650 ACAGTAATCCGCACAGTAGTT 57.044 42.857 0.00 0.00 0.00 2.24
385 386 3.585862 ACAGTAATCCGCACAGTAGTTG 58.414 45.455 0.00 0.00 0.00 3.16
386 387 3.006537 ACAGTAATCCGCACAGTAGTTGT 59.993 43.478 0.00 0.00 41.94 3.32
387 388 3.994392 CAGTAATCCGCACAGTAGTTGTT 59.006 43.478 0.00 0.00 38.16 2.83
388 389 4.091509 CAGTAATCCGCACAGTAGTTGTTC 59.908 45.833 0.00 0.00 38.16 3.18
389 390 2.094762 ATCCGCACAGTAGTTGTTCC 57.905 50.000 0.00 0.00 38.16 3.62
390 391 0.753867 TCCGCACAGTAGTTGTTCCA 59.246 50.000 0.00 0.00 38.16 3.53
391 392 1.148310 CCGCACAGTAGTTGTTCCAG 58.852 55.000 0.00 0.00 38.16 3.86
392 393 1.540363 CCGCACAGTAGTTGTTCCAGT 60.540 52.381 0.00 0.00 38.16 4.00
393 394 2.288579 CCGCACAGTAGTTGTTCCAGTA 60.289 50.000 0.00 0.00 38.16 2.74
394 395 3.386486 CGCACAGTAGTTGTTCCAGTAA 58.614 45.455 0.00 0.00 38.16 2.24
395 396 3.183775 CGCACAGTAGTTGTTCCAGTAAC 59.816 47.826 0.00 0.00 38.16 2.50
396 397 3.497262 GCACAGTAGTTGTTCCAGTAACC 59.503 47.826 0.00 0.00 38.16 2.85
397 398 4.699637 CACAGTAGTTGTTCCAGTAACCA 58.300 43.478 0.00 0.00 38.16 3.67
398 399 5.305585 CACAGTAGTTGTTCCAGTAACCAT 58.694 41.667 0.00 0.00 38.16 3.55
399 400 5.179368 CACAGTAGTTGTTCCAGTAACCATG 59.821 44.000 0.00 0.00 38.16 3.66
400 401 5.071250 ACAGTAGTTGTTCCAGTAACCATGA 59.929 40.000 0.00 0.00 36.31 3.07
401 402 5.408604 CAGTAGTTGTTCCAGTAACCATGAC 59.591 44.000 0.00 0.00 37.27 3.06
402 403 3.399330 AGTTGTTCCAGTAACCATGACG 58.601 45.455 0.00 0.00 37.27 4.35
403 404 3.135994 GTTGTTCCAGTAACCATGACGT 58.864 45.455 0.00 0.00 37.27 4.34
404 405 3.478857 TGTTCCAGTAACCATGACGTT 57.521 42.857 0.00 0.00 37.27 3.99
405 406 3.395639 TGTTCCAGTAACCATGACGTTC 58.604 45.455 0.00 0.00 37.27 3.95
406 407 2.740447 GTTCCAGTAACCATGACGTTCC 59.260 50.000 0.00 0.00 31.38 3.62
407 408 2.253610 TCCAGTAACCATGACGTTCCT 58.746 47.619 0.00 0.00 0.00 3.36
408 409 2.635915 TCCAGTAACCATGACGTTCCTT 59.364 45.455 0.00 0.00 0.00 3.36
409 410 3.000727 CCAGTAACCATGACGTTCCTTC 58.999 50.000 0.00 0.00 0.00 3.46
410 411 3.306780 CCAGTAACCATGACGTTCCTTCT 60.307 47.826 0.00 0.00 0.00 2.85
411 412 4.315803 CAGTAACCATGACGTTCCTTCTT 58.684 43.478 0.00 0.00 0.00 2.52
412 413 4.389077 CAGTAACCATGACGTTCCTTCTTC 59.611 45.833 0.00 0.00 0.00 2.87
413 414 2.080286 ACCATGACGTTCCTTCTTCG 57.920 50.000 0.00 0.00 0.00 3.79
414 415 0.721718 CCATGACGTTCCTTCTTCGC 59.278 55.000 0.00 0.00 0.00 4.70
415 416 1.673033 CCATGACGTTCCTTCTTCGCT 60.673 52.381 0.00 0.00 0.00 4.93
416 417 2.069273 CATGACGTTCCTTCTTCGCTT 58.931 47.619 0.00 0.00 0.00 4.68
417 418 2.234300 TGACGTTCCTTCTTCGCTTT 57.766 45.000 0.00 0.00 0.00 3.51
418 419 3.374220 TGACGTTCCTTCTTCGCTTTA 57.626 42.857 0.00 0.00 0.00 1.85
419 420 3.054878 TGACGTTCCTTCTTCGCTTTAC 58.945 45.455 0.00 0.00 0.00 2.01
420 421 3.054878 GACGTTCCTTCTTCGCTTTACA 58.945 45.455 0.00 0.00 0.00 2.41
421 422 2.798847 ACGTTCCTTCTTCGCTTTACAC 59.201 45.455 0.00 0.00 0.00 2.90
422 423 2.798283 CGTTCCTTCTTCGCTTTACACA 59.202 45.455 0.00 0.00 0.00 3.72
423 424 3.432252 CGTTCCTTCTTCGCTTTACACAT 59.568 43.478 0.00 0.00 0.00 3.21
424 425 4.666655 CGTTCCTTCTTCGCTTTACACATG 60.667 45.833 0.00 0.00 0.00 3.21
425 426 2.742053 TCCTTCTTCGCTTTACACATGC 59.258 45.455 0.00 0.00 0.00 4.06
426 427 2.483877 CCTTCTTCGCTTTACACATGCA 59.516 45.455 0.00 0.00 0.00 3.96
427 428 3.127548 CCTTCTTCGCTTTACACATGCAT 59.872 43.478 0.00 0.00 0.00 3.96
428 429 4.379813 CCTTCTTCGCTTTACACATGCATT 60.380 41.667 0.00 0.00 0.00 3.56
429 430 4.764679 TCTTCGCTTTACACATGCATTT 57.235 36.364 0.00 0.00 0.00 2.32
430 431 5.119931 TCTTCGCTTTACACATGCATTTT 57.880 34.783 0.00 0.00 0.00 1.82
431 432 6.247727 TCTTCGCTTTACACATGCATTTTA 57.752 33.333 0.00 0.00 0.00 1.52
432 433 6.083630 TCTTCGCTTTACACATGCATTTTAC 58.916 36.000 0.00 0.00 0.00 2.01
433 434 5.621197 TCGCTTTACACATGCATTTTACT 57.379 34.783 0.00 0.00 0.00 2.24
434 435 5.389778 TCGCTTTACACATGCATTTTACTG 58.610 37.500 0.00 0.00 0.00 2.74
435 436 5.049060 TCGCTTTACACATGCATTTTACTGT 60.049 36.000 0.00 0.00 0.00 3.55
436 437 6.147985 TCGCTTTACACATGCATTTTACTGTA 59.852 34.615 0.00 0.00 0.00 2.74
437 438 6.465781 CGCTTTACACATGCATTTTACTGTAG 59.534 38.462 0.00 0.00 0.00 2.74
438 439 6.251376 GCTTTACACATGCATTTTACTGTAGC 59.749 38.462 0.00 0.00 0.00 3.58
439 440 7.447374 TTTACACATGCATTTTACTGTAGCT 57.553 32.000 0.00 0.00 0.00 3.32
440 441 5.964958 ACACATGCATTTTACTGTAGCTT 57.035 34.783 0.00 0.00 0.00 3.74
441 442 5.942872 ACACATGCATTTTACTGTAGCTTC 58.057 37.500 0.00 0.00 0.00 3.86
442 443 5.023920 CACATGCATTTTACTGTAGCTTCG 58.976 41.667 0.00 0.00 0.00 3.79
443 444 4.695455 ACATGCATTTTACTGTAGCTTCGT 59.305 37.500 0.00 0.00 0.00 3.85
444 445 4.661993 TGCATTTTACTGTAGCTTCGTG 57.338 40.909 0.00 0.00 0.00 4.35
445 446 4.311606 TGCATTTTACTGTAGCTTCGTGA 58.688 39.130 0.00 0.00 0.00 4.35
446 447 4.151689 TGCATTTTACTGTAGCTTCGTGAC 59.848 41.667 0.00 0.00 0.00 3.67
447 448 4.151689 GCATTTTACTGTAGCTTCGTGACA 59.848 41.667 0.00 0.00 0.00 3.58
448 449 5.163854 GCATTTTACTGTAGCTTCGTGACAT 60.164 40.000 0.00 0.00 0.00 3.06
449 450 6.470160 CATTTTACTGTAGCTTCGTGACATC 58.530 40.000 0.00 0.00 0.00 3.06
450 451 5.386958 TTTACTGTAGCTTCGTGACATCT 57.613 39.130 0.00 0.00 0.00 2.90
451 452 3.495670 ACTGTAGCTTCGTGACATCTC 57.504 47.619 0.00 0.00 0.00 2.75
452 453 2.820197 ACTGTAGCTTCGTGACATCTCA 59.180 45.455 0.00 0.00 0.00 3.27
453 454 3.255888 ACTGTAGCTTCGTGACATCTCAA 59.744 43.478 0.00 0.00 0.00 3.02
454 455 3.575630 TGTAGCTTCGTGACATCTCAAC 58.424 45.455 0.00 0.00 0.00 3.18
455 456 2.086054 AGCTTCGTGACATCTCAACC 57.914 50.000 0.00 0.00 0.00 3.77
456 457 1.620819 AGCTTCGTGACATCTCAACCT 59.379 47.619 0.00 0.00 0.00 3.50
457 458 2.037772 AGCTTCGTGACATCTCAACCTT 59.962 45.455 0.00 0.00 0.00 3.50
458 459 2.158449 GCTTCGTGACATCTCAACCTTG 59.842 50.000 0.00 0.00 0.00 3.61
459 460 3.653344 CTTCGTGACATCTCAACCTTGA 58.347 45.455 0.00 0.00 35.57 3.02
471 472 4.826274 TCAACCTTGAGGATGTTAGAGG 57.174 45.455 3.59 0.00 38.87 3.69
472 473 4.425772 TCAACCTTGAGGATGTTAGAGGA 58.574 43.478 3.59 0.00 38.87 3.71
473 474 5.032846 TCAACCTTGAGGATGTTAGAGGAT 58.967 41.667 3.59 0.00 38.87 3.24
