Multiple sequence alignment - TraesCS7D01G155500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G155500 chr7D 100.000 4517 0 0 1 4517 104093836 104089320 0.000000e+00 8342.0
1 TraesCS7D01G155500 chr7D 82.857 105 16 2 2914 3017 46839212 46839109 4.810000e-15 93.5
2 TraesCS7D01G155500 chr7A 95.861 3624 103 19 286 3899 108239340 108235754 0.000000e+00 5818.0
3 TraesCS7D01G155500 chr7A 90.234 512 39 5 4015 4517 108233330 108232821 0.000000e+00 658.0
4 TraesCS7D01G155500 chr7B 97.734 2869 53 5 966 3830 61911186 61908326 0.000000e+00 4927.0
5 TraesCS7D01G155500 chr7B 93.034 445 14 8 501 937 61911622 61911187 6.370000e-178 634.0
6 TraesCS7D01G155500 chr6B 85.004 1247 143 23 2008 3253 654734424 654733221 0.000000e+00 1227.0
7 TraesCS7D01G155500 chr6B 82.716 486 80 4 1047 1530 654735542 654735059 3.230000e-116 429.0
8 TraesCS7D01G155500 chr6B 89.510 143 14 1 361 503 676484375 676484516 3.590000e-41 180.0
9 TraesCS7D01G155500 chr6D 84.924 1247 144 18 2008 3253 433477556 433476353 0.000000e+00 1221.0
10 TraesCS7D01G155500 chr6D 98.606 287 3 1 1 286 436846874 436847160 1.450000e-139 507.0
11 TraesCS7D01G155500 chr6D 82.294 497 82 6 1047 1540 433478690 433478197 4.180000e-115 425.0
12 TraesCS7D01G155500 chr6A 84.800 1250 143 24 2008 3253 579438872 579437666 0.000000e+00 1212.0
13 TraesCS7D01G155500 chr6A 82.822 489 74 7 1047 1530 579439989 579439506 3.230000e-116 429.0
14 TraesCS7D01G155500 chr6A 90.977 133 12 0 371 503 591194430 591194298 3.590000e-41 180.0
15 TraesCS7D01G155500 chr3D 77.246 1213 250 21 2011 3216 283316235 283317428 0.000000e+00 688.0
16 TraesCS7D01G155500 chr3D 98.252 286 4 1 1 285 360864021 360863736 2.430000e-137 499.0
17 TraesCS7D01G155500 chr3B 77.183 1214 249 21 2011 3216 377424465 377425658 0.000000e+00 682.0
18 TraesCS7D01G155500 chr3B 94.502 291 15 1 1 290 131086217 131086507 8.910000e-122 448.0
19 TraesCS7D01G155500 chr3A 77.145 1212 253 19 2011 3216 370239445 370240638 0.000000e+00 682.0
20 TraesCS7D01G155500 chr5D 97.952 293 5 1 1 292 9936902 9936610 1.450000e-139 507.0
21 TraesCS7D01G155500 chrUn 98.270 289 4 1 1 288 94188206 94187918 5.210000e-139 505.0
22 TraesCS7D01G155500 chr1A 96.864 287 8 1 1 286 519968480 519968766 3.160000e-131 479.0
23 TraesCS7D01G155500 chr4A 95.819 287 11 1 1 286 369314448 369314734 3.180000e-126 462.0
24 TraesCS7D01G155500 chr4A 95.122 287 13 1 1 286 584689174 584688888 6.890000e-123 451.0
25 TraesCS7D01G155500 chr4A 94.237 295 16 1 1 294 89938734 89938440 2.480000e-122 449.0
26 TraesCS7D01G155500 chr4A 86.792 159 12 7 352 503 110641499 110641343 7.770000e-38 169.0
27 TraesCS7D01G155500 chr5A 91.912 136 10 1 368 503 422060126 422060260 5.970000e-44 189.0
28 TraesCS7D01G155500 chr2B 90.210 143 8 5 371 510 96231186 96231047 9.980000e-42 182.0
29 TraesCS7D01G155500 chr2B 88.811 143 15 1 361 503 627050318 627050459 1.670000e-39 174.0
30 TraesCS7D01G155500 chr4D 88.235 153 12 2 356 503 399227060 399226909 1.290000e-40 178.0
31 TraesCS7D01G155500 chr2D 88.514 148 11 4 361 504 22770943 22771088 1.670000e-39 174.0
32 TraesCS7D01G155500 chr2A 97.059 34 0 1 3866 3899 725988895 725988863 6.310000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G155500 chr7D 104089320 104093836 4516 True 8342.0 8342 100.0000 1 4517 1 chr7D.!!$R2 4516
1 TraesCS7D01G155500 chr7A 108232821 108239340 6519 True 3238.0 5818 93.0475 286 4517 2 chr7A.!!$R1 4231
2 TraesCS7D01G155500 chr7B 61908326 61911622 3296 True 2780.5 4927 95.3840 501 3830 2 chr7B.!!$R1 3329
3 TraesCS7D01G155500 chr6B 654733221 654735542 2321 True 828.0 1227 83.8600 1047 3253 2 chr6B.!!$R1 2206
4 TraesCS7D01G155500 chr6D 433476353 433478690 2337 True 823.0 1221 83.6090 1047 3253 2 chr6D.!!$R1 2206
5 TraesCS7D01G155500 chr6A 579437666 579439989 2323 True 820.5 1212 83.8110 1047 3253 2 chr6A.!!$R2 2206
6 TraesCS7D01G155500 chr3D 283316235 283317428 1193 False 688.0 688 77.2460 2011 3216 1 chr3D.!!$F1 1205
7 TraesCS7D01G155500 chr3B 377424465 377425658 1193 False 682.0 682 77.1830 2011 3216 1 chr3B.!!$F2 1205
8 TraesCS7D01G155500 chr3A 370239445 370240638 1193 False 682.0 682 77.1450 2011 3216 1 chr3A.!!$F1 1205

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
162 163 0.044092 TGGGGAGCCTGTAATCCAGA 59.956 55.0 0.00 0.00 44.49 3.86 F
238 239 0.105778 GCTAGCAACCTAGGAGCTGG 59.894 60.0 30.59 28.91 41.15 4.85 F
411 417 0.106708 ACGCGCATACATTCATCCCT 59.893 50.0 5.73 0.00 0.00 4.20 F
463 469 0.251386 AGCACCTCCGAGAGACTGAA 60.251 55.0 0.00 0.00 0.00 3.02 F
2001 2171 0.617249 CCTCCTCCTTCTGCTCCAGT 60.617 60.0 0.00 0.00 32.61 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2040 2309 1.078567 GGTCTGCTTGAGCTCCAGG 60.079 63.158 16.04 5.28 42.66 4.45 R
2049 2318 1.830279 ACATGTCCATGGTCTGCTTG 58.170 50.000 12.58 11.04 42.91 4.01 R
2280 2552 0.249073 GCTTCTTCTCCGCGCTGATA 60.249 55.000 5.56 0.00 0.00 2.15 R
2616 2909 2.034104 TCGCCATGTACTCGTAGACT 57.966 50.000 0.00 0.00 0.00 3.24 R
4035 6667 0.034089 ATCAGGGCAGCAACTTACCC 60.034 55.000 0.00 0.00 43.17 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.462109 TGCACAAAGAAATTATGTGTGAAAC 57.538 32.000 14.44 0.00 44.79 2.78
26 27 7.264221 TGCACAAAGAAATTATGTGTGAAACT 58.736 30.769 14.44 0.00 44.79 2.66
27 28 7.763528 TGCACAAAGAAATTATGTGTGAAACTT 59.236 29.630 14.44 0.00 44.79 2.66
28 29 8.268738 GCACAAAGAAATTATGTGTGAAACTTC 58.731 33.333 14.44 0.00 44.79 3.01
29 30 9.299963 CACAAAGAAATTATGTGTGAAACTTCA 57.700 29.630 5.02 0.00 41.67 3.02
30 31 9.520204 ACAAAGAAATTATGTGTGAAACTTCAG 57.480 29.630 0.00 0.00 37.98 3.02
31 32 8.482429 CAAAGAAATTATGTGTGAAACTTCAGC 58.518 33.333 0.00 0.00 37.98 4.26
32 33 7.275888 AGAAATTATGTGTGAAACTTCAGCA 57.724 32.000 0.00 0.00 37.98 4.41
33 34 7.889469 AGAAATTATGTGTGAAACTTCAGCAT 58.111 30.769 11.67 11.67 37.98 3.79
34 35 8.362639 AGAAATTATGTGTGAAACTTCAGCATT 58.637 29.630 12.02 0.38 37.98 3.56
35 36 9.624697 GAAATTATGTGTGAAACTTCAGCATTA 57.375 29.630 12.02 6.49 37.98 1.90
39 40 9.979578 TTATGTGTGAAACTTCAGCATTATTTT 57.020 25.926 12.02 0.00 37.98 1.82
40 41 7.928908 TGTGTGAAACTTCAGCATTATTTTC 57.071 32.000 0.00 0.00 37.98 2.29
41 42 7.487484 TGTGTGAAACTTCAGCATTATTTTCA 58.513 30.769 0.00 0.00 37.98 2.69
42 43 7.648908 TGTGTGAAACTTCAGCATTATTTTCAG 59.351 33.333 3.81 0.00 37.98 3.02
43 44 7.649306 GTGTGAAACTTCAGCATTATTTTCAGT 59.351 33.333 3.81 0.00 37.98 3.41
44 45 8.845227 TGTGAAACTTCAGCATTATTTTCAGTA 58.155 29.630 3.81 0.00 37.98 2.74
45 46 9.677567 GTGAAACTTCAGCATTATTTTCAGTAA 57.322 29.630 3.81 0.00 37.98 2.24
49 50 9.899226 AACTTCAGCATTATTTTCAGTAAACTC 57.101 29.630 0.00 0.00 0.00 3.01
50 51 9.066892 ACTTCAGCATTATTTTCAGTAAACTCA 57.933 29.630 0.00 0.00 0.00 3.41
51 52 9.552114 CTTCAGCATTATTTTCAGTAAACTCAG 57.448 33.333 0.00 0.00 0.00 3.35
52 53 7.530010 TCAGCATTATTTTCAGTAAACTCAGC 58.470 34.615 0.00 0.00 0.00 4.26
53 54 7.174772 TCAGCATTATTTTCAGTAAACTCAGCA 59.825 33.333 0.00 0.00 0.00 4.41
54 55 7.972277 CAGCATTATTTTCAGTAAACTCAGCAT 59.028 33.333 0.00 0.00 0.00 3.79
55 56 9.177608 AGCATTATTTTCAGTAAACTCAGCATA 57.822 29.630 0.00 0.00 0.00 3.14
56 57 9.956720 GCATTATTTTCAGTAAACTCAGCATAT 57.043 29.630 0.00 0.00 0.00 1.78
