Multiple sequence alignment - TraesCS7D01G155400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G155400 chr7D 100.000 3675 0 0 1 3675 103334229 103330555 0.000000e+00 6787.0
1 TraesCS7D01G155400 chr7D 92.673 1897 110 11 847 2718 103212146 103210254 0.000000e+00 2706.0
2 TraesCS7D01G155400 chr7D 93.827 81 3 2 3363 3441 102625701 102625781 1.790000e-23 121.0
3 TraesCS7D01G155400 chr7D 88.406 69 5 3 3380 3445 635637196 635637264 3.040000e-11 80.5
4 TraesCS7D01G155400 chr7D 97.059 34 1 0 3396 3429 56514021 56513988 1.430000e-04 58.4
5 TraesCS7D01G155400 chr7D 96.774 31 1 0 3399 3429 56497673 56497643 7.000000e-03 52.8
6 TraesCS7D01G155400 chr7B 91.405 2676 167 24 829 3446 61747342 61744672 0.000000e+00 3609.0
7 TraesCS7D01G155400 chr7B 89.865 1924 138 22 848 2718 61628991 61627072 0.000000e+00 2420.0
8 TraesCS7D01G155400 chr7B 92.051 780 36 10 1 755 61748164 61747386 0.000000e+00 1074.0
9 TraesCS7D01G155400 chr7A 92.098 1873 119 10 847 2693 107917843 107915974 0.000000e+00 2612.0
10 TraesCS7D01G155400 chr2A 81.250 224 25 13 1885 2104 100627827 100627617 8.160000e-37 165.0
11 TraesCS7D01G155400 chr4A 79.051 253 42 10 3426 3675 673212801 673212557 2.940000e-36 163.0
12 TraesCS7D01G155400 chr2D 81.503 173 26 6 3507 3675 620453310 620453140 1.780000e-28 137.0
13 TraesCS7D01G155400 chr3A 79.878 164 26 7 3299 3458 695216331 695216171 3.000000e-21 113.0
14 TraesCS7D01G155400 chr1D 88.372 86 8 2 3363 3446 202192528 202192443 6.490000e-18 102.0
15 TraesCS7D01G155400 chr5D 82.796 93 12 4 3358 3446 551968281 551968373 3.040000e-11 80.5
16 TraesCS7D01G155400 chr6D 87.755 49 4 2 251 298 460882896 460882943 5.130000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G155400 chr7D 103330555 103334229 3674 True 6787.0 6787 100.000 1 3675 1 chr7D.!!$R4 3674
1 TraesCS7D01G155400 chr7D 103210254 103212146 1892 True 2706.0 2706 92.673 847 2718 1 chr7D.!!$R3 1871
2 TraesCS7D01G155400 chr7B 61627072 61628991 1919 True 2420.0 2420 89.865 848 2718 1 chr7B.!!$R1 1870
3 TraesCS7D01G155400 chr7B 61744672 61748164 3492 True 2341.5 3609 91.728 1 3446 2 chr7B.!!$R2 3445
4 TraesCS7D01G155400 chr7A 107915974 107917843 1869 True 2612.0 2612 92.098 847 2693 1 chr7A.!!$R1 1846

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
810 836 0.031857 CCCGACATTGCAAGCAAACA 59.968 50.0 11.89 0.0 39.55 2.83 F
826 852 0.108041 AACAGACAAACACGTCGGGT 60.108 50.0 0.00 0.0 40.98 5.28 F
