Multiple sequence alignment - TraesCS7D01G156500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G156500 chr7D 100.000 3219 0 0 1 3219 104577322 104574104 0.000000e+00 5945.0
1 TraesCS7D01G156500 chr7B 94.586 2512 86 26 733 3219 62697439 62694953 0.000000e+00 3840.0
2 TraesCS7D01G156500 chr7B 87.628 881 84 16 91 968 62707507 62706649 0.000000e+00 1000.0
3 TraesCS7D01G156500 chr7B 85.847 431 45 9 519 947 62703846 62703430 8.190000e-121 444.0
4 TraesCS7D01G156500 chr7B 89.130 322 16 6 963 1278 62705606 62705298 1.810000e-102 383.0
5 TraesCS7D01G156500 chr7B 84.279 229 25 7 519 741 62701320 62701097 2.520000e-51 213.0
6 TraesCS7D01G156500 chr7B 100.000 29 0 0 439 467 361067997 361067969 2.000000e-03 54.7
7 TraesCS7D01G156500 chr7A 93.876 2286 73 27 959 3218 108818516 108816272 0.000000e+00 3384.0
8 TraesCS7D01G156500 chr7A 88.419 449 42 6 524 967 108819312 108818869 1.700000e-147 532.0
9 TraesCS7D01G156500 chr7A 87.179 234 23 3 714 947 108822073 108821847 3.190000e-65 259.0
10 TraesCS7D01G156500 chr4B 92.391 92 6 1 1 92 316412332 316412422 2.610000e-26 130.0
11 TraesCS7D01G156500 chr3B 93.750 48 3 0 380 427 779125616 779125663 4.450000e-09 73.1
12 TraesCS7D01G156500 chr1A 93.182 44 3 0 384 427 19365848 19365805 7.450000e-07 65.8
13 TraesCS7D01G156500 chr1A 93.182 44 3 0 384 427 19472297 19472254 7.450000e-07 65.8
14 TraesCS7D01G156500 chr6D 100.000 31 0 0 439 469 315510677 315510647 1.250000e-04 58.4
15 TraesCS7D01G156500 chr4D 100.000 31 0 0 439 469 489586008 489586038 1.250000e-04 58.4
16 TraesCS7D01G156500 chr3D 100.000 31 0 0 439 469 3635261 3635231 1.250000e-04 58.4
17 TraesCS7D01G156500 chr3D 100.000 31 0 0 439 469 602846619 602846589 1.250000e-04 58.4
18 TraesCS7D01G156500 chr3D 100.000 31 0 0 439 469 602848380 602848350 1.250000e-04 58.4
19 TraesCS7D01G156500 chr2B 100.000 31 0 0 439 469 357465245 357465215 1.250000e-04 58.4
20 TraesCS7D01G156500 chr1B 94.444 36 2 0 383 418 31946206 31946241 4.490000e-04 56.5
21 TraesCS7D01G156500 chr4A 96.774 31 1 0 439 469 295218937 295218907 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G156500 chr7D 104574104 104577322 3218 True 5945.000000 5945 100.000000 1 3219 1 chr7D.!!$R1 3218
1 TraesCS7D01G156500 chr7B 62694953 62707507 12554 True 1176.000000 3840 88.294000 91 3219 5 chr7B.!!$R2 3128
2 TraesCS7D01G156500 chr7A 108816272 108822073 5801 True 1391.666667 3384 89.824667 524 3218 3 chr7A.!!$R1 2694

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
40 41 0.034089 CCCCGAATCCTGCTTTTCCT 60.034 55.0 0.0 0.0 0.0 3.36 F
612 7104 0.896019 CCAATAAACGTGTGGGGGCA 60.896 55.0 0.0 0.0 0.0 5.36 F
1015 11544 1.252175 TTGCACACAACACACAACCT 58.748 45.0 0.0 0.0 0.0 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1851 12405 0.243907 GCACACGCAGAGGACTTCTA 59.756 55.0 0.00 0.0 38.36 2.10 R
1974 12528 0.332632 TCCAGGAAATCCTTGGCCTG 59.667 55.0 3.32 0.0 46.09 4.85 R
2848 13413 1.179814 GCCGACGGATATCCAGGTCT 61.180 60.0 20.50 0.0 35.14 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.123045 ACAATAGAGGGTATTTATTCCCCG 57.877 41.667 1.18 0.00 44.40 5.73
26 27 5.847817 ACAATAGAGGGTATTTATTCCCCGA 59.152 40.000 1.18 0.00 44.40 5.14
27 28 6.330778 ACAATAGAGGGTATTTATTCCCCGAA 59.669 38.462 1.18 0.00 44.40 4.30
28 29 7.018249 ACAATAGAGGGTATTTATTCCCCGAAT 59.982 37.037 1.18 0.00 44.40 3.34
29 30 5.500546 AGAGGGTATTTATTCCCCGAATC 57.499 43.478 1.18 0.00 44.40 2.52
30 31 4.288887 AGAGGGTATTTATTCCCCGAATCC 59.711 45.833 1.18 0.00 44.40 3.01
31 32 4.248652 AGGGTATTTATTCCCCGAATCCT 58.751 43.478 1.18 0.00 44.40 3.24
32 33 4.042934 AGGGTATTTATTCCCCGAATCCTG 59.957 45.833 1.18 0.00 44.40 3.86
