Multiple sequence alignment - TraesCS7D01G157000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G157000 chr7D 100.000 4182 0 0 1 4182 104750655 104746474 0.000000e+00 7723
1 TraesCS7D01G157000 chr7D 81.118 805 126 20 1552 2349 392746506 392745721 4.590000e-174 621
2 TraesCS7D01G157000 chr7D 80.351 285 56 0 2065 2349 392263992 392263708 2.530000e-52 217
3 TraesCS7D01G157000 chr7D 90.977 133 12 0 1052 1184 392746722 392746590 3.320000e-41 180
4 TraesCS7D01G157000 chr7A 91.092 2638 123 57 799 3365 109265211 109262615 0.000000e+00 3467
5 TraesCS7D01G157000 chr7A 81.491 805 123 20 1552 2349 444793323 444792538 4.560000e-179 638
6 TraesCS7D01G157000 chr7A 90.713 463 29 8 2635 3094 109239772 109239321 4.620000e-169 604
7 TraesCS7D01G157000 chr7A 90.977 133 12 0 1052 1184 444793536 444793404 3.320000e-41 180
8 TraesCS7D01G157000 chr7A 89.431 123 8 3 693 810 109265356 109265234 2.600000e-32 150
9 TraesCS7D01G157000 chr7A 86.567 134 18 0 1052 1185 443965174 443965041 9.370000e-32 148
10 TraesCS7D01G157000 chr7B 90.889 2305 101 51 750 2981 63169952 63172220 0.000000e+00 2992
11 TraesCS7D01G157000 chr7B 80.994 805 127 20 1552 2349 388954610 388953825 2.140000e-172 616
12 TraesCS7D01G157000 chr7B 93.915 378 16 3 3081 3458 63172319 63172689 7.850000e-157 564
13 TraesCS7D01G157000 chr7B 81.313 396 62 10 1552 1941 388597632 388597243 1.130000e-80 311
14 TraesCS7D01G157000 chr7B 82.105 285 51 0 2065 2349 388597034 388596750 1.160000e-60 244
15 TraesCS7D01G157000 chr7B 91.538 130 11 0 1055 1184 388954845 388954716 3.320000e-41 180
16 TraesCS7D01G157000 chr7B 80.072 276 23 19 280 552 63169479 63169725 4.300000e-40 176
17 TraesCS7D01G157000 chr7B 89.720 107 10 1 1 106 63169346 63169452 7.290000e-28 135
18 TraesCS7D01G157000 chr4D 96.569 612 21 0 3571 4182 385713552 385714163 0.000000e+00 1014
19 TraesCS7D01G157000 chr3B 96.382 608 22 0 3575 4182 598996878 598997485 0.000000e+00 1002
20 TraesCS7D01G157000 chr5D 95.895 609 24 1 3574 4182 158805726 158806333 0.000000e+00 985
21 TraesCS7D01G157000 chr5D 94.262 610 32 2 3574 4182 552794469 552793862 0.000000e+00 929
22 TraesCS7D01G157000 chr1D 95.254 611 26 1 3572 4182 98658971 98659578 0.000000e+00 965
23 TraesCS7D01G157000 chr1D 80.362 774 119 26 1591 2349 40000467 39999712 1.310000e-154 556
24 TraesCS7D01G157000 chr5A 94.080 625 33 4 3560 4182 164075278 164074656 0.000000e+00 946
25 TraesCS7D01G157000 chr2A 93.914 608 36 1 3575 4182 148845197 148845803 0.000000e+00 917
26 TraesCS7D01G157000 chr2A 75.416 781 149 33 1583 2349 570931482 570932233 5.180000e-89 339
27 TraesCS7D01G157000 chr2A 87.879 132 16 0 1052 1183 775747350 775747481 5.600000e-34 156
28 TraesCS7D01G157000 chr2D 93.648 614 36 3 3572 4182 132697284 132697897 0.000000e+00 915
29 TraesCS7D01G157000 chr2D 75.734 783 147 33 1581 2349 419032178 419031425 1.850000e-93 353
30 TraesCS7D01G157000 chr2D 80.290 345 60 8 2009 2349 648636103 648635763 1.930000e-63 254
31 TraesCS7D01G157000 chr2D 87.879 132 16 0 1052 1183 648636970 648636839 5.600000e-34 156
32 TraesCS7D01G157000 chr1A 93.904 607 35 1 3578 4182 5654769 5654163 0.000000e+00 915
33 TraesCS7D01G157000 chr1A 80.466 773 120 25 1591 2349 39636876 39636121 2.820000e-156 562
34 TraesCS7D01G157000 chr1B 80.928 776 114 26 1591 2349 59634636 59635394 2.170000e-162 582
35 TraesCS7D01G157000 chr2B 79.949 389 67 9 1581 1965 491054467 491054086 4.120000e-70 276
36 TraesCS7D01G157000 chr2B 79.036 415 67 17 1939 2349 784717925 784717527 2.480000e-67 267
37 TraesCS7D01G157000 chr2B 86.364 132 18 0 1052 1183 784718744 784718613 1.210000e-30 145


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G157000 chr7D 104746474 104750655 4181 True 7723.00 7723 100.0000 1 4182 1 chr7D.!!$R1 4181
1 TraesCS7D01G157000 chr7D 392745721 392746722 1001 True 400.50 621 86.0475 1052 2349 2 chr7D.!!$R3 1297
2 TraesCS7D01G157000 chr7A 109262615 109265356 2741 True 1808.50 3467 90.2615 693 3365 2 chr7A.!!$R3 2672
3 TraesCS7D01G157000 chr7A 444792538 444793536 998 True 409.00 638 86.2340 1052 2349 2 chr7A.!!$R4 1297
4 TraesCS7D01G157000 chr7B 63169346 63172689 3343 False 966.75 2992 88.6490 1 3458 4 chr7B.!!$F1 3457
5 TraesCS7D01G157000 chr7B 388953825 388954845 1020 True 398.00 616 86.2660 1055 2349 2 chr7B.!!$R2 1294
6 TraesCS7D01G157000 chr7B 388596750 388597632 882 True 277.50 311 81.7090 1552 2349 2 chr7B.!!$R1 797
7 TraesCS7D01G157000 chr4D 385713552 385714163 611 False 1014.00 1014 96.5690 3571 4182 1 chr4D.!!$F1 611
8 TraesCS7D01G157000 chr3B 598996878 598997485 607 False 1002.00 1002 96.3820 3575 4182 1 chr3B.!!$F1 607
9 TraesCS7D01G157000 chr5D 158805726 158806333 607 False 985.00 985 95.8950 3574 4182 1 chr5D.!!$F1 608
10 TraesCS7D01G157000 chr5D 552793862 552794469 607 True 929.00 929 94.2620 3574 4182 1 chr5D.!!$R1 608
11 TraesCS7D01G157000 chr1D 98658971 98659578 607 False 965.00 965 95.2540 3572 4182 1 chr1D.!!$F1 610
12 TraesCS7D01G157000 chr1D 39999712 40000467 755 True 556.00 556 80.3620 1591 2349 1 chr1D.!!$R1 758
13 TraesCS7D01G157000 chr5A 164074656 164075278 622 True 946.00 946 94.0800 3560 4182 1 chr5A.!!$R1 622
14 TraesCS7D01G157000 chr2A 148845197 148845803 606 False 917.00 917 93.9140 3575 4182 1 chr2A.!!$F1 607
15 TraesCS7D01G157000 chr2A 570931482 570932233 751 False 339.00 339 75.4160 1583 2349 1 chr2A.!!$F2 766
16 TraesCS7D01G157000 chr2D 132697284 132697897 613 False 915.00 915 93.6480 3572 4182 1 chr2D.!!$F1 610
17 TraesCS7D01G157000 chr2D 419031425 419032178 753 True 353.00 353 75.7340 1581 2349 1 chr2D.!!$R1 768
18 TraesCS7D01G157000 chr2D 648635763 648636970 1207 True 205.00 254 84.0845 1052 2349 2 chr2D.!!$R2 1297