61 62 9.630098 ATTTTCAGTAAACTCAGCATATTTGTG 57.370 29.630 0.00 0.00 0.00 3.33
62 63 6.182039 TCAGTAAACTCAGCATATTTGTGC 57.818 37.500 0.00 0.00 45.38 4.57
91 92 1.705256 GCACTGTGTTGCATCATTGG 58.295 50.000 9.86 0.00 42.49 3.16
92 93 1.705256 CACTGTGTTGCATCATTGGC 58.295 50.000 0.00 0.00 0.00 4.52
93 94 1.000052 CACTGTGTTGCATCATTGGCA 60.000 47.619 0.00 0.00 40.00 4.92
94 95 1.000060 ACTGTGTTGCATCATTGGCAC 60.000 47.619 0.00 0.00 41.75 5.01
95 96 1.000052 CTGTGTTGCATCATTGGCACA 60.000 47.619 0.00 0.00 41.75 4.57
113 114 3.746045 ACAACAAGTGATCCACGTACT 57.254 42.857 0.00 0.00 39.64 2.73
114 115 3.390135 ACAACAAGTGATCCACGTACTG 58.610 45.455 0.00 0.00 39.64 2.74
115 116 3.069016 ACAACAAGTGATCCACGTACTGA 59.931 43.478 0.00 0.00 39.64 3.41
116 117 3.299340 ACAAGTGATCCACGTACTGAC 57.701 47.619 0.00 0.00 39.64 3.51
117 118 2.029290 ACAAGTGATCCACGTACTGACC 60.029 50.000 0.00 0.00 39.64 4.02
118 119 1.919240 AGTGATCCACGTACTGACCA 58.081 50.000 0.00 0.00 39.64 4.02
119 120 1.819288 AGTGATCCACGTACTGACCAG 59.181 52.381 0.00 0.00 39.64 4.00
120 121 1.544691 GTGATCCACGTACTGACCAGT 59.455 52.381 7.86 7.86 45.02 4.00
121 122 2.751259 GTGATCCACGTACTGACCAGTA 59.249 50.000 5.82 5.82 42.54 2.74
122 123 3.380637 GTGATCCACGTACTGACCAGTAT 59.619 47.826 12.40 0.00 44.73 2.12
123 124 3.630769 TGATCCACGTACTGACCAGTATC 59.369 47.826 12.40 7.14 44.73 2.24
124 125 3.076079 TCCACGTACTGACCAGTATCA 57.924 47.619 12.40 0.00 44.73 2.15
125 126 3.423749 TCCACGTACTGACCAGTATCAA 58.576 45.455 12.40 0.00 44.73 2.57
126 127 3.827876 TCCACGTACTGACCAGTATCAAA 59.172 43.478 12.40 0.00 44.73 2.69
127 128 3.924686 CCACGTACTGACCAGTATCAAAC 59.075 47.826 12.40 2.26 44.73 2.93
128 129 3.924686 CACGTACTGACCAGTATCAAACC 59.075 47.826 12.40 0.00 44.73 3.27
129 130 3.575256 ACGTACTGACCAGTATCAAACCA 59.425 43.478 12.40 0.00 44.73 3.67
130 131 4.174009 CGTACTGACCAGTATCAAACCAG 58.826 47.826 12.40 0.00 44.73 4.00
131 132 3.059352 ACTGACCAGTATCAAACCAGC 57.941 47.619 0.03 0.00 40.43 4.85
132 133 2.639839 ACTGACCAGTATCAAACCAGCT 59.360 45.455 0.03 0.00 40.43 4.24
133 134 3.073062 ACTGACCAGTATCAAACCAGCTT 59.927 43.478 0.03 0.00 40.43 3.74
134 135 3.411446 TGACCAGTATCAAACCAGCTTG 58.589 45.455 0.00 0.00 0.00 4.01
135 136 3.072330 TGACCAGTATCAAACCAGCTTGA 59.928 43.478 0.00 0.00 39.56 3.02
136 137 4.263462 TGACCAGTATCAAACCAGCTTGAT 60.263 41.667 4.16 4.16 45.71 2.57
137 138 4.012374 ACCAGTATCAAACCAGCTTGATG 58.988 43.478 8.58 0.00 44.06 3.07
138 139 4.012374 CCAGTATCAAACCAGCTTGATGT 58.988 43.478 8.58 0.00 44.06 3.06
139 140 4.142534 CCAGTATCAAACCAGCTTGATGTG 60.143 45.833 8.58 6.23 44.06 3.21
140 141 4.456911 CAGTATCAAACCAGCTTGATGTGT 59.543 41.667 8.58 0.00 44.06 3.72
141 142 5.048504 CAGTATCAAACCAGCTTGATGTGTT 60.049 40.000 8.58 0.00 44.06 3.32
142 143 3.713858 TCAAACCAGCTTGATGTGTTG 57.286 42.857 0.00 0.00 30.31 3.33
143 144 3.023119 TCAAACCAGCTTGATGTGTTGT 58.977 40.909 0.00 0.00 30.31 3.32
144 145 3.117794 CAAACCAGCTTGATGTGTTGTG 58.882 45.455 0.00 0.00 0.00 3.33
145 146 1.321474 ACCAGCTTGATGTGTTGTGG 58.679 50.000 0.00 0.00 0.00 4.17
146 147 0.599558 CCAGCTTGATGTGTTGTGGG 59.400 55.000 0.00 0.00 0.00 4.61
147 148 0.599558 CAGCTTGATGTGTTGTGGGG 59.400 55.000 0.00 0.00 0.00 4.96
148 149 0.478072 AGCTTGATGTGTTGTGGGGA 59.522 50.000 0.00 0.00 0.00 4.81
149 150 0.883833 GCTTGATGTGTTGTGGGGAG 59.116 55.000 0.00 0.00 0.00 4.30
150 151 0.883833 CTTGATGTGTTGTGGGGAGC 59.116 55.000 0.00 0.00 0.00 4.70
151 152 0.539438 TTGATGTGTTGTGGGGAGCC 60.539 55.000 0.00 0.00 0.00 4.70
152 153 1.380302 GATGTGTTGTGGGGAGCCT 59.620 57.895 0.00 0.00 0.00 4.58
153 154 0.962356 GATGTGTTGTGGGGAGCCTG 60.962 60.000 0.00 0.00 0.00 4.85
154 155 1.719063 ATGTGTTGTGGGGAGCCTGT 61.719 55.000 0.00 0.00 0.00 4.00
155 156 1.057275 TGTGTTGTGGGGAGCCTGTA 61.057 55.000 0.00 0.00 0.00 2.74
156 157 0.109723 GTGTTGTGGGGAGCCTGTAA 59.890 55.000 0.00 0.00 0.00 2.41
157 158 1.072266 TGTTGTGGGGAGCCTGTAAT 58.928 50.000 0.00 0.00 0.00 1.89
158 159 1.004277 TGTTGTGGGGAGCCTGTAATC 59.996 52.381 0.00 0.00 0.00 1.75
159 160 0.623723 TTGTGGGGAGCCTGTAATCC 59.376 55.000 0.00 0.00 34.64 3.01
160 161 0.548926 TGTGGGGAGCCTGTAATCCA 60.549 55.000 0.00 0.00 37.33 3.41
161 162 0.181350 GTGGGGAGCCTGTAATCCAG 59.819 60.000 0.00 0.00 41.15 3.86
162 163 0.044092 TGGGGAGCCTGTAATCCAGA 59.956 55.000 0.00 0.00 44.49 3.86
163 164 0.761802 GGGGAGCCTGTAATCCAGAG 59.238 60.000 0.00 0.00 44.49 3.35
164 165 1.501582 GGGAGCCTGTAATCCAGAGT 58.498 55.000 0.00 0.00 44.49 3.24
165 166 1.139853 GGGAGCCTGTAATCCAGAGTG 59.860 57.143 0.00 0.00 44.49 3.51
166 167 1.474143 GGAGCCTGTAATCCAGAGTGC 60.474 57.143 0.00 0.00 44.49 4.40
167 168 1.208052 GAGCCTGTAATCCAGAGTGCA 59.792 52.381 0.00 0.00 44.49 4.57
168 169 1.630369 AGCCTGTAATCCAGAGTGCAA 59.370 47.619 0.00 0.00 44.49 4.08
169 170 2.040278 AGCCTGTAATCCAGAGTGCAAA 59.960 45.455 0.00 0.00 44.49 3.68
170 171 2.421424 GCCTGTAATCCAGAGTGCAAAG 59.579 50.000 0.00 0.00 44.49 2.77
171 172 3.679389 CCTGTAATCCAGAGTGCAAAGT 58.321 45.455 0.00 0.00 44.49 2.66
172 173 3.438087 CCTGTAATCCAGAGTGCAAAGTG 59.562 47.826 0.00 0.00 44.49 3.16
173 174 3.411446 TGTAATCCAGAGTGCAAAGTGG 58.589 45.455 3.53 3.53 0.00 4.00
174 175 2.957402 AATCCAGAGTGCAAAGTGGA 57.043 45.000 13.11 13.11 43.23 4.02
175 176 2.486472 ATCCAGAGTGCAAAGTGGAG 57.514 50.000 15.31 0.00 42.35 3.86
176 177 1.131638 TCCAGAGTGCAAAGTGGAGT 58.868 50.000 7.86 0.00 34.03 3.85
177 178 1.490490 TCCAGAGTGCAAAGTGGAGTT 59.510 47.619 7.86 0.00 34.03 3.01
178 179 2.703536 TCCAGAGTGCAAAGTGGAGTTA 59.296 45.455 7.86 0.00 34.03 2.24
179 180 3.070018 CCAGAGTGCAAAGTGGAGTTAG 58.930 50.000 3.82 0.00 31.04 2.34
180 181 3.495100 CCAGAGTGCAAAGTGGAGTTAGT 60.495 47.826 3.82 0.00 31.04 2.24
181 182 4.130118 CAGAGTGCAAAGTGGAGTTAGTT 58.870 43.478 0.00 0.00 0.00 2.24
182 183 4.024556 CAGAGTGCAAAGTGGAGTTAGTTG 60.025 45.833 0.00 0.00 0.00 3.16
183 184 2.618709 AGTGCAAAGTGGAGTTAGTTGC 59.381 45.455 0.00 0.00 43.79 4.17
184 185 1.953686 TGCAAAGTGGAGTTAGTTGCC 59.046 47.619 4.41 0.00 43.05 4.52
185 186 1.069227 GCAAAGTGGAGTTAGTTGCCG 60.069 52.381 0.00 0.00 38.88 5.69
186 187 2.489971 CAAAGTGGAGTTAGTTGCCGA 58.510 47.619 0.00 0.00 0.00 5.54
187 188 2.875933 CAAAGTGGAGTTAGTTGCCGAA 59.124 45.455 0.00 0.00 0.00 4.30
188 189 2.165319 AGTGGAGTTAGTTGCCGAAC 57.835 50.000 0.00 0.00 0.00 3.95
189 190 1.414919 AGTGGAGTTAGTTGCCGAACA 59.585 47.619 0.00 0.00 34.17 3.18
190 191 2.158871 AGTGGAGTTAGTTGCCGAACAA 60.159 45.455 0.00 0.00 34.17 2.83
191 192 2.223377 GTGGAGTTAGTTGCCGAACAAG 59.777 50.000 0.00 0.00 39.50 3.16
192 193 2.158871 TGGAGTTAGTTGCCGAACAAGT 60.159 45.455 4.28 4.28 44.32 3.16
193 194 2.876550 GGAGTTAGTTGCCGAACAAGTT 59.123 45.455 4.17 0.00 42.14 2.66
194 195 3.303791 GGAGTTAGTTGCCGAACAAGTTG 60.304 47.826 0.00 0.00 42.14 3.16
195 196 3.275999 AGTTAGTTGCCGAACAAGTTGT 58.724 40.909 1.64 1.64 42.14 3.32
196 197 3.311596 AGTTAGTTGCCGAACAAGTTGTC 59.688 43.478 9.40 2.39 42.14 3.18
197 198 2.038387 AGTTGCCGAACAAGTTGTCT 57.962 45.000 9.40 0.00 38.89 3.41
198 199 1.670811 AGTTGCCGAACAAGTTGTCTG 59.329 47.619 9.40 4.76 38.89 3.51
199 200 0.380378 TTGCCGAACAAGTTGTCTGC 59.620 50.000 9.40 12.39 33.24 4.26