33 34 3.756963 GGTATTTATTCCCCGAATCCTGC 59.243 47.826 0.00 0.00 33.95 4.85
34 35 3.884037 ATTTATTCCCCGAATCCTGCT 57.116 42.857 0.00 0.00 33.95 4.24
35 36 3.662759 TTTATTCCCCGAATCCTGCTT 57.337 42.857 0.00 0.00 33.95 3.91
36 37 3.662759 TTATTCCCCGAATCCTGCTTT 57.337 42.857 0.00 0.00 33.95 3.51
37 38 2.532250 ATTCCCCGAATCCTGCTTTT 57.468 45.000 0.00 0.00 0.00 2.27
38 39 1.834188 TTCCCCGAATCCTGCTTTTC 58.166 50.000 0.00 0.00 0.00 2.29
39 40 0.034477 TCCCCGAATCCTGCTTTTCC 60.034 55.000 0.00 0.00 0.00 3.13
40 41 0.034089 CCCCGAATCCTGCTTTTCCT 60.034 55.000 0.00 0.00 0.00 3.36
41 42 1.616994 CCCCGAATCCTGCTTTTCCTT 60.617 52.381 0.00 0.00 0.00 3.36
42 43 1.474077 CCCGAATCCTGCTTTTCCTTG 59.526 52.381 0.00 0.00 0.00 3.61
43 44 1.474077 CCGAATCCTGCTTTTCCTTGG 59.526 52.381 0.00 0.00 0.00 3.61
44 45 2.162681 CGAATCCTGCTTTTCCTTGGT 58.837 47.619 0.00 0.00 0.00 3.67
45 46 2.162408 CGAATCCTGCTTTTCCTTGGTC 59.838 50.000 0.00 0.00 0.00 4.02
46 47 2.978156 ATCCTGCTTTTCCTTGGTCA 57.022 45.000 0.00 0.00 0.00 4.02
47 48 1.981256 TCCTGCTTTTCCTTGGTCAC 58.019 50.000 0.00 0.00 0.00 3.67
48 49 1.494721 TCCTGCTTTTCCTTGGTCACT 59.505 47.619 0.00 0.00 0.00 3.41
49 50 1.610522 CCTGCTTTTCCTTGGTCACTG 59.389 52.381 0.00 0.00 0.00 3.66
50 51 2.301346 CTGCTTTTCCTTGGTCACTGT 58.699 47.619 0.00 0.00 0.00 3.55
51 52 2.023673 TGCTTTTCCTTGGTCACTGTG 58.976 47.619 0.17 0.17 0.00 3.66
52 53 2.297701 GCTTTTCCTTGGTCACTGTGA 58.702 47.619 6.36 6.36 0.00 3.58
53 54 2.887152 GCTTTTCCTTGGTCACTGTGAT 59.113 45.455 14.37 0.00 0.00 3.06
54 55 4.072131 GCTTTTCCTTGGTCACTGTGATA 58.928 43.478 14.37 3.74 0.00 2.15
55 56 4.083271 GCTTTTCCTTGGTCACTGTGATAC 60.083 45.833 14.37 10.69 0.00 2.24
56 57 3.313012 TTCCTTGGTCACTGTGATACG 57.687 47.619 14.37 4.43 0.00 3.06
57 58 2.521126 TCCTTGGTCACTGTGATACGA 58.479 47.619 14.37 9.12 0.00 3.43
58 59 2.230508 TCCTTGGTCACTGTGATACGAC 59.769 50.000 14.37 0.77 0.00 4.34
59 60 2.231478 CCTTGGTCACTGTGATACGACT 59.769 50.000 14.37 0.00 0.00 4.18
60 61 3.306088 CCTTGGTCACTGTGATACGACTT 60.306 47.826 14.37 0.00 0.00 3.01
61 62 4.307432 CTTGGTCACTGTGATACGACTTT 58.693 43.478 14.37 0.00 0.00 2.66
62 63 4.330944 TGGTCACTGTGATACGACTTTT 57.669 40.909 14.37 0.00 0.00 2.27
63 64 4.055360 TGGTCACTGTGATACGACTTTTG 58.945 43.478 14.37 0.00 0.00 2.44
64 65 3.432252 GGTCACTGTGATACGACTTTTGG 59.568 47.826 14.37 0.00 0.00 3.28
65 66 3.432252 GTCACTGTGATACGACTTTTGGG 59.568 47.826 14.37 0.00 0.00 4.12
66 67 2.159627 CACTGTGATACGACTTTTGGGC 59.840 50.000 0.32 0.00 0.00 5.36
67 68 1.737793 CTGTGATACGACTTTTGGGCC 59.262 52.381 0.00 0.00 0.00 5.80
68 69 1.349688 TGTGATACGACTTTTGGGCCT 59.650 47.619 4.53 0.00 0.00 5.19
69 70 2.568062 TGTGATACGACTTTTGGGCCTA 59.432 45.455 4.53 0.00 0.00 3.93
70 71 3.008157 TGTGATACGACTTTTGGGCCTAA 59.992 43.478 4.53 0.00 0.00 2.69
71 72 4.196971 GTGATACGACTTTTGGGCCTAAT 58.803 43.478 0.85 0.00 0.00 1.73
72 73 5.104859 TGTGATACGACTTTTGGGCCTAATA 60.105 40.000 0.85 0.00 0.00 0.98
73 74 5.818857 GTGATACGACTTTTGGGCCTAATAA 59.181 40.000 0.85 0.00 0.00 1.40
74 75 6.316890 GTGATACGACTTTTGGGCCTAATAAA 59.683 38.462 0.85 0.00 0.00 1.40
75 76 7.012989 GTGATACGACTTTTGGGCCTAATAAAT 59.987 37.037 0.85 0.00 0.00 1.40
76 77 5.830000 ACGACTTTTGGGCCTAATAAATC 57.170 39.130 0.85 0.00 0.00 2.17
77 78 4.643334 ACGACTTTTGGGCCTAATAAATCC 59.357 41.667 0.85 0.00 0.00 3.01
78 79 4.037565 CGACTTTTGGGCCTAATAAATCCC 59.962 45.833 0.85 0.00 39.22 3.85
79 80 3.958147 ACTTTTGGGCCTAATAAATCCCG 59.042 43.478 0.85 0.00 41.65 5.14
80 81 3.955524 TTTGGGCCTAATAAATCCCGA 57.044 42.857 0.85 0.00 41.65 5.14