19 TraesCS7D01G157000 chr1A 5654163 5654769 606 True 915.00 915 93.9040 3578 4182 1 chr1A.!!$R1 604
20 TraesCS7D01G157000 chr1A 39636121 39636876 755 True 562.00 562 80.4660 1591 2349 1 chr1A.!!$R2 758
21 TraesCS7D01G157000 chr1B 59634636 59635394 758 False 582.00 582 80.9280 1591 2349 1 chr1B.!!$F1 758
22 TraesCS7D01G157000 chr2B 784717527 784718744 1217 True 206.00 267 82.7000 1052 2349 2 chr2B.!!$R2 1297

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
653 735 0.101759 TACGGCGGAGGATCTTTTCG 59.898 55.0 13.24 0.0 33.73 3.46 F
655 737 0.739813 CGGCGGAGGATCTTTTCGTT 60.740 55.0 0.00 0.0 33.73 3.85 F
2370 2804 0.097499 ATTACATCGTCGTCGTCGCA 59.903 50.0 7.01 0.0 38.33 5.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2139 2573 0.036858 GCTTCTTGGACGGCTTCTCT 60.037 55.0 0.00 0.0 0.0 3.10 R
2416 2856 0.389426 CACAAGGCGCGGTTAGTACT 60.389 55.0 8.83 0.0 0.0 2.73 R
3506 4017 0.249447 GAAAGCACACCCAACCAAGC 60.249 55.0 0.00 0.0 0.0 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 9.846248 GCTCATGTATTAGAAAAATGTTCAAGT 57.154 29.630 0.00 0.00 0.00 3.16
226 227 9.516546 AAATAAACCGAGAAATAAAGAGAAGGT 57.483 29.630 0.00 0.00 0.00 3.50
229 230 8.913487 AAACCGAGAAATAAAGAGAAGGTAAA 57.087 30.769 0.00 0.00 0.00 2.01
230 231 8.549338 AACCGAGAAATAAAGAGAAGGTAAAG 57.451 34.615 0.00 0.00 0.00 1.85
231 232 7.904205 ACCGAGAAATAAAGAGAAGGTAAAGA 58.096 34.615 0.00 0.00 0.00 2.52
232 233 7.818446 ACCGAGAAATAAAGAGAAGGTAAAGAC 59.182 37.037 0.00 0.00 0.00 3.01
233 234 8.035984 CCGAGAAATAAAGAGAAGGTAAAGACT 58.964 37.037 0.00 0.00 0.00 3.24
327 328 4.132336 GAGAAACCAAAAGAACCGGTACT 58.868 43.478 8.00 0.00 31.12 2.73
329 330 5.683681 AGAAACCAAAAGAACCGGTACTAA 58.316 37.500 8.00 0.00 31.12 2.24
368 370 4.484872 GAGTTGGGCCGGCCTACC 62.485 72.222 42.70 31.92 36.10 3.18
396 400 1.069090 CCTGTGCGCCGTGGTATAT 59.931 57.895 4.18 0.00 0.00 0.86
400 404 1.227409 TGCGCCGTGGTATATGTGG 60.227 57.895 4.18 0.00 0.00 4.17
401 405 2.604174 GCGCCGTGGTATATGTGGC 61.604 63.158 0.00 0.00 42.29 5.01
406 410 2.028476 GCCGTGGTATATGTGGCAGATA 60.028 50.000 6.82 6.82 45.06 1.98
416 420 1.210234 TGTGGCAGATAGTGGATGTGG 59.790 52.381 0.00 0.00 29.33 4.17
417 421 1.486310 GTGGCAGATAGTGGATGTGGA 59.514 52.381 0.00 0.00 29.33 4.02
418 422 2.105477 GTGGCAGATAGTGGATGTGGAT 59.895 50.000 0.00 0.00 29.33 3.41
419 423 2.779430 TGGCAGATAGTGGATGTGGATT 59.221 45.455 0.00 0.00 29.33 3.01
420 424 3.202818 TGGCAGATAGTGGATGTGGATTT 59.797 43.478 0.00 0.00 29.33 2.17
421 425 3.567164 GGCAGATAGTGGATGTGGATTTG 59.433 47.826 0.00 0.00 29.33 2.32
422 426 3.004106 GCAGATAGTGGATGTGGATTTGC 59.996 47.826 0.00 0.00 29.33 3.68
423 427 4.458397 CAGATAGTGGATGTGGATTTGCT 58.542 43.478 0.00 0.00 0.00 3.91
424 428 4.514441 CAGATAGTGGATGTGGATTTGCTC 59.486 45.833 0.00 0.00 0.00 4.26
425 429 2.885135 AGTGGATGTGGATTTGCTCA 57.115 45.000 0.00 0.00 0.00 4.26
426 430 3.159213 AGTGGATGTGGATTTGCTCAA 57.841 42.857 0.00 0.00 0.00 3.02
427 431 2.821969 AGTGGATGTGGATTTGCTCAAC 59.178 45.455 0.00 0.00 0.00 3.18
428 432 2.557924 GTGGATGTGGATTTGCTCAACA 59.442 45.455 0.00 0.00 42.11 3.33
429 433 3.005684 GTGGATGTGGATTTGCTCAACAA 59.994 43.478 0.00 0.00 41.23 2.83
475 479 6.777091 TGGAAAATGAAAAGGATGAAGAGTGA 59.223 34.615 0.00 0.00 0.00 3.41
480 484 9.525826 AAATGAAAAGGATGAAGAGTGATAAGT 57.474 29.630 0.00 0.00 0.00 2.24
528 535 9.424319 GATAATGTTGATTGATCTGGTATACGT 57.576 33.333 0.00 0.00 0.00 3.57
530 537 7.715265 ATGTTGATTGATCTGGTATACGTTC 57.285 36.000 0.00 0.00 0.00 3.95
578 585 5.585820 ACATGATTGATGCTAAACATGCA 57.414 34.783 0.00 0.00 41.66 3.96
579 586 5.968254 ACATGATTGATGCTAAACATGCAA 58.032 33.333 0.00 0.00 41.66 4.08
588 670 2.603652 GCTAAACATGCAACGTCGGTTT 60.604 45.455 0.00 0.00 32.98 3.27
607 689 1.991121 TGTTATACGGCGGAGGATCT 58.009 50.000 13.24 0.00 33.73 2.75
615 697 2.281345 CGGAGGATCTGCATGCCC 60.281 66.667 16.68 9.06 32.86 5.36
616 698 2.281345 GGAGGATCTGCATGCCCG 60.281 66.667 16.68 6.48 33.73 6.13
617 699 2.507944 GAGGATCTGCATGCCCGT 59.492 61.111 16.68 0.00 0.00 5.28
618 700 1.596477 GAGGATCTGCATGCCCGTC 60.596 63.158 16.68 9.84 0.00 4.79
620 702 2.190313 GATCTGCATGCCCGTCCA 59.810 61.111 16.68 0.00 0.00 4.02
621 703 1.451927 GATCTGCATGCCCGTCCAA 60.452 57.895 16.68 0.00 0.00 3.53
624 706 0.254462 TCTGCATGCCCGTCCAAATA 59.746 50.000 16.68 0.00 0.00 1.40
625 707 1.102154 CTGCATGCCCGTCCAAATAA 58.898 50.000 16.68 0.00 0.00 1.40
627 709 2.101249 CTGCATGCCCGTCCAAATAAAT 59.899 45.455 16.68 0.00 0.00 1.40
628 710 3.291584 TGCATGCCCGTCCAAATAAATA 58.708 40.909 16.68 0.00 0.00 1.40
629 711 3.701542 TGCATGCCCGTCCAAATAAATAA 59.298 39.130 16.68 0.00 0.00 1.40
630 712 4.160439 TGCATGCCCGTCCAAATAAATAAA 59.840 37.500 16.68 0.00 0.00 1.40
631 713 4.506288 GCATGCCCGTCCAAATAAATAAAC 59.494 41.667 6.36 0.00 0.00 2.01
632 714 5.655488 CATGCCCGTCCAAATAAATAAACA 58.345 37.500 0.00 0.00 0.00 2.83
633 715 5.723672 TGCCCGTCCAAATAAATAAACAA 57.276 34.783 0.00 0.00 0.00 2.83
634 716 6.287589 TGCCCGTCCAAATAAATAAACAAT 57.712 33.333 0.00 0.00 0.00 2.71
635 717 7.406031 TGCCCGTCCAAATAAATAAACAATA 57.594 32.000 0.00 0.00 0.00 1.90
636 718 7.259161 TGCCCGTCCAAATAAATAAACAATAC 58.741 34.615 0.00 0.00 0.00 1.89
637 719 6.415573 GCCCGTCCAAATAAATAAACAATACG 59.584 38.462 0.00 0.00 0.00 3.06
638 720 6.913673 CCCGTCCAAATAAATAAACAATACGG 59.086 38.462 0.00 0.00 43.34 4.02
639 721 6.415573 CCGTCCAAATAAATAAACAATACGGC 59.584 38.462 0.00 0.00 38.57 5.68
640 722 6.139482 CGTCCAAATAAATAAACAATACGGCG 59.861 38.462 4.80 4.80 0.00 6.46
641 723 6.415573 GTCCAAATAAATAAACAATACGGCGG 59.584 38.462 13.24 0.00 0.00 6.13