474 475 5.129485 TCAACCTTGAGGATGTTAGAGGATC 59.871 44.000 3.59 0.00 38.87 3.36
475 476 3.970640 ACCTTGAGGATGTTAGAGGATCC 59.029 47.826 2.48 2.48 38.83 3.36
476 477 3.969976 CCTTGAGGATGTTAGAGGATCCA 59.030 47.826 15.82 0.00 40.72 3.41
477 478 4.202305 CCTTGAGGATGTTAGAGGATCCAC 60.202 50.000 15.82 8.01 40.72 4.02
478 479 4.271807 TGAGGATGTTAGAGGATCCACT 57.728 45.455 16.41 16.41 40.72 4.00
479 480 4.624913 TGAGGATGTTAGAGGATCCACTT 58.375 43.478 17.39 2.56 40.72 3.16
480 481 4.651503 TGAGGATGTTAGAGGATCCACTTC 59.348 45.833 17.39 11.33 40.72 3.01
481 482 3.970640 AGGATGTTAGAGGATCCACTTCC 59.029 47.826 17.39 18.77 40.59 3.46
482 483 3.071747 GGATGTTAGAGGATCCACTTCCC 59.928 52.174 17.39 7.87 37.25 3.97
483 484 2.478292 TGTTAGAGGATCCACTTCCCC 58.522 52.381 17.39 3.98 36.35 4.81
484 485 1.769465 GTTAGAGGATCCACTTCCCCC 59.231 57.143 17.39 0.00 36.35 5.40
485 486 0.105658 TAGAGGATCCACTTCCCCCG 60.106 60.000 17.39 0.00 36.35 5.73
486 487 2.366972 AGGATCCACTTCCCCCGG 60.367 66.667 15.82 0.00 36.35 5.73
487 488 4.191015 GGATCCACTTCCCCCGGC 62.191 72.222 6.95 0.00 0.00 6.13
488 489 4.191015 GATCCACTTCCCCCGGCC 62.191 72.222 0.00 0.00 0.00 6.13
503 504 3.353836 GCCGCGTGAGGAAAGCAA 61.354 61.111 4.92 0.00 32.02 3.91
504 505 2.556287 CCGCGTGAGGAAAGCAAC 59.444 61.111 4.92 0.00 32.02 4.17
505 506 1.961277 CCGCGTGAGGAAAGCAACT 60.961 57.895 4.92 0.00 32.02 3.16
506 507 0.669318 CCGCGTGAGGAAAGCAACTA 60.669 55.000 4.92 0.00 32.02 2.24
507 508 1.144969 CGCGTGAGGAAAGCAACTAA 58.855 50.000 0.00 0.00 32.02 2.24
508 509 1.529438 CGCGTGAGGAAAGCAACTAAA 59.471 47.619 0.00 0.00 32.02 1.85
509 510 2.661979 CGCGTGAGGAAAGCAACTAAAC 60.662 50.000 0.00 0.00 32.02 2.01
510 511 2.548480 GCGTGAGGAAAGCAACTAAACT 59.452 45.455 0.00 0.00 32.90 2.66
511 512 3.364068 GCGTGAGGAAAGCAACTAAACTC 60.364 47.826 0.00 0.00 32.90 3.01
512 513 3.120991 CGTGAGGAAAGCAACTAAACTCG 60.121 47.826 0.00 0.00 0.00 4.18
513 514 3.186613 GTGAGGAAAGCAACTAAACTCGG 59.813 47.826 0.00 0.00 0.00 4.63
514 515 2.152016 AGGAAAGCAACTAAACTCGGC 58.848 47.619 0.00 0.00 0.00 5.54
515 516 1.136057 GGAAAGCAACTAAACTCGGCG 60.136 52.381 0.00 0.00 0.00 6.46
516 517 0.237498 AAAGCAACTAAACTCGGCGC 59.763 50.000 0.00 0.00 0.00 6.53
517 518 0.602905 AAGCAACTAAACTCGGCGCT 60.603 50.000 7.64 0.00 0.00 5.92
518 519 1.132640 GCAACTAAACTCGGCGCTG 59.867 57.895 10.86 10.86 0.00 5.18
519 520 1.132640 CAACTAAACTCGGCGCTGC 59.867 57.895 12.58 0.00 0.00 5.25
520 521 1.301401 AACTAAACTCGGCGCTGCA 60.301 52.632 12.58 0.00 0.00 4.41
521 522 1.291877 AACTAAACTCGGCGCTGCAG 61.292 55.000 12.58 10.11 0.00 4.41
522 523 3.088500 CTAAACTCGGCGCTGCAGC 62.089 63.158 29.12 29.12 37.78 5.25
523 524 3.589654 TAAACTCGGCGCTGCAGCT 62.590 57.895 34.22 16.84 39.32 4.24
539 540 4.435436 CTGGCTAGCGGCGTCACA 62.435 66.667 9.37 0.00 42.94 3.58
540 541 3.932580 CTGGCTAGCGGCGTCACAA 62.933 63.158 9.37 0.00 42.94 3.33
541 542 3.188786 GGCTAGCGGCGTCACAAG 61.189 66.667 9.37 0.17 42.94 3.16
542 543 2.432628 GCTAGCGGCGTCACAAGT 60.433 61.111 9.37 0.00 0.00 3.16
543 544 2.027625 GCTAGCGGCGTCACAAGTT 61.028 57.895 9.37 0.00 0.00 2.66
544 545 1.956620 GCTAGCGGCGTCACAAGTTC 61.957 60.000 9.37 0.00 0.00 3.01
545 546 1.352156 CTAGCGGCGTCACAAGTTCC 61.352 60.000 9.37 0.00 0.00 3.62
546 547 2.089887 TAGCGGCGTCACAAGTTCCA 62.090 55.000 9.37 0.00 0.00 3.53
547 548 2.954753 GCGGCGTCACAAGTTCCAG 61.955 63.158 9.37 0.00 0.00 3.86
548 549 1.594293 CGGCGTCACAAGTTCCAGT 60.594 57.895 0.00 0.00 0.00 4.00
549 550 1.831389 CGGCGTCACAAGTTCCAGTG 61.831 60.000 0.00 0.00 37.10 3.66
550 551 1.279840 GCGTCACAAGTTCCAGTGC 59.720 57.895 0.00 0.00 35.76 4.40
551 552 1.941812 CGTCACAAGTTCCAGTGCC 59.058 57.895 0.00 0.00 35.76 5.01
552 553 0.532862 CGTCACAAGTTCCAGTGCCT 60.533 55.000 0.00 0.00 35.76 4.75
553 554 1.680338 GTCACAAGTTCCAGTGCCTT 58.320 50.000 0.00 0.00 35.76 4.35
554 555 1.334869 GTCACAAGTTCCAGTGCCTTG 59.665 52.381 11.60 11.60 41.02 3.61
555 556 1.211703 TCACAAGTTCCAGTGCCTTGA 59.788 47.619 17.24 0.00 39.07 3.02
556 557 2.023673 CACAAGTTCCAGTGCCTTGAA 58.976 47.619 17.24 0.13 39.07 2.69
557 558 2.033801 CACAAGTTCCAGTGCCTTGAAG 59.966 50.000 17.24 8.95 39.07 3.02
558 559 1.000938 CAAGTTCCAGTGCCTTGAAGC 60.001 52.381 8.82 0.00 38.23 3.86
559 560 0.886490 AGTTCCAGTGCCTTGAAGCG 60.886 55.000 0.00 0.00 34.65 4.68
560 561 1.148273 TTCCAGTGCCTTGAAGCGT 59.852 52.632 0.00 0.00 34.65 5.07
561 562 0.884704 TTCCAGTGCCTTGAAGCGTC 60.885 55.000 0.00 0.00 34.65 5.19
562 563 2.671177 CCAGTGCCTTGAAGCGTCG 61.671 63.158 0.00 0.00 34.65 5.12
563 564 3.044305 AGTGCCTTGAAGCGTCGC 61.044 61.111 9.80 9.80 34.65 5.19
564 565 4.090057 GTGCCTTGAAGCGTCGCC 62.090 66.667 14.86 0.00 34.65 5.54
565 566 4.314440 TGCCTTGAAGCGTCGCCT 62.314 61.111 14.86 0.00 34.65 5.52
566 567 3.491652 GCCTTGAAGCGTCGCCTC 61.492 66.667 14.86 11.68 0.00 4.70
567 568 2.262915 CCTTGAAGCGTCGCCTCT 59.737 61.111 14.86 0.00 0.00 3.69
568 569 2.097038 CCTTGAAGCGTCGCCTCTG 61.097 63.158 14.86 7.89 0.00 3.35
569 570 2.734673 CTTGAAGCGTCGCCTCTGC 61.735 63.158 14.86 0.00 0.00 4.26
570 571 3.513768 TTGAAGCGTCGCCTCTGCA 62.514 57.895 14.86 0.00 37.32 4.41
571 572 2.738521 GAAGCGTCGCCTCTGCAA 60.739 61.111 14.86 0.00 37.32 4.08
572 573 2.734673 GAAGCGTCGCCTCTGCAAG 61.735 63.158 14.86 0.00 37.32 4.01
585 586 5.138125 CCTCTGCAAGGCTTAAAAATTCA 57.862 39.130 0.00 0.00 38.67 2.57
586 587 5.540911 CCTCTGCAAGGCTTAAAAATTCAA 58.459 37.500 0.00 0.00 38.67 2.69
587 588 5.990996 CCTCTGCAAGGCTTAAAAATTCAAA 59.009 36.000 0.00 0.00 38.67 2.69
588 589 6.482973 CCTCTGCAAGGCTTAAAAATTCAAAA 59.517 34.615 0.00 0.00 38.67 2.44
589 590 7.173735 CCTCTGCAAGGCTTAAAAATTCAAAAT 59.826 33.333 0.00 0.00 38.67 1.82
590 591 8.449251 TCTGCAAGGCTTAAAAATTCAAAATT 57.551 26.923 0.00 0.00 0.00 1.82
591 592 8.558700 TCTGCAAGGCTTAAAAATTCAAAATTC 58.441 29.630 0.00 0.00 0.00 2.17
592 593 8.449251 TGCAAGGCTTAAAAATTCAAAATTCT 57.551 26.923 0.00 0.00 0.00 2.40
593 594 8.344098 TGCAAGGCTTAAAAATTCAAAATTCTG 58.656 29.630 0.00 0.00 0.00 3.02