81 82 2.943036 TGGGCCTAATAAATCCCGAC 57.057 50.000 4.53 0.00 41.65 4.79
82 83 1.071071 TGGGCCTAATAAATCCCGACG 59.929 52.381 4.53 0.00 41.65 5.12
83 84 1.609841 GGGCCTAATAAATCCCGACGG 60.610 57.143 6.99 6.99 0.00 4.79
84 85 1.345415 GGCCTAATAAATCCCGACGGA 59.655 52.381 17.49 1.45 44.33 4.69
85 86 2.612221 GGCCTAATAAATCCCGACGGAG 60.612 54.545 17.49 5.68 43.12 4.63
86 87 2.612221 GCCTAATAAATCCCGACGGAGG 60.612 54.545 17.49 12.50 43.12 4.30
99 100 2.108970 GACGGAGGGAGTATCTTGGTT 58.891 52.381 0.00 0.00 33.73 3.67
114 115 8.545472 AGTATCTTGGTTATACTTAGTTGCCAA 58.455 33.333 0.00 0.26 36.92 4.52
125 126 6.024552 ACTTAGTTGCCAACAATAACATGG 57.975 37.500 10.69 0.00 38.27 3.66
159 160 1.631898 TGGTTCCTAAGTTGGCTACCC 59.368 52.381 0.00 0.00 33.46 3.69
164 165 1.913419 CCTAAGTTGGCTACCCTGGAA 59.087 52.381 0.00 0.00 0.00 3.53
180 181 3.888930 CCTGGAAACTAAGTTCCTTGCAA 59.111 43.478 0.00 0.00 46.29 4.08
183 184 3.005472 GGAAACTAAGTTCCTTGCAACCC 59.995 47.826 0.00 0.00 43.32 4.11
187 188 2.989253 GTTCCTTGCAACCCCGGG 60.989 66.667 15.80 15.80 0.00 5.73
188 189 3.179339 TTCCTTGCAACCCCGGGA 61.179 61.111 26.32 0.00 0.00 5.14
280 281 5.483937 AGACAGTCATGGTATCCAACTTACA 59.516 40.000 2.66 0.00 36.95 2.41
335 336 3.618690 ACATGTAGGGAGTTGCTTCTC 57.381 47.619 0.00 1.16 0.00 2.87
355 356 6.585695 TCTCGTATCACTAAAGTTGGTTCT 57.414 37.500 0.00 0.00 0.00 3.01
356 357 6.989659 TCTCGTATCACTAAAGTTGGTTCTT 58.010 36.000 0.00 0.00 0.00 2.52
374 375 4.503741 TCTTGTGGCACTAAAATTGCTC 57.496 40.909 19.83 0.00 40.07 4.26
376 377 4.523943 TCTTGTGGCACTAAAATTGCTCAT 59.476 37.500 19.83 0.00 40.07 2.90
377 378 4.439305 TGTGGCACTAAAATTGCTCATC 57.561 40.909 19.83 0.00 40.07 2.92
382 383 5.105797 TGGCACTAAAATTGCTCATCGAAAT 60.106 36.000 0.00 0.00 40.07 2.17
383 384 6.094742 TGGCACTAAAATTGCTCATCGAAATA 59.905 34.615 0.00 0.00 40.07 1.40
384 385 6.972328 GGCACTAAAATTGCTCATCGAAATAA 59.028 34.615 0.00 0.00 40.07 1.40
433 434 9.689976 AGATCTAGTTTCGATGATCTATTTGTG 57.310 33.333 0.00 0.00 42.38 3.33
436 437 9.521503 TCTAGTTTCGATGATCTATTTGTGAAG 57.478 33.333 0.00 0.00 0.00 3.02
437 438 9.521503 CTAGTTTCGATGATCTATTTGTGAAGA 57.478 33.333 0.00 0.00 0.00 2.87
440 441 6.471233 TCGATGATCTATTTGTGAAGAGGT 57.529 37.500 0.00 0.00 0.00 3.85
441 442 7.582667 TCGATGATCTATTTGTGAAGAGGTA 57.417 36.000 0.00 0.00 0.00 3.08
442 443 8.183104 TCGATGATCTATTTGTGAAGAGGTAT 57.817 34.615 0.00 0.00 0.00 2.73
443 444 9.297037 TCGATGATCTATTTGTGAAGAGGTATA 57.703 33.333 0.00 0.00 0.00 1.47
444 445 9.566530 CGATGATCTATTTGTGAAGAGGTATAG 57.433 37.037 0.00 0.00 0.00 1.31
445 446 9.364989 GATGATCTATTTGTGAAGAGGTATAGC 57.635 37.037 0.00 0.00 0.00 2.97
446 447 8.484214 TGATCTATTTGTGAAGAGGTATAGCT 57.516 34.615 3.58 3.58 0.00 3.32
451 452 5.707242 TTGTGAAGAGGTATAGCTATCGG 57.293 43.478 10.16 0.00 0.00 4.18
452 453 4.726583 TGTGAAGAGGTATAGCTATCGGT 58.273 43.478 10.16 0.00 0.00 4.69
453 454 4.760715 TGTGAAGAGGTATAGCTATCGGTC 59.239 45.833 10.16 5.34 0.00 4.79
454 455 4.156373 GTGAAGAGGTATAGCTATCGGTCC 59.844 50.000 10.16 8.96 0.00 4.46
456 457 2.920941 AGAGGTATAGCTATCGGTCCCT 59.079 50.000 10.16 8.76 0.00 4.20
457 458 3.334280 AGAGGTATAGCTATCGGTCCCTT 59.666 47.826 10.16 0.00 0.00 3.95
458 459 3.695556 GAGGTATAGCTATCGGTCCCTTC 59.304 52.174 10.16 1.21 0.00 3.46
459 460 3.075582 AGGTATAGCTATCGGTCCCTTCA 59.924 47.826 10.16 0.00 0.00 3.02
460 461 3.830755 GGTATAGCTATCGGTCCCTTCAA 59.169 47.826 10.16 0.00 0.00 2.69
461 462 4.082136 GGTATAGCTATCGGTCCCTTCAAG 60.082 50.000 10.16 0.00 0.00 3.02
462 463 1.123928 AGCTATCGGTCCCTTCAAGG 58.876 55.000 0.00 0.00 34.30 3.61
463 464 1.120530 GCTATCGGTCCCTTCAAGGA 58.879 55.000 4.43 0.00 37.67 3.36