200 201 0.463654 TGCCGAACAAGTTGTCTGCT 60.464 50.000 9.40 0.00 0.00 4.24
201 202 0.235926 GCCGAACAAGTTGTCTGCTC 59.764 55.000 9.40 2.09 0.00 4.26
202 203 0.868406 CCGAACAAGTTGTCTGCTCC 59.132 55.000 9.40 0.00 0.00 4.70
203 204 1.541233 CCGAACAAGTTGTCTGCTCCT 60.541 52.381 9.40 0.00 0.00 3.69
204 205 1.795286 CGAACAAGTTGTCTGCTCCTC 59.205 52.381 9.40 0.19 0.00 3.71
205 206 1.795286 GAACAAGTTGTCTGCTCCTCG 59.205 52.381 9.40 0.00 0.00 4.63
206 207 0.753262 ACAAGTTGTCTGCTCCTCGT 59.247 50.000 1.64 0.00 0.00 4.18
207 208 1.139058 ACAAGTTGTCTGCTCCTCGTT 59.861 47.619 1.64 0.00 0.00 3.85
208 209 2.213499 CAAGTTGTCTGCTCCTCGTTT 58.787 47.619 0.00 0.00 0.00 3.60
209 210 1.871080 AGTTGTCTGCTCCTCGTTTG 58.129 50.000 0.00 0.00 0.00 2.93
210 211 0.235926 GTTGTCTGCTCCTCGTTTGC 59.764 55.000 0.00 0.00 0.00 3.68
211 212 0.884704 TTGTCTGCTCCTCGTTTGCC 60.885 55.000 0.00 0.00 0.00 4.52
212 213 2.035442 GTCTGCTCCTCGTTTGCCC 61.035 63.158 0.00 0.00 0.00 5.36
213 214 2.217038 TCTGCTCCTCGTTTGCCCT 61.217 57.895 0.00 0.00 0.00 5.19
214 215 2.032528 TGCTCCTCGTTTGCCCTG 59.967 61.111 0.00 0.00 0.00 4.45
215 216 2.032681 GCTCCTCGTTTGCCCTGT 59.967 61.111 0.00 0.00 0.00 4.00
216 217 2.328099 GCTCCTCGTTTGCCCTGTG 61.328 63.158 0.00 0.00 0.00 3.66
217 218 1.672356 CTCCTCGTTTGCCCTGTGG 60.672 63.158 0.00 0.00 0.00 4.17
218 219 2.111999 CTCCTCGTTTGCCCTGTGGA 62.112 60.000 0.00 0.00 0.00 4.02
219 220 1.672356 CCTCGTTTGCCCTGTGGAG 60.672 63.158 0.00 0.00 0.00 3.86
220 221 2.281484 TCGTTTGCCCTGTGGAGC 60.281 61.111 0.00 0.00 0.00 4.70
221 222 2.281761 CGTTTGCCCTGTGGAGCT 60.282 61.111 0.00 0.00 0.00 4.09
222 223 1.003839 CGTTTGCCCTGTGGAGCTA 60.004 57.895 0.00 0.00 0.00 3.32
223 224 1.021390 CGTTTGCCCTGTGGAGCTAG 61.021 60.000 0.00 0.00 0.00 3.42
224 225 1.002134 TTTGCCCTGTGGAGCTAGC 60.002 57.895 6.62 6.62 0.00 3.42
225 226 1.778017 TTTGCCCTGTGGAGCTAGCA 61.778 55.000 18.83 0.00 0.00 3.49
226 227 1.778017 TTGCCCTGTGGAGCTAGCAA 61.778 55.000 18.83 0.00 37.85 3.91
227 228 1.746991 GCCCTGTGGAGCTAGCAAC 60.747 63.158 18.83 12.50 0.00 4.17
228 229 1.078143 CCCTGTGGAGCTAGCAACC 60.078 63.158 18.83 19.29 0.00 3.77
229 230 1.557269 CCCTGTGGAGCTAGCAACCT 61.557 60.000 24.27 3.41 0.00 3.50
230 231 1.195115 CCTGTGGAGCTAGCAACCTA 58.805 55.000 24.27 15.59 0.00 3.08
231 232 1.137872 CCTGTGGAGCTAGCAACCTAG 59.862 57.143 24.27 21.14 43.23 3.02
232 233 1.137872 CTGTGGAGCTAGCAACCTAGG 59.862 57.143 24.27 7.41 41.15 3.02
233 234 1.273041 TGTGGAGCTAGCAACCTAGGA 60.273 52.381 24.27 8.09 41.15 2.94
234 235 1.410882 GTGGAGCTAGCAACCTAGGAG 59.589 57.143 24.27 8.77 41.15 3.69
235 236 0.391228 GGAGCTAGCAACCTAGGAGC 59.609 60.000 17.98 18.63 41.15 4.70
236 237 1.408969 GAGCTAGCAACCTAGGAGCT 58.591 55.000 27.77 27.77 41.15 4.09
237 238 1.068434 GAGCTAGCAACCTAGGAGCTG 59.932 57.143 30.59 23.35 41.15 4.24
238 239 0.105778 GCTAGCAACCTAGGAGCTGG 59.894 60.000 30.59 28.91 41.15 4.85
239 240 0.755686 CTAGCAACCTAGGAGCTGGG 59.244 60.000 30.59 22.32 39.30 4.45
240 241 0.338467 TAGCAACCTAGGAGCTGGGA 59.662 55.000 30.59 16.49 39.30 4.37
241 242 0.980231 AGCAACCTAGGAGCTGGGAG 60.980 60.000 25.52 5.31 35.58 4.30
242 243 1.268283 GCAACCTAGGAGCTGGGAGT 61.268 60.000 17.98 0.00 35.58 3.85
243 244 0.539051 CAACCTAGGAGCTGGGAGTG 59.461 60.000 17.98 0.00 35.58 3.51
244 245 0.618968 AACCTAGGAGCTGGGAGTGG 60.619 60.000 17.98 0.00 35.58 4.00
245 246 1.311403 CCTAGGAGCTGGGAGTGGA 59.689 63.158 1.05 0.00 33.74 4.02
246 247 0.758685 CCTAGGAGCTGGGAGTGGAG 60.759 65.000 1.05 0.00 33.74 3.86
247 248 1.381872 TAGGAGCTGGGAGTGGAGC 60.382 63.158 0.00 0.00 35.28 4.70
249 250 1.381872 GGAGCTGGGAGTGGAGCTA 60.382 63.158 0.00 0.00 45.72 3.32
250 251 0.978146 GGAGCTGGGAGTGGAGCTAA 60.978 60.000 0.00 0.00 45.72 3.09
251 252 0.463620 GAGCTGGGAGTGGAGCTAAG 59.536 60.000 0.00 0.00 45.72 2.18
252 253 0.980231 AGCTGGGAGTGGAGCTAAGG 60.980 60.000 0.00 0.00 43.88 2.69
253 254 0.978146 GCTGGGAGTGGAGCTAAGGA 60.978 60.000 0.00 0.00 32.12 3.36
254 255 1.799933 CTGGGAGTGGAGCTAAGGAT 58.200 55.000 0.00 0.00 0.00 3.24
255 256 1.691434 CTGGGAGTGGAGCTAAGGATC 59.309 57.143 0.00 0.00 0.00 3.36
256 257 1.292242 TGGGAGTGGAGCTAAGGATCT 59.708 52.381 0.00 0.00 0.00 2.75
257 258 1.691434 GGGAGTGGAGCTAAGGATCTG 59.309 57.143 0.00 0.00 0.00 2.90
258 259 2.672098 GGAGTGGAGCTAAGGATCTGA 58.328 52.381 0.00 0.00 0.00 3.27
259 260 2.627699 GGAGTGGAGCTAAGGATCTGAG 59.372 54.545 0.00 0.00 0.00 3.35
260 261 2.627699 GAGTGGAGCTAAGGATCTGAGG 59.372 54.545 0.00 0.00 0.00 3.86
261 262 2.246067 AGTGGAGCTAAGGATCTGAGGA 59.754 50.000 0.00 0.00 0.00 3.71
262 263 2.627699 GTGGAGCTAAGGATCTGAGGAG 59.372 54.545 0.00 0.00 0.00 3.69
263 264 2.246067 TGGAGCTAAGGATCTGAGGAGT 59.754 50.000 0.00 0.00 0.00 3.85
264 265 2.627699 GGAGCTAAGGATCTGAGGAGTG 59.372 54.545 0.00 0.00 0.00 3.51
265 266 2.627699 GAGCTAAGGATCTGAGGAGTGG 59.372 54.545 0.00 0.00 0.00 4.00
266 267 2.246067 AGCTAAGGATCTGAGGAGTGGA 59.754 50.000 0.00 0.00 0.00 4.02
267 268 2.627699 GCTAAGGATCTGAGGAGTGGAG 59.372 54.545 0.00 0.00 0.00 3.86
268 269 2.938428 AAGGATCTGAGGAGTGGAGT 57.062 50.000 0.00 0.00 0.00 3.85
269 270 2.157640 AGGATCTGAGGAGTGGAGTG 57.842 55.000 0.00 0.00 0.00 3.51
270 271 1.643286 AGGATCTGAGGAGTGGAGTGA 59.357 52.381 0.00 0.00 0.00 3.41
271 272 2.043664 AGGATCTGAGGAGTGGAGTGAA 59.956 50.000 0.00 0.00 0.00 3.18
272 273 3.037549 GGATCTGAGGAGTGGAGTGAAT 58.962 50.000 0.00 0.00 0.00 2.57
273 274 4.078922 AGGATCTGAGGAGTGGAGTGAATA 60.079 45.833 0.00 0.00 0.00 1.75
274 275 4.038642 GGATCTGAGGAGTGGAGTGAATAC 59.961 50.000 0.00 0.00 0.00 1.89
275 276 3.017442 TCTGAGGAGTGGAGTGAATACG 58.983 50.000 0.00 0.00 0.00 3.06
276 277 3.017442 CTGAGGAGTGGAGTGAATACGA 58.983 50.000 0.00 0.00 0.00 3.43
277 278 3.427573 TGAGGAGTGGAGTGAATACGAA 58.572 45.455 0.00 0.00 0.00 3.85
278 279 3.192844 TGAGGAGTGGAGTGAATACGAAC 59.807 47.826 0.00 0.00 0.00 3.95
279 280 3.162666 AGGAGTGGAGTGAATACGAACA 58.837 45.455 0.00 0.00 0.00 3.18
280 281 3.769844 AGGAGTGGAGTGAATACGAACAT 59.230 43.478 0.00 0.00 0.00 2.71
281 282 3.865745 GGAGTGGAGTGAATACGAACATG 59.134 47.826 0.00 0.00 0.00 3.21
282 283 3.262420 AGTGGAGTGAATACGAACATGC 58.738 45.455 0.00 0.00 0.00 4.06
283 284 2.351726 GTGGAGTGAATACGAACATGCC 59.648 50.000 0.00 0.00 0.00 4.40
284 285 1.940613 GGAGTGAATACGAACATGCCC 59.059 52.381 0.00 0.00 0.00 5.36
382 388 2.376915 TTTAAACACAGACGCAAGCG 57.623 45.000 13.50 13.50 46.03 4.68
388 394 1.078201 CACAGACGCAAGCGCTCATA 61.078 55.000 12.06 0.00 44.19 2.15
389 395 1.078759 ACAGACGCAAGCGCTCATAC 61.079 55.000 12.06 1.58 44.19 2.39
393 399 1.190323 GACGCAAGCGCTCATACATAC 59.810 52.381 12.06 0.00 44.19 2.39
398 404 3.916439 CGCTCATACATACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
399 405 2.434688 CGCTCATACATACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
400 406 1.613270 CGCTCATACATACGCGCATA 58.387 50.000 5.73 0.00 39.11 3.14
401 407 1.317611 CGCTCATACATACGCGCATAC 59.682 52.381 5.73 0.00 39.11 2.39
402 408 2.324860 GCTCATACATACGCGCATACA 58.675 47.619 5.73 0.00 0.00 2.29
403 409 2.923655 GCTCATACATACGCGCATACAT 59.076 45.455 5.73 0.00 0.00 2.29
404 410 3.367932 GCTCATACATACGCGCATACATT 59.632 43.478 5.73 0.00 0.00 2.71