594 595 8.558700 GCAAGGCTTAAAAATTCAAAATTCTGA 58.441 29.630 0.00 0.00 0.00 3.27
597 598 9.056005 AGGCTTAAAAATTCAAAATTCTGAACC 57.944 29.630 0.00 0.00 38.12 3.62
598 599 8.835439 GGCTTAAAAATTCAAAATTCTGAACCA 58.165 29.630 0.00 0.00 38.12 3.67
599 600 9.868389 GCTTAAAAATTCAAAATTCTGAACCAG 57.132 29.630 0.00 0.00 38.12 4.00
604 605 6.849588 ATTCAAAATTCTGAACCAGTTTGC 57.150 33.333 0.00 0.00 38.12 3.68
605 606 5.596836 TCAAAATTCTGAACCAGTTTGCT 57.403 34.783 0.00 0.00 30.36 3.91
606 607 5.976458 TCAAAATTCTGAACCAGTTTGCTT 58.024 33.333 0.00 0.00 30.36 3.91
607 608 6.042143 TCAAAATTCTGAACCAGTTTGCTTC 58.958 36.000 0.00 0.00 30.36 3.86
608 609 4.590850 AATTCTGAACCAGTTTGCTTCC 57.409 40.909 0.00 0.00 32.61 3.46
609 610 2.727123 TCTGAACCAGTTTGCTTCCA 57.273 45.000 0.00 0.00 32.61 3.53
610 611 2.575532 TCTGAACCAGTTTGCTTCCAG 58.424 47.619 0.00 0.00 32.61 3.86
611 612 1.610522 CTGAACCAGTTTGCTTCCAGG 59.389 52.381 0.00 0.00 0.00 4.45
612 613 0.315251 GAACCAGTTTGCTTCCAGGC 59.685 55.000 0.00 0.00 0.00 4.85
613 614 0.106015 AACCAGTTTGCTTCCAGGCT 60.106 50.000 0.00 0.00 0.00 4.58
614 615 0.538287 ACCAGTTTGCTTCCAGGCTC 60.538 55.000 0.00 0.00 0.00 4.70
615 616 1.246737 CCAGTTTGCTTCCAGGCTCC 61.247 60.000 0.00 0.00 0.00 4.70
616 617 1.075659 AGTTTGCTTCCAGGCTCCC 59.924 57.895 0.00 0.00 0.00 4.30
617 618 1.228552 GTTTGCTTCCAGGCTCCCA 60.229 57.895 0.00 0.00 0.00 4.37
618 619 1.075482 TTTGCTTCCAGGCTCCCAG 59.925 57.895 0.00 0.00 0.00 4.45
619 620 3.574074 TTGCTTCCAGGCTCCCAGC 62.574 63.158 2.09 2.09 41.46 4.85
632 633 2.985282 CCAGCGCTGGCAAAGGAA 60.985 61.111 41.27 0.00 44.73 3.36
633 634 2.563798 CCAGCGCTGGCAAAGGAAA 61.564 57.895 41.27 0.00 44.73 3.13
634 635 1.363443 CAGCGCTGGCAAAGGAAAA 59.637 52.632 29.88 0.00 43.41 2.29
635 636 0.249405 CAGCGCTGGCAAAGGAAAAA 60.249 50.000 29.88 0.00 43.41 1.94
636 637 0.032540 AGCGCTGGCAAAGGAAAAAG 59.967 50.000 10.39 0.00 43.41 2.27
637 638 0.249447 GCGCTGGCAAAGGAAAAAGT 60.249 50.000 0.00 0.00 39.62 2.66
638 639 1.806247 GCGCTGGCAAAGGAAAAAGTT 60.806 47.619 0.00 0.00 39.62 2.66
639 640 2.549926 CGCTGGCAAAGGAAAAAGTTT 58.450 42.857 0.00 0.00 0.00 2.66
640 641 3.712187 CGCTGGCAAAGGAAAAAGTTTA 58.288 40.909 0.00 0.00 0.00 2.01
659 660 7.254227 AGTTTACGAGTAAATTGCACAGAAA 57.746 32.000 11.04 0.00 37.37 2.52
665 666 6.374333 ACGAGTAAATTGCACAGAAATACCAT 59.626 34.615 0.00 0.00 0.00 3.55
1193 1204 8.961294 ATTTTGTTTGATTTGATTTGTCCTCA 57.039 26.923 0.00 0.00 0.00 3.86
2213 2266 3.565482 GCATCAACTTGTGGACTTTCAGA 59.435 43.478 0.00 0.00 0.00 3.27
2610 2663 5.690464 AAGATTACTGAGCTCATCAAGGT 57.310 39.130 18.63 13.63 37.52 3.50
3245 7409 2.508300 GCCACCCTAGACCCTAAATGAA 59.492 50.000 0.00 0.00 0.00 2.57
3246 7410 3.684697 GCCACCCTAGACCCTAAATGAAC 60.685 52.174 0.00 0.00 0.00 3.18
3417 8082 1.414550 GGGCAGAGAATGTACCTCTCC 59.585 57.143 15.15 10.77 40.25 3.71
3418 8083 1.414550 GGCAGAGAATGTACCTCTCCC 59.585 57.143 15.15 5.43 40.25 4.30
3419 8084 2.393646 GCAGAGAATGTACCTCTCCCT 58.606 52.381 15.15 0.15 40.25 4.20
3420 8085 2.364002 GCAGAGAATGTACCTCTCCCTC 59.636 54.545 15.15 3.58 40.25 4.30
3421 8086 3.909732 CAGAGAATGTACCTCTCCCTCT 58.090 50.000 15.15 5.40 40.25 3.69
3422 8087 3.888930 CAGAGAATGTACCTCTCCCTCTC 59.111 52.174 15.15 4.26 40.25 3.20
3423 8088 3.117284 AGAGAATGTACCTCTCCCTCTCC 60.117 52.174 15.15 0.00 40.25 3.71
3424 8089 2.090999 AGAATGTACCTCTCCCTCTCCC 60.091 54.545 0.00 0.00 0.00 4.30
3425 8090 1.319947 ATGTACCTCTCCCTCTCCCA 58.680 55.000 0.00 0.00 0.00 4.37
3426 8091 0.631753 TGTACCTCTCCCTCTCCCAG 59.368 60.000 0.00 0.00 0.00 4.45
3427 8092 0.757561 GTACCTCTCCCTCTCCCAGC 60.758 65.000 0.00 0.00 0.00 4.85
3428 8093 1.221909 TACCTCTCCCTCTCCCAGCA 61.222 60.000 0.00 0.00 0.00 4.41
3484 8185 3.247648 AGTCCCAGCAGCTGCAGT 61.248 61.111 38.24 19.11 45.16 4.40
3497 8198 2.749441 GCAGTTGCAGCCCCTCTC 60.749 66.667 0.00 0.00 41.59 3.20
3498 8199 2.045536 CAGTTGCAGCCCCTCTCC 60.046 66.667 0.00 0.00 0.00 3.71
3499 8200 3.334054 AGTTGCAGCCCCTCTCCC 61.334 66.667 0.00 0.00 0.00 4.30
3500 8201 3.650950 GTTGCAGCCCCTCTCCCA 61.651 66.667 0.00 0.00 0.00 4.37
3501 8202 3.333219 TTGCAGCCCCTCTCCCAG 61.333 66.667 0.00 0.00 0.00 4.45
3504 8205 3.478274 CAGCCCCTCTCCCAGCTC 61.478 72.222 0.00 0.00 31.93 4.09
3505 8206 4.814041 AGCCCCTCTCCCAGCTCC 62.814 72.222 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 8.439286 CGGTTGAATTTCTCTTTTGTTTTCAAA 58.561 29.630 0.00 0.00 46.39 2.69
12 13 7.600752 ACGGTTGAATTTCTCTTTTGTTTTCAA 59.399 29.630 0.00 0.00 38.10 2.69
13 14 7.062839 CACGGTTGAATTTCTCTTTTGTTTTCA 59.937 33.333 0.00 0.00 0.00 2.69
14 15 7.391016 CACGGTTGAATTTCTCTTTTGTTTTC 58.609 34.615 0.00 0.00 0.00 2.29
15 16 6.312672 CCACGGTTGAATTTCTCTTTTGTTTT 59.687 34.615 0.00 0.00 0.00 2.43
16 17 5.810074 CCACGGTTGAATTTCTCTTTTGTTT 59.190 36.000 0.00 0.00 0.00 2.83
17 18 5.126384 TCCACGGTTGAATTTCTCTTTTGTT 59.874 36.000 0.00 0.00 0.00 2.83
18 19 4.642885 TCCACGGTTGAATTTCTCTTTTGT 59.357 37.500 0.00 0.00 0.00 2.83
19 20 5.181690 TCCACGGTTGAATTTCTCTTTTG 57.818 39.130 0.00 0.00 0.00 2.44
20 21 6.040391 TCAATCCACGGTTGAATTTCTCTTTT 59.960 34.615 0.00 0.00 32.98 2.27
21 22 5.534654 TCAATCCACGGTTGAATTTCTCTTT 59.465 36.000 0.00 0.00 32.98 2.52
22 23 5.048713 GTCAATCCACGGTTGAATTTCTCTT 60.049 40.000 0.00 0.00 37.34 2.85
23 24 4.455877 GTCAATCCACGGTTGAATTTCTCT 59.544 41.667 0.00 0.00 37.34 3.10
24 25 4.379499 GGTCAATCCACGGTTGAATTTCTC 60.379 45.833 0.00 0.00 37.34 2.87
25 26 3.506067 GGTCAATCCACGGTTGAATTTCT 59.494 43.478 0.00 0.00 37.34 2.52
26 27 3.669557 CGGTCAATCCACGGTTGAATTTC 60.670 47.826 3.63 0.00 37.34 2.17
27 28 2.227865 CGGTCAATCCACGGTTGAATTT 59.772 45.455 3.63 0.00 37.34 1.82
28 29 1.810151 CGGTCAATCCACGGTTGAATT 59.190 47.619 3.63 0.00 37.34 2.17
29 30 1.448985 CGGTCAATCCACGGTTGAAT 58.551 50.000 3.63 0.00 37.34 2.57
30 31 0.604243 CCGGTCAATCCACGGTTGAA 60.604 55.000 0.00 0.00 42.53 2.69
31 32 1.004320 CCGGTCAATCCACGGTTGA 60.004 57.895 0.00 0.00 42.53 3.18
32 33 3.573558 CCGGTCAATCCACGGTTG 58.426 61.111 0.00 0.00 42.53 3.77
36 37 3.106242 TGATATTCCGGTCAATCCACG 57.894 47.619 0.00 0.00 35.57 4.94