468 469 2.747686 GTCCCTTCAAGGACGGCA 59.252 61.111 4.43 0.00 46.57 5.69
469 470 1.376037 GTCCCTTCAAGGACGGCAG 60.376 63.158 4.43 0.00 46.57 4.85
470 471 1.535444 TCCCTTCAAGGACGGCAGA 60.535 57.895 4.43 0.00 37.67 4.26
480 481 3.134574 AGGACGGCAGAAACACAATTA 57.865 42.857 0.00 0.00 0.00 1.40
492 493 7.307278 GCAGAAACACAATTATGACATTTTGCA 60.307 33.333 9.52 0.00 0.00 4.08
501 502 9.719279 CAATTATGACATTTTGCACAAAAGTTT 57.281 25.926 13.43 1.53 42.72 2.66
509 510 7.962373 ACATTTTGCACAAAAGTTTTAGCTTTC 59.038 29.630 19.53 2.56 42.72 2.62
510 511 6.415798 TTTGCACAAAAGTTTTAGCTTTCC 57.584 33.333 19.53 1.15 37.68 3.13
511 512 5.337578 TGCACAAAAGTTTTAGCTTTCCT 57.662 34.783 19.53 0.00 37.68 3.36
512 513 5.729510 TGCACAAAAGTTTTAGCTTTCCTT 58.270 33.333 19.53 0.00 37.68 3.36
513 514 6.169800 TGCACAAAAGTTTTAGCTTTCCTTT 58.830 32.000 19.53 0.00 37.68 3.11
514 515 6.652900 TGCACAAAAGTTTTAGCTTTCCTTTT 59.347 30.769 19.53 0.00 37.68 2.27
541 542 7.996098 TTCTAGACATGGTTTCCTTTTTAGG 57.004 36.000 0.00 0.00 0.00 2.69
542 543 5.944007 TCTAGACATGGTTTCCTTTTTAGGC 59.056 40.000 0.00 0.00 0.00 3.93
544 545 2.560981 ACATGGTTTCCTTTTTAGGCGG 59.439 45.455 0.00 0.00 0.00 6.13
547 548 2.158579 TGGTTTCCTTTTTAGGCGGAGT 60.159 45.455 0.00 0.00 0.00 3.85
597 7089 5.435686 TGTGTCTAGAACCATTAGCCAAT 57.564 39.130 0.00 0.00 0.00 3.16
607 7099 3.442273 ACCATTAGCCAATAAACGTGTGG 59.558 43.478 0.00 0.00 35.39 4.17
612 7104 0.896019 CCAATAAACGTGTGGGGGCA 60.896 55.000 0.00 0.00 0.00 5.36
648 7140 2.940410 GTCACCGTTTCCTTTTCAGTCA 59.060 45.455 0.00 0.00 0.00 3.41
709 7203 2.749621 GGACCACTCACCAGCAAATTAG 59.250 50.000 0.00 0.00 0.00 1.73
710 7204 3.412386 GACCACTCACCAGCAAATTAGT 58.588 45.455 0.00 0.00 0.00 2.24
711 7205 4.564821 GGACCACTCACCAGCAAATTAGTA 60.565 45.833 0.00 0.00 0.00 1.82
726 7220 4.988708 ATTAGTACTAGCTAGACGCGTC 57.011 45.455 31.30 31.30 45.59 5.19
731 10891 2.780714 ACTAGCTAGACGCGTCCATAT 58.219 47.619 34.08 19.11 45.59 1.78
767 10927 3.196901 ACGGTAGGTGCATGATAAAGTGA 59.803 43.478 0.00 0.00 0.00 3.41
799 10959 2.554893 TGGCCAATAACGTTTCCAAGAC 59.445 45.455 5.91 0.00 0.00 3.01
922 11085 1.282875 GGCAAACGACAGAACAGCC 59.717 57.895 0.00 0.00 0.00 4.85
1015 11544 1.252175 TTGCACACAACACACAACCT 58.748 45.000 0.00 0.00 0.00 3.50
1114 11646 2.513204 CCCTGCTCTGCATCACCG 60.513 66.667 0.00 0.00 38.13 4.94
1610 12157 4.143333 CACGTACCTCCGGCTGGG 62.143 72.222 12.87 11.33 35.24 4.45
1721 12268 4.157120 GCTCGGCATGGGGTACGT 62.157 66.667 0.00 0.00 0.00 3.57
1781 12328 1.277580 ATGGTCAGGAGGAAGGCCAG 61.278 60.000 5.01 0.00 36.29 4.85
1801 12352 3.851128 GTACGCCCTCCCTCTGCC 61.851 72.222 0.00 0.00 0.00 4.85
1826 12380 5.163248 TGTGAACCATGAAGTCCAGTAGAAA 60.163 40.000 0.00 0.00 0.00 2.52
1827 12381 5.179555 GTGAACCATGAAGTCCAGTAGAAAC 59.820 44.000 0.00 0.00 0.00 2.78
1828 12382 4.974645 ACCATGAAGTCCAGTAGAAACA 57.025 40.909 0.00 0.00 0.00 2.83
1829 12383 5.505181 ACCATGAAGTCCAGTAGAAACAT 57.495 39.130 0.00 0.00 0.00 2.71
1830 12384 5.491982 ACCATGAAGTCCAGTAGAAACATC 58.508 41.667 0.00 0.00 0.00 3.06
1831 12385 5.249393 ACCATGAAGTCCAGTAGAAACATCT 59.751 40.000 0.00 0.00 0.00 2.90
1832 12386 5.583854 CCATGAAGTCCAGTAGAAACATCTG 59.416 44.000 0.00 0.00 0.00 2.90
1840 12394 4.926238 CCAGTAGAAACATCTGTCTGTCAC 59.074 45.833 9.93 0.00 0.00 3.67
1851 12405 1.768275 TGTCTGTCACCACATGTCCTT 59.232 47.619 0.00 0.00 0.00 3.36
1852 12406 2.969262 TGTCTGTCACCACATGTCCTTA 59.031 45.455 0.00 0.00 0.00 2.69
1853 12407 3.006859 TGTCTGTCACCACATGTCCTTAG 59.993 47.826 0.00 0.00 0.00 2.18
1856 12410 4.021104 TCTGTCACCACATGTCCTTAGAAG 60.021 45.833 0.00 0.00 0.00 2.85