642 724 6.318144 TCCAAATAAATAAACAATACGGCGGA 59.682 34.615 13.24 1.23 0.00 5.54
643 725 6.635239 CCAAATAAATAAACAATACGGCGGAG 59.365 38.462 13.24 0.00 0.00 4.63
644 726 5.934935 ATAAATAAACAATACGGCGGAGG 57.065 39.130 13.24 1.08 0.00 4.30
645 727 3.547054 AATAAACAATACGGCGGAGGA 57.453 42.857 13.24 0.00 0.00 3.71
646 728 3.764237 ATAAACAATACGGCGGAGGAT 57.236 42.857 13.24 0.00 0.00 3.24
647 729 1.949465 AAACAATACGGCGGAGGATC 58.051 50.000 13.24 0.00 0.00 3.36
648 730 1.120530 AACAATACGGCGGAGGATCT 58.879 50.000 13.24 0.00 33.73 2.75
649 731 1.120530 ACAATACGGCGGAGGATCTT 58.879 50.000 13.24 0.00 33.73 2.40
650 732 1.485066 ACAATACGGCGGAGGATCTTT 59.515 47.619 13.24 0.00 33.73 2.52
651 733 2.093128 ACAATACGGCGGAGGATCTTTT 60.093 45.455 13.24 0.00 33.73 2.27
652 734 2.528041 ATACGGCGGAGGATCTTTTC 57.472 50.000 13.24 0.00 33.73 2.29
653 735 0.101759 TACGGCGGAGGATCTTTTCG 59.898 55.000 13.24 0.00 33.73 3.46
654 736 1.153628 CGGCGGAGGATCTTTTCGT 60.154 57.895 0.00 0.00 33.73 3.85
655 737 0.739813 CGGCGGAGGATCTTTTCGTT 60.740 55.000 0.00 0.00 33.73 3.85
656 738 1.007580 GGCGGAGGATCTTTTCGTTC 58.992 55.000 0.00 0.00 33.73 3.95
685 769 3.665226 CGAGATCGGCCGAGGAGG 61.665 72.222 33.87 18.39 44.97 4.30
869 1001 4.697756 GCGTGTGGTGGCTGGCTA 62.698 66.667 2.00 0.00 0.00 3.93
924 1056 6.623986 GCACTTGACTAGTATCTATCCATCCG 60.624 46.154 0.00 0.00 34.56 4.18
1192 1339 4.460683 GATGGTACGTGCCCGCCA 62.461 66.667 20.66 9.80 37.70 5.69
1194 1341 4.992511 TGGTACGTGCCCGCCAAC 62.993 66.667 20.66 0.00 37.70 3.77
1196 1343 4.692475 GTACGTGCCCGCCAACCT 62.692 66.667 0.00 0.00 37.70 3.50
1197 1344 4.382320 TACGTGCCCGCCAACCTC 62.382 66.667 0.00 0.00 37.70 3.85
1201 1380 3.249189 TGCCCGCCAACCTCTCTT 61.249 61.111 0.00 0.00 0.00 2.85
1210 1389 1.163554 CAACCTCTCTTCTGCTTGCC 58.836 55.000 0.00 0.00 0.00 4.52
1232 1411 3.185246 ACGATCAGATTGGATTTCGCT 57.815 42.857 2.51 0.00 0.00 4.93
1267 1455 5.699458 ACGTTCACTCGTTTAGATTGGATTT 59.301 36.000 0.00 0.00 41.37 2.17
1294 1482 7.502120 TTTCTAGATTATTAGCGTACCTCGT 57.498 36.000 0.00 0.00 42.13 4.18
1343 1535 6.919115 TCATGCATGATCCGATTTATTTTGTG 59.081 34.615 25.42 0.00 0.00 3.33
1347 1539 7.140705 GCATGATCCGATTTATTTTGTGATGA 58.859 34.615 0.00 0.00 0.00 2.92
1348 1540 7.811236 GCATGATCCGATTTATTTTGTGATGAT 59.189 33.333 0.00 0.00 0.00 2.45
1349 1541 9.124807 CATGATCCGATTTATTTTGTGATGATG 57.875 33.333 0.00 0.00 0.00 3.07
1351 1543 8.685427 TGATCCGATTTATTTTGTGATGATGTT 58.315 29.630 0.00 0.00 0.00 2.71
1360 1554 9.791820 TTATTTTGTGATGATGTTTAGATGCAG 57.208 29.630 0.00 0.00 0.00 4.41
1366 1560 3.273434 TGATGTTTAGATGCAGCAGACC 58.727 45.455 4.07 0.00 0.00 3.85
1367 1561 1.725641 TGTTTAGATGCAGCAGACCG 58.274 50.000 4.07 0.00 0.00 4.79
1389 1583 4.711399 GGGCGGTAACTTGAGGTTTATAT 58.289 43.478 0.00 0.00 39.17 0.86
1390 1584 5.509501 CGGGCGGTAACTTGAGGTTTATATA 60.510 44.000 0.00 0.00 39.17 0.86
1391 1585 6.470278 GGGCGGTAACTTGAGGTTTATATAT 58.530 40.000 0.00 0.00 39.17 0.86
1392 1586 7.577426 CGGGCGGTAACTTGAGGTTTATATATA 60.577 40.741 0.00 0.00 39.17 0.86
1433 1627 5.335035 GGAAACCATTTTGGCATCACAATTG 60.335 40.000 3.24 3.24 42.67 2.32
1443 1639 3.699067 GCATCACAATTGCCACTACATC 58.301 45.455 5.05 0.00 33.95 3.06
1473 1672 6.438108 TCGAATCTGGGATAATACGGGAATTA 59.562 38.462 0.00 0.00 0.00 1.40
1490 1691 6.426937 CGGGAATTAAGATGAATTATGTCCGT 59.573 38.462 0.00 0.00 31.26 4.69
1497 1698 4.991056 AGATGAATTATGTCCGTGAATCCG 59.009 41.667 0.00 0.00 0.00 4.18
1536 1746 7.485810 ACTACGTGTGCATTCATATACTGTTA 58.514 34.615 0.00 0.00 0.00 2.41
1539 1749 7.210174 ACGTGTGCATTCATATACTGTTATCT 58.790 34.615 0.00 0.00 0.00 1.98
1540 1750 7.382488 ACGTGTGCATTCATATACTGTTATCTC 59.618 37.037 0.00 0.00 0.00 2.75
1546 1756 9.579768 GCATTCATATACTGTTATCTCGATTCT 57.420 33.333 0.00 0.00 0.00 2.40
2356 2790 3.680475 CGGCAGCTACCAGGTTTATTACA 60.680 47.826 3.30 0.00 0.00 2.41
2362 2796 4.443394 GCTACCAGGTTTATTACATCGTCG 59.557 45.833 0.00 0.00 0.00 5.12
2369 2803 2.009229 TATTACATCGTCGTCGTCGC 57.991 50.000 7.01 0.00 38.33 5.19
2370 2804 0.097499 ATTACATCGTCGTCGTCGCA 59.903 50.000 7.01 0.00 38.33 5.10
2371 2805 0.790495 TTACATCGTCGTCGTCGCAC 60.790 55.000 7.01 0.00 38.33 5.34
2372 2806 1.899521 TACATCGTCGTCGTCGCACA 61.900 55.000 7.01 0.00 38.33 4.57
2374 2808 3.244610 ATCGTCGTCGTCGCACACA 62.245 57.895 7.01 0.00 38.33 3.72
2404 2844 8.721478 TGAGATTAATTTGTGTCTTGTTCTAGC 58.279 33.333 0.00 0.00 0.00 3.42
2405 2845 8.854614 AGATTAATTTGTGTCTTGTTCTAGCT 57.145 30.769 0.00 0.00 0.00 3.32
2406 2846 9.944376 AGATTAATTTGTGTCTTGTTCTAGCTA 57.056 29.630 0.00 0.00 0.00 3.32
2408 2848 9.944376 ATTAATTTGTGTCTTGTTCTAGCTAGA 57.056 29.630 19.72 19.72 0.00 2.43
2409 2849 9.772973 TTAATTTGTGTCTTGTTCTAGCTAGAA 57.227 29.630 28.47 28.47 39.82 2.10
2430 2880 1.553308 CAACTAGTACTAACCGCGCC 58.447 55.000 0.00 0.00 0.00 6.53
2453 2907 2.476051 CATGGCACGCGTGAACTC 59.524 61.111 41.19 25.12 0.00 3.01
2585 3043 4.647853 TGGTACGTCAAGCATTCTATACCT 59.352 41.667 0.00 0.00 33.46 3.08
2599 3057 9.419297 GCATTCTATACCTACATATCGTTTTGA 57.581 33.333 0.00 0.00 0.00 2.69
2717 3175 1.041447 TCTTCGGTGGGCTACTAGGC 61.041 60.000 0.00 0.81 40.51 3.93
2894 3363 9.684702 TTTCCCTAATTAACTGGAGGACTATAT 57.315 33.333 0.00 0.00 0.00 0.86
2963 3436 1.078848 AGCGAGGTTCAGCATGTCC 60.079 57.895 0.00 0.00 37.40 4.02
3003 3476 9.993454 GGGTAAGTTTTCTCTAGTCTTTTCTTA 57.007 33.333 0.00 0.00 0.00 2.10
3026 3499 3.833706 GCATAATCTGCCGCTGAAC 57.166 52.632 3.87 0.00 45.66 3.18
3079 3585 5.376854 ACTTCCTCAAAAATCATCGTTGG 57.623 39.130 0.00 0.00 0.00 3.77
3112 3618 1.446792 CATCGGCGTGCTTCTGTCT 60.447 57.895 6.85 0.00 0.00 3.41
3189 3695 4.261238 CCAATTCTTCTCATGATCTGCTGC 60.261 45.833 0.00 0.00 0.00 5.25