37 38 4.273480 CACTTGATATTCCGGTCAATCCAC 59.727 45.833 0.00 0.00 34.18 4.02
38 39 4.080582 ACACTTGATATTCCGGTCAATCCA 60.081 41.667 0.00 0.00 34.18 3.41
39 40 4.273480 CACACTTGATATTCCGGTCAATCC 59.727 45.833 0.00 0.00 34.18 3.01
40 41 4.260784 GCACACTTGATATTCCGGTCAATC 60.261 45.833 0.00 3.52 34.18 2.67
41 42 3.627577 GCACACTTGATATTCCGGTCAAT 59.372 43.478 0.00 0.00 34.18 2.57
42 43 3.006940 GCACACTTGATATTCCGGTCAA 58.993 45.455 0.00 2.85 33.63 3.18
43 44 2.027653 TGCACACTTGATATTCCGGTCA 60.028 45.455 0.00 0.00 0.00 4.02
44 45 2.627945 TGCACACTTGATATTCCGGTC 58.372 47.619 0.00 0.00 0.00 4.79
45 46 2.779755 TGCACACTTGATATTCCGGT 57.220 45.000 0.00 0.00 0.00 5.28
46 47 2.223340 GCTTGCACACTTGATATTCCGG 60.223 50.000 0.00 0.00 0.00 5.14
47 48 2.537529 CGCTTGCACACTTGATATTCCG 60.538 50.000 0.00 0.00 0.00 4.30
48 49 2.677836 TCGCTTGCACACTTGATATTCC 59.322 45.455 0.00 0.00 0.00 3.01
49 50 3.125146 TGTCGCTTGCACACTTGATATTC 59.875 43.478 0.00 0.00 0.00 1.75
50 51 3.073678 TGTCGCTTGCACACTTGATATT 58.926 40.909 0.00 0.00 0.00 1.28
51 52 2.698803 TGTCGCTTGCACACTTGATAT 58.301 42.857 0.00 0.00 0.00 1.63
52 53 2.162319 TGTCGCTTGCACACTTGATA 57.838 45.000 0.00 0.00 0.00 2.15
53 54 1.002468 GTTGTCGCTTGCACACTTGAT 60.002 47.619 0.00 0.00 0.00 2.57
54 55 0.376852 GTTGTCGCTTGCACACTTGA 59.623 50.000 0.00 0.00 0.00 3.02
55 56 0.592247 GGTTGTCGCTTGCACACTTG 60.592 55.000 0.00 0.00 0.00 3.16
56 57 0.748005 AGGTTGTCGCTTGCACACTT 60.748 50.000 0.00 0.00 0.00 3.16
57 58 1.153168 AGGTTGTCGCTTGCACACT 60.153 52.632 0.00 0.00 0.00 3.55
58 59 1.279840 GAGGTTGTCGCTTGCACAC 59.720 57.895 0.00 0.00 0.00 3.82
59 60 1.891919 GGAGGTTGTCGCTTGCACA 60.892 57.895 0.00 0.00 0.00 4.57
60 61 2.946762 GGAGGTTGTCGCTTGCAC 59.053 61.111 0.00 0.00 0.00 4.57
61 62 2.664851 CGGAGGTTGTCGCTTGCA 60.665 61.111 0.00 0.00 0.00 4.08
67 68 3.011760 GAAAGCGCGGAGGTTGTCG 62.012 63.158 8.83 0.00 40.91 4.35
68 69 1.627550 GAGAAAGCGCGGAGGTTGTC 61.628 60.000 8.83 0.00 40.91 3.18
69 70 1.668151 GAGAAAGCGCGGAGGTTGT 60.668 57.895 8.83 0.00 40.91 3.32
70 71 2.730672 CGAGAAAGCGCGGAGGTTG 61.731 63.158 8.83 0.00 40.91 3.77
71 72 2.432628 CGAGAAAGCGCGGAGGTT 60.433 61.111 8.83 0.00 43.26 3.50
77 78 2.202222 CTTTGCCGAGAAAGCGCG 60.202 61.111 0.00 0.00 37.06 6.86
78 79 1.133458 CTCTTTGCCGAGAAAGCGC 59.867 57.895 0.00 0.00 33.63 5.92
79 80 0.868406 AACTCTTTGCCGAGAAAGCG 59.132 50.000 2.28 0.00 33.63 4.68
80 81 1.068954 CCAACTCTTTGCCGAGAAAGC 60.069 52.381 2.28 0.00 33.63 3.51
81 82 2.222027 ACCAACTCTTTGCCGAGAAAG 58.778 47.619 2.28 0.00 35.06 2.62
82 83 2.341846 ACCAACTCTTTGCCGAGAAA 57.658 45.000 2.28 0.00 35.06 2.52
83 84 2.341846 AACCAACTCTTTGCCGAGAA 57.658 45.000 2.28 0.00 35.06 2.87
84 85 2.158813 AGAAACCAACTCTTTGCCGAGA 60.159 45.455 2.28 0.00 35.06 4.04
85 86 2.222027 AGAAACCAACTCTTTGCCGAG 58.778 47.619 0.00 0.00 37.07 4.63
86 87 2.341846 AGAAACCAACTCTTTGCCGA 57.658 45.000 0.00 0.00 0.00 5.54
87 88 2.618709 AGAAGAAACCAACTCTTTGCCG 59.381 45.455 0.00 0.00 33.24 5.69
88 89 3.243535 CCAGAAGAAACCAACTCTTTGCC 60.244 47.826 0.00 0.00 33.24 4.52
89 90 3.796844 GCCAGAAGAAACCAACTCTTTGC 60.797 47.826 0.00 0.00 33.24 3.68
90 91 3.381272 TGCCAGAAGAAACCAACTCTTTG 59.619 43.478 0.00 0.00 33.24 2.77
91 92 3.631250 TGCCAGAAGAAACCAACTCTTT 58.369 40.909 0.00 0.00 33.24 2.52
92 93 3.117888 TCTGCCAGAAGAAACCAACTCTT 60.118 43.478 0.00 0.00 35.82 2.85
93 94 2.439507 TCTGCCAGAAGAAACCAACTCT 59.560 45.455 0.00 0.00 0.00 3.24
94 95 2.550180 GTCTGCCAGAAGAAACCAACTC 59.450 50.000 0.00 0.00 0.00 3.01
95 96 2.092429 TGTCTGCCAGAAGAAACCAACT 60.092 45.455 0.00 0.00 0.00 3.16
96 97 2.297701 TGTCTGCCAGAAGAAACCAAC 58.702 47.619 0.00 0.00 0.00 3.77
97 98 2.727123 TGTCTGCCAGAAGAAACCAA 57.273 45.000 0.00 0.00 0.00 3.67
98 99 2.727123 TTGTCTGCCAGAAGAAACCA 57.273 45.000 0.00 0.00 0.00 3.67
99 100 4.112634 GTTTTTGTCTGCCAGAAGAAACC 58.887 43.478 13.60 1.95 0.00 3.27
100 101 4.112634 GGTTTTTGTCTGCCAGAAGAAAC 58.887 43.478 15.17 15.17 0.00 2.78
101 102 4.023291 AGGTTTTTGTCTGCCAGAAGAAA 58.977 39.130 0.00 0.00 0.00 2.52
102 103 3.631250 AGGTTTTTGTCTGCCAGAAGAA 58.369 40.909 0.00 0.00 0.00 2.52
103 104 3.297134 AGGTTTTTGTCTGCCAGAAGA 57.703 42.857 0.00 0.00 0.00 2.87
104 105 5.281727 GTTTAGGTTTTTGTCTGCCAGAAG 58.718 41.667 0.00 0.00 0.00 2.85
105 106 4.098807 GGTTTAGGTTTTTGTCTGCCAGAA 59.901 41.667 0.00 0.00 0.00 3.02
106 107 3.634910 GGTTTAGGTTTTTGTCTGCCAGA 59.365 43.478 0.00 0.00 0.00 3.86
107 108 3.636764 AGGTTTAGGTTTTTGTCTGCCAG 59.363 43.478 0.00 0.00 0.00 4.85
108 109 3.634910 GAGGTTTAGGTTTTTGTCTGCCA 59.365 43.478 0.00 0.00 0.00 4.92
109 110 3.889538 AGAGGTTTAGGTTTTTGTCTGCC 59.110 43.478 0.00 0.00 0.00 4.85
110 111 5.515797 AAGAGGTTTAGGTTTTTGTCTGC 57.484 39.130 0.00 0.00 0.00 4.26
111 112 6.504398 GGAAAGAGGTTTAGGTTTTTGTCTG 58.496 40.000 0.00 0.00 0.00 3.51
112 113 5.298527 CGGAAAGAGGTTTAGGTTTTTGTCT 59.701 40.000 0.00 0.00 0.00 3.41
113 114 5.516996 CGGAAAGAGGTTTAGGTTTTTGTC 58.483 41.667 0.00 0.00 0.00 3.18
114 115 4.202080 GCGGAAAGAGGTTTAGGTTTTTGT 60.202 41.667 0.00 0.00 0.00 2.83
115 116 4.202070 TGCGGAAAGAGGTTTAGGTTTTTG 60.202 41.667 0.00 0.00 0.00 2.44
116 117 3.955551 TGCGGAAAGAGGTTTAGGTTTTT 59.044 39.130 0.00 0.00 0.00 1.94
117 118 3.558033 TGCGGAAAGAGGTTTAGGTTTT 58.442 40.909 0.00 0.00 0.00 2.43
118 119 3.217681 TGCGGAAAGAGGTTTAGGTTT 57.782 42.857 0.00 0.00 0.00 3.27
119 120 2.943036 TGCGGAAAGAGGTTTAGGTT 57.057 45.000 0.00 0.00 0.00 3.50
120 121 2.572104 AGATGCGGAAAGAGGTTTAGGT 59.428 45.455 0.00 0.00 0.00 3.08
121 122 2.939103 CAGATGCGGAAAGAGGTTTAGG 59.061 50.000 0.00 0.00 0.00 2.69
122 123 2.352960 GCAGATGCGGAAAGAGGTTTAG 59.647 50.000 0.00 0.00 0.00 1.85
123 124 2.290008 TGCAGATGCGGAAAGAGGTTTA 60.290 45.455 0.00 0.00 45.83 2.01
124 125 1.168714 GCAGATGCGGAAAGAGGTTT 58.831 50.000 0.00 0.00 0.00 3.27
125 126 0.036732 TGCAGATGCGGAAAGAGGTT 59.963 50.000 0.00 0.00 45.83 3.50
126 127 0.254178 ATGCAGATGCGGAAAGAGGT 59.746 50.000 0.00 0.00 45.83 3.85
127 128 1.869767 GTATGCAGATGCGGAAAGAGG 59.130 52.381 0.00 0.00 45.83 3.69