405 411 4.490959 GCTCATACATACGCGCATACATTC 60.491 45.833 5.73 0.00 0.00 2.67
406 412 4.551388 TCATACATACGCGCATACATTCA 58.449 39.130 5.73 0.00 0.00 2.57
407 413 5.167845 TCATACATACGCGCATACATTCAT 58.832 37.500 5.73 0.00 0.00 2.57
408 414 5.288472 TCATACATACGCGCATACATTCATC 59.712 40.000 5.73 0.00 0.00 2.92
409 415 2.736721 ACATACGCGCATACATTCATCC 59.263 45.455 5.73 0.00 0.00 3.51
410 416 1.790755 TACGCGCATACATTCATCCC 58.209 50.000 5.73 0.00 0.00 3.85
411 417 0.106708 ACGCGCATACATTCATCCCT 59.893 50.000 5.73 0.00 0.00 4.20
412 418 1.343142 ACGCGCATACATTCATCCCTA 59.657 47.619 5.73 0.00 0.00 3.53
413 419 2.028112 ACGCGCATACATTCATCCCTAT 60.028 45.455 5.73 0.00 0.00 2.57
414 420 3.194755 ACGCGCATACATTCATCCCTATA 59.805 43.478 5.73 0.00 0.00 1.31
415 421 4.180817 CGCGCATACATTCATCCCTATAA 58.819 43.478 8.75 0.00 0.00 0.98
416 422 4.268644 CGCGCATACATTCATCCCTATAAG 59.731 45.833 8.75 0.00 0.00 1.73
417 423 4.034510 GCGCATACATTCATCCCTATAAGC 59.965 45.833 0.30 0.00 0.00 3.09
418 424 5.178061 CGCATACATTCATCCCTATAAGCA 58.822 41.667 0.00 0.00 0.00 3.91
419 425 5.063944 CGCATACATTCATCCCTATAAGCAC 59.936 44.000 0.00 0.00 0.00 4.40
420 426 5.939883 GCATACATTCATCCCTATAAGCACA 59.060 40.000 0.00 0.00 0.00 4.57
421 427 6.128172 GCATACATTCATCCCTATAAGCACAC 60.128 42.308 0.00 0.00 0.00 3.82
422 428 5.372343 ACATTCATCCCTATAAGCACACA 57.628 39.130 0.00 0.00 0.00 3.72
423 429 5.126067 ACATTCATCCCTATAAGCACACAC 58.874 41.667 0.00 0.00 0.00 3.82
424 430 4.835284 TTCATCCCTATAAGCACACACA 57.165 40.909 0.00 0.00 0.00 3.72
431 437 1.522668 ATAAGCACACACACGCACAT 58.477 45.000 0.00 0.00 0.00 3.21
437 443 0.320421 ACACACACGCACATCCTACC 60.320 55.000 0.00 0.00 0.00 3.18
451 457 1.133136 TCCTACCCCTATGAGCACCTC 60.133 57.143 0.00 0.00 0.00 3.85
458 464 1.477740 CCTATGAGCACCTCCGAGAGA 60.478 57.143 0.00 0.00 0.00 3.10
463 469 0.251386 AGCACCTCCGAGAGACTGAA 60.251 55.000 0.00 0.00 0.00 3.02
465 471 1.540267 CACCTCCGAGAGACTGAACT 58.460 55.000 0.00 0.00 0.00 3.01
467 473 1.074084 ACCTCCGAGAGACTGAACTGA 59.926 52.381 0.00 0.00 0.00 3.41
498 504 6.539649 TCTTGAGATTTTACAAAGTCACCG 57.460 37.500 0.86 0.00 0.00 4.94
587 593 3.907788 CACATTGTGTATTTGTGTGCTCG 59.092 43.478 8.69 0.00 36.77 5.03
704 718 3.069158 GGCTCAATTCAAATAGCAGCCAT 59.931 43.478 11.76 0.00 43.79 4.40
779 793 4.142902 CGAAATTAAGAGCGCTCCAGAAAA 60.143 41.667 32.94 19.45 0.00 2.29
961 975 1.942657 CATCATCAACCAGGCGTAAGG 59.057 52.381 0.00 0.00 38.28 2.69
962 976 0.981183 TCATCAACCAGGCGTAAGGT 59.019 50.000 0.00 0.00 40.61 3.50
963 977 2.181125 TCATCAACCAGGCGTAAGGTA 58.819 47.619 0.00 0.00 37.07 3.08
964 978 2.093869 TCATCAACCAGGCGTAAGGTAC 60.094 50.000 0.00 0.00 37.07 3.34
990 1004 1.254975 TGAAGGTGAAGCCCGATCGA 61.255 55.000 18.66 0.00 38.26 3.59
2001 2171 0.617249 CCTCCTCCTTCTGCTCCAGT 60.617 60.000 0.00 0.00 32.61 4.00
2280 2552 2.345244 CTGGAGGTGCAGAAGCGT 59.655 61.111 0.00 0.00 46.23 5.07
2505 2798 4.115199 ATCAAGGTGCTCCGGCCC 62.115 66.667 0.00 0.00 39.05 5.80
2589 2882 0.911769 CCAACATGGTGCTCCTCCTA 59.088 55.000 4.81 0.00 31.35 2.94
3321 3617 2.633657 CACAGCAACGTCACAGCC 59.366 61.111 0.00 0.00 0.00 4.85
3373 3670 4.626081 CCCGATCCCGCCATGACC 62.626 72.222 0.00 0.00 0.00 4.02
3391 3691 0.458543 CCACGACCTCCACGAATCTG 60.459 60.000 0.00 0.00 34.70 2.90
3396 3696 0.400213 ACCTCCACGAATCTGGCAAA 59.600 50.000 0.00 0.00 0.00 3.68
3400 3700 0.950836 CCACGAATCTGGCAAACACA 59.049 50.000 0.00 0.00 0.00 3.72
3402 3702 1.603802 CACGAATCTGGCAAACACACT 59.396 47.619 0.00 0.00 0.00 3.55
3447 3752 0.320374 AGGAAGCGAACAACGATCCA 59.680 50.000 0.00 0.00 45.39 3.41
3512 3817 1.014564 CCTCCGAGAAGAACCAACGC 61.015 60.000 0.00 0.00 0.00 4.84
3604 3913 2.198827 AGGGAACATCGAACATGCAA 57.801 45.000 0.00 0.00 0.00 4.08
3605 3914 2.086869 AGGGAACATCGAACATGCAAG 58.913 47.619 0.00 0.00 0.00 4.01
3728 4037 5.181811 CAGTGATTAGACCAAGATTTGTGCA 59.818 40.000 0.00 0.00 0.00 4.57
3843 4153 3.819016 TTTTTGGAGGGCGGTGGGG 62.819 63.158 0.00 0.00 0.00 4.96
3856 4166 0.321919 GGTGGGGAAGGTTCGGTAAC 60.322 60.000 0.00 0.00 34.66 2.50
3899 4209 3.380142 GTCGGCTGATCTTTTGCAAAAA 58.620 40.909 23.92 15.47 0.00 1.94
3900 4210 3.989817 GTCGGCTGATCTTTTGCAAAAAT 59.010 39.130 23.92 18.86 0.00 1.82
3901 4211 4.090498 GTCGGCTGATCTTTTGCAAAAATC 59.910 41.667 23.92 24.40 0.00 2.17
3902 4212 3.368843 CGGCTGATCTTTTGCAAAAATCC 59.631 43.478 23.92 13.54 0.00 3.01
3903 4213 3.368843 GGCTGATCTTTTGCAAAAATCCG 59.631 43.478 23.92 21.89 0.00 4.18
3904 4214 3.368843 GCTGATCTTTTGCAAAAATCCGG 59.631 43.478 23.92 19.10 0.00 5.14
3905 4215 4.808558 CTGATCTTTTGCAAAAATCCGGA 58.191 39.130 23.92 17.38 0.00 5.14
3906 4216 5.207110 TGATCTTTTGCAAAAATCCGGAA 57.793 34.783 23.92 11.40 0.00 4.30
3944 5428 4.654262 ACAGGCTCGGGAAAGAATAGATAA 59.346 41.667 0.00 0.00 0.00 1.75
3945 5429 5.221541 ACAGGCTCGGGAAAGAATAGATAAG 60.222 44.000 0.00 0.00 0.00 1.73
3946 5430 4.284746 AGGCTCGGGAAAGAATAGATAAGG 59.715 45.833 0.00 0.00 0.00 2.69
3947 5431 4.283722 GGCTCGGGAAAGAATAGATAAGGA 59.716 45.833 0.00 0.00 0.00 3.36
3948 5432 5.221661 GGCTCGGGAAAGAATAGATAAGGAA 60.222 44.000 0.00 0.00 0.00 3.36
3949 5433 5.929415 GCTCGGGAAAGAATAGATAAGGAAG 59.071 44.000 0.00 0.00 0.00 3.46
3950 5434 5.855045 TCGGGAAAGAATAGATAAGGAAGC 58.145 41.667 0.00 0.00 0.00 3.86
3951 5435 4.686554 CGGGAAAGAATAGATAAGGAAGCG 59.313 45.833 0.00 0.00 0.00 4.68
3952 5436 5.612351 GGGAAAGAATAGATAAGGAAGCGT 58.388 41.667 0.00 0.00 0.00 5.07
3953 5437 6.516194 CGGGAAAGAATAGATAAGGAAGCGTA 60.516 42.308 0.00 0.00 0.00 4.42
3954 5438 6.869388 GGGAAAGAATAGATAAGGAAGCGTAG 59.131 42.308 0.00 0.00 0.00 3.51
3955 5439 7.255871 GGGAAAGAATAGATAAGGAAGCGTAGA 60.256 40.741 0.00 0.00 0.00 2.59
3956 5440 8.308207 GGAAAGAATAGATAAGGAAGCGTAGAT 58.692 37.037 0.00 0.00 0.00 1.98
3965 5449 3.208884 AAGCGTAGATAGCGGGCCG 62.209 63.158 24.35 24.35 40.04 6.13
4035 6667 6.480320 AGCATTTCTCTTAGTAATAACGCTGG 59.520 38.462 0.00 0.00 0.00 4.85
4042 6674 5.658190 TCTTAGTAATAACGCTGGGGTAAGT 59.342 40.000 0.00 0.00 0.00 2.24
4054 6686 0.034089 GGGTAAGTTGCTGCCCTGAT 60.034 55.000 0.00 0.00 38.12 2.90
4073 6705 1.385528 TGCAAGCAGTCCATATGCAG 58.614 50.000 0.00 0.00 46.31 4.41
4079 6711 1.268899 GCAGTCCATATGCAGGCAATC 59.731 52.381 0.00 0.00 43.31 2.67
4080 6712 2.578786 CAGTCCATATGCAGGCAATCA 58.421 47.619 0.00 0.00 0.00 2.57
4087 6719 5.655974 TCCATATGCAGGCAATCAAACTAAA 59.344 36.000 0.00 0.00 0.00 1.85
4093 6725 5.105432 TGCAGGCAATCAAACTAAATGCATA 60.105 36.000 0.00 0.00 38.73 3.14
4148 6780 2.359900 GAGTTACACATGCAGGAAGGG 58.640 52.381 4.84 0.00 0.00 3.95
4161 6794 0.178932 GGAAGGGAAAAAGGGGCAGT 60.179 55.000 0.00 0.00 0.00 4.40
4176 6809 2.041153 CAGTCAACCAAACAGGCCC 58.959 57.895 0.00 0.00 43.14 5.80
4178 6811 0.188342 AGTCAACCAAACAGGCCCAT 59.812 50.000 0.00 0.00 43.14 4.00
4184 6817 1.580942 CAAACAGGCCCATGTGTCG 59.419 57.895 0.00 0.00 32.52 4.35
4196 6829 2.746277 GTGTCGGATGTGGTGGCC 60.746 66.667 0.00 0.00 0.00 5.36
4228 6861 0.831711 ACCACCCAAGCCAATGGTTC 60.832 55.000 0.00 0.00 42.98 3.62
4249 6882 0.030235 GTCACCCAAGCGACCAAAAC 59.970 55.000 0.00 0.00 0.00 2.43
4253 6886 2.556622 CACCCAAGCGACCAAAACTAAT 59.443 45.455 0.00 0.00 0.00 1.73
4256 6889 3.128068 CCCAAGCGACCAAAACTAATACC 59.872 47.826 0.00 0.00 0.00 2.73