1858 12412 4.246458 GTCACCACATGTCCTTAGAAGTC 58.754 47.826 0.00 0.00 0.00 3.01
1859 12413 3.260884 TCACCACATGTCCTTAGAAGTCC 59.739 47.826 0.00 0.00 0.00 3.85
1861 12415 3.515901 ACCACATGTCCTTAGAAGTCCTC 59.484 47.826 0.00 0.00 0.00 3.71
1862 12416 3.772025 CCACATGTCCTTAGAAGTCCTCT 59.228 47.826 0.00 0.00 38.28 3.69
1916 12470 2.032681 AACTGGCTGAACGAGGGC 59.967 61.111 0.00 0.00 0.00 5.19
1974 12528 0.525029 GTACGACTACAAGAGCGCCC 60.525 60.000 2.29 0.00 0.00 6.13
2070 12624 1.227823 CACTTCAACGCCACCTCCA 60.228 57.895 0.00 0.00 0.00 3.86
2110 12664 2.491693 GAGAGGGGAGCTCATAGATTCG 59.508 54.545 17.19 0.00 32.67 3.34
2143 12702 5.471456 AGACCTGTAAATTTGCAGAGTCAAG 59.529 40.000 32.89 22.16 42.54 3.02
2185 12744 4.867608 GTCTGTCTAGAAATCCAGCAGTTC 59.132 45.833 0.00 0.00 34.01 3.01
2400 12960 7.147637 GGAGACAGGAAGGTGAAATATCTACTT 60.148 40.741 0.00 0.00 0.00 2.24
2657 13217 1.410517 CATGTCTATCTCCACTGGCGT 59.589 52.381 0.00 0.00 0.00 5.68
2658 13218 1.103803 TGTCTATCTCCACTGGCGTC 58.896 55.000 0.00 0.00 0.00 5.19
2659 13219 0.029567 GTCTATCTCCACTGGCGTCG 59.970 60.000 0.00 0.00 0.00 5.12
2848 13413 1.941294 GATTCACTCGCTCGAGACCTA 59.059 52.381 23.95 8.08 44.53 3.08
2970 13535 1.600485 ACGCGATTTCCGTTTTGAACT 59.400 42.857 15.93 0.00 41.15 3.01
2977 13542 2.404923 TCCGTTTTGAACTCACACCA 57.595 45.000 0.00 0.00 0.00 4.17
2999 13564 6.722129 ACCATGTTTAGCCACCTGTTTTAATA 59.278 34.615 0.00 0.00 0.00 0.98
3141 13706 4.768968 ACAACATGCAGAGAATAAAGGCTT 59.231 37.500 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.038799 TCGGGGAATAAATACCCTCTATTGTAC 60.039 40.741 0.00 0.00 44.97 2.90
1 2 7.018150 TCGGGGAATAAATACCCTCTATTGTA 58.982 38.462 0.00 0.00 44.97 2.41
2 3 5.847817 TCGGGGAATAAATACCCTCTATTGT 59.152 40.000 0.00 0.00 44.97 2.71
3 4 6.368779 TCGGGGAATAAATACCCTCTATTG 57.631 41.667 0.00 0.00 44.97 1.90
4 5 7.311739 GGATTCGGGGAATAAATACCCTCTATT 60.312 40.741 0.00 0.00 44.97 1.73
5 6 6.158169 GGATTCGGGGAATAAATACCCTCTAT 59.842 42.308 0.00 0.00 44.97 1.98
6 7 5.486419 GGATTCGGGGAATAAATACCCTCTA 59.514 44.000 0.00 0.00 44.97 2.43
7 8 4.288887 GGATTCGGGGAATAAATACCCTCT 59.711 45.833 0.00 0.00 44.97 3.69
8 9 4.288887 AGGATTCGGGGAATAAATACCCTC 59.711 45.833 0.00 0.00 44.97 4.30
9 10 4.042934 CAGGATTCGGGGAATAAATACCCT 59.957 45.833 0.00 0.00 44.97 4.34
10 11 4.332828 CAGGATTCGGGGAATAAATACCC 58.667 47.826 0.00 0.00 44.89 3.69
11 12 3.756963 GCAGGATTCGGGGAATAAATACC 59.243 47.826 0.00 0.00 31.89 2.73
12 13 4.652822 AGCAGGATTCGGGGAATAAATAC 58.347 43.478 0.00 0.00 31.89 1.89
13 14 4.993705 AGCAGGATTCGGGGAATAAATA 57.006 40.909 0.00 0.00 31.89 1.40
14 15 3.884037 AGCAGGATTCGGGGAATAAAT 57.116 42.857 0.00 0.00 31.89 1.40
15 16 3.662759 AAGCAGGATTCGGGGAATAAA 57.337 42.857 0.00 0.00 31.89 1.40
16 17 3.662759 AAAGCAGGATTCGGGGAATAA 57.337 42.857 0.00 0.00 31.89 1.40
17 18 3.551846 GAAAAGCAGGATTCGGGGAATA 58.448 45.455 0.00 0.00 31.89 1.75
18 19 2.379005 GAAAAGCAGGATTCGGGGAAT 58.621 47.619 0.00 0.00 34.71 3.01
19 20 1.615919 GGAAAAGCAGGATTCGGGGAA 60.616 52.381 0.00 0.00 0.00 3.97
20 21 0.034477 GGAAAAGCAGGATTCGGGGA 60.034 55.000 0.00 0.00 0.00 4.81
21 22 0.034089 AGGAAAAGCAGGATTCGGGG 60.034 55.000 0.00 0.00 0.00 5.73
22 23 1.474077 CAAGGAAAAGCAGGATTCGGG 59.526 52.381 0.00 0.00 0.00 5.14
23 24 1.474077 CCAAGGAAAAGCAGGATTCGG 59.526 52.381 0.00 0.00 0.00 4.30
24 25 2.162408 GACCAAGGAAAAGCAGGATTCG 59.838 50.000 0.00 0.00 0.00 3.34
25 26 3.057245 GTGACCAAGGAAAAGCAGGATTC 60.057 47.826 0.00 0.00 0.00 2.52
26 27 2.893489 GTGACCAAGGAAAAGCAGGATT 59.107 45.455 0.00 0.00 0.00 3.01
27 28 2.108952 AGTGACCAAGGAAAAGCAGGAT 59.891 45.455 0.00 0.00 0.00 3.24