128 129 1.869767 GGTATGCAGATGCGGAAAGAG 59.130 52.381 0.00 0.00 45.83 2.85
129 130 1.475034 GGGTATGCAGATGCGGAAAGA 60.475 52.381 0.00 0.00 45.83 2.52
130 131 0.947244 GGGTATGCAGATGCGGAAAG 59.053 55.000 0.00 0.00 45.83 2.62
131 132 0.465460 GGGGTATGCAGATGCGGAAA 60.465 55.000 0.00 0.00 45.83 3.13
132 133 1.148273 GGGGTATGCAGATGCGGAA 59.852 57.895 0.00 0.00 45.83 4.30
133 134 2.069430 TGGGGTATGCAGATGCGGA 61.069 57.895 0.00 0.00 45.83 5.54
134 135 1.893808 GTGGGGTATGCAGATGCGG 60.894 63.158 0.00 0.00 45.83 5.69
135 136 1.893808 GGTGGGGTATGCAGATGCG 60.894 63.158 0.00 0.00 45.83 4.73
136 137 1.529244 GGGTGGGGTATGCAGATGC 60.529 63.158 0.00 0.00 42.50 3.91
137 138 1.227943 CGGGTGGGGTATGCAGATG 60.228 63.158 0.00 0.00 0.00 2.90
138 139 2.452064 CCGGGTGGGGTATGCAGAT 61.452 63.158 0.00 0.00 0.00 2.90
139 140 3.087253 CCGGGTGGGGTATGCAGA 61.087 66.667 0.00 0.00 0.00 4.26
140 141 4.875713 GCCGGGTGGGGTATGCAG 62.876 72.222 2.18 0.00 35.78 4.41
159 160 2.792947 TTACAGGATCCGGCTCCGC 61.793 63.158 18.42 0.00 40.46 5.54
160 161 1.067582 GTTACAGGATCCGGCTCCG 59.932 63.158 18.42 15.12 40.46 4.63
161 162 0.759346 ATGTTACAGGATCCGGCTCC 59.241 55.000 16.90 16.90 35.37 4.70
162 163 1.270358 GGATGTTACAGGATCCGGCTC 60.270 57.143 12.27 0.00 0.00 4.70
163 164 0.759346 GGATGTTACAGGATCCGGCT 59.241 55.000 12.27 2.24 0.00 5.52
164 165 0.759346 AGGATGTTACAGGATCCGGC 59.241 55.000 12.27 0.00 42.73 6.13
165 166 2.039418 TGAGGATGTTACAGGATCCGG 58.961 52.381 10.69 10.69 42.73 5.14
166 167 3.493350 CCTTGAGGATGTTACAGGATCCG 60.493 52.174 5.98 3.99 42.73 4.18
167 168 3.711704 TCCTTGAGGATGTTACAGGATCC 59.288 47.826 2.48 2.48 39.78 3.36
181 182 1.560923 CTTACGCGACATCCTTGAGG 58.439 55.000 15.93 0.00 0.00 3.86
182 183 0.924090 GCTTACGCGACATCCTTGAG 59.076 55.000 15.93 0.00 0.00 3.02
183 184 0.530744 AGCTTACGCGACATCCTTGA 59.469 50.000 15.93 0.00 42.32 3.02
184 185 1.852895 GTAGCTTACGCGACATCCTTG 59.147 52.381 15.93 0.00 40.86 3.61
185 186 1.475280 TGTAGCTTACGCGACATCCTT 59.525 47.619 15.93 0.00 44.99 3.36
186 187 1.100510 TGTAGCTTACGCGACATCCT 58.899 50.000 15.93 4.64 44.99 3.24
187 188 3.635433 TGTAGCTTACGCGACATCC 57.365 52.632 15.93 0.00 44.99 3.51
191 192 2.180397 GGTTACTGTAGCTTACGCGAC 58.820 52.381 15.93 0.00 41.45 5.19
192 193 1.202065 CGGTTACTGTAGCTTACGCGA 60.202 52.381 15.93 0.00 42.32 5.87
193 194 1.186030 CGGTTACTGTAGCTTACGCG 58.814 55.000 3.53 3.53 42.32 6.01
194 195 1.916000 CACGGTTACTGTAGCTTACGC 59.084 52.381 0.00 0.00 0.00 4.42
195 196 3.166657 GTCACGGTTACTGTAGCTTACG 58.833 50.000 0.00 0.34 0.00 3.18
196 197 4.164822 TGTCACGGTTACTGTAGCTTAC 57.835 45.455 0.00 0.00 0.00 2.34
197 198 4.142315 GGATGTCACGGTTACTGTAGCTTA 60.142 45.833 0.00 0.00 0.00 3.09
198 199 3.368116 GGATGTCACGGTTACTGTAGCTT 60.368 47.826 0.00 0.00 0.00 3.74
199 200 2.165845 GGATGTCACGGTTACTGTAGCT 59.834 50.000 0.00 0.00 0.00 3.32
200 201 2.537401 GGATGTCACGGTTACTGTAGC 58.463 52.381 0.00 0.00 0.00 3.58
201 202 2.758979 AGGGATGTCACGGTTACTGTAG 59.241 50.000 0.00 0.00 0.00 2.74
202 203 2.811410 AGGGATGTCACGGTTACTGTA 58.189 47.619 0.00 0.00 0.00 2.74
203 204 1.640917 AGGGATGTCACGGTTACTGT 58.359 50.000 0.00 0.00 0.00 3.55
204 205 2.233922 AGAAGGGATGTCACGGTTACTG 59.766 50.000 0.00 0.00 0.00 2.74
205 206 2.537143 AGAAGGGATGTCACGGTTACT 58.463 47.619 0.00 0.00 0.00 2.24
206 207 3.259902 GAAGAAGGGATGTCACGGTTAC 58.740 50.000 0.00 0.00 0.00 2.50
207 208 2.901192 TGAAGAAGGGATGTCACGGTTA 59.099 45.455 0.00 0.00 0.00 2.85
208 209 1.697432 TGAAGAAGGGATGTCACGGTT 59.303 47.619 0.00 0.00 0.00 4.44
209 210 1.002087 GTGAAGAAGGGATGTCACGGT 59.998 52.381 0.00 0.00 31.84 4.83
210 211 1.001974 TGTGAAGAAGGGATGTCACGG 59.998 52.381 0.00 0.00 42.66 4.94
211 212 2.455674 TGTGAAGAAGGGATGTCACG 57.544 50.000 0.00 0.00 42.66 4.35
212 213 3.274288 GGATGTGAAGAAGGGATGTCAC 58.726 50.000 0.00 0.00 40.64 3.67
213 214 2.912295 TGGATGTGAAGAAGGGATGTCA 59.088 45.455 0.00 0.00 0.00 3.58
214 215 3.634397 TGGATGTGAAGAAGGGATGTC 57.366 47.619 0.00 0.00 0.00 3.06
215 216 5.457197 CCATATGGATGTGAAGAAGGGATGT 60.457 44.000 17.49 0.00 37.39 3.06
216 217 5.008331 CCATATGGATGTGAAGAAGGGATG 58.992 45.833 17.49 0.00 37.39 3.51
217 218 4.666907 ACCATATGGATGTGAAGAAGGGAT 59.333 41.667 28.77 0.00 38.94 3.85
218 219 4.047166 ACCATATGGATGTGAAGAAGGGA 58.953 43.478 28.77 0.00 38.94 4.20
219 220 4.443978 ACCATATGGATGTGAAGAAGGG 57.556 45.455 28.77 0.00 38.94 3.95
220 221 6.016777 GCTTAACCATATGGATGTGAAGAAGG 60.017 42.308 28.77 1.28 38.94 3.46
221 222 6.016777 GGCTTAACCATATGGATGTGAAGAAG 60.017 42.308 28.77 15.51 38.86 2.85
222 223 5.827797 GGCTTAACCATATGGATGTGAAGAA 59.172 40.000 28.77 5.67 38.86 2.52
223 224 5.132648 AGGCTTAACCATATGGATGTGAAGA 59.867 40.000 28.77 0.00 43.14 2.87
224 225 5.380043 AGGCTTAACCATATGGATGTGAAG 58.620 41.667 28.77 20.31 43.14 3.02
225 226 5.387113 AGGCTTAACCATATGGATGTGAA 57.613 39.130 28.77 12.28 43.14 3.18
226 227 6.508030 TTAGGCTTAACCATATGGATGTGA 57.492 37.500 28.77 8.66 43.14 3.58
227 228 7.581213 TTTTAGGCTTAACCATATGGATGTG 57.419 36.000 28.77 13.95 43.14 3.21
228 229 8.004215 TCATTTTAGGCTTAACCATATGGATGT 58.996 33.333 28.77 14.56 43.14 3.06
229 230 8.408043 TCATTTTAGGCTTAACCATATGGATG 57.592 34.615 28.77 15.45 43.14 3.51
230 231 9.605951 AATCATTTTAGGCTTAACCATATGGAT 57.394 29.630 28.77 19.22 43.14 3.41
349 350 8.504005 GCGGATTACTGTAGCATGTATAAAAAT 58.496 33.333 0.00 0.00 0.00 1.82
350 351 7.496263 TGCGGATTACTGTAGCATGTATAAAAA 59.504 33.333 0.00 0.00 32.43 1.94
351 352 6.987404 TGCGGATTACTGTAGCATGTATAAAA 59.013 34.615 0.00 0.00 32.43 1.52
352 353 6.422701 GTGCGGATTACTGTAGCATGTATAAA 59.577 38.462 3.29 0.00 40.11 1.40
353 354 5.924254 GTGCGGATTACTGTAGCATGTATAA 59.076 40.000 3.29 0.00 40.11 0.98
354 355 5.010213 TGTGCGGATTACTGTAGCATGTATA 59.990 40.000 3.29 0.00 40.11 1.47
355 356 4.202212 TGTGCGGATTACTGTAGCATGTAT 60.202 41.667 3.29 0.00 40.11 2.29
356 357 3.131400 TGTGCGGATTACTGTAGCATGTA 59.869 43.478 3.29 0.00 40.11 2.29
357 358 2.093711 TGTGCGGATTACTGTAGCATGT 60.094 45.455 3.29 0.00 40.11 3.21