4302 6935 4.389576 CGGTGCGACTGCTTTGGC 62.390 66.667 0.00 0.00 43.34 4.52
4319 6952 0.875059 GGCTTTACTGGTCACACTGC 59.125 55.000 0.00 0.00 0.00 4.40
4327 6960 4.699522 GTCACACTGCCGGGGGAC 62.700 72.222 2.18 0.00 0.00 4.46
4366 6999 1.975680 ACTCGTGTCAAGGGGTACAAT 59.024 47.619 0.00 0.00 0.00 2.71
4374 7007 2.372504 TCAAGGGGTACAATTTCGTCCA 59.627 45.455 0.00 0.00 0.00 4.02
4384 7017 2.712057 ATTTCGTCCAGCAAAAGCTG 57.288 45.000 10.36 10.36 37.54 4.24
4400 7033 3.465990 CTGGTCTAGCCACACCATG 57.534 57.895 1.73 0.00 43.61 3.66
4464 7097 0.698238 AGTGTTGCCTGCCCTAATGA 59.302 50.000 0.00 0.00 0.00 2.57
4468 7101 2.298729 TGTTGCCTGCCCTAATGAAAAC 59.701 45.455 0.00 0.00 0.00 2.43
4487 7120 3.692791 ACCGAAAACTTGAGCTTTCAC 57.307 42.857 7.43 0.00 31.54 3.18
4501 7142 2.575532 CTTTCACTCCAACAGCCTTGA 58.424 47.619 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.763528 AGTTTCACACATAATTTCTTTGTGCAA 59.236 29.630 0.00 0.00 43.51 4.08
1 2 7.264221 AGTTTCACACATAATTTCTTTGTGCA 58.736 30.769 2.41 0.00 43.51 4.57
2 3 7.698836 AGTTTCACACATAATTTCTTTGTGC 57.301 32.000 2.41 0.00 43.51 4.57
3 4 9.299963 TGAAGTTTCACACATAATTTCTTTGTG 57.700 29.630 1.02 1.02 44.85 3.33
4 5 9.520204 CTGAAGTTTCACACATAATTTCTTTGT 57.480 29.630 0.00 0.00 32.90 2.83
5 6 8.482429 GCTGAAGTTTCACACATAATTTCTTTG 58.518 33.333 0.00 0.00 32.90 2.77
6 7 8.196771 TGCTGAAGTTTCACACATAATTTCTTT 58.803 29.630 0.00 0.00 32.90 2.52
7 8 7.715657 TGCTGAAGTTTCACACATAATTTCTT 58.284 30.769 0.00 0.00 32.90 2.52
8 9 7.275888 TGCTGAAGTTTCACACATAATTTCT 57.724 32.000 0.00 0.00 32.90 2.52
9 10 8.524870 AATGCTGAAGTTTCACACATAATTTC 57.475 30.769 6.22 0.00 31.94 2.17
13 14 9.979578 AAAATAATGCTGAAGTTTCACACATAA 57.020 25.926 6.22 0.00 31.94 1.90
14 15 9.624697 GAAAATAATGCTGAAGTTTCACACATA 57.375 29.630 6.22 2.58 31.94 2.29
15 16 8.143193 TGAAAATAATGCTGAAGTTTCACACAT 58.857 29.630 4.91 0.00 31.82 3.21
16 17 7.487484 TGAAAATAATGCTGAAGTTTCACACA 58.513 30.769 4.91 0.00 31.82 3.72
17 18 7.649306 ACTGAAAATAATGCTGAAGTTTCACAC 59.351 33.333 4.91 0.00 32.97 3.82
18 19 7.715657 ACTGAAAATAATGCTGAAGTTTCACA 58.284 30.769 4.91 0.00 32.97 3.58
19 20 9.677567 TTACTGAAAATAATGCTGAAGTTTCAC 57.322 29.630 4.91 0.00 32.97 3.18
23 24 9.899226 GAGTTTACTGAAAATAATGCTGAAGTT 57.101 29.630 0.00 0.00 0.00 2.66
24 25 9.066892 TGAGTTTACTGAAAATAATGCTGAAGT 57.933 29.630 0.00 0.00 0.00 3.01
25 26 9.552114 CTGAGTTTACTGAAAATAATGCTGAAG 57.448 33.333 0.00 0.00 0.00 3.02
26 27 8.023128 GCTGAGTTTACTGAAAATAATGCTGAA 58.977 33.333 0.00 0.00 0.00 3.02
27 28 7.174772 TGCTGAGTTTACTGAAAATAATGCTGA 59.825 33.333 0.00 0.00 0.00 4.26
28 29 7.307694 TGCTGAGTTTACTGAAAATAATGCTG 58.692 34.615 0.00 0.00 0.00 4.41
29 30 7.452880 TGCTGAGTTTACTGAAAATAATGCT 57.547 32.000 0.00 0.00 0.00 3.79
30 31 9.956720 ATATGCTGAGTTTACTGAAAATAATGC 57.043 29.630 0.00 0.00 0.00 3.56
35 36 9.630098 CACAAATATGCTGAGTTTACTGAAAAT 57.370 29.630 0.00 0.00 0.00 1.82
36 37 7.594758 GCACAAATATGCTGAGTTTACTGAAAA 59.405 33.333 0.00 0.00 42.62 2.29
37 38 7.083858 GCACAAATATGCTGAGTTTACTGAAA 58.916 34.615 0.00 0.00 42.62 2.69
38 39 6.206438 TGCACAAATATGCTGAGTTTACTGAA 59.794 34.615 0.00 0.00 46.28 3.02
39 40 5.704978 TGCACAAATATGCTGAGTTTACTGA 59.295 36.000 0.00 0.00 46.28 3.41
40 41 5.941733 TGCACAAATATGCTGAGTTTACTG 58.058 37.500 0.00 0.00 46.28 2.74
41 42 6.764308 ATGCACAAATATGCTGAGTTTACT 57.236 33.333 0.00 0.00 46.28 2.24
42 43 7.816945 AAATGCACAAATATGCTGAGTTTAC 57.183 32.000 0.00 0.00 46.28 2.01
43 44 8.830201 AAAAATGCACAAATATGCTGAGTTTA 57.170 26.923 0.00 0.00 46.28 2.01
44 45 7.733402 AAAAATGCACAAATATGCTGAGTTT 57.267 28.000 0.00 0.00 46.28 2.66
72 73 1.705256 CCAATGATGCAACACAGTGC 58.295 50.000 0.00 0.00 45.15 4.40
73 74 1.000052 TGCCAATGATGCAACACAGTG 60.000 47.619 0.00 5.66 35.40 3.66
74 75 1.000060 GTGCCAATGATGCAACACAGT 60.000 47.619 0.00 0.00 41.06 3.55
75 76 1.000052 TGTGCCAATGATGCAACACAG 60.000 47.619 0.00 0.00 41.06 3.66
76 77 1.038280 TGTGCCAATGATGCAACACA 58.962 45.000 0.00 0.00 41.06 3.72
77 78 1.794116 GTTGTGCCAATGATGCAACAC 59.206 47.619 0.00 0.00 41.06 3.32
78 79 1.411612 TGTTGTGCCAATGATGCAACA 59.588 42.857 0.00 0.00 44.48 3.33
79 80 2.151881 TGTTGTGCCAATGATGCAAC 57.848 45.000 0.00 0.00 41.06 4.17
80 81 2.102757 ACTTGTTGTGCCAATGATGCAA 59.897 40.909 0.00 0.00 41.06 4.08
81 82 1.687660 ACTTGTTGTGCCAATGATGCA 59.312 42.857 0.00 0.00 36.12 3.96
82 83 2.063266 CACTTGTTGTGCCAATGATGC 58.937 47.619 0.00 0.00 40.06 3.91
83 84 3.646611 TCACTTGTTGTGCCAATGATG 57.353 42.857 0.00 0.00 45.81 3.07
84 85 3.194116 GGATCACTTGTTGTGCCAATGAT 59.806 43.478 0.00 0.00 45.81 2.45
85 86 2.557924 GGATCACTTGTTGTGCCAATGA 59.442 45.455 0.00 0.00 45.81 2.57
86 87 2.296752 TGGATCACTTGTTGTGCCAATG 59.703 45.455 0.00 0.00 45.81 2.82
87 88 2.297033 GTGGATCACTTGTTGTGCCAAT 59.703 45.455 0.00 0.00 45.81 3.16
88 89 1.680735 GTGGATCACTTGTTGTGCCAA 59.319 47.619 0.00 0.00 45.81 4.52
89 90 1.317613 GTGGATCACTTGTTGTGCCA 58.682 50.000 0.00 0.00 45.81 4.92
90 91 0.238289 CGTGGATCACTTGTTGTGCC 59.762 55.000 0.00 0.00 45.81 5.01
91 92 0.944386 ACGTGGATCACTTGTTGTGC 59.056 50.000 0.00 0.00 45.81 4.57
93 94 3.069016 TCAGTACGTGGATCACTTGTTGT 59.931 43.478 0.00 0.00 31.34 3.32
94 95 3.428870 GTCAGTACGTGGATCACTTGTTG 59.571 47.826 0.00 0.00 31.34 3.33
95 96 3.554337 GGTCAGTACGTGGATCACTTGTT 60.554 47.826 0.00 0.00 31.34 2.83
96 97 2.029290 GGTCAGTACGTGGATCACTTGT 60.029 50.000 0.00 0.00 31.34 3.16
97 98 2.029380 TGGTCAGTACGTGGATCACTTG 60.029 50.000 0.00 0.00 31.34 3.16
98 99 2.231478 CTGGTCAGTACGTGGATCACTT 59.769 50.000 0.00 0.00 31.34 3.16
99 100 1.819288 CTGGTCAGTACGTGGATCACT 59.181 52.381 0.00 0.00 31.34 3.41
100 101 1.544691 ACTGGTCAGTACGTGGATCAC 59.455 52.381 0.00 0.00 40.43 3.06
101 102 1.919240 ACTGGTCAGTACGTGGATCA 58.081 50.000 0.00 0.00 40.43 2.92
102 103 3.630769 TGATACTGGTCAGTACGTGGATC 59.369 47.826 12.40 7.45 45.61 3.36
103 104 3.628008 TGATACTGGTCAGTACGTGGAT 58.372 45.455 12.40 0.00 45.61 3.41
104 105 3.076079 TGATACTGGTCAGTACGTGGA 57.924 47.619 12.40 0.00 45.61 4.02
105 106 3.861276 TTGATACTGGTCAGTACGTGG 57.139 47.619 12.40 0.00 45.61 4.94
106 107 3.924686 GGTTTGATACTGGTCAGTACGTG 59.075 47.826 12.40 0.00 45.61 4.49
107 108 3.575256 TGGTTTGATACTGGTCAGTACGT 59.425 43.478 12.40 0.00 45.61 3.57
108 109 4.174009 CTGGTTTGATACTGGTCAGTACG 58.826 47.826 12.40 0.00 45.61 3.67
109 110 3.933332 GCTGGTTTGATACTGGTCAGTAC 59.067 47.826 12.40 7.94 45.61 2.73
110 111 3.838317 AGCTGGTTTGATACTGGTCAGTA 59.162 43.478 12.51 12.51 46.68 2.74
111 112 2.639839 AGCTGGTTTGATACTGGTCAGT 59.360 45.455 8.74 8.74 45.02 3.41
112 113 3.340814 AGCTGGTTTGATACTGGTCAG 57.659 47.619 0.00 0.00 0.00 3.51
113 114 3.072330 TCAAGCTGGTTTGATACTGGTCA 59.928 43.478 0.00 0.00 32.39 4.02
114 115 3.674997 TCAAGCTGGTTTGATACTGGTC 58.325 45.455 0.00 0.00 32.39 4.02
115 116 3.788227 TCAAGCTGGTTTGATACTGGT 57.212 42.857 0.00 0.00 32.39 4.00
116 117 4.012374 ACATCAAGCTGGTTTGATACTGG 58.988 43.478 11.22 3.92 43.93 4.00
117 118 4.456911 ACACATCAAGCTGGTTTGATACTG 59.543 41.667 11.22 11.48 43.93 2.74
118 119 4.655963 ACACATCAAGCTGGTTTGATACT 58.344 39.130 11.22 0.00 43.93 2.12
119 120 5.156355 CAACACATCAAGCTGGTTTGATAC 58.844 41.667 11.22 0.00 43.93 2.24