28 29 1.494721 AGTGACCAAGGAAAAGCAGGA 59.505 47.619 0.00 0.00 0.00 3.86
29 30 1.610522 CAGTGACCAAGGAAAAGCAGG 59.389 52.381 0.00 0.00 0.00 4.85
30 31 2.033801 CACAGTGACCAAGGAAAAGCAG 59.966 50.000 0.00 0.00 0.00 4.24
31 32 2.023673 CACAGTGACCAAGGAAAAGCA 58.976 47.619 0.00 0.00 0.00 3.91
32 33 2.297701 TCACAGTGACCAAGGAAAAGC 58.702 47.619 0.00 0.00 0.00 3.51
33 34 4.152402 CGTATCACAGTGACCAAGGAAAAG 59.848 45.833 5.05 0.00 0.00 2.27
34 35 4.062293 CGTATCACAGTGACCAAGGAAAA 58.938 43.478 5.05 0.00 0.00 2.29
35 36 3.322541 TCGTATCACAGTGACCAAGGAAA 59.677 43.478 5.05 0.00 0.00 3.13
36 37 2.894765 TCGTATCACAGTGACCAAGGAA 59.105 45.455 5.05 0.00 0.00 3.36
37 38 2.230508 GTCGTATCACAGTGACCAAGGA 59.769 50.000 5.05 3.27 0.00 3.36
38 39 2.231478 AGTCGTATCACAGTGACCAAGG 59.769 50.000 5.05 0.84 31.75 3.61
39 40 3.577649 AGTCGTATCACAGTGACCAAG 57.422 47.619 5.05 0.00 31.75 3.61
40 41 4.330944 AAAGTCGTATCACAGTGACCAA 57.669 40.909 5.05 0.00 31.75 3.67
41 42 4.055360 CAAAAGTCGTATCACAGTGACCA 58.945 43.478 5.05 0.00 31.75 4.02
42 43 3.432252 CCAAAAGTCGTATCACAGTGACC 59.568 47.826 5.05 0.00 31.75 4.02
43 44 3.432252 CCCAAAAGTCGTATCACAGTGAC 59.568 47.826 5.05 0.00 0.00 3.67
44 45 3.659786 CCCAAAAGTCGTATCACAGTGA 58.340 45.455 5.50 5.50 0.00 3.41
45 46 2.159627 GCCCAAAAGTCGTATCACAGTG 59.840 50.000 0.00 0.00 0.00 3.66
46 47 2.423577 GCCCAAAAGTCGTATCACAGT 58.576 47.619 0.00 0.00 0.00 3.55
47 48 1.737793 GGCCCAAAAGTCGTATCACAG 59.262 52.381 0.00 0.00 0.00 3.66
48 49 1.349688 AGGCCCAAAAGTCGTATCACA 59.650 47.619 0.00 0.00 0.00 3.58
49 50 2.109425 AGGCCCAAAAGTCGTATCAC 57.891 50.000 0.00 0.00 0.00 3.06
50 51 3.985019 TTAGGCCCAAAAGTCGTATCA 57.015 42.857 0.00 0.00 0.00 2.15
51 52 6.930667 TTTATTAGGCCCAAAAGTCGTATC 57.069 37.500 0.00 0.00 0.00 2.24
52 53 6.489022 GGATTTATTAGGCCCAAAAGTCGTAT 59.511 38.462 0.00 0.00 0.00 3.06
53 54 5.824097 GGATTTATTAGGCCCAAAAGTCGTA 59.176 40.000 0.00 0.00 0.00 3.43
54 55 4.643334 GGATTTATTAGGCCCAAAAGTCGT 59.357 41.667 0.00 0.00 0.00 4.34
55 56 4.037565 GGGATTTATTAGGCCCAAAAGTCG 59.962 45.833 0.00 0.00 40.39 4.18
56 57 4.037565 CGGGATTTATTAGGCCCAAAAGTC 59.962 45.833 0.00 0.00 40.71 3.01
57 58 3.958147 CGGGATTTATTAGGCCCAAAAGT 59.042 43.478 0.00 0.00 40.71 2.66
58 59 4.037565 GTCGGGATTTATTAGGCCCAAAAG 59.962 45.833 0.00 0.00 40.71 2.27
59 60 3.955551 GTCGGGATTTATTAGGCCCAAAA 59.044 43.478 0.00 0.00 40.71 2.44
60 61 3.558033 GTCGGGATTTATTAGGCCCAAA 58.442 45.455 0.00 0.00 40.71 3.28
61 62 2.485835 CGTCGGGATTTATTAGGCCCAA 60.486 50.000 0.00 0.00 40.71 4.12
62 63 1.071071 CGTCGGGATTTATTAGGCCCA 59.929 52.381 0.00 0.00 40.71 5.36
63 64 1.609841 CCGTCGGGATTTATTAGGCCC 60.610 57.143 2.34 0.00 37.21 5.80
64 65 1.345415 TCCGTCGGGATTTATTAGGCC 59.655 52.381 12.29 0.00 37.43 5.19
65 66 2.612221 CCTCCGTCGGGATTTATTAGGC 60.612 54.545 12.29 0.00 42.83 3.93
66 67 3.314541 CCTCCGTCGGGATTTATTAGG 57.685 52.381 12.29 4.12 42.83 2.69
76 77 0.467659 AAGATACTCCCTCCGTCGGG 60.468 60.000 12.29 1.87 46.13 5.14
77 78 0.669077 CAAGATACTCCCTCCGTCGG 59.331 60.000 4.39 4.39 0.00 4.79
78 79 0.669077 CCAAGATACTCCCTCCGTCG 59.331 60.000 0.00 0.00 0.00 5.12
79 80 1.777941 ACCAAGATACTCCCTCCGTC 58.222 55.000 0.00 0.00 0.00 4.79
80 81 2.249309 AACCAAGATACTCCCTCCGT 57.751 50.000 0.00 0.00 0.00 4.69
81 82 5.078256 AGTATAACCAAGATACTCCCTCCG 58.922 45.833 0.00 0.00 35.63 4.63
82 83 6.997942 AAGTATAACCAAGATACTCCCTCC 57.002 41.667 0.00 0.00 38.82 4.30
83 84 8.709272 ACTAAGTATAACCAAGATACTCCCTC 57.291 38.462 0.00 0.00 38.82 4.30
84 85 8.925338 CAACTAAGTATAACCAAGATACTCCCT 58.075 37.037 0.00 0.00 38.82 4.20
85 86 7.656542 GCAACTAAGTATAACCAAGATACTCCC 59.343 40.741 0.00 0.00 38.82 4.30