3316 3822 1.083806 TGTGGATGTTGCTCGATCGC 61.084 55.000 11.09 0.00 0.00 4.58
3333 3844 7.015226 TCGATCGCTTTGTGATATTGAAATT 57.985 32.000 11.09 0.00 32.57 1.82
3364 3875 4.475345 AGTGGAGGCGTTCTCTTAGATAT 58.525 43.478 7.61 0.00 42.10 1.63
3365 3876 5.632118 AGTGGAGGCGTTCTCTTAGATATA 58.368 41.667 7.61 0.00 42.10 0.86
3366 3877 5.474189 AGTGGAGGCGTTCTCTTAGATATAC 59.526 44.000 7.61 0.00 42.10 1.47
3367 3878 4.454847 TGGAGGCGTTCTCTTAGATATACG 59.545 45.833 7.61 6.57 42.10 3.06
3368 3879 4.455190 GGAGGCGTTCTCTTAGATATACGT 59.545 45.833 0.00 0.00 42.10 3.57
3369 3880 5.641209 GGAGGCGTTCTCTTAGATATACGTA 59.359 44.000 0.00 0.00 42.10 3.57
3370 3881 6.315891 GGAGGCGTTCTCTTAGATATACGTAT 59.684 42.308 13.54 13.54 42.10 3.06
3423 3934 4.100529 CAATCAGCTTTATTGTTCAGCCG 58.899 43.478 9.49 0.00 33.73 5.52
3460 3971 0.963962 CATATGAATGCACCAGCCCC 59.036 55.000 0.00 0.00 41.13 5.80
3461 3972 0.538057 ATATGAATGCACCAGCCCCG 60.538 55.000 0.00 0.00 41.13 5.73
3462 3973 1.631071 TATGAATGCACCAGCCCCGA 61.631 55.000 0.00 0.00 41.13 5.14
3463 3974 2.825836 GAATGCACCAGCCCCGAG 60.826 66.667 0.00 0.00 41.13 4.63
3473 3984 4.414732 GCCCCGAGCGTTAGTTAG 57.585 61.111 0.00 0.00 0.00 2.34
3474 3985 1.227176 GCCCCGAGCGTTAGTTAGG 60.227 63.158 0.00 0.00 0.00 2.69
3475 3986 1.953231 GCCCCGAGCGTTAGTTAGGT 61.953 60.000 0.00 0.00 0.00 3.08
3476 3987 0.179119 CCCCGAGCGTTAGTTAGGTG 60.179 60.000 0.00 0.00 0.00 4.00
3477 3988 0.529378 CCCGAGCGTTAGTTAGGTGT 59.471 55.000 0.00 0.00 0.00 4.16
3478 3989 1.468736 CCCGAGCGTTAGTTAGGTGTC 60.469 57.143 0.00 0.00 0.00 3.67
3479 3990 1.200716 CCGAGCGTTAGTTAGGTGTCA 59.799 52.381 0.00 0.00 0.00 3.58
3480 3991 2.248487 CGAGCGTTAGTTAGGTGTCAC 58.752 52.381 0.00 0.00 0.00 3.67
3481 3992 2.351060 CGAGCGTTAGTTAGGTGTCACA 60.351 50.000 5.12 0.00 0.00 3.58
3482 3993 3.645884 GAGCGTTAGTTAGGTGTCACAA 58.354 45.455 5.12 0.00 0.00 3.33
3483 3994 3.650139 AGCGTTAGTTAGGTGTCACAAG 58.350 45.455 5.12 0.00 0.00 3.16
3484 3995 2.735134 GCGTTAGTTAGGTGTCACAAGG 59.265 50.000 5.12 0.00 0.00 3.61
3485 3996 3.801293 GCGTTAGTTAGGTGTCACAAGGT 60.801 47.826 5.12 0.00 0.00 3.50
3486 3997 4.559300 GCGTTAGTTAGGTGTCACAAGGTA 60.559 45.833 5.12 0.00 0.00 3.08
3487 3998 5.531634 CGTTAGTTAGGTGTCACAAGGTAA 58.468 41.667 5.12 0.00 0.00 2.85
3488 3999 5.632347 CGTTAGTTAGGTGTCACAAGGTAAG 59.368 44.000 5.12 0.00 0.00 2.34
3489 4000 6.515531 CGTTAGTTAGGTGTCACAAGGTAAGA 60.516 42.308 5.12 0.00 0.00 2.10
3490 4001 5.211174 AGTTAGGTGTCACAAGGTAAGAC 57.789 43.478 5.12 0.00 0.00 3.01
3491 4002 4.652421 AGTTAGGTGTCACAAGGTAAGACA 59.348 41.667 5.12 0.00 39.74 3.41
3492 4003 5.129815 AGTTAGGTGTCACAAGGTAAGACAA 59.870 40.000 5.12 0.00 43.16 3.18
3493 4004 4.073293 AGGTGTCACAAGGTAAGACAAG 57.927 45.455 5.12 0.00 43.16 3.16
3494 4005 3.454812 AGGTGTCACAAGGTAAGACAAGT 59.545 43.478 5.12 0.00 43.16 3.16
3495 4006 4.652421 AGGTGTCACAAGGTAAGACAAGTA 59.348 41.667 5.12 0.00 43.16 2.24
3496 4007 4.748600 GGTGTCACAAGGTAAGACAAGTAC 59.251 45.833 5.12 0.00 43.16 2.73
3497 4008 5.452917 GGTGTCACAAGGTAAGACAAGTACT 60.453 44.000 5.12 0.00 43.16 2.73
3498 4009 6.239120 GGTGTCACAAGGTAAGACAAGTACTA 60.239 42.308 5.12 0.00 43.16 1.82
3499 4010 6.640092 GTGTCACAAGGTAAGACAAGTACTAC 59.360 42.308 0.00 0.00 43.16 2.73
3500 4011 6.321945 TGTCACAAGGTAAGACAAGTACTACA 59.678 38.462 0.00 0.00 39.15 2.74
3501 4012 7.147863 TGTCACAAGGTAAGACAAGTACTACAA 60.148 37.037 0.00 0.00 39.15 2.41
3502 4013 7.871463 GTCACAAGGTAAGACAAGTACTACAAT 59.129 37.037 0.00 0.00 32.68 2.71
3503 4014 8.086522 TCACAAGGTAAGACAAGTACTACAATC 58.913 37.037 0.00 0.00 0.00 2.67
3504 4015 7.870954 CACAAGGTAAGACAAGTACTACAATCA 59.129 37.037 0.00 0.00 0.00 2.57
3505 4016 8.426489 ACAAGGTAAGACAAGTACTACAATCAA 58.574 33.333 0.00 0.00 0.00 2.57
3506 4017 8.926710 CAAGGTAAGACAAGTACTACAATCAAG 58.073 37.037 0.00 0.00 0.00 3.02
3507 4018 7.097834 AGGTAAGACAAGTACTACAATCAAGC 58.902 38.462 0.00 0.00 0.00 4.01
3508 4019 7.038941 AGGTAAGACAAGTACTACAATCAAGCT 60.039 37.037 0.00 0.00 0.00 3.74
3509 4020 7.603024 GGTAAGACAAGTACTACAATCAAGCTT 59.397 37.037 0.00 0.00 0.00 3.74
3510 4021 7.426929 AAGACAAGTACTACAATCAAGCTTG 57.573 36.000 20.81 20.81 38.14 4.01
3511 4022 5.934625 AGACAAGTACTACAATCAAGCTTGG 59.065 40.000 25.73 12.70 36.96 3.61
3512 4023 5.621193 ACAAGTACTACAATCAAGCTTGGT 58.379 37.500 25.73 17.40 36.96 3.67
3513 4024 6.062095 ACAAGTACTACAATCAAGCTTGGTT 58.938 36.000 25.73 22.65 36.96 3.67
3518 4029 2.443887 CAATCAAGCTTGGTTGGGTG 57.556 50.000 35.06 17.68 43.72 4.61
3519 4030 1.688197 CAATCAAGCTTGGTTGGGTGT 59.312 47.619 35.06 8.91 43.72 4.16
3520 4031 1.331214 ATCAAGCTTGGTTGGGTGTG 58.669 50.000 25.73 0.00 0.00 3.82
3521 4032 1.067916 CAAGCTTGGTTGGGTGTGC 59.932 57.895 19.14 0.00 0.00 4.57
3522 4033 1.076044 AAGCTTGGTTGGGTGTGCT 60.076 52.632 0.00 0.00 0.00 4.40
3523 4034 0.687427 AAGCTTGGTTGGGTGTGCTT 60.687 50.000 0.00 0.00 36.16 3.91
3524 4035 0.687427 AGCTTGGTTGGGTGTGCTTT 60.687 50.000 0.00 0.00 0.00 3.51
3525 4036 0.249447 GCTTGGTTGGGTGTGCTTTC 60.249 55.000 0.00 0.00 0.00 2.62
3526 4037 0.389025 CTTGGTTGGGTGTGCTTTCC 59.611 55.000 0.00 0.00 0.00 3.13
3527 4038 0.324738 TTGGTTGGGTGTGCTTTCCA 60.325 50.000 0.00 0.00 0.00 3.53
3528 4039 0.324738 TGGTTGGGTGTGCTTTCCAA 60.325 50.000 0.00 0.00 38.13 3.53
3529 4040 1.047801 GGTTGGGTGTGCTTTCCAAT 58.952 50.000 0.00 0.00 41.80 3.16
3530 4041 2.243810 GGTTGGGTGTGCTTTCCAATA 58.756 47.619 0.00 0.00 41.80 1.90
3531 4042 2.231235 GGTTGGGTGTGCTTTCCAATAG 59.769 50.000 0.00 0.00 41.80 1.73
3532 4043 3.153919 GTTGGGTGTGCTTTCCAATAGA 58.846 45.455 0.00 0.00 41.80 1.98
3533 4044 3.517296 TGGGTGTGCTTTCCAATAGAA 57.483 42.857 0.00 0.00 0.00 2.10