120 121 4.826733 ACAACACATCAAGCTGGTTTGATA 59.173 37.500 11.22 0.00 43.93 2.15
121 122 3.638160 ACAACACATCAAGCTGGTTTGAT 59.362 39.130 6.81 6.81 46.02 2.57
122 123 3.023119 ACAACACATCAAGCTGGTTTGA 58.977 40.909 2.65 2.65 41.00 2.69
123 124 3.117794 CACAACACATCAAGCTGGTTTG 58.882 45.455 0.00 0.00 0.00 2.93
124 125 2.101249 CCACAACACATCAAGCTGGTTT 59.899 45.455 0.00 0.00 0.00 3.27
125 126 1.682854 CCACAACACATCAAGCTGGTT 59.317 47.619 0.00 0.00 0.00 3.67
126 127 1.321474 CCACAACACATCAAGCTGGT 58.679 50.000 0.00 0.00 0.00 4.00
127 128 0.599558 CCCACAACACATCAAGCTGG 59.400 55.000 0.00 0.00 0.00 4.85
128 129 0.599558 CCCCACAACACATCAAGCTG 59.400 55.000 0.00 0.00 0.00 4.24
129 130 0.478072 TCCCCACAACACATCAAGCT 59.522 50.000 0.00 0.00 0.00 3.74
130 131 0.883833 CTCCCCACAACACATCAAGC 59.116 55.000 0.00 0.00 0.00 4.01
131 132 0.883833 GCTCCCCACAACACATCAAG 59.116 55.000 0.00 0.00 0.00 3.02
132 133 0.539438 GGCTCCCCACAACACATCAA 60.539 55.000 0.00 0.00 0.00 2.57
133 134 1.074775 GGCTCCCCACAACACATCA 59.925 57.895 0.00 0.00 0.00 3.07
134 135 0.962356 CAGGCTCCCCACAACACATC 60.962 60.000 0.00 0.00 0.00 3.06
135 136 1.075482 CAGGCTCCCCACAACACAT 59.925 57.895 0.00 0.00 0.00 3.21
136 137 1.057275 TACAGGCTCCCCACAACACA 61.057 55.000 0.00 0.00 0.00 3.72
137 138 0.109723 TTACAGGCTCCCCACAACAC 59.890 55.000 0.00 0.00 0.00 3.32
138 139 1.004277 GATTACAGGCTCCCCACAACA 59.996 52.381 0.00 0.00 0.00 3.33
139 140 1.682087 GGATTACAGGCTCCCCACAAC 60.682 57.143 0.00 0.00 0.00 3.32
140 141 0.623723 GGATTACAGGCTCCCCACAA 59.376 55.000 0.00 0.00 0.00 3.33
141 142 0.548926 TGGATTACAGGCTCCCCACA 60.549 55.000 0.00 0.00 0.00 4.17
142 143 0.181350 CTGGATTACAGGCTCCCCAC 59.819 60.000 0.00 0.00 43.70 4.61
143 144 2.620234 CTGGATTACAGGCTCCCCA 58.380 57.895 0.00 0.00 43.70 4.96
152 153 3.072330 TCCACTTTGCACTCTGGATTACA 59.928 43.478 1.94 0.00 0.00 2.41
153 154 3.674997 TCCACTTTGCACTCTGGATTAC 58.325 45.455 1.94 0.00 0.00 1.89
154 155 3.327757 ACTCCACTTTGCACTCTGGATTA 59.672 43.478 5.99 0.00 32.27 1.75
155 156 2.107204 ACTCCACTTTGCACTCTGGATT 59.893 45.455 5.99 0.00 32.27 3.01
156 157 1.701847 ACTCCACTTTGCACTCTGGAT 59.298 47.619 5.99 0.00 32.27 3.41
157 158 1.131638 ACTCCACTTTGCACTCTGGA 58.868 50.000 5.51 5.51 0.00 3.86
158 159 1.972872 AACTCCACTTTGCACTCTGG 58.027 50.000 0.00 0.00 0.00 3.86
159 160 3.733337 ACTAACTCCACTTTGCACTCTG 58.267 45.455 0.00 0.00 0.00 3.35
160 161 4.130118 CAACTAACTCCACTTTGCACTCT 58.870 43.478 0.00 0.00 0.00 3.24
161 162 3.304057 GCAACTAACTCCACTTTGCACTC 60.304 47.826 0.00 0.00 41.77 3.51
162 163 2.618709 GCAACTAACTCCACTTTGCACT 59.381 45.455 0.00 0.00 41.77 4.40
163 164 2.287608 GGCAACTAACTCCACTTTGCAC 60.288 50.000 6.91 0.00 43.54 4.57
164 165 1.953686 GGCAACTAACTCCACTTTGCA 59.046 47.619 6.91 0.00 43.54 4.08
165 166 1.069227 CGGCAACTAACTCCACTTTGC 60.069 52.381 0.00 0.00 41.50 3.68
166 167 2.489971 TCGGCAACTAACTCCACTTTG 58.510 47.619 0.00 0.00 0.00 2.77
167 168 2.876550 GTTCGGCAACTAACTCCACTTT 59.123 45.455 0.00 0.00 39.08 2.66
168 169 2.158871 TGTTCGGCAACTAACTCCACTT 60.159 45.455 0.00 0.00 42.43 3.16
169 170 1.414919 TGTTCGGCAACTAACTCCACT 59.585 47.619 0.00 0.00 42.43 4.00
170 171 1.873698 TGTTCGGCAACTAACTCCAC 58.126 50.000 0.00 0.00 42.43 4.02
171 172 2.158871 ACTTGTTCGGCAACTAACTCCA 60.159 45.455 0.00 0.00 42.43 3.86
172 173 2.490991 ACTTGTTCGGCAACTAACTCC 58.509 47.619 0.00 0.00 42.43 3.85
173 174 3.311596 ACAACTTGTTCGGCAACTAACTC 59.688 43.478 0.00 0.00 42.43 3.01
174 175 3.275999 ACAACTTGTTCGGCAACTAACT 58.724 40.909 0.00 0.00 42.43 2.24
175 176 3.311596 AGACAACTTGTTCGGCAACTAAC 59.688 43.478 0.00 0.00 42.30 2.34
176 177 3.311322 CAGACAACTTGTTCGGCAACTAA 59.689 43.478 0.00 0.00 33.17 2.24
177 178 2.869801 CAGACAACTTGTTCGGCAACTA 59.130 45.455 0.00 0.00 33.17 2.24
178 179 1.670811 CAGACAACTTGTTCGGCAACT 59.329 47.619 0.00 0.00 33.17 3.16
179 180 1.859998 GCAGACAACTTGTTCGGCAAC 60.860 52.381 0.00 0.00 32.90 4.17
180 181 0.380378 GCAGACAACTTGTTCGGCAA 59.620 50.000 0.00 0.00 35.50 4.52
181 182 0.463654 AGCAGACAACTTGTTCGGCA 60.464 50.000 14.13 0.00 0.00 5.69
182 183 0.235926 GAGCAGACAACTTGTTCGGC 59.764 55.000 0.00 2.82 0.00 5.54
183 184 0.868406 GGAGCAGACAACTTGTTCGG 59.132 55.000 0.00 0.00 0.00 4.30
184 185 1.795286 GAGGAGCAGACAACTTGTTCG 59.205 52.381 0.00 0.00 0.00 3.95
185 186 1.795286 CGAGGAGCAGACAACTTGTTC 59.205 52.381 0.00 0.00 0.00 3.18
186 187 1.139058 ACGAGGAGCAGACAACTTGTT 59.861 47.619 0.00 0.00 0.00 2.83
187 188 0.753262 ACGAGGAGCAGACAACTTGT 59.247 50.000 0.00 0.00 0.00 3.16
188 189 1.871080 AACGAGGAGCAGACAACTTG 58.129 50.000 0.00 0.00 0.00 3.16
189 190 2.213499 CAAACGAGGAGCAGACAACTT 58.787 47.619 0.00 0.00 0.00 2.66
190 191 1.871080 CAAACGAGGAGCAGACAACT 58.129 50.000 0.00 0.00 0.00 3.16
191 192 0.235926 GCAAACGAGGAGCAGACAAC 59.764 55.000 0.00 0.00 0.00 3.32
192 193 0.884704 GGCAAACGAGGAGCAGACAA 60.885 55.000 0.00 0.00 0.00 3.18
193 194 1.301716 GGCAAACGAGGAGCAGACA 60.302 57.895 0.00 0.00 0.00 3.41
194 195 2.035442 GGGCAAACGAGGAGCAGAC 61.035 63.158 0.00 0.00 0.00 3.51
195 196 2.217038 AGGGCAAACGAGGAGCAGA 61.217 57.895 0.00 0.00 0.00 4.26
196 197 2.037136 CAGGGCAAACGAGGAGCAG 61.037 63.158 0.00 0.00 0.00 4.24
197 198 2.032528 CAGGGCAAACGAGGAGCA 59.967 61.111 0.00 0.00 0.00 4.26
198 199 2.032681 ACAGGGCAAACGAGGAGC 59.967 61.111 0.00 0.00 0.00 4.70
199 200 1.672356 CCACAGGGCAAACGAGGAG 60.672 63.158 0.00 0.00 0.00 3.69
200 201 2.111999 CTCCACAGGGCAAACGAGGA 62.112 60.000 0.00 0.00 0.00 3.71
201 202 1.672356 CTCCACAGGGCAAACGAGG 60.672 63.158 0.00 0.00 0.00 4.63
202 203 2.328099 GCTCCACAGGGCAAACGAG 61.328 63.158 0.00 0.00 0.00 4.18
203 204 1.476845 TAGCTCCACAGGGCAAACGA 61.477 55.000 0.00 0.00 0.00 3.85
204 205 1.003839 TAGCTCCACAGGGCAAACG 60.004 57.895 0.00 0.00 0.00 3.60
205 206 1.308783 GCTAGCTCCACAGGGCAAAC 61.309 60.000 7.70 0.00 0.00 2.93
206 207 1.002134 GCTAGCTCCACAGGGCAAA 60.002 57.895 7.70 0.00 0.00 3.68
207 208 1.778017 TTGCTAGCTCCACAGGGCAA 61.778 55.000 17.23 0.00 37.35 4.52
208 209 2.223443 TTGCTAGCTCCACAGGGCA 61.223 57.895 17.23 0.00 0.00 5.36
209 210 1.746991 GTTGCTAGCTCCACAGGGC 60.747 63.158 17.23 0.00 0.00 5.19
210 211 1.078143 GGTTGCTAGCTCCACAGGG 60.078 63.158 17.23 0.00 0.00 4.45
211 212 1.137872 CTAGGTTGCTAGCTCCACAGG 59.862 57.143 23.86 11.61 33.36 4.00
212 213 1.137872 CCTAGGTTGCTAGCTCCACAG 59.862 57.143 23.86 19.77 33.36 3.66
213 214 1.195115 CCTAGGTTGCTAGCTCCACA 58.805 55.000 23.86 14.07 33.36 4.17
214 215 1.410882 CTCCTAGGTTGCTAGCTCCAC 59.589 57.143 23.86 15.00 33.36 4.02
215 216 1.781786 CTCCTAGGTTGCTAGCTCCA 58.218 55.000 23.86 13.22 33.36 3.86
216 217 0.391228 GCTCCTAGGTTGCTAGCTCC 59.609 60.000 17.23 17.44 33.36 4.70
217 218 1.068434 CAGCTCCTAGGTTGCTAGCTC 59.932 57.143 24.05 9.00 41.44 4.09
218 219 1.118838 CAGCTCCTAGGTTGCTAGCT 58.881 55.000 24.05 19.78 44.08 3.32
219 220 0.105778 CCAGCTCCTAGGTTGCTAGC 59.894 60.000 24.05 18.13 35.05 3.42
220 221 0.755686 CCCAGCTCCTAGGTTGCTAG 59.244 60.000 24.05 19.03 35.05 3.42
221 222 0.338467 TCCCAGCTCCTAGGTTGCTA 59.662 55.000 24.05 11.92 35.05 3.49
222 223 0.980231 CTCCCAGCTCCTAGGTTGCT 60.980 60.000 20.72 20.72 37.56 3.91