86 87 7.656542 GGCAACTAAGTATAACCAAGATACTCC 59.343 40.741 0.00 0.00 38.82 3.85
87 88 8.202137 TGGCAACTAAGTATAACCAAGATACTC 58.798 37.037 0.00 0.00 36.96 2.59
88 89 8.086143 TGGCAACTAAGTATAACCAAGATACT 57.914 34.615 0.00 0.00 38.47 2.12
89 90 8.610035 GTTGGCAACTAAGTATAACCAAGATAC 58.390 37.037 22.66 0.00 36.44 2.24
99 100 8.898761 CCATGTTATTGTTGGCAACTAAGTATA 58.101 33.333 28.71 15.52 37.44 1.47
114 115 7.643569 TGATATGCAACTTCCATGTTATTGT 57.356 32.000 0.00 0.00 0.00 2.71
125 126 6.543831 ACTTAGGAACCATGATATGCAACTTC 59.456 38.462 0.00 0.00 0.00 3.01
180 181 1.503800 CCTACAATACTTCCCGGGGT 58.496 55.000 23.50 14.68 0.00 4.95
183 184 2.112998 TGTCCCTACAATACTTCCCGG 58.887 52.381 0.00 0.00 30.91 5.73
187 188 6.698380 TCAGAAGTTGTCCCTACAATACTTC 58.302 40.000 12.15 12.15 46.84 3.01
188 189 6.681729 TCAGAAGTTGTCCCTACAATACTT 57.318 37.500 0.00 0.00 46.84 2.24
252 253 5.483937 AGTTGGATACCATGACTGTCTAACA 59.516 40.000 9.51 0.00 34.13 2.41
258 259 5.755409 TGTAAGTTGGATACCATGACTGT 57.245 39.130 0.00 0.00 31.53 3.55
261 262 8.902540 TGATATTGTAAGTTGGATACCATGAC 57.097 34.615 0.00 0.00 31.53 3.06
270 271 9.391006 GTTGACCTAATGATATTGTAAGTTGGA 57.609 33.333 0.00 0.00 0.00 3.53
303 304 8.356657 CAACTCCCTACATGTTTGTTTTTCATA 58.643 33.333 2.30 0.00 37.28 2.15
321 322 2.166664 GTGATACGAGAAGCAACTCCCT 59.833 50.000 0.00 0.00 33.83 4.20
335 336 6.347402 CCACAAGAACCAACTTTAGTGATACG 60.347 42.308 0.00 0.00 30.52 3.06
355 356 4.615682 CGATGAGCAATTTTAGTGCCACAA 60.616 41.667 0.00 0.00 43.27 3.33
356 357 3.119884 CGATGAGCAATTTTAGTGCCACA 60.120 43.478 0.00 0.00 43.27 4.17
421 422 8.484214 AGCTATACCTCTTCACAAATAGATCA 57.516 34.615 0.00 0.00 0.00 2.92
424 425 8.731605 CGATAGCTATACCTCTTCACAAATAGA 58.268 37.037 6.13 0.00 0.00 1.98
429 430 5.138276 ACCGATAGCTATACCTCTTCACAA 58.862 41.667 6.13 0.00 0.00 3.33
433 434 3.695556 GGGACCGATAGCTATACCTCTTC 59.304 52.174 6.13 0.00 0.00 2.87
436 437 3.369242 AGGGACCGATAGCTATACCTC 57.631 52.381 6.13 1.12 0.00 3.85
437 438 3.075582 TGAAGGGACCGATAGCTATACCT 59.924 47.826 6.13 6.87 0.00 3.08
440 441 4.087182 CCTTGAAGGGACCGATAGCTATA 58.913 47.826 6.13 0.00 0.00 1.31
441 442 2.900546 CCTTGAAGGGACCGATAGCTAT 59.099 50.000 5.76 5.76 0.00 2.97
442 443 2.091499 TCCTTGAAGGGACCGATAGCTA 60.091 50.000 11.99 0.00 35.59 3.32
443 444 1.123928 CCTTGAAGGGACCGATAGCT 58.876 55.000 2.50 0.00 0.00 3.32
444 445 1.120530 TCCTTGAAGGGACCGATAGC 58.879 55.000 11.99 0.00 35.59 2.97
452 453 1.125093 TTCTGCCGTCCTTGAAGGGA 61.125 55.000 11.99 0.00 35.59 4.20
453 454 0.250727 TTTCTGCCGTCCTTGAAGGG 60.251 55.000 11.99 0.00 35.59 3.95
454 455 0.875059 GTTTCTGCCGTCCTTGAAGG 59.125 55.000 4.45 4.45 36.46 3.46
456 457 1.305201 GTGTTTCTGCCGTCCTTGAA 58.695 50.000 0.00 0.00 0.00 2.69
457 458 0.179234 TGTGTTTCTGCCGTCCTTGA 59.821 50.000 0.00 0.00 0.00 3.02
458 459 1.021202 TTGTGTTTCTGCCGTCCTTG 58.979 50.000 0.00 0.00 0.00 3.61
459 460 1.981256 ATTGTGTTTCTGCCGTCCTT 58.019 45.000 0.00 0.00 0.00 3.36
460 461 1.981256 AATTGTGTTTCTGCCGTCCT 58.019 45.000 0.00 0.00 0.00 3.85
461 462 3.438781 TCATAATTGTGTTTCTGCCGTCC 59.561 43.478 1.86 0.00 0.00 4.79
462 463 4.083537 TGTCATAATTGTGTTTCTGCCGTC 60.084 41.667 1.86 0.00 0.00 4.79
463 464 3.818210 TGTCATAATTGTGTTTCTGCCGT 59.182 39.130 1.86 0.00 0.00 5.68
464 465 4.418013 TGTCATAATTGTGTTTCTGCCG 57.582 40.909 1.86 0.00 0.00 5.69
465 466 7.512297 CAAAATGTCATAATTGTGTTTCTGCC 58.488 34.615 1.86 0.00 0.00 4.85
466 467 7.011189 GCAAAATGTCATAATTGTGTTTCTGC 58.989 34.615 1.86 5.56 28.94 4.26
467 468 8.005466 GTGCAAAATGTCATAATTGTGTTTCTG 58.995 33.333 1.86 0.56 28.94 3.02
468 469 7.710044 TGTGCAAAATGTCATAATTGTGTTTCT 59.290 29.630 1.86 0.00 28.94 2.52