3534 4045 3.420893 TGGGTGTGCTTTCCAATAGAAG 58.579 45.455 0.00 0.00 35.40 2.85
3535 4046 3.181434 TGGGTGTGCTTTCCAATAGAAGT 60.181 43.478 0.00 0.00 35.40 3.01
3536 4047 4.042311 TGGGTGTGCTTTCCAATAGAAGTA 59.958 41.667 0.00 0.00 35.40 2.24
3537 4048 5.193679 GGGTGTGCTTTCCAATAGAAGTAT 58.806 41.667 0.00 0.00 35.40 2.12
3538 4049 5.297029 GGGTGTGCTTTCCAATAGAAGTATC 59.703 44.000 0.00 0.00 35.40 2.24
3539 4050 5.880332 GGTGTGCTTTCCAATAGAAGTATCA 59.120 40.000 0.00 0.00 35.40 2.15
3540 4051 6.183360 GGTGTGCTTTCCAATAGAAGTATCAC 60.183 42.308 0.00 0.00 35.40 3.06
3541 4052 5.580691 TGTGCTTTCCAATAGAAGTATCACG 59.419 40.000 0.00 0.00 35.40 4.35
3542 4053 5.006746 GTGCTTTCCAATAGAAGTATCACGG 59.993 44.000 0.00 0.00 35.40 4.94
3543 4054 5.105106 TGCTTTCCAATAGAAGTATCACGGA 60.105 40.000 0.00 0.00 35.40 4.69
3544 4055 5.463724 GCTTTCCAATAGAAGTATCACGGAG 59.536 44.000 0.00 0.00 35.40 4.63
3545 4056 6.540438 TTTCCAATAGAAGTATCACGGAGT 57.460 37.500 0.00 0.00 37.10 3.85
3563 4074 7.611213 ACGGAGTGTAGGAAATAAGAAAATG 57.389 36.000 0.00 0.00 42.51 2.32
3564 4075 7.166167 ACGGAGTGTAGGAAATAAGAAAATGT 58.834 34.615 0.00 0.00 42.51 2.71
3565 4076 7.119262 ACGGAGTGTAGGAAATAAGAAAATGTG 59.881 37.037 0.00 0.00 42.51 3.21
3566 4077 7.333423 CGGAGTGTAGGAAATAAGAAAATGTGA 59.667 37.037 0.00 0.00 0.00 3.58
3567 4078 8.451748 GGAGTGTAGGAAATAAGAAAATGTGAC 58.548 37.037 0.00 0.00 0.00 3.67
3568 4079 8.918202 AGTGTAGGAAATAAGAAAATGTGACA 57.082 30.769 0.00 0.00 0.00 3.58
3569 4080 9.520515 AGTGTAGGAAATAAGAAAATGTGACAT 57.479 29.630 0.00 0.00 0.00 3.06
3693 4205 0.601576 CGTGAACATGGTGTCCGGAA 60.602 55.000 5.23 0.00 0.00 4.30
3713 4225 5.049129 CGGAACAGAAAGAAAAGAGATGCTT 60.049 40.000 0.00 0.00 38.88 3.91
3865 4385 0.596577 CAAGAAGGAGGACGACGTCA 59.403 55.000 27.77 0.00 33.68 4.35
4099 4620 2.805353 CAACGCTGGTCGGAGTCG 60.805 66.667 0.00 0.00 43.86 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
200 201 9.516546 ACCTTCTCTTTATTTCTCGGTTTATTT 57.483 29.630 0.00 0.00 0.00 1.40
204 205 8.913487 TTTACCTTCTCTTTATTTCTCGGTTT 57.087 30.769 0.00 0.00 0.00 3.27
205 206 8.373220 TCTTTACCTTCTCTTTATTTCTCGGTT 58.627 33.333 0.00 0.00 0.00 4.44
206 207 7.818446 GTCTTTACCTTCTCTTTATTTCTCGGT 59.182 37.037 0.00 0.00 0.00 4.69
207 208 8.035984 AGTCTTTACCTTCTCTTTATTTCTCGG 58.964 37.037 0.00 0.00 0.00 4.63
208 209 8.989653 AGTCTTTACCTTCTCTTTATTTCTCG 57.010 34.615 0.00 0.00 0.00 4.04
266 267 6.249035 TCTGTCAGTTTTCGTTGTCTTTTT 57.751 33.333 0.00 0.00 0.00 1.94
267 268 5.873179 TCTGTCAGTTTTCGTTGTCTTTT 57.127 34.783 0.00 0.00 0.00 2.27
268 269 7.548196 TTATCTGTCAGTTTTCGTTGTCTTT 57.452 32.000 0.00 0.00 0.00 2.52
269 270 7.548196 TTTATCTGTCAGTTTTCGTTGTCTT 57.452 32.000 0.00 0.00 0.00 3.01
270 271 7.548196 TTTTATCTGTCAGTTTTCGTTGTCT 57.452 32.000 0.00 0.00 0.00 3.41
297 298 4.918810 TCTTTTGGTTTCTCTTTGCCTC 57.081 40.909 0.00 0.00 0.00 4.70
299 300 4.119862 GGTTCTTTTGGTTTCTCTTTGCC 58.880 43.478 0.00 0.00 0.00 4.52
329 330 1.154413 CAGCGCGCAGACGATTTTT 60.154 52.632 35.10 4.83 43.93 1.94
384 388 1.221466 CTGCCACATATACCACGGCG 61.221 60.000 4.80 4.80 46.02 6.46
386 390 2.839486 ATCTGCCACATATACCACGG 57.161 50.000 0.00 0.00 0.00 4.94
396 400 1.210234 CCACATCCACTATCTGCCACA 59.790 52.381 0.00 0.00 0.00 4.17
400 404 3.004106 GCAAATCCACATCCACTATCTGC 59.996 47.826 0.00 0.00 0.00 4.26
401 405 4.458397 AGCAAATCCACATCCACTATCTG 58.542 43.478 0.00 0.00 0.00 2.90
406 410 2.821969 GTTGAGCAAATCCACATCCACT 59.178 45.455 0.00 0.00 0.00 4.00
430 434 6.636454 TCCATCTACATCCACTACCTTTTT 57.364 37.500 0.00 0.00 0.00 1.94
431 435 6.636454 TTCCATCTACATCCACTACCTTTT 57.364 37.500 0.00 0.00 0.00 2.27
432 436 6.636454 TTTCCATCTACATCCACTACCTTT 57.364 37.500 0.00 0.00 0.00 3.11
433 437 6.636454 TTTTCCATCTACATCCACTACCTT 57.364 37.500 0.00 0.00 0.00 3.50
434 438 6.386927 TCATTTTCCATCTACATCCACTACCT 59.613 38.462 0.00 0.00 0.00 3.08
435 439 6.591935 TCATTTTCCATCTACATCCACTACC 58.408 40.000 0.00 0.00 0.00 3.18
436 440 8.506168 TTTCATTTTCCATCTACATCCACTAC 57.494 34.615 0.00 0.00 0.00 2.73
437 441 9.177608 CTTTTCATTTTCCATCTACATCCACTA 57.822 33.333 0.00 0.00 0.00 2.74
438 442 7.123247 CCTTTTCATTTTCCATCTACATCCACT 59.877 37.037 0.00 0.00 0.00 4.00
439 443 7.122650 TCCTTTTCATTTTCCATCTACATCCAC 59.877 37.037 0.00 0.00 0.00 4.02
440 444 7.181361 TCCTTTTCATTTTCCATCTACATCCA 58.819 34.615 0.00 0.00 0.00 3.41
441 445 7.645058 TCCTTTTCATTTTCCATCTACATCC 57.355 36.000 0.00 0.00 0.00 3.51
442 446 8.906867 TCATCCTTTTCATTTTCCATCTACATC 58.093 33.333 0.00 0.00 0.00 3.06
443 447 8.827832 TCATCCTTTTCATTTTCCATCTACAT 57.172 30.769 0.00 0.00 0.00 2.29
444 448 8.648698 TTCATCCTTTTCATTTTCCATCTACA 57.351 30.769 0.00 0.00 0.00 2.74
445 449 8.960591 TCTTCATCCTTTTCATTTTCCATCTAC 58.039 33.333 0.00 0.00 0.00 2.59
446 450 9.182214 CTCTTCATCCTTTTCATTTTCCATCTA 57.818 33.333 0.00 0.00 0.00 1.98
447 451 7.673082 ACTCTTCATCCTTTTCATTTTCCATCT 59.327 33.333 0.00 0.00 0.00 2.90
512 519 7.272244 TCATGTTGAACGTATACCAGATCAAT 58.728 34.615 0.00 0.00 33.08 2.57
552 559 7.388224 TGCATGTTTAGCATCAATCATGTTTTT 59.612 29.630 13.64 0.00 37.68 1.94
553 560 6.874664 TGCATGTTTAGCATCAATCATGTTTT 59.125 30.769 13.64 0.00 37.68 2.43
554 561 6.399743 TGCATGTTTAGCATCAATCATGTTT 58.600 32.000 13.64 0.00 37.68 2.83
555 562 5.968254 TGCATGTTTAGCATCAATCATGTT 58.032 33.333 13.64 0.00 37.68 2.71
556 563 5.585820 TGCATGTTTAGCATCAATCATGT 57.414 34.783 13.64 0.00 37.68 3.21
557 564 5.051973 CGTTGCATGTTTAGCATCAATCATG 60.052 40.000 0.00 10.23 42.33 3.07
558 565 5.038683 CGTTGCATGTTTAGCATCAATCAT 58.961 37.500 0.00 0.00 42.33 2.45
559 566 4.082841 ACGTTGCATGTTTAGCATCAATCA 60.083 37.500 0.00 0.00 42.33 2.57