358 359 2.541346 CTGTGCGGATTACTGTAGCATG 59.459 50.000 3.29 0.00 40.11 4.06
359 360 2.168521 ACTGTGCGGATTACTGTAGCAT 59.831 45.455 3.29 0.00 40.11 3.79
360 361 1.548719 ACTGTGCGGATTACTGTAGCA 59.451 47.619 0.00 0.00 35.27 3.49
361 362 2.295253 ACTGTGCGGATTACTGTAGC 57.705 50.000 0.00 0.00 0.00 3.58
362 363 4.634184 ACTACTGTGCGGATTACTGTAG 57.366 45.455 15.83 15.83 46.84 2.74
363 364 4.219070 ACAACTACTGTGCGGATTACTGTA 59.781 41.667 0.00 0.00 36.69 2.74
364 365 3.006537 ACAACTACTGTGCGGATTACTGT 59.993 43.478 0.00 0.00 36.69 3.55
365 366 3.585862 ACAACTACTGTGCGGATTACTG 58.414 45.455 0.00 0.00 36.69 2.74
366 367 3.955650 ACAACTACTGTGCGGATTACT 57.044 42.857 0.00 0.00 36.69 2.24
367 368 3.370061 GGAACAACTACTGTGCGGATTAC 59.630 47.826 0.00 0.00 38.67 1.89
368 369 3.007074 TGGAACAACTACTGTGCGGATTA 59.993 43.478 0.00 0.00 38.67 1.75
369 370 2.224426 TGGAACAACTACTGTGCGGATT 60.224 45.455 0.00 0.00 38.67 3.01
370 371 1.346395 TGGAACAACTACTGTGCGGAT 59.654 47.619 0.00 0.00 38.67 4.18
371 372 0.753867 TGGAACAACTACTGTGCGGA 59.246 50.000 0.00 0.00 38.67 5.54
372 373 1.148310 CTGGAACAACTACTGTGCGG 58.852 55.000 0.00 0.00 38.67 5.69
373 374 1.865865 ACTGGAACAACTACTGTGCG 58.134 50.000 0.00 0.00 38.67 5.34
374 375 3.497262 GGTTACTGGAACAACTACTGTGC 59.503 47.826 4.94 0.00 40.09 4.57
375 376 4.699637 TGGTTACTGGAACAACTACTGTG 58.300 43.478 4.94 0.00 40.09 3.66
376 377 5.071250 TCATGGTTACTGGAACAACTACTGT 59.929 40.000 4.94 0.00 40.09 3.55
377 378 5.408604 GTCATGGTTACTGGAACAACTACTG 59.591 44.000 4.94 0.00 40.09 2.74
378 379 5.548406 GTCATGGTTACTGGAACAACTACT 58.452 41.667 4.94 0.00 40.09 2.57
379 380 4.387862 CGTCATGGTTACTGGAACAACTAC 59.612 45.833 4.94 0.00 40.09 2.73
380 381 4.039488 ACGTCATGGTTACTGGAACAACTA 59.961 41.667 4.94 0.00 40.09 2.24
381 382 3.181458 ACGTCATGGTTACTGGAACAACT 60.181 43.478 4.94 0.00 40.09 3.16
382 383 3.135994 ACGTCATGGTTACTGGAACAAC 58.864 45.455 4.94 0.00 40.09 3.32
383 384 3.478857 ACGTCATGGTTACTGGAACAA 57.521 42.857 4.94 0.00 40.09 2.83
384 385 3.395639 GAACGTCATGGTTACTGGAACA 58.604 45.455 4.94 0.00 40.09 3.18
385 386 2.740447 GGAACGTCATGGTTACTGGAAC 59.260 50.000 0.00 0.00 37.31 3.62
386 387 2.635915 AGGAACGTCATGGTTACTGGAA 59.364 45.455 0.00 0.00 39.60 3.53
387 388 2.253610 AGGAACGTCATGGTTACTGGA 58.746 47.619 0.00 0.00 39.60 3.86
388 389 2.762535 AGGAACGTCATGGTTACTGG 57.237 50.000 0.00 0.00 39.60 4.00
389 390 3.926616 AGAAGGAACGTCATGGTTACTG 58.073 45.455 0.84 0.00 40.19 2.74
390 391 4.566987 GAAGAAGGAACGTCATGGTTACT 58.433 43.478 0.00 0.00 42.90 2.24
391 392 3.367025 CGAAGAAGGAACGTCATGGTTAC 59.633 47.826 0.00 0.00 39.91 2.50
392 393 3.581755 CGAAGAAGGAACGTCATGGTTA 58.418 45.455 0.00 0.00 39.91 2.85
393 394 2.413837 CGAAGAAGGAACGTCATGGTT 58.586 47.619 0.00 0.00 39.91 3.67
394 395 1.939838 GCGAAGAAGGAACGTCATGGT 60.940 52.381 0.00 0.00 39.91 3.55
395 396 0.721718 GCGAAGAAGGAACGTCATGG 59.278 55.000 0.00 0.00 39.91 3.66
396 397 1.714794 AGCGAAGAAGGAACGTCATG 58.285 50.000 0.00 0.00 39.91 3.07
397 398 2.457366 AAGCGAAGAAGGAACGTCAT 57.543 45.000 0.00 0.00 39.91 3.06
398 399 2.234300 AAAGCGAAGAAGGAACGTCA 57.766 45.000 0.00 0.00 39.91 4.35
399 400 3.054878 TGTAAAGCGAAGAAGGAACGTC 58.945 45.455 0.00 0.00 37.02 4.34
400 401 2.798847 GTGTAAAGCGAAGAAGGAACGT 59.201 45.455 0.00 0.00 0.00 3.99
401 402 2.798283 TGTGTAAAGCGAAGAAGGAACG 59.202 45.455 0.00 0.00 0.00 3.95
402 403 4.712763 CATGTGTAAAGCGAAGAAGGAAC 58.287 43.478 0.00 0.00 0.00 3.62
403 404 3.188460 GCATGTGTAAAGCGAAGAAGGAA 59.812 43.478 0.00 0.00 0.00 3.36
404 405 2.742053 GCATGTGTAAAGCGAAGAAGGA 59.258 45.455 0.00 0.00 0.00 3.36
405 406 2.483877 TGCATGTGTAAAGCGAAGAAGG 59.516 45.455 0.00 0.00 0.00 3.46
406 407 3.811722 TGCATGTGTAAAGCGAAGAAG 57.188 42.857 0.00 0.00 0.00 2.85
407 408 4.764679 AATGCATGTGTAAAGCGAAGAA 57.235 36.364 0.00 0.00 0.00 2.52
408 409 4.764679 AAATGCATGTGTAAAGCGAAGA 57.235 36.364 0.00 0.00 0.00 2.87
409 410 6.032775 CAGTAAAATGCATGTGTAAAGCGAAG 59.967 38.462 0.00 0.00 0.00 3.79
410 411 5.855925 CAGTAAAATGCATGTGTAAAGCGAA 59.144 36.000 0.00 0.00 0.00 4.70
411 412 5.049060 ACAGTAAAATGCATGTGTAAAGCGA 60.049 36.000 0.00 0.00 0.00 4.93
412 413 5.153513 ACAGTAAAATGCATGTGTAAAGCG 58.846 37.500 0.00 0.00 0.00 4.68
413 414 6.251376 GCTACAGTAAAATGCATGTGTAAAGC 59.749 38.462 0.00 3.19 0.00 3.51
414 415 7.530010 AGCTACAGTAAAATGCATGTGTAAAG 58.470 34.615 0.00 0.00 0.00 1.85
415 416 7.447374 AGCTACAGTAAAATGCATGTGTAAA 57.553 32.000 0.00 0.00 0.00 2.01
416 417 7.447374 AAGCTACAGTAAAATGCATGTGTAA 57.553 32.000 0.00 0.00 0.00 2.41
417 418 6.183360 CGAAGCTACAGTAAAATGCATGTGTA 60.183 38.462 0.00 3.24 0.00 2.90
418 419 5.390885 CGAAGCTACAGTAAAATGCATGTGT 60.391 40.000 0.00 2.14 0.00 3.72
419 420 5.023920 CGAAGCTACAGTAAAATGCATGTG 58.976 41.667 0.00 0.00 0.00 3.21
420 421 4.695455 ACGAAGCTACAGTAAAATGCATGT 59.305 37.500 0.00 0.00 0.00 3.21
421 422 5.023920 CACGAAGCTACAGTAAAATGCATG 58.976 41.667 0.00 0.00 0.00 4.06
422 423 4.935205 TCACGAAGCTACAGTAAAATGCAT 59.065 37.500 0.00 0.00 0.00 3.96
423 424 4.151689 GTCACGAAGCTACAGTAAAATGCA 59.848 41.667 0.00 0.00 0.00 3.96
424 425 4.151689 TGTCACGAAGCTACAGTAAAATGC 59.848 41.667 0.00 0.00 0.00 3.56
425 426 5.839262 TGTCACGAAGCTACAGTAAAATG 57.161 39.130 0.00 0.00 0.00 2.32
426 427 6.398918 AGATGTCACGAAGCTACAGTAAAAT 58.601 36.000 0.00 0.00 0.00 1.82
427 428 5.779922 AGATGTCACGAAGCTACAGTAAAA 58.220 37.500 0.00 0.00 0.00 1.52
428 429 5.048294 TGAGATGTCACGAAGCTACAGTAAA 60.048 40.000 0.00 0.00 0.00 2.01
429 430 4.457949 TGAGATGTCACGAAGCTACAGTAA 59.542 41.667 0.00 0.00 0.00 2.24
430 431 4.007659 TGAGATGTCACGAAGCTACAGTA 58.992 43.478 0.00 0.00 0.00 2.74
431 432 2.820197 TGAGATGTCACGAAGCTACAGT 59.180 45.455 0.00 0.00 0.00 3.55
432 433 3.494045 TGAGATGTCACGAAGCTACAG 57.506 47.619 0.00 0.00 0.00 2.74
433 434 3.575630 GTTGAGATGTCACGAAGCTACA 58.424 45.455 0.00 0.00 30.10 2.74
434 435 2.924290 GGTTGAGATGTCACGAAGCTAC 59.076 50.000 0.00 0.00 30.10 3.58
435 436 2.826128 AGGTTGAGATGTCACGAAGCTA 59.174 45.455 0.00 0.00 30.10 3.32
436 437 1.620819 AGGTTGAGATGTCACGAAGCT 59.379 47.619 0.00 0.00 30.10 3.74