1986 2058 0.596082 TCATCGACGAGTGCAAGACA 59.404 50.0 3.01 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1764 1829 0.120377 TGGTCTTGGTGGGGAGGTAT 59.880 55.000 0.00 0.0 0.0 2.73 R
2162 2246 1.073923 GTTCAGAATGGTGGGACAGGT 59.926 52.381 0.00 0.0 33.4 4.00 R
3488 3616 0.030504 TGAGCGCACACAACAAATGG 59.969 50.000 11.47 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 3.950232 GAGGGGCACTCGGTATGA 58.050 61.111 0.00 0.00 36.29 2.15
104 105 2.721797 CGAAAGATGAAGCGAAACACGG 60.722 50.000 0.00 0.00 42.83 4.94
142 146 5.362987 TTTTTGTGTTTTACGCGATGTTG 57.637 34.783 15.93 0.00 0.00 3.33
168 172 1.057851 TGTTTCGTGGGAAGAGGGGT 61.058 55.000 0.00 0.00 32.80 4.95
278 282 0.451783 GCTTCAGTATTGCAACGGGG 59.548 55.000 0.00 0.00 0.00 5.73
311 315 3.851976 AGTGATCTAACACCACTCGTC 57.148 47.619 0.00 0.00 41.12 4.20
312 316 2.492484 AGTGATCTAACACCACTCGTCC 59.508 50.000 0.00 0.00 41.12 4.79
315 319 0.963962 TCTAACACCACTCGTCCCAC 59.036 55.000 0.00 0.00 0.00 4.61
328 351 3.997021 CTCGTCCCACCATATTCTAATGC 59.003 47.826 0.00 0.00 0.00 3.56
478 501 4.156455 ACCCATGTCAAATAGCTCGAAT 57.844 40.909 0.00 0.00 0.00 3.34
552 577 4.759693 TGAGTTGACCGAGTTAATGCAATT 59.240 37.500 0.00 0.00 41.28 2.32
560 585 5.587443 ACCGAGTTAATGCAATTACCTTACC 59.413 40.000 0.00 0.00 38.79 2.85
562 587 6.018180 CCGAGTTAATGCAATTACCTTACCTC 60.018 42.308 0.00 0.00 38.79 3.85
568 593 5.186256 TGCAATTACCTTACCTCCATCAA 57.814 39.130 0.00 0.00 0.00 2.57
584 609 0.241749 TCAATGAGGCGCTGCAAAAG 59.758 50.000 7.64 0.85 0.00 2.27
585 610 0.038892 CAATGAGGCGCTGCAAAAGT 60.039 50.000 7.64 0.00 0.00 2.66
588 613 1.313772 TGAGGCGCTGCAAAAGTTTA 58.686 45.000 7.64 0.00 0.00 2.01
615 641 6.546972 TGATTAAGTTAATGCAACACGTGA 57.453 33.333 25.01 0.00 39.81 4.35
628 654 0.605589 CACGTGAGAAGGAGAGGCTT 59.394 55.000 10.90 0.00 0.00 4.35
639 665 1.680249 GGAGAGGCTTCACCAATGGAC 60.680 57.143 6.16 0.00 43.14 4.02
649 675 0.611714 ACCAATGGACGTAGGACCAC 59.388 55.000 6.16 0.00 40.26 4.16
669 695 4.020218 CCACCAACTCCTCTTCAATACAGA 60.020 45.833 0.00 0.00 0.00 3.41
698 724 8.531622 AGATAGAAATACTTGCATGAATCTCG 57.468 34.615 6.60 0.00 0.00 4.04
699 725 5.998454 AGAAATACTTGCATGAATCTCGG 57.002 39.130 6.60 0.00 0.00 4.63
713 739 4.338400 TGAATCTCGGTGTTCAGATCGTAT 59.662 41.667 0.00 0.00 31.24 3.06
729 755 7.233553 TCAGATCGTATGGTTAGGATCAATCTT 59.766 37.037 14.55 0.00 45.68 2.40
742 768 2.333926 TCAATCTTGCGACAGTTACCG 58.666 47.619 0.00 0.00 0.00 4.02
768 794 3.840763 GCAATACGCTTTGAGAAAGAACG 59.159 43.478 0.16 0.00 41.02 3.95