223 224 1.268283 ACTCCCAGCTCCTAGGTTGC 61.268 60.000 17.58 17.58 0.00 4.17
224 225 0.539051 CACTCCCAGCTCCTAGGTTG 59.461 60.000 9.08 6.22 0.00 3.77
225 226 0.618968 CCACTCCCAGCTCCTAGGTT 60.619 60.000 9.08 0.00 0.00 3.50
226 227 1.002274 CCACTCCCAGCTCCTAGGT 59.998 63.158 9.08 0.00 0.00 3.08
227 228 0.758685 CTCCACTCCCAGCTCCTAGG 60.759 65.000 0.82 0.82 0.00 3.02
228 229 1.398958 GCTCCACTCCCAGCTCCTAG 61.399 65.000 0.00 0.00 32.48 3.02
229 230 1.381872 GCTCCACTCCCAGCTCCTA 60.382 63.158 0.00 0.00 32.48 2.94
230 231 1.879927 TAGCTCCACTCCCAGCTCCT 61.880 60.000 0.00 0.00 42.60 3.69
231 232 0.978146 TTAGCTCCACTCCCAGCTCC 60.978 60.000 0.00 0.00 42.60 4.70
232 233 0.463620 CTTAGCTCCACTCCCAGCTC 59.536 60.000 0.00 0.00 42.60 4.09
234 235 0.978146 TCCTTAGCTCCACTCCCAGC 60.978 60.000 0.00 0.00 35.73 4.85
235 236 1.691434 GATCCTTAGCTCCACTCCCAG 59.309 57.143 0.00 0.00 0.00 4.45
236 237 1.292242 AGATCCTTAGCTCCACTCCCA 59.708 52.381 0.00 0.00 0.00 4.37
237 238 1.691434 CAGATCCTTAGCTCCACTCCC 59.309 57.143 0.00 0.00 0.00 4.30
238 239 2.627699 CTCAGATCCTTAGCTCCACTCC 59.372 54.545 0.00 0.00 0.00 3.85
239 240 2.627699 CCTCAGATCCTTAGCTCCACTC 59.372 54.545 0.00 0.00 0.00 3.51
240 241 2.246067 TCCTCAGATCCTTAGCTCCACT 59.754 50.000 0.00 0.00 0.00 4.00
241 242 2.627699 CTCCTCAGATCCTTAGCTCCAC 59.372 54.545 0.00 0.00 0.00 4.02
242 243 2.246067 ACTCCTCAGATCCTTAGCTCCA 59.754 50.000 0.00 0.00 0.00 3.86
243 244 2.627699 CACTCCTCAGATCCTTAGCTCC 59.372 54.545 0.00 0.00 0.00 4.70
244 245 2.627699 CCACTCCTCAGATCCTTAGCTC 59.372 54.545 0.00 0.00 0.00 4.09
245 246 2.246067 TCCACTCCTCAGATCCTTAGCT 59.754 50.000 0.00 0.00 0.00 3.32
246 247 2.627699 CTCCACTCCTCAGATCCTTAGC 59.372 54.545 0.00 0.00 0.00 3.09
247 248 3.636300 CACTCCACTCCTCAGATCCTTAG 59.364 52.174 0.00 0.00 0.00 2.18
248 249 3.269643 TCACTCCACTCCTCAGATCCTTA 59.730 47.826 0.00 0.00 0.00 2.69
249 250 2.043664 TCACTCCACTCCTCAGATCCTT 59.956 50.000 0.00 0.00 0.00 3.36
250 251 1.643286 TCACTCCACTCCTCAGATCCT 59.357 52.381 0.00 0.00 0.00 3.24
251 252 2.151502 TCACTCCACTCCTCAGATCC 57.848 55.000 0.00 0.00 0.00 3.36
252 253 4.261405 CGTATTCACTCCACTCCTCAGATC 60.261 50.000 0.00 0.00 0.00 2.75
253 254 3.634448 CGTATTCACTCCACTCCTCAGAT 59.366 47.826 0.00 0.00 0.00 2.90
254 255 3.017442 CGTATTCACTCCACTCCTCAGA 58.983 50.000 0.00 0.00 0.00 3.27
255 256 3.017442 TCGTATTCACTCCACTCCTCAG 58.983 50.000 0.00 0.00 0.00 3.35
256 257 3.081710 TCGTATTCACTCCACTCCTCA 57.918 47.619 0.00 0.00 0.00 3.86
257 258 3.192844 TGTTCGTATTCACTCCACTCCTC 59.807 47.826 0.00 0.00 0.00 3.71
258 259 3.162666 TGTTCGTATTCACTCCACTCCT 58.837 45.455 0.00 0.00 0.00 3.69
259 260 3.587797 TGTTCGTATTCACTCCACTCC 57.412 47.619 0.00 0.00 0.00 3.85
260 261 3.307242 GCATGTTCGTATTCACTCCACTC 59.693 47.826 0.00 0.00 0.00 3.51
261 262 3.262420 GCATGTTCGTATTCACTCCACT 58.738 45.455 0.00 0.00 0.00 4.00
262 263 2.351726 GGCATGTTCGTATTCACTCCAC 59.648 50.000 0.00 0.00 0.00 4.02
263 264 2.627945 GGCATGTTCGTATTCACTCCA 58.372 47.619 0.00 0.00 0.00 3.86
264 265 1.940613 GGGCATGTTCGTATTCACTCC 59.059 52.381 0.00 0.00 0.00 3.85
265 266 2.906354 AGGGCATGTTCGTATTCACTC 58.094 47.619 0.00 0.00 0.00 3.51
266 267 4.081087 ACTTAGGGCATGTTCGTATTCACT 60.081 41.667 0.00 0.00 0.00 3.41
267 268 4.034048 CACTTAGGGCATGTTCGTATTCAC 59.966 45.833 0.00 0.00 0.00 3.18
268 269 4.188462 CACTTAGGGCATGTTCGTATTCA 58.812 43.478 0.00 0.00 0.00 2.57
269 270 4.189231 ACACTTAGGGCATGTTCGTATTC 58.811 43.478 0.00 0.00 0.00 1.75
270 271 4.189231 GACACTTAGGGCATGTTCGTATT 58.811 43.478 0.00 0.00 0.00 1.89
271 272 3.196901 TGACACTTAGGGCATGTTCGTAT 59.803 43.478 0.00 0.00 0.00 3.06
272 273 2.563620 TGACACTTAGGGCATGTTCGTA 59.436 45.455 0.00 0.00 0.00 3.43
273 274 1.346395 TGACACTTAGGGCATGTTCGT 59.654 47.619 0.00 0.00 0.00 3.85
274 275 1.732259 GTGACACTTAGGGCATGTTCG 59.268 52.381 0.00 0.00 0.00 3.95
275 276 3.059352 AGTGACACTTAGGGCATGTTC 57.941 47.619 1.07 0.00 0.00 3.18
276 277 4.634012 TTAGTGACACTTAGGGCATGTT 57.366 40.909 14.50 0.00 0.00 2.71
277 278 4.844349 ATTAGTGACACTTAGGGCATGT 57.156 40.909 14.50 0.00 0.00 3.21
278 279 6.823689 ACTAAATTAGTGACACTTAGGGCATG 59.176 38.462 14.50 1.16 37.69 4.06
279 280 6.958767 ACTAAATTAGTGACACTTAGGGCAT 58.041 36.000 14.50 0.00 37.69 4.40
280 281 6.368779 ACTAAATTAGTGACACTTAGGGCA 57.631 37.500 14.50 0.00 37.69 5.36
373 379 1.190323 GTATGTATGAGCGCTTGCGTC 59.810 52.381 13.26 12.36 45.69 5.19
376 382 0.111089 GCGTATGTATGAGCGCTTGC 60.111 55.000 13.26 0.00 45.48 4.01
382 388 2.324860 TGTATGCGCGTATGTATGAGC 58.675 47.619 20.45 0.00 38.31 4.26
388 394 2.736721 GGATGAATGTATGCGCGTATGT 59.263 45.455 20.45 2.87 0.00 2.29
389 395 2.094258 GGGATGAATGTATGCGCGTATG 59.906 50.000 20.45 0.00 0.00 2.39
393 399 2.078849 TAGGGATGAATGTATGCGCG 57.921 50.000 0.00 0.00 0.00 6.86
395 401 5.063944 GTGCTTATAGGGATGAATGTATGCG 59.936 44.000 0.00 0.00 0.00 4.73
396 402 5.939883 TGTGCTTATAGGGATGAATGTATGC 59.060 40.000 0.00 0.00 0.00 3.14
397 403 6.936335 TGTGTGCTTATAGGGATGAATGTATG 59.064 38.462 0.00 0.00 0.00 2.39
398 404 6.936900 GTGTGTGCTTATAGGGATGAATGTAT 59.063 38.462 0.00 0.00 0.00 2.29
399 405 6.126911 TGTGTGTGCTTATAGGGATGAATGTA 60.127 38.462 0.00 0.00 0.00 2.29
400 406 5.126067 GTGTGTGCTTATAGGGATGAATGT 58.874 41.667 0.00 0.00 0.00 2.71
401 407 5.008019 GTGTGTGTGCTTATAGGGATGAATG 59.992 44.000 0.00 0.00 0.00 2.67
402 408 5.126067 GTGTGTGTGCTTATAGGGATGAAT 58.874 41.667 0.00 0.00 0.00 2.57
403 409 4.513442 GTGTGTGTGCTTATAGGGATGAA 58.487 43.478 0.00 0.00 0.00 2.57
404 410 3.430236 CGTGTGTGTGCTTATAGGGATGA 60.430 47.826 0.00 0.00 0.00 2.92
405 411 2.866156 CGTGTGTGTGCTTATAGGGATG 59.134 50.000 0.00 0.00 0.00 3.51
406 412 2.741878 GCGTGTGTGTGCTTATAGGGAT 60.742 50.000 0.00 0.00 0.00 3.85
407 413 1.404986 GCGTGTGTGTGCTTATAGGGA 60.405 52.381 0.00 0.00 0.00 4.20
408 414 1.006832 GCGTGTGTGTGCTTATAGGG 58.993 55.000 0.00 0.00 0.00 3.53
409 415 1.393539 GTGCGTGTGTGTGCTTATAGG 59.606 52.381 0.00 0.00 0.00 2.57
410 416 2.065512 TGTGCGTGTGTGTGCTTATAG 58.934 47.619 0.00 0.00 0.00 1.31
411 417 2.156343 TGTGCGTGTGTGTGCTTATA 57.844 45.000 0.00 0.00 0.00 0.98
412 418 1.464608 GATGTGCGTGTGTGTGCTTAT 59.535 47.619 0.00 0.00 0.00 1.73
413 419 0.865111 GATGTGCGTGTGTGTGCTTA 59.135 50.000 0.00 0.00 0.00 3.09
414 420 1.648720 GATGTGCGTGTGTGTGCTT 59.351 52.632 0.00 0.00 0.00 3.91
415 421 2.253758 GGATGTGCGTGTGTGTGCT 61.254 57.895 0.00 0.00 0.00 4.40
416 422 0.948623 TAGGATGTGCGTGTGTGTGC 60.949 55.000 0.00 0.00 0.00 4.57
417 423 0.790207 GTAGGATGTGCGTGTGTGTG 59.210 55.000 0.00 0.00 0.00 3.82
418 424 0.320421 GGTAGGATGTGCGTGTGTGT 60.320 55.000 0.00 0.00 0.00 3.72
419 425 1.019278 GGGTAGGATGTGCGTGTGTG 61.019 60.000 0.00 0.00 0.00 3.82
420 426 1.295423 GGGTAGGATGTGCGTGTGT 59.705 57.895 0.00 0.00 0.00 3.72
421 427 1.449601 GGGGTAGGATGTGCGTGTG 60.450 63.158 0.00 0.00 0.00 3.82
422 428 0.324923 TAGGGGTAGGATGTGCGTGT 60.325 55.000 0.00 0.00 0.00 4.49
423 429 1.048601 ATAGGGGTAGGATGTGCGTG 58.951 55.000 0.00 0.00 0.00 5.34
424 430 1.048601 CATAGGGGTAGGATGTGCGT 58.951 55.000 0.00 0.00 0.00 5.24
431 437 0.941963 AGGTGCTCATAGGGGTAGGA 59.058 55.000 0.00 0.00 0.00 2.94
437 443 0.468214 TCTCGGAGGTGCTCATAGGG 60.468 60.000 4.96 0.00 31.08 3.53