561 568 4.414852 GACGTTGCATGTTTAGCATCAAT 58.585 39.130 0.00 0.00 42.33 2.57
563 570 2.159720 CGACGTTGCATGTTTAGCATCA 60.160 45.455 0.00 0.00 42.33 3.07
567 574 0.515564 ACCGACGTTGCATGTTTAGC 59.484 50.000 0.00 0.00 0.00 3.09
568 575 2.961522 AACCGACGTTGCATGTTTAG 57.038 45.000 0.00 0.00 0.00 1.85
569 576 2.355132 ACAAACCGACGTTGCATGTTTA 59.645 40.909 7.93 0.00 30.72 2.01
570 577 1.133407 ACAAACCGACGTTGCATGTTT 59.867 42.857 0.00 0.07 30.72 2.83
571 578 0.736053 ACAAACCGACGTTGCATGTT 59.264 45.000 0.00 0.00 30.72 2.71
572 579 0.736053 AACAAACCGACGTTGCATGT 59.264 45.000 0.00 0.00 30.72 3.21
573 580 2.672188 TAACAAACCGACGTTGCATG 57.328 45.000 0.00 0.00 30.72 4.06
574 581 3.181528 CGTATAACAAACCGACGTTGCAT 60.182 43.478 0.00 0.00 30.72 3.96
575 582 2.155347 CGTATAACAAACCGACGTTGCA 59.845 45.455 0.00 0.00 30.72 4.08
576 583 2.472723 CCGTATAACAAACCGACGTTGC 60.473 50.000 0.00 0.00 30.72 4.17
578 585 1.726248 GCCGTATAACAAACCGACGTT 59.274 47.619 0.00 0.00 0.00 3.99
579 586 1.349234 GCCGTATAACAAACCGACGT 58.651 50.000 0.00 0.00 0.00 4.34
588 670 1.611977 CAGATCCTCCGCCGTATAACA 59.388 52.381 0.00 0.00 0.00 2.41
607 689 1.550327 TTTATTTGGACGGGCATGCA 58.450 45.000 21.36 0.00 0.00 3.96
610 692 5.923733 TGTTTATTTATTTGGACGGGCAT 57.076 34.783 0.00 0.00 0.00 4.40
611 693 5.723672 TTGTTTATTTATTTGGACGGGCA 57.276 34.783 0.00 0.00 0.00 5.36
614 696 6.415573 GCCGTATTGTTTATTTATTTGGACGG 59.584 38.462 0.00 0.00 45.81 4.79
615 697 6.139482 CGCCGTATTGTTTATTTATTTGGACG 59.861 38.462 0.00 0.00 0.00 4.79
616 698 6.415573 CCGCCGTATTGTTTATTTATTTGGAC 59.584 38.462 0.00 0.00 0.00 4.02
617 699 6.318144 TCCGCCGTATTGTTTATTTATTTGGA 59.682 34.615 0.00 0.00 0.00 3.53
618 700 6.496571 TCCGCCGTATTGTTTATTTATTTGG 58.503 36.000 0.00 0.00 0.00 3.28
620 702 6.543100 TCCTCCGCCGTATTGTTTATTTATTT 59.457 34.615 0.00 0.00 0.00 1.40
621 703 6.056884 TCCTCCGCCGTATTGTTTATTTATT 58.943 36.000 0.00 0.00 0.00 1.40
624 706 3.876341 TCCTCCGCCGTATTGTTTATTT 58.124 40.909 0.00 0.00 0.00 1.40
625 707 3.547054 TCCTCCGCCGTATTGTTTATT 57.453 42.857 0.00 0.00 0.00 1.40
627 709 2.696707 AGATCCTCCGCCGTATTGTTTA 59.303 45.455 0.00 0.00 0.00 2.01
628 710 1.485066 AGATCCTCCGCCGTATTGTTT 59.515 47.619 0.00 0.00 0.00 2.83
629 711 1.120530 AGATCCTCCGCCGTATTGTT 58.879 50.000 0.00 0.00 0.00 2.83
630 712 1.120530 AAGATCCTCCGCCGTATTGT 58.879 50.000 0.00 0.00 0.00 2.71
631 713 2.240493 AAAGATCCTCCGCCGTATTG 57.760 50.000 0.00 0.00 0.00 1.90
632 714 2.802057 CGAAAAGATCCTCCGCCGTATT 60.802 50.000 0.00 0.00 0.00 1.89
633 715 1.269621 CGAAAAGATCCTCCGCCGTAT 60.270 52.381 0.00 0.00 0.00 3.06
634 716 0.101759 CGAAAAGATCCTCCGCCGTA 59.898 55.000 0.00 0.00 0.00 4.02
635 717 1.153628 CGAAAAGATCCTCCGCCGT 60.154 57.895 0.00 0.00 0.00 5.68
636 718 0.739813 AACGAAAAGATCCTCCGCCG 60.740 55.000 0.00 0.00 0.00 6.46
637 719 1.007580 GAACGAAAAGATCCTCCGCC 58.992 55.000 0.00 0.00 0.00 6.13
638 720 1.007580 GGAACGAAAAGATCCTCCGC 58.992 55.000 0.00 0.00 38.62 5.54
671 753 4.593864 GCACCTCCTCGGCCGATC 62.594 72.222 31.19 8.11 35.61 3.69
690 780 2.126228 CAACCGCTTGCATGCAGG 60.126 61.111 24.39 24.39 34.52 4.85
815 910 1.789576 ATATGGGATCCCGTTGGCCC 61.790 60.000 30.65 2.43 41.08 5.80
818 948 4.389374 GCATATATATGGGATCCCGTTGG 58.611 47.826 30.65 14.20 39.42 3.77
819 949 4.058124 CGCATATATATGGGATCCCGTTG 58.942 47.826 30.65 21.86 46.05 4.10
868 1000 3.623466 TCCCGAGGGAATGAACCTATA 57.377 47.619 8.71 0.00 42.05 1.31
869 1001 2.489528 TCCCGAGGGAATGAACCTAT 57.510 50.000 8.71 0.00 42.05 2.57
924 1056 1.209990 TCGAGGTACCTCAGAGGAGAC 59.790 57.143 35.32 18.61 44.26 3.36
1039 1186 2.163390 CGTCGATGTCCTGCAGCTG 61.163 63.158 10.11 10.11 0.00 4.24
1192 1339 1.063183 AGGCAAGCAGAAGAGAGGTT 58.937 50.000 0.00 0.00 0.00 3.50
1194 1341 1.470632 CGTAGGCAAGCAGAAGAGAGG 60.471 57.143 0.00 0.00 0.00 3.69
1195 1342 1.474478 TCGTAGGCAAGCAGAAGAGAG 59.526 52.381 0.00 0.00 0.00 3.20
1196 1343 1.545841 TCGTAGGCAAGCAGAAGAGA 58.454 50.000 0.00 0.00 0.00 3.10
1197 1344 2.159184 TGATCGTAGGCAAGCAGAAGAG 60.159 50.000 0.00 0.00 0.00 2.85
1198 1345 1.824852 TGATCGTAGGCAAGCAGAAGA 59.175 47.619 0.00 0.00 0.00 2.87
1201 1380 1.474330 TCTGATCGTAGGCAAGCAGA 58.526 50.000 0.00 0.00 0.00 4.26
1210 1389 4.149571 CAGCGAAATCCAATCTGATCGTAG 59.850 45.833 0.00 0.00 0.00 3.51
1232 1411 0.892358 AGTGAACGTACGAGGAGGCA 60.892 55.000 24.41 7.27 0.00 4.75
1267 1455 8.288208 CGAGGTACGCTAATAATCTAGAAAAGA 58.712 37.037 0.00 0.00 35.10 2.52
1312 1504 1.280746 GGATCATGCATGAACGCCG 59.719 57.895 31.79 2.25 40.69 6.46
1313 1505 1.159713 TCGGATCATGCATGAACGCC 61.160 55.000 34.02 29.70 40.69 5.68
1314 1506 0.870393 ATCGGATCATGCATGAACGC 59.130 50.000 34.02 25.40 40.69 4.84
1315 1507 3.614159 AAATCGGATCATGCATGAACG 57.386 42.857 33.50 33.50 40.69 3.95
1316 1508 7.436080 ACAAAATAAATCGGATCATGCATGAAC 59.564 33.333 31.79 27.90 40.69 3.18
1317 1509 7.435784 CACAAAATAAATCGGATCATGCATGAA 59.564 33.333 31.79 16.85 40.69 2.57
1318 1510 6.919115 CACAAAATAAATCGGATCATGCATGA 59.081 34.615 30.47 30.47 41.70 3.07
1319 1511 6.919115 TCACAAAATAAATCGGATCATGCATG 59.081 34.615 21.07 21.07 0.00 4.06
1320 1512 7.041635 TCACAAAATAAATCGGATCATGCAT 57.958 32.000 0.00 0.00 0.00 3.96
1321 1513 6.448207 TCACAAAATAAATCGGATCATGCA 57.552 33.333 0.00 0.00 0.00 3.96
1322 1514 7.140705 TCATCACAAAATAAATCGGATCATGC 58.859 34.615 0.00 0.00 0.00 4.06
1343 1535 4.024218 GGTCTGCTGCATCTAAACATCATC 60.024 45.833 1.31 0.00 0.00 2.92
1347 1539 2.283298 CGGTCTGCTGCATCTAAACAT 58.717 47.619 1.31 0.00 0.00 2.71
1348 1540 1.675714 CCGGTCTGCTGCATCTAAACA 60.676 52.381 1.31 0.00 0.00 2.83
1349 1541 1.009829 CCGGTCTGCTGCATCTAAAC 58.990 55.000 1.31 0.00 0.00 2.01