769 795 4.394795 CAATACGCTTTGAGAAAGAACGG 58.605 43.478 0.16 0.00 41.02 4.44
770 796 1.949465 ACGCTTTGAGAAAGAACGGT 58.051 45.000 0.16 0.00 41.02 4.83
771 797 1.865340 ACGCTTTGAGAAAGAACGGTC 59.135 47.619 0.00 0.00 41.02 4.79
773 799 2.218603 GCTTTGAGAAAGAACGGTCCA 58.781 47.619 0.00 0.00 41.02 4.02
775 801 3.728845 CTTTGAGAAAGAACGGTCCAGA 58.271 45.455 0.00 0.00 41.02 3.86
778 804 5.477607 TTGAGAAAGAACGGTCCAGATTA 57.522 39.130 0.00 0.00 0.00 1.75
779 805 5.477607 TGAGAAAGAACGGTCCAGATTAA 57.522 39.130 0.00 0.00 0.00 1.40
780 806 6.049955 TGAGAAAGAACGGTCCAGATTAAT 57.950 37.500 0.00 0.00 0.00 1.40
781 807 5.874810 TGAGAAAGAACGGTCCAGATTAATG 59.125 40.000 0.00 0.00 0.00 1.90
783 809 6.653989 AGAAAGAACGGTCCAGATTAATGAT 58.346 36.000 0.00 0.00 0.00 2.45
784 810 7.792032 AGAAAGAACGGTCCAGATTAATGATA 58.208 34.615 0.00 0.00 0.00 2.15
785 811 8.265055 AGAAAGAACGGTCCAGATTAATGATAA 58.735 33.333 0.00 0.00 0.00 1.75
786 812 7.787725 AAGAACGGTCCAGATTAATGATAAC 57.212 36.000 0.00 0.00 0.00 1.89
787 813 6.884832 AGAACGGTCCAGATTAATGATAACA 58.115 36.000 0.00 0.00 0.00 2.41
788 814 6.761714 AGAACGGTCCAGATTAATGATAACAC 59.238 38.462 0.00 0.00 0.00 3.32
792 818 4.213482 GTCCAGATTAATGATAACACCGCC 59.787 45.833 0.00 0.00 0.00 6.13
793 819 3.502211 CCAGATTAATGATAACACCGCCC 59.498 47.826 0.00 0.00 0.00 6.13
794 820 3.186409 CAGATTAATGATAACACCGCCCG 59.814 47.826 0.00 0.00 0.00 6.13
795 821 2.983907 TTAATGATAACACCGCCCGA 57.016 45.000 0.00 0.00 0.00 5.14
796 822 2.228138 TAATGATAACACCGCCCGAC 57.772 50.000 0.00 0.00 0.00 4.79
797 823 0.250793 AATGATAACACCGCCCGACA 59.749 50.000 0.00 0.00 0.00 4.35
798 824 0.468226 ATGATAACACCGCCCGACAT 59.532 50.000 0.00 0.00 0.00 3.06
799 825 0.250793 TGATAACACCGCCCGACATT 59.749 50.000 0.00 0.00 0.00 2.71
800 826 0.655733 GATAACACCGCCCGACATTG 59.344 55.000 0.00 0.00 0.00 2.82
801 827 1.373590 ATAACACCGCCCGACATTGC 61.374 55.000 0.00 0.00 0.00 3.56
802 828 2.733319 TAACACCGCCCGACATTGCA 62.733 55.000 0.00 0.00 0.00 4.08
803 829 3.361158 CACCGCCCGACATTGCAA 61.361 61.111 0.00 0.00 0.00 4.08
804 830 3.055719 ACCGCCCGACATTGCAAG 61.056 61.111 4.94 0.00 0.00 4.01
805 831 4.481112 CCGCCCGACATTGCAAGC 62.481 66.667 4.94 0.08 0.00 4.01
806 832 3.736100 CGCCCGACATTGCAAGCA 61.736 61.111 4.94 0.00 0.00 3.91
807 833 2.650196 GCCCGACATTGCAAGCAA 59.350 55.556 10.19 10.19 40.47 3.91
808 834 1.006337 GCCCGACATTGCAAGCAAA 60.006 52.632 11.89 0.00 39.55 3.68
809 835 1.284297 GCCCGACATTGCAAGCAAAC 61.284 55.000 11.89 5.87 39.55 2.93