469 470 7.849496 TGTGCAAAATGTCATAATTGTGTTTC 58.151 30.769 1.86 0.00 28.94 2.78
470 471 7.783090 TGTGCAAAATGTCATAATTGTGTTT 57.217 28.000 1.86 0.00 28.94 2.83
480 481 7.280652 AGCTAAAACTTTTGTGCAAAATGTCAT 59.719 29.630 10.07 6.62 39.29 3.06
522 523 3.366985 CCGCCTAAAAAGGAAACCATGTC 60.367 47.826 0.00 0.00 0.00 3.06
570 571 5.758784 GGCTAATGGTTCTAGACACATAACC 59.241 44.000 8.36 5.60 41.45 2.85
581 582 6.092944 CACACGTTTATTGGCTAATGGTTCTA 59.907 38.462 5.42 0.00 0.00 2.10
589 7081 2.438411 CCCCACACGTTTATTGGCTAA 58.562 47.619 0.00 0.00 0.00 3.09
597 7089 2.916661 TGTGCCCCCACACGTTTA 59.083 55.556 0.00 0.00 46.51 2.01
607 7099 0.036732 TCATCTTGTCTGTGTGCCCC 59.963 55.000 0.00 0.00 0.00 5.80
612 7104 2.288457 CGGTGACTCATCTTGTCTGTGT 60.288 50.000 0.00 0.00 35.63 3.72
664 7158 4.922206 AGGCACACATCCATAAGAAGAAA 58.078 39.130 0.00 0.00 0.00 2.52
709 7203 1.293924 TGGACGCGTCTAGCTAGTAC 58.706 55.000 35.50 17.79 45.59 2.73
710 7204 2.251409 ATGGACGCGTCTAGCTAGTA 57.749 50.000 35.50 14.03 45.59 1.82
711 7205 2.251409 TATGGACGCGTCTAGCTAGT 57.749 50.000 35.50 18.75 45.59 2.57
767 10927 4.404715 ACGTTATTGGCCAGTACTCTATGT 59.595 41.667 7.60 2.23 0.00 2.29
799 10959 1.651987 TTCTAAAGCCGCGGAGATTG 58.348 50.000 33.48 15.40 0.00 2.67
922 11085 1.610038 TGTGGAATTGAAGCACTGCTG 59.390 47.619 3.73 0.00 39.62 4.41
1015 11544 0.459585 GGCGACATTGCTCGACCTTA 60.460 55.000 11.20 0.00 35.48 2.69
1278 11825 2.815647 CGCCGGGAGTGCTTCTTC 60.816 66.667 2.18 0.00 0.00 2.87
1721 12268 2.363018 CGAGGTCCCAGGAGAGCA 60.363 66.667 9.12 0.00 36.71 4.26
1801 12352 3.131709 ACTGGACTTCATGGTTCACAG 57.868 47.619 0.00 0.00 0.00 3.66
1826 12380 2.369860 ACATGTGGTGACAGACAGATGT 59.630 45.455 13.82 13.82 43.90 3.06
1827 12381 2.998670 GACATGTGGTGACAGACAGATG 59.001 50.000 1.15 12.84 44.46 2.90
1828 12382 2.027745 GGACATGTGGTGACAGACAGAT 60.028 50.000 1.15 0.00 44.46 2.90
1829 12383 1.344438 GGACATGTGGTGACAGACAGA 59.656 52.381 1.15 0.00 44.46 3.41
1830 12384 1.345741 AGGACATGTGGTGACAGACAG 59.654 52.381 1.15 0.00 44.46 3.51
1831 12385 1.423584 AGGACATGTGGTGACAGACA 58.576 50.000 1.15 0.00 44.46 3.41
1832 12386 2.550830 AAGGACATGTGGTGACAGAC 57.449 50.000 1.15 0.00 44.46 3.51
1840 12394 3.772025 AGAGGACTTCTAAGGACATGTGG 59.228 47.826 1.15 0.00 33.23 4.17
1851 12405 0.243907 GCACACGCAGAGGACTTCTA 59.756 55.000 0.00 0.00 38.36 2.10
1852 12406 1.005630 GCACACGCAGAGGACTTCT 60.006 57.895 0.00 0.00 38.36 2.85
1853 12407 1.300931 TGCACACGCAGAGGACTTC 60.301 57.895 0.00 0.00 45.36 3.01
1974 12528 0.332632 TCCAGGAAATCCTTGGCCTG 59.667 55.000 3.32 0.00 46.09 4.85
2110 12664 6.072175 TGCAAATTTACAGGTCTTCCACATAC 60.072 38.462 0.00 0.00 35.89 2.39
2143 12702 2.749441 GCCCTTCAGTGAGGCAGC 60.749 66.667 16.50 8.73 46.34 5.25
2163 12722 4.081420 GGAACTGCTGGATTTCTAGACAGA 60.081 45.833 11.27 0.00 34.92 3.41
2400 12960 2.279741 CTTTCTCGGATCGAATTGGCA 58.720 47.619 0.00 0.00 34.74 4.92
2445 13005 2.590007 GATCCAAGCAGCCGCGAT 60.590 61.111 8.23 0.00 45.49 4.58
2657 13217 2.545113 GCCAGACGATAATTACAGCCGA 60.545 50.000 0.00 0.00 0.00 5.54
2658 13218 1.792949 GCCAGACGATAATTACAGCCG 59.207 52.381 0.00 0.00 0.00 5.52
2848 13413 1.179814 GCCGACGGATATCCAGGTCT 61.180 60.000 20.50 0.00 35.14 3.85
2970 13535 1.423541 AGGTGGCTAAACATGGTGTGA 59.576 47.619 0.00 0.00 0.00 3.58
2977 13542 8.303876 CAAGTATTAAAACAGGTGGCTAAACAT 58.696 33.333 0.00 0.00 0.00 2.71
2999 13564 2.099405 CCAGTGTCAAACCCAACAAGT 58.901 47.619 0.00 0.00 0.00 3.16
3141 13706 7.233144 TCCTCCTGAATGATTTGAATGTTTTCA 59.767 33.333 0.00 0.00 40.09 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.