1351 1543 1.522092 CCCGGTCTGCTGCATCTAA 59.478 57.895 1.31 0.00 0.00 2.10
1366 1560 0.604511 AAACCTCAAGTTACCGCCCG 60.605 55.000 0.00 0.00 37.88 6.13
1367 1561 2.477845 TAAACCTCAAGTTACCGCCC 57.522 50.000 0.00 0.00 37.88 6.13
1389 1583 7.610305 GGTTTCCAATCTGAAAACCTCACTATA 59.390 37.037 12.36 0.00 36.21 1.31
1390 1584 6.434340 GGTTTCCAATCTGAAAACCTCACTAT 59.566 38.462 12.36 0.00 36.21 2.12
1391 1585 5.768164 GGTTTCCAATCTGAAAACCTCACTA 59.232 40.000 12.36 0.00 36.21 2.74
1392 1586 4.584743 GGTTTCCAATCTGAAAACCTCACT 59.415 41.667 12.36 0.00 36.21 3.41
1433 1627 5.504665 CCAGATTCGAAAATGATGTAGTGGC 60.505 44.000 0.00 0.00 0.00 5.01
1443 1639 6.128282 CCCGTATTATCCCAGATTCGAAAATG 60.128 42.308 0.00 3.84 0.00 2.32
1473 1672 5.466728 CGGATTCACGGACATAATTCATCTT 59.533 40.000 0.00 0.00 0.00 2.40
1536 1746 2.840651 ACCCCTGAAACAGAATCGAGAT 59.159 45.455 0.00 0.00 32.44 2.75
1539 1749 1.278127 GGACCCCTGAAACAGAATCGA 59.722 52.381 0.00 0.00 32.44 3.59
1540 1750 1.279271 AGGACCCCTGAAACAGAATCG 59.721 52.381 0.00 0.00 32.44 3.34
2001 2435 1.067846 GTCATGCTGTAGTCGACCACA 60.068 52.381 15.97 15.97 0.00 4.17
2139 2573 0.036858 GCTTCTTGGACGGCTTCTCT 60.037 55.000 0.00 0.00 0.00 3.10
2356 2790 2.501222 GTGTGCGACGACGACGAT 60.501 61.111 22.94 0.00 42.66 3.73
2362 2796 0.710567 CTCAGAATGTGTGCGACGAC 59.289 55.000 0.00 0.00 37.40 4.34
2371 2805 9.338291 CAAGACACAAATTAATCTCAGAATGTG 57.662 33.333 0.00 0.00 41.86 3.21
2372 2806 9.071276 ACAAGACACAAATTAATCTCAGAATGT 57.929 29.630 0.00 0.00 37.40 2.71
2403 2843 5.576895 CGGTTAGTACTAGTTGGTTCTAGC 58.423 45.833 0.00 0.00 40.50 3.42
2404 2844 5.576895 GCGGTTAGTACTAGTTGGTTCTAG 58.423 45.833 0.00 0.00 41.99 2.43
2405 2845 4.094887 CGCGGTTAGTACTAGTTGGTTCTA 59.905 45.833 0.00 0.00 0.00 2.10
2406 2846 3.119708 CGCGGTTAGTACTAGTTGGTTCT 60.120 47.826 0.00 0.00 0.00 3.01
2407 2847 3.174375 CGCGGTTAGTACTAGTTGGTTC 58.826 50.000 0.00 0.00 0.00 3.62
2408 2848 2.672195 GCGCGGTTAGTACTAGTTGGTT 60.672 50.000 8.83 0.00 0.00 3.67
2409 2849 1.135286 GCGCGGTTAGTACTAGTTGGT 60.135 52.381 8.83 0.00 0.00 3.67
2410 2850 1.553308 GCGCGGTTAGTACTAGTTGG 58.447 55.000 8.83 0.00 0.00 3.77
2411 2851 1.133790 AGGCGCGGTTAGTACTAGTTG 59.866 52.381 8.83 0.00 0.00 3.16
2412 2852 1.467920 AGGCGCGGTTAGTACTAGTT 58.532 50.000 8.83 0.00 0.00 2.24
2414 2854 1.133790 ACAAGGCGCGGTTAGTACTAG 59.866 52.381 8.83 0.00 0.00 2.57
2415 2855 1.135315 CACAAGGCGCGGTTAGTACTA 60.135 52.381 8.83 0.00 0.00 1.82
2416 2856 0.389426 CACAAGGCGCGGTTAGTACT 60.389 55.000 8.83 0.00 0.00 2.73
2417 2857 1.963190 GCACAAGGCGCGGTTAGTAC 61.963 60.000 8.83 0.00 0.00 2.73
2511 2965 1.076014 CCACCCGGGCTTAAACCTT 59.924 57.895 24.08 0.00 0.00 3.50
2717 3175 4.496175 GCAAATGCAAAACCACCAAAGAAG 60.496 41.667 0.00 0.00 41.59 2.85
2766 3224 8.653036 AAGAAGTAGAGAGAAAAGCTTAGGTA 57.347 34.615 0.00 0.00 0.00 3.08
2851 3316 3.006430 GGGAAACAAACGGGTTCATCATT 59.994 43.478 0.00 0.00 0.00 2.57
2862 3327 6.349033 CCTCCAGTTAATTAGGGAAACAAACG 60.349 42.308 4.72 0.00 0.00 3.60
2894 3363 5.734720 CAGGGAAGCTGTATACAAAGAAGA 58.265 41.667 7.06 0.00 0.00 2.87
2963 3436 2.086869 CTTACCCAGTTGATGCACCAG 58.913 52.381 0.00 0.00 0.00 4.00
3364 3875 7.252708 ACGAACTGACATTTCACATATACGTA 58.747 34.615 0.00 0.00 0.00 3.57
3365 3876 6.097356 ACGAACTGACATTTCACATATACGT 58.903 36.000 6.38 0.00 0.00 3.57
3366 3877 6.569228 ACGAACTGACATTTCACATATACG 57.431 37.500 6.38 0.00 0.00 3.06
3367 3878 8.110612 CAGAACGAACTGACATTTCACATATAC 58.889 37.037 6.38 0.00 39.94 1.47
3368 3879 8.032451 TCAGAACGAACTGACATTTCACATATA 58.968 33.333 10.93 0.00 41.21 0.86
3369 3880 6.873605 TCAGAACGAACTGACATTTCACATAT 59.126 34.615 10.93 0.00 41.21 1.78
3370 3881 6.220201 TCAGAACGAACTGACATTTCACATA 58.780 36.000 10.93 0.00 41.21 2.29
3423 3934 0.463654 TGCATCAACATACTCCGGCC 60.464 55.000 0.00 0.00 0.00 6.13
3458 3969 0.529378 ACACCTAACTAACGCTCGGG 59.471 55.000 0.00 0.00 0.00 5.14
3459 3970 1.200716 TGACACCTAACTAACGCTCGG 59.799 52.381 0.00 0.00 0.00 4.63
3460 3971 2.248487 GTGACACCTAACTAACGCTCG 58.752 52.381 0.00 0.00 0.00 5.03
3461 3972 3.293311 TGTGACACCTAACTAACGCTC 57.707 47.619 2.45 0.00 0.00 5.03
3462 3973 3.554337 CCTTGTGACACCTAACTAACGCT 60.554 47.826 2.45 0.00 0.00 5.07
3463 3974 2.735134 CCTTGTGACACCTAACTAACGC 59.265 50.000 2.45 0.00 0.00 4.84
3464 3975 3.986277 ACCTTGTGACACCTAACTAACG 58.014 45.455 2.45 0.00 0.00 3.18
3465 3976 6.644181 GTCTTACCTTGTGACACCTAACTAAC 59.356 42.308 2.45 0.00 0.00 2.34
3466 3977 6.324512 TGTCTTACCTTGTGACACCTAACTAA 59.675 38.462 2.45 0.00 36.03 2.24
3467 3978 5.834742 TGTCTTACCTTGTGACACCTAACTA 59.165 40.000 2.45 0.00 36.03 2.24
3468 3979 4.652421 TGTCTTACCTTGTGACACCTAACT 59.348 41.667 2.45 0.00 36.03 2.24
3469 3980 4.952460 TGTCTTACCTTGTGACACCTAAC 58.048 43.478 2.45 0.00 36.03 2.34
3470 3981 5.129815 ACTTGTCTTACCTTGTGACACCTAA 59.870 40.000 2.45 0.00 39.95 2.69
3471 3982 4.652421 ACTTGTCTTACCTTGTGACACCTA 59.348 41.667 2.45 0.00 39.95 3.08
3472 3983 3.454812 ACTTGTCTTACCTTGTGACACCT 59.545 43.478 2.45 0.00 39.95 4.00
3473 3984 3.805207 ACTTGTCTTACCTTGTGACACC 58.195 45.455 2.45 0.00 39.95 4.16
3474 3985 5.598769 AGTACTTGTCTTACCTTGTGACAC 58.401 41.667 0.00 0.00 39.95 3.67
3475 3986 5.864418 AGTACTTGTCTTACCTTGTGACA 57.136 39.130 0.00 0.00 38.71 3.58
3476 3987 6.742109 TGTAGTACTTGTCTTACCTTGTGAC 58.258 40.000 0.00 0.00 0.00 3.67
3477 3988 6.964807 TGTAGTACTTGTCTTACCTTGTGA 57.035 37.500 0.00 0.00 0.00 3.58
3478 3989 7.870954 TGATTGTAGTACTTGTCTTACCTTGTG 59.129 37.037 0.00 0.00 0.00 3.33
3479 3990 7.959175 TGATTGTAGTACTTGTCTTACCTTGT 58.041 34.615 0.00 0.00 0.00 3.16
3480 3991 8.827177 TTGATTGTAGTACTTGTCTTACCTTG 57.173 34.615 0.00 0.00 0.00 3.61