437 438 2.086054 AGGTTGAGATGTCACGAAGC 57.914 50.000 0.00 0.00 30.10 3.86
438 439 3.653344 TCAAGGTTGAGATGTCACGAAG 58.347 45.455 0.00 0.00 32.50 3.79
439 440 3.744238 TCAAGGTTGAGATGTCACGAA 57.256 42.857 0.00 0.00 32.50 3.85
450 451 4.425772 TCCTCTAACATCCTCAAGGTTGA 58.574 43.478 12.92 0.00 38.09 3.18
451 452 4.826274 TCCTCTAACATCCTCAAGGTTG 57.174 45.455 5.71 5.71 40.01 3.77
452 453 4.410555 GGATCCTCTAACATCCTCAAGGTT 59.589 45.833 3.84 0.00 36.39 3.50
453 454 3.970640 GGATCCTCTAACATCCTCAAGGT 59.029 47.826 3.84 0.00 36.39 3.50
454 455 3.969976 TGGATCCTCTAACATCCTCAAGG 59.030 47.826 14.23 0.00 39.62 3.61
455 456 4.653341 AGTGGATCCTCTAACATCCTCAAG 59.347 45.833 14.73 0.00 39.62 3.02
456 457 4.624913 AGTGGATCCTCTAACATCCTCAA 58.375 43.478 14.73 0.00 39.62 3.02
457 458 4.271807 AGTGGATCCTCTAACATCCTCA 57.728 45.455 14.73 0.00 39.62 3.86
458 459 4.039852 GGAAGTGGATCCTCTAACATCCTC 59.960 50.000 16.52 8.50 39.62 3.71
459 460 3.970640 GGAAGTGGATCCTCTAACATCCT 59.029 47.826 16.52 0.00 39.62 3.24
460 461 3.071747 GGGAAGTGGATCCTCTAACATCC 59.928 52.174 16.52 17.56 39.57 3.51
461 462 3.071747 GGGGAAGTGGATCCTCTAACATC 59.928 52.174 16.52 10.16 36.98 3.06
462 463 3.049344 GGGGAAGTGGATCCTCTAACAT 58.951 50.000 16.52 1.06 36.98 2.71
463 464 2.478292 GGGGAAGTGGATCCTCTAACA 58.522 52.381 16.52 0.00 36.98 2.41
464 465 1.769465 GGGGGAAGTGGATCCTCTAAC 59.231 57.143 16.52 13.01 40.09 2.34
465 466 1.691482 CGGGGGAAGTGGATCCTCTAA 60.691 57.143 16.52 0.00 40.09 2.10
466 467 0.105658 CGGGGGAAGTGGATCCTCTA 60.106 60.000 16.52 0.00 40.09 2.43
467 468 1.383248 CGGGGGAAGTGGATCCTCT 60.383 63.158 14.23 12.34 40.09 3.69
468 469 2.444256 CCGGGGGAAGTGGATCCTC 61.444 68.421 14.23 9.81 39.43 3.71
469 470 2.366972 CCGGGGGAAGTGGATCCT 60.367 66.667 14.23 0.00 39.57 3.24
470 471 4.191015 GCCGGGGGAAGTGGATCC 62.191 72.222 4.20 4.20 38.86 3.36
471 472 4.191015 GGCCGGGGGAAGTGGATC 62.191 72.222 2.18 0.00 0.00 3.36
486 487 3.353836 TTGCTTTCCTCACGCGGC 61.354 61.111 12.47 1.15 0.00 6.53
487 488 0.669318 TAGTTGCTTTCCTCACGCGG 60.669 55.000 12.47 0.00 0.00 6.46
488 489 1.144969 TTAGTTGCTTTCCTCACGCG 58.855 50.000 3.53 3.53 0.00 6.01
489 490 2.548480 AGTTTAGTTGCTTTCCTCACGC 59.452 45.455 0.00 0.00 0.00 5.34
490 491 3.120991 CGAGTTTAGTTGCTTTCCTCACG 60.121 47.826 0.00 0.00 0.00 4.35
491 492 3.186613 CCGAGTTTAGTTGCTTTCCTCAC 59.813 47.826 0.00 0.00 0.00 3.51
492 493 3.399330 CCGAGTTTAGTTGCTTTCCTCA 58.601 45.455 0.00 0.00 0.00 3.86
493 494 2.159824 GCCGAGTTTAGTTGCTTTCCTC 59.840 50.000 0.00 0.00 0.00 3.71
494 495 2.152016 GCCGAGTTTAGTTGCTTTCCT 58.848 47.619 0.00 0.00 0.00 3.36
495 496 1.136057 CGCCGAGTTTAGTTGCTTTCC 60.136 52.381 0.00 0.00 0.00 3.13
496 497 1.724973 GCGCCGAGTTTAGTTGCTTTC 60.725 52.381 0.00 0.00 0.00 2.62
497 498 0.237498 GCGCCGAGTTTAGTTGCTTT 59.763 50.000 0.00 0.00 0.00 3.51
498 499 0.602905 AGCGCCGAGTTTAGTTGCTT 60.603 50.000 2.29 0.00 0.00 3.91
499 500 1.004918 AGCGCCGAGTTTAGTTGCT 60.005 52.632 2.29 0.00 0.00 3.91
500 501 1.132640 CAGCGCCGAGTTTAGTTGC 59.867 57.895 2.29 0.00 0.00 4.17
501 502 1.132640 GCAGCGCCGAGTTTAGTTG 59.867 57.895 2.29 0.00 0.00 3.16
502 503 1.291877 CTGCAGCGCCGAGTTTAGTT 61.292 55.000 2.29 0.00 0.00 2.24
503 504 1.738099 CTGCAGCGCCGAGTTTAGT 60.738 57.895 2.29 0.00 0.00 2.24
504 505 3.084579 CTGCAGCGCCGAGTTTAG 58.915 61.111 2.29 0.00 0.00 1.85
505 506 3.118454 GCTGCAGCGCCGAGTTTA 61.118 61.111 25.23 0.00 0.00 2.01
522 523 3.932580 TTGTGACGCCGCTAGCCAG 62.933 63.158 9.66 1.62 38.78 4.85
523 524 3.932580 CTTGTGACGCCGCTAGCCA 62.933 63.158 9.66 0.00 38.78 4.75
524 525 3.188786 CTTGTGACGCCGCTAGCC 61.189 66.667 9.66 0.00 38.78 3.93
525 526 1.956620 GAACTTGTGACGCCGCTAGC 61.957 60.000 4.06 4.06 38.52 3.42
526 527 1.352156 GGAACTTGTGACGCCGCTAG 61.352 60.000 0.00 0.00 0.00 3.42
527 528 1.373748 GGAACTTGTGACGCCGCTA 60.374 57.895 0.00 0.00 0.00 4.26
528 529 2.665185 GGAACTTGTGACGCCGCT 60.665 61.111 0.00 0.00 0.00 5.52
529 530 2.954753 CTGGAACTTGTGACGCCGC 61.955 63.158 0.00 0.00 0.00 6.53
530 531 1.594293 ACTGGAACTTGTGACGCCG 60.594 57.895 0.00 0.00 0.00 6.46
531 532 1.941812 CACTGGAACTTGTGACGCC 59.058 57.895 0.00 0.00 36.11 5.68
532 533 1.279840 GCACTGGAACTTGTGACGC 59.720 57.895 0.00 0.00 36.11 5.19
533 534 0.532862 AGGCACTGGAACTTGTGACG 60.533 55.000 0.00 0.00 43.66 4.35
534 535 1.334869 CAAGGCACTGGAACTTGTGAC 59.665 52.381 0.00 0.00 40.86 3.67
535 536 1.211703 TCAAGGCACTGGAACTTGTGA 59.788 47.619 0.00 0.00 34.02 3.58
536 537 1.679139 TCAAGGCACTGGAACTTGTG 58.321 50.000 0.00 0.00 34.02 3.33
537 538 2.301346 CTTCAAGGCACTGGAACTTGT 58.699 47.619 0.00 0.00 44.63 3.16
538 539 1.000938 GCTTCAAGGCACTGGAACTTG 60.001 52.381 0.00 0.00 44.63 3.16
539 540 1.322442 GCTTCAAGGCACTGGAACTT 58.678 50.000 0.00 0.00 44.63 2.66
540 541 0.886490 CGCTTCAAGGCACTGGAACT 60.886 55.000 0.00 0.00 44.63 3.01
541 542 1.166531 ACGCTTCAAGGCACTGGAAC 61.167 55.000 0.00 0.00 44.63 3.62
543 544 1.301716 GACGCTTCAAGGCACTGGA 60.302 57.895 0.00 0.00 40.86 3.86
544 545 2.671177 CGACGCTTCAAGGCACTGG 61.671 63.158 0.00 0.00 40.86 4.00
545 546 2.856032 CGACGCTTCAAGGCACTG 59.144 61.111 0.00 0.00 40.86 3.66
547 548 4.090057 GGCGACGCTTCAAGGCAC 62.090 66.667 20.77 0.00 0.00 5.01
548 549 4.314440 AGGCGACGCTTCAAGGCA 62.314 61.111 20.77 0.00 0.00 4.75
549 550 3.491652 GAGGCGACGCTTCAAGGC 61.492 66.667 25.04 4.50 34.72 4.35
550 551 2.097038 CAGAGGCGACGCTTCAAGG 61.097 63.158 30.12 16.94 39.02 3.61
551 552 2.734673 GCAGAGGCGACGCTTCAAG 61.735 63.158 30.12 22.80 39.02 3.02
552 553 2.738521 GCAGAGGCGACGCTTCAA 60.739 61.111 30.12 0.00 39.02 2.69
553 554 3.513768 TTGCAGAGGCGACGCTTCA 62.514 57.895 30.12 10.92 45.35 3.02
554 555 2.734673 CTTGCAGAGGCGACGCTTC 61.735 63.158 22.93 22.93 45.35 3.86
555 556 2.740055 CTTGCAGAGGCGACGCTT 60.740 61.111 20.77 13.06 45.35 4.68
556 557 4.749310 CCTTGCAGAGGCGACGCT 62.749 66.667 20.77 5.59 45.35 5.07
564 565 7.481275 TTTTGAATTTTTAAGCCTTGCAGAG 57.519 32.000 0.00 0.00 0.00 3.35
565 566 8.449251 AATTTTGAATTTTTAAGCCTTGCAGA 57.551 26.923 0.00 0.00 0.00 4.26