451 457 4.336713 TGATATGTCAGTTCAGTCTCTCGG 59.663 45.833 0.00 0.00 0.00 4.63
458 464 7.415592 TCTCAAGATGATATGTCAGTTCAGT 57.584 36.000 0.00 0.00 37.87 3.41
495 501 5.945310 TCAGTATTACATACTCCCTACGGT 58.055 41.667 0.00 0.00 43.93 4.83
587 593 8.434733 AAACTAGAAAATAGGAAAGGATACGC 57.565 34.615 0.00 0.00 46.39 4.42
949 963 2.105766 CCTTAGTACCTTACGCCTGGT 58.894 52.381 0.00 0.00 40.12 4.00
961 975 4.001652 GGCTTCACCTTCAACCTTAGTAC 58.998 47.826 0.00 0.00 34.51 2.73
962 976 3.008704 GGGCTTCACCTTCAACCTTAGTA 59.991 47.826 0.00 0.00 39.10 1.82
963 977 2.224793 GGGCTTCACCTTCAACCTTAGT 60.225 50.000 0.00 0.00 39.10 2.24
964 978 2.437413 GGGCTTCACCTTCAACCTTAG 58.563 52.381 0.00 0.00 39.10 2.18
990 1004 2.194212 CCTCCCCATCGATCGACGT 61.194 63.158 22.06 1.89 43.13 4.34
1035 1049 3.467226 GGGTAGCCCAGCTGCGTA 61.467 66.667 8.66 0.00 44.65 4.42
1449 1463 2.618053 CCCTTGTTGATGACGTAGACC 58.382 52.381 0.00 0.00 0.00 3.85
2001 2171 3.295304 CTCCACGTCGTCCATGCCA 62.295 63.158 0.00 0.00 0.00 4.92
2040 2309 1.078567 GGTCTGCTTGAGCTCCAGG 60.079 63.158 16.04 5.28 42.66 4.45
2049 2318 1.830279 ACATGTCCATGGTCTGCTTG 58.170 50.000 12.58 11.04 42.91 4.01
2280 2552 0.249073 GCTTCTTCTCCGCGCTGATA 60.249 55.000 5.56 0.00 0.00 2.15
2616 2909 2.034104 TCGCCATGTACTCGTAGACT 57.966 50.000 0.00 0.00 0.00 3.24
3373 3670 0.458543 CCAGATTCGTGGAGGTCGTG 60.459 60.000 0.00 0.00 40.44 4.35
3391 3691 2.095059 CAGATTAGCCAGTGTGTTTGCC 60.095 50.000 0.00 0.00 0.00 4.52
3396 3696 2.573462 ACATCCAGATTAGCCAGTGTGT 59.427 45.455 0.00 0.00 0.00 3.72
3400 3700 4.574674 TTTCACATCCAGATTAGCCAGT 57.425 40.909 0.00 0.00 0.00 4.00
3402 3702 6.632909 CAAATTTTCACATCCAGATTAGCCA 58.367 36.000 0.00 0.00 0.00 4.75
3543 3852 1.145377 ACCAAGACGTCCACACCAC 59.855 57.895 13.01 0.00 0.00 4.16
3544 3853 1.145156 CACCAAGACGTCCACACCA 59.855 57.895 13.01 0.00 0.00 4.17
3545 3854 2.251642 GCACCAAGACGTCCACACC 61.252 63.158 13.01 0.00 0.00 4.16
3546 3855 0.814010 AAGCACCAAGACGTCCACAC 60.814 55.000 13.01 0.00 0.00 3.82
3547 3856 0.813610 CAAGCACCAAGACGTCCACA 60.814 55.000 13.01 0.00 0.00 4.17
3604 3913 3.441572 CACGATTTGAAAGGCCATCTTCT 59.558 43.478 5.01 0.00 33.94 2.85
3605 3914 3.191371 ACACGATTTGAAAGGCCATCTTC 59.809 43.478 5.01 5.34 33.94 2.87
3728 4037 5.049405 CGACAGCTTGTACAAGGAGATTTTT 60.049 40.000 31.42 3.73 38.80 1.94
3837 4147 0.321919 GTTACCGAACCTTCCCCACC 60.322 60.000 0.00 0.00 0.00 4.61
3843 4153 1.804601 CCCACTGTTACCGAACCTTC 58.195 55.000 0.00 0.00 34.38 3.46
3851 4161 2.175035 TAGCACGGCCCACTGTTACC 62.175 60.000 0.00 0.00 31.05 2.85
3899 4209 0.753262 CCCATCGTCTTCTTCCGGAT 59.247 55.000 4.15 0.00 0.00 4.18
3900 4210 1.956629 GCCCATCGTCTTCTTCCGGA 61.957 60.000 0.00 0.00 0.00 5.14
3901 4211 1.521681 GCCCATCGTCTTCTTCCGG 60.522 63.158 0.00 0.00 0.00 5.14
3902 4212 1.878522 CGCCCATCGTCTTCTTCCG 60.879 63.158 0.00 0.00 0.00 4.30
3903 4213 0.806492 GTCGCCCATCGTCTTCTTCC 60.806 60.000 0.00 0.00 39.67 3.46
3904 4214 0.108804 TGTCGCCCATCGTCTTCTTC 60.109 55.000 0.00 0.00 39.67 2.87
3905 4215 0.108615 CTGTCGCCCATCGTCTTCTT 60.109 55.000 0.00 0.00 39.67 2.52
3906 4216 1.513158 CTGTCGCCCATCGTCTTCT 59.487 57.895 0.00 0.00 39.67 2.85
3920 5404 2.431057 TCTATTCTTTCCCGAGCCTGTC 59.569 50.000 0.00 0.00 0.00 3.51
3944 5428 1.807495 GCCCGCTATCTACGCTTCCT 61.807 60.000 0.00 0.00 0.00 3.36
3945 5429 1.373121 GCCCGCTATCTACGCTTCC 60.373 63.158 0.00 0.00 0.00 3.46
3946 5430 1.373121 GGCCCGCTATCTACGCTTC 60.373 63.158 0.00 0.00 0.00 3.86
3947 5431 2.735237 GGCCCGCTATCTACGCTT 59.265 61.111 0.00 0.00 0.00 4.68
3948 5432 3.671411 CGGCCCGCTATCTACGCT 61.671 66.667 0.00 0.00 0.00 5.07
3949 5433 1.930908 ATACGGCCCGCTATCTACGC 61.931 60.000 1.23 0.00 0.00 4.42
3950 5434 0.524862 AATACGGCCCGCTATCTACG 59.475 55.000 1.23 0.00 0.00 3.51
3951 5435 1.403780 CCAATACGGCCCGCTATCTAC 60.404 57.143 1.23 0.00 0.00 2.59
3952 5436 0.892755 CCAATACGGCCCGCTATCTA 59.107 55.000 1.23 0.00 0.00 1.98
3953 5437 1.671742 CCAATACGGCCCGCTATCT 59.328 57.895 1.23 0.00 0.00 1.98
3954 5438 1.375523 CCCAATACGGCCCGCTATC 60.376 63.158 1.23 0.00 0.00 2.08
3955 5439 2.747686 CCCAATACGGCCCGCTAT 59.252 61.111 1.23 0.00 0.00 2.97
3956 5440 3.552384 CCCCAATACGGCCCGCTA 61.552 66.667 1.23 0.00 0.00 4.26
3965 5449 1.296727 GCTACGCTTGTCCCCAATAC 58.703 55.000 0.00 0.00 0.00 1.89
3977 5461 2.593346 CTGATCTTTCAGGCTACGCT 57.407 50.000 0.00 0.00 44.78 5.07
3986 5470 1.982612 CTCACGCGACTGATCTTTCA 58.017 50.000 15.93 0.00 0.00 2.69
3987 5471 0.642800 GCTCACGCGACTGATCTTTC 59.357 55.000 15.93 0.00 0.00 2.62
3988 5472 0.038251 TGCTCACGCGACTGATCTTT 60.038 50.000 15.93 0.00 39.65 2.52
4000 5484 2.802556 GAGAAATGCTCTTGCTCACG 57.197 50.000 3.47 0.00 40.61 4.35
4012 5496 6.202954 CCCCAGCGTTATTACTAAGAGAAATG 59.797 42.308 0.00 0.00 0.00 2.32
4013 5497 6.126854 ACCCCAGCGTTATTACTAAGAGAAAT 60.127 38.462 0.00 0.00 0.00 2.17
4018 6650 5.658190 ACTTACCCCAGCGTTATTACTAAGA 59.342 40.000 0.00 0.00 0.00 2.10
4022 6654 4.510571 CAACTTACCCCAGCGTTATTACT 58.489 43.478 0.00 0.00 0.00 2.24
4035 6667 0.034089 ATCAGGGCAGCAACTTACCC 60.034 55.000 0.00 0.00 43.17 3.69
4042 6674 2.642254 GCTTGCATCAGGGCAGCAA 61.642 57.895 0.00 0.00 45.88 3.91
4054 6686 1.385528 CTGCATATGGACTGCTTGCA 58.614 50.000 4.56 0.00 40.73 4.08
4063 6695 3.634504 AGTTTGATTGCCTGCATATGGA 58.365 40.909 4.56 0.00 0.00 3.41
4110 6742 4.820894 ACTCGGTTCAACCTAGCTAATT 57.179 40.909 8.04 0.00 34.66 1.40
4113 6745 4.081406 TGTAACTCGGTTCAACCTAGCTA 58.919 43.478 8.04 0.00 34.66 3.32
4120 6752 2.546368 TGCATGTGTAACTCGGTTCAAC 59.454 45.455 0.00 0.00 38.04 3.18
4122 6754 2.412870 CTGCATGTGTAACTCGGTTCA 58.587 47.619 0.00 0.00 38.04 3.18
4123 6755 1.732259 CCTGCATGTGTAACTCGGTTC 59.268 52.381 0.00 0.00 38.04 3.62
4148 6780 1.408969 TGGTTGACTGCCCCTTTTTC 58.591 50.000 0.00 0.00 0.00 2.29
4161 6794 0.105760 ACATGGGCCTGTTTGGTTGA 60.106 50.000 4.53 0.00 38.35 3.18
4176 6809 1.647545 GCCACCACATCCGACACATG 61.648 60.000 0.00 0.00 0.00 3.21
4178 6811 2.031919 GCCACCACATCCGACACA 59.968 61.111 0.00 0.00 0.00 3.72
4196 6829 3.490759 GTGGTGCATGACCTCGCG 61.491 66.667 0.00 0.00 46.32 5.87
4205 6838 1.229272 ATTGGCTTGGGTGGTGCAT 60.229 52.632 0.00 0.00 0.00 3.96
4249 6882 3.617284 GTTGGGTGTCCTTGGGTATTAG 58.383 50.000 0.00 0.00 0.00 1.73
4253 6886 0.698198 TGGTTGGGTGTCCTTGGGTA 60.698 55.000 0.00 0.00 0.00 3.69
4256 6889 1.106944 GTGTGGTTGGGTGTCCTTGG 61.107 60.000 0.00 0.00 0.00 3.61
4302 6935 1.148310 CGGCAGTGTGACCAGTAAAG 58.852 55.000 0.00 0.00 0.00 1.85
4327 6960 1.760479 TAGTGGACCCCGTGTTGGTG 61.760 60.000 0.00 0.00 35.85 4.17
4331 6964 1.530013 CGAGTAGTGGACCCCGTGTT 61.530 60.000 0.00 0.00 0.00 3.32
4384 7017 1.765314 AGATCATGGTGTGGCTAGACC 59.235 52.381 9.71 9.71 40.56 3.85
4392 7025 5.104941 TGTTACCTTAGGAGATCATGGTGTG 60.105 44.000 4.77 0.00 0.00 3.82
4400 7033 3.655384 AGGGGTGTTACCTTAGGAGATC 58.345 50.000 4.77 0.00 38.64 2.75
4450 7083 1.555967 GGTTTTCATTAGGGCAGGCA 58.444 50.000 0.00 0.00 0.00 4.75
4464 7097 4.862574 GTGAAAGCTCAAGTTTTCGGTTTT 59.137 37.500 12.67 0.00 44.68 2.43
4468 7101 3.304057 GGAGTGAAAGCTCAAGTTTTCGG 60.304 47.826 12.67 0.00 44.68 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.