3481 3992 7.603024 GCTTGATTGTAGTACTTGTCTTACCTT 59.397 37.037 0.00 0.00 0.00 3.50
3482 3993 7.038941 AGCTTGATTGTAGTACTTGTCTTACCT 60.039 37.037 0.00 0.00 0.00 3.08
3483 3994 7.097834 AGCTTGATTGTAGTACTTGTCTTACC 58.902 38.462 0.00 0.00 0.00 2.85
3484 3995 8.436200 CAAGCTTGATTGTAGTACTTGTCTTAC 58.564 37.037 22.31 0.00 0.00 2.34
3485 3996 7.602644 CCAAGCTTGATTGTAGTACTTGTCTTA 59.397 37.037 28.05 0.00 33.00 2.10
3486 3997 6.428159 CCAAGCTTGATTGTAGTACTTGTCTT 59.572 38.462 28.05 0.00 33.00 3.01
3487 3998 5.934625 CCAAGCTTGATTGTAGTACTTGTCT 59.065 40.000 28.05 0.00 33.00 3.41
3488 3999 5.701290 ACCAAGCTTGATTGTAGTACTTGTC 59.299 40.000 28.05 0.00 33.00 3.18
3489 4000 5.621193 ACCAAGCTTGATTGTAGTACTTGT 58.379 37.500 28.05 9.03 33.00 3.16
3490 4001 6.373779 CAACCAAGCTTGATTGTAGTACTTG 58.626 40.000 28.05 8.38 34.30 3.16
3491 4002 5.473504 CCAACCAAGCTTGATTGTAGTACTT 59.526 40.000 27.90 1.27 0.00 2.24
3492 4003 5.003804 CCAACCAAGCTTGATTGTAGTACT 58.996 41.667 27.90 0.00 0.00 2.73
3493 4004 4.156008 CCCAACCAAGCTTGATTGTAGTAC 59.844 45.833 27.90 0.00 0.00 2.73
3494 4005 4.202524 ACCCAACCAAGCTTGATTGTAGTA 60.203 41.667 27.90 0.00 0.00 1.82
3495 4006 3.157087 CCCAACCAAGCTTGATTGTAGT 58.843 45.455 27.90 14.15 0.00 2.73
3496 4007 3.057315 CACCCAACCAAGCTTGATTGTAG 60.057 47.826 27.90 21.52 0.00 2.74
3497 4008 2.890311 CACCCAACCAAGCTTGATTGTA 59.110 45.455 27.90 0.00 0.00 2.41
3498 4009 1.688197 CACCCAACCAAGCTTGATTGT 59.312 47.619 27.90 15.50 0.00 2.71
3499 4010 1.688197 ACACCCAACCAAGCTTGATTG 59.312 47.619 24.45 24.45 0.00 2.67
3500 4011 1.688197 CACACCCAACCAAGCTTGATT 59.312 47.619 28.05 15.18 0.00 2.57
3501 4012 1.331214 CACACCCAACCAAGCTTGAT 58.669 50.000 28.05 8.09 0.00 2.57
3502 4013 1.391157 GCACACCCAACCAAGCTTGA 61.391 55.000 28.05 0.00 0.00 3.02
3503 4014 1.067916 GCACACCCAACCAAGCTTG 59.932 57.895 19.93 19.93 0.00 4.01
3504 4015 0.687427 AAGCACACCCAACCAAGCTT 60.687 50.000 0.00 0.00 37.48 3.74
3505 4016 0.687427 AAAGCACACCCAACCAAGCT 60.687 50.000 0.00 0.00 0.00 3.74
3506 4017 0.249447 GAAAGCACACCCAACCAAGC 60.249 55.000 0.00 0.00 0.00 4.01
3507 4018 0.389025 GGAAAGCACACCCAACCAAG 59.611 55.000 0.00 0.00 0.00 3.61
3508 4019 0.324738 TGGAAAGCACACCCAACCAA 60.325 50.000 0.00 0.00 0.00 3.67
3509 4020 0.324738 TTGGAAAGCACACCCAACCA 60.325 50.000 0.00 0.00 35.25 3.67
3510 4021 1.047801 ATTGGAAAGCACACCCAACC 58.952 50.000 0.00 0.00 42.08 3.77
3511 4022 3.153919 TCTATTGGAAAGCACACCCAAC 58.846 45.455 0.00 0.00 42.08 3.77
3512 4023 3.517296 TCTATTGGAAAGCACACCCAA 57.483 42.857 0.00 0.00 43.25 4.12
3513 4024 3.181434 ACTTCTATTGGAAAGCACACCCA 60.181 43.478 0.00 0.00 33.07 4.51
3514 4025 3.421844 ACTTCTATTGGAAAGCACACCC 58.578 45.455 0.00 0.00 33.07 4.61
3515 4026 5.880332 TGATACTTCTATTGGAAAGCACACC 59.120 40.000 0.00 0.00 33.07 4.16
3516 4027 6.455646 CGTGATACTTCTATTGGAAAGCACAC 60.456 42.308 4.47 0.00 33.07 3.82
3517 4028 5.580691 CGTGATACTTCTATTGGAAAGCACA 59.419 40.000 4.47 0.00 33.07 4.57
3518 4029 5.006746 CCGTGATACTTCTATTGGAAAGCAC 59.993 44.000 0.00 0.00 33.07 4.40
3519 4030 5.105106 TCCGTGATACTTCTATTGGAAAGCA 60.105 40.000 0.00 0.00 33.07 3.91
3520 4031 5.357257 TCCGTGATACTTCTATTGGAAAGC 58.643 41.667 0.00 0.00 33.07 3.51
3521 4032 6.477033 CACTCCGTGATACTTCTATTGGAAAG 59.523 42.308 0.00 0.00 35.23 2.62
3522 4033 6.070995 ACACTCCGTGATACTTCTATTGGAAA 60.071 38.462 0.38 0.00 36.96 3.13
3523 4034 5.421056 ACACTCCGTGATACTTCTATTGGAA 59.579 40.000 0.38 0.00 36.96 3.53
3524 4035 4.954202 ACACTCCGTGATACTTCTATTGGA 59.046 41.667 0.38 0.00 36.96 3.53
3525 4036 5.263968 ACACTCCGTGATACTTCTATTGG 57.736 43.478 0.38 0.00 36.96 3.16
3526 4037 6.262496 TCCTACACTCCGTGATACTTCTATTG 59.738 42.308 0.38 0.00 36.96 1.90
3527 4038 6.363065 TCCTACACTCCGTGATACTTCTATT 58.637 40.000 0.38 0.00 36.96 1.73
3528 4039 5.938279 TCCTACACTCCGTGATACTTCTAT 58.062 41.667 0.38 0.00 36.96 1.98
3529 4040 5.363562 TCCTACACTCCGTGATACTTCTA 57.636 43.478 0.38 0.00 36.96 2.10
3530 4041 4.232188 TCCTACACTCCGTGATACTTCT 57.768 45.455 0.38 0.00 36.96 2.85
3531 4042 4.978083 TTCCTACACTCCGTGATACTTC 57.022 45.455 0.38 0.00 36.96 3.01
3532 4043 5.934402 ATTTCCTACACTCCGTGATACTT 57.066 39.130 0.38 0.00 36.96 2.24
3533 4044 6.832384 TCTTATTTCCTACACTCCGTGATACT 59.168 38.462 0.38 0.00 36.96 2.12
3534 4045 7.035840 TCTTATTTCCTACACTCCGTGATAC 57.964 40.000 0.38 0.00 36.96 2.24
3535 4046 7.649533 TTCTTATTTCCTACACTCCGTGATA 57.350 36.000 0.38 0.00 36.96 2.15
3536 4047 6.540438 TTCTTATTTCCTACACTCCGTGAT 57.460 37.500 0.38 0.00 36.96 3.06
3537 4048 5.988310 TTCTTATTTCCTACACTCCGTGA 57.012 39.130 0.38 0.00 36.96 4.35
3538 4049 7.119262 ACATTTTCTTATTTCCTACACTCCGTG 59.881 37.037 0.00 0.00 39.75 4.94
3539 4050 7.119262 CACATTTTCTTATTTCCTACACTCCGT 59.881 37.037 0.00 0.00 0.00 4.69
3540 4051 7.333423 TCACATTTTCTTATTTCCTACACTCCG 59.667 37.037 0.00 0.00 0.00 4.63
3541 4052 8.451748 GTCACATTTTCTTATTTCCTACACTCC 58.548 37.037 0.00 0.00 0.00 3.85
3542 4053 8.999431 TGTCACATTTTCTTATTTCCTACACTC 58.001 33.333 0.00 0.00 0.00 3.51
3543 4054 8.918202 TGTCACATTTTCTTATTTCCTACACT 57.082 30.769 0.00 0.00 0.00 3.55
3595 4106 3.696281 TCAATGCAATGATACGCAAGG 57.304 42.857 0.00 0.00 42.37 3.61
3693 4205 6.060788 AGTCAAGCATCTCTTTTCTTTCTGT 58.939 36.000 0.00 0.00 31.27 3.41
3713 4225 4.576873 GTGATGTATCCTCTCTTCGAGTCA 59.423 45.833 0.00 0.00 38.11 3.41
3865 4385 2.264794 GGATGGTGACGGCGTCTT 59.735 61.111 36.17 20.45 33.15 3.01
3995 4516 4.393155 TGCTCGGCTTGCCGATGT 62.393 61.111 32.45 0.00 41.47 3.06
4088 4609 2.994995 ACATGGCGACTCCGACCA 60.995 61.111 0.00 0.00 44.97 4.02
4099 4620 3.282374 AACCCCCTTCCGACATGGC 62.282 63.158 0.00 0.00 37.80 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.