566 567 8.562052 AGAATTTTGAATTTTTAAGCCTTGCAG 58.438 29.630 0.00 0.00 0.00 4.41
567 568 8.344098 CAGAATTTTGAATTTTTAAGCCTTGCA 58.656 29.630 0.00 0.00 0.00 4.08
568 569 8.558700 TCAGAATTTTGAATTTTTAAGCCTTGC 58.441 29.630 0.00 0.00 0.00 4.01
571 572 9.056005 GGTTCAGAATTTTGAATTTTTAAGCCT 57.944 29.630 13.89 0.00 39.13 4.58
572 573 8.835439 TGGTTCAGAATTTTGAATTTTTAAGCC 58.165 29.630 13.89 8.68 39.13 4.35
573 574 9.868389 CTGGTTCAGAATTTTGAATTTTTAAGC 57.132 29.630 13.89 1.59 39.13 3.09
578 579 8.183536 GCAAACTGGTTCAGAATTTTGAATTTT 58.816 29.630 13.89 8.86 39.13 1.82
579 580 7.553760 AGCAAACTGGTTCAGAATTTTGAATTT 59.446 29.630 13.89 8.08 39.13 1.82
580 581 7.049754 AGCAAACTGGTTCAGAATTTTGAATT 58.950 30.769 13.89 2.69 39.13 2.17
581 582 6.585416 AGCAAACTGGTTCAGAATTTTGAAT 58.415 32.000 13.89 0.00 39.13 2.57
582 583 5.976458 AGCAAACTGGTTCAGAATTTTGAA 58.024 33.333 7.30 7.30 31.21 2.69
583 584 5.596836 AGCAAACTGGTTCAGAATTTTGA 57.403 34.783 11.23 0.00 31.21 2.69
594 595 0.106015 AGCCTGGAAGCAAACTGGTT 60.106 50.000 0.00 0.00 41.25 3.67
595 596 0.538287 GAGCCTGGAAGCAAACTGGT 60.538 55.000 0.00 0.00 34.23 4.00
596 597 1.246737 GGAGCCTGGAAGCAAACTGG 61.247 60.000 0.00 0.00 34.23 4.00
597 598 1.246737 GGGAGCCTGGAAGCAAACTG 61.247 60.000 0.00 0.00 34.23 3.16
598 599 1.075659 GGGAGCCTGGAAGCAAACT 59.924 57.895 0.00 0.00 34.23 2.66
599 600 1.228552 TGGGAGCCTGGAAGCAAAC 60.229 57.895 0.00 0.00 34.23 2.93
600 601 1.075482 CTGGGAGCCTGGAAGCAAA 59.925 57.895 0.00 0.00 34.23 3.68
601 602 2.759114 CTGGGAGCCTGGAAGCAA 59.241 61.111 0.00 0.00 34.23 3.91
602 603 4.039092 GCTGGGAGCCTGGAAGCA 62.039 66.667 0.00 0.00 34.48 3.91
616 617 0.249405 TTTTTCCTTTGCCAGCGCTG 60.249 50.000 30.52 30.52 35.36 5.18
617 618 0.032540 CTTTTTCCTTTGCCAGCGCT 59.967 50.000 2.64 2.64 35.36 5.92
618 619 0.249447 ACTTTTTCCTTTGCCAGCGC 60.249 50.000 0.00 0.00 0.00 5.92
619 620 2.223537 AACTTTTTCCTTTGCCAGCG 57.776 45.000 0.00 0.00 0.00 5.18
620 621 3.489416 CGTAAACTTTTTCCTTTGCCAGC 59.511 43.478 0.00 0.00 0.00 4.85
621 622 4.927422 TCGTAAACTTTTTCCTTTGCCAG 58.073 39.130 0.00 0.00 0.00 4.85
622 623 4.399934 ACTCGTAAACTTTTTCCTTTGCCA 59.600 37.500 0.00 0.00 0.00 4.92
623 624 4.928601 ACTCGTAAACTTTTTCCTTTGCC 58.071 39.130 0.00 0.00 0.00 4.52
624 625 7.974243 TTTACTCGTAAACTTTTTCCTTTGC 57.026 32.000 0.00 0.00 30.78 3.68
626 627 9.027129 GCAATTTACTCGTAAACTTTTTCCTTT 57.973 29.630 4.52 0.00 37.80 3.11
627 628 8.192110 TGCAATTTACTCGTAAACTTTTTCCTT 58.808 29.630 4.52 0.00 37.80 3.36
628 629 7.646526 GTGCAATTTACTCGTAAACTTTTTCCT 59.353 33.333 4.52 0.00 37.80 3.36
629 630 7.432838 TGTGCAATTTACTCGTAAACTTTTTCC 59.567 33.333 4.52 0.00 37.80 3.13
630 631 8.330302 TGTGCAATTTACTCGTAAACTTTTTC 57.670 30.769 4.52 0.00 37.80 2.29
631 632 8.185505 TCTGTGCAATTTACTCGTAAACTTTTT 58.814 29.630 4.52 0.00 37.80 1.94
632 633 7.699566 TCTGTGCAATTTACTCGTAAACTTTT 58.300 30.769 4.52 0.00 37.80 2.27
633 634 7.254227 TCTGTGCAATTTACTCGTAAACTTT 57.746 32.000 4.52 0.00 37.80 2.66
634 635 6.854496 TCTGTGCAATTTACTCGTAAACTT 57.146 33.333 4.52 0.00 37.80 2.66
635 636 6.854496 TTCTGTGCAATTTACTCGTAAACT 57.146 33.333 4.52 0.00 37.80 2.66
636 637 9.047871 GTATTTCTGTGCAATTTACTCGTAAAC 57.952 33.333 4.52 0.00 37.80 2.01
637 638 8.231837 GGTATTTCTGTGCAATTTACTCGTAAA 58.768 33.333 4.87 4.87 39.12 2.01
638 639 7.388224 TGGTATTTCTGTGCAATTTACTCGTAA 59.612 33.333 0.00 0.00 0.00 3.18
639 640 6.874664 TGGTATTTCTGTGCAATTTACTCGTA 59.125 34.615 0.00 0.00 0.00 3.43
640 641 5.703592 TGGTATTTCTGTGCAATTTACTCGT 59.296 36.000 0.00 0.00 0.00 4.18
659 660 4.484026 TCCAATGCCCCAATTATGGTAT 57.516 40.909 0.00 0.00 46.01 2.73
665 666 2.109774 CTGCTTCCAATGCCCCAATTA 58.890 47.619 0.00 0.00 0.00 1.40
1193 1204 3.457380 AGTTACCATCATGTGCAGAGGAT 59.543 43.478 5.02 5.02 0.00 3.24
1957 2010 9.853177 TGGAAAAATTAGAAGGGCAAAATTTAA 57.147 25.926 0.00 0.00 32.68 1.52
2213 2266 4.292306 ACTGAAATCCACAACCCTATCCTT 59.708 41.667 0.00 0.00 0.00 3.36
2610 2663 4.017958 TCTTCTCCTTCAGCTTCTCCTCTA 60.018 45.833 0.00 0.00 0.00 2.43
3245 7409 5.185056 GCCATGTAATGTTCAAAACTAGGGT 59.815 40.000 0.00 0.00 44.81 4.34
3246 7410 5.184864 TGCCATGTAATGTTCAAAACTAGGG 59.815 40.000 0.00 0.00 44.81 3.53
3417 8082 2.063378 GGAGAGGTGCTGGGAGAGG 61.063 68.421 0.00 0.00 0.00 3.69
3418 8083 2.063378 GGGAGAGGTGCTGGGAGAG 61.063 68.421 0.00 0.00 0.00 3.20
3419 8084 2.039624 GGGAGAGGTGCTGGGAGA 59.960 66.667 0.00 0.00 0.00 3.71
3420 8085 2.284921 TGGGAGAGGTGCTGGGAG 60.285 66.667 0.00 0.00 0.00 4.30
3421 8086 2.284921 CTGGGAGAGGTGCTGGGA 60.285 66.667 0.00 0.00 0.00 4.37
3422 8087 4.106925 GCTGGGAGAGGTGCTGGG 62.107 72.222 0.00 0.00 0.00 4.45
3423 8088 3.324930 TGCTGGGAGAGGTGCTGG 61.325 66.667 0.00 0.00 0.00 4.85
3424 8089 2.046507 GTGCTGGGAGAGGTGCTG 60.047 66.667 0.00 0.00 0.00 4.41
3425 8090 3.325753 GGTGCTGGGAGAGGTGCT 61.326 66.667 0.00 0.00 0.00 4.40
3426 8091 3.325753 AGGTGCTGGGAGAGGTGC 61.326 66.667 0.00 0.00 0.00 5.01
3427 8092 2.667418 CAGGTGCTGGGAGAGGTG 59.333 66.667 0.00 0.00 0.00 4.00
3459 8136 4.648626 TGCTGGGACTGGTGCTGC 62.649 66.667 0.00 0.00 0.00 5.25
3484 8185 3.333219 CTGGGAGAGGGGCTGCAA 61.333 66.667 0.50 0.00 36.54 4.08
3494 8195 2.235602 CTGGGAGAGGAGCTGGGAGA 62.236 65.000 0.00 0.00 0.00 3.71
3495 8196 1.761667 CTGGGAGAGGAGCTGGGAG 60.762 68.421 0.00 0.00 0.00 4.30
3496 8197 2.366167 CTGGGAGAGGAGCTGGGA 59.634 66.667 0.00 0.00 0.00 4.37
3497 8198 3.478274 GCTGGGAGAGGAGCTGGG 61.478 72.222 0.00 0.00 32.12 4.45
3498 8199 2.365370 AGCTGGGAGAGGAGCTGG 60.365 66.667 0.00 0.00 44.03 4.85
3499 8200 2.433994 GGAGCTGGGAGAGGAGCTG 61.434 68.421 0.00 0.00 45.72 4.24
3501 8202 2.042025 AGGAGCTGGGAGAGGAGC 60.042 66.667 0.00 0.00 35.28 4.70
3502 8203 0.468029 GAGAGGAGCTGGGAGAGGAG 60.468 65.000 0.00 0.00 0.00 3.69
3503 8204 1.618030 GAGAGGAGCTGGGAGAGGA 59.382 63.158 0.00 0.00 0.00 3.71
3504 8205 1.457455 GGAGAGGAGCTGGGAGAGG 60.457 68.421 0.00 0.00 0.00 3.69
3505 8206 1.457455 GGGAGAGGAGCTGGGAGAG 60.457 68.421 0.00 0.00 0.00 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.