810 836 0.031857 CCCGACATTGCAAGCAAACA 59.968 50.000 11.89 0.00 39.55 2.83
811 837 1.411394 CCGACATTGCAAGCAAACAG 58.589 50.000 11.89 7.51 39.55 3.16
812 838 1.001487 CCGACATTGCAAGCAAACAGA 60.001 47.619 11.89 0.00 39.55 3.41
813 839 2.046313 CGACATTGCAAGCAAACAGAC 58.954 47.619 11.89 4.95 39.55 3.51
814 840 2.541383 CGACATTGCAAGCAAACAGACA 60.541 45.455 11.89 0.00 39.55 3.41
815 841 3.446799 GACATTGCAAGCAAACAGACAA 58.553 40.909 11.89 0.00 39.55 3.18
816 842 3.859443 ACATTGCAAGCAAACAGACAAA 58.141 36.364 11.89 0.00 39.55 2.83
817 843 3.618150 ACATTGCAAGCAAACAGACAAAC 59.382 39.130 11.89 0.00 39.55 2.93
818 844 3.309961 TTGCAAGCAAACAGACAAACA 57.690 38.095 4.79 0.00 32.44 2.83
819 845 2.605030 TGCAAGCAAACAGACAAACAC 58.395 42.857 0.00 0.00 0.00 3.32
820 846 1.583404 GCAAGCAAACAGACAAACACG 59.417 47.619 0.00 0.00 0.00 4.49
821 847 2.862512 CAAGCAAACAGACAAACACGT 58.137 42.857 0.00 0.00 0.00 4.49
822 848 2.825086 AGCAAACAGACAAACACGTC 57.175 45.000 0.00 0.00 36.08 4.34
823 849 1.062002 AGCAAACAGACAAACACGTCG 59.938 47.619 0.00 0.00 40.98 5.12
824 850 1.854434 GCAAACAGACAAACACGTCGG 60.854 52.381 0.00 0.00 40.98 4.79
825 851 1.011333 AAACAGACAAACACGTCGGG 58.989 50.000 0.00 0.00 40.98 5.14
826 852 0.108041 AACAGACAAACACGTCGGGT 60.108 50.000 0.00 0.00 40.98 5.28
827 853 0.746063 ACAGACAAACACGTCGGGTA 59.254 50.000 0.00 0.00 40.98 3.69
890 916 0.893727 CCTTACAAACGCAAGCCCCT 60.894 55.000 0.00 0.00 45.62 4.79
902 928 1.843851 CAAGCCCCTAATCCACCAGTA 59.156 52.381 0.00 0.00 0.00 2.74
990 1049 3.032609 CGCCGCACAGATCGATCC 61.033 66.667 21.66 5.59 0.00 3.36
1225 1290 3.664223 GACGACGTGCTCGACCTCC 62.664 68.421 16.04 0.00 46.14 4.30
1401 1466 4.011517 GGCAAGACGAACCCGGGA 62.012 66.667 32.02 0.00 40.78 5.14
1410 1475 2.779598 AACCCGGGACCCAACCTT 60.780 61.111 32.02 4.90 0.00 3.50
1872 1944 2.815647 GCGGCGAAGGAGTCCAAG 60.816 66.667 12.98 2.97 0.00 3.61
1874 1946 2.646175 CGGCGAAGGAGTCCAAGGA 61.646 63.158 12.86 0.00 0.00 3.36
1986 2058 0.596082 TCATCGACGAGTGCAAGACA 59.404 50.000 3.01 0.00 0.00 3.41
2172 2256 0.619543 TAAGCCCCTACCTGTCCCAC 60.620 60.000 0.00 0.00 0.00 4.61
2181 2265 1.444933 ACCTGTCCCACCATTCTGAA 58.555 50.000 0.00 0.00 0.00 3.02
2186 2270 2.091610 TGTCCCACCATTCTGAACCAAA 60.092 45.455 0.00 0.00 0.00 3.28
2193 2277 5.111293 CACCATTCTGAACCAAATAATGCC 58.889 41.667 0.00 0.00 0.00 4.40
2194 2278 4.162131 ACCATTCTGAACCAAATAATGCCC 59.838 41.667 0.00 0.00 0.00 5.36
2195 2279 4.406649 CCATTCTGAACCAAATAATGCCCT 59.593 41.667 0.00 0.00 0.00 5.19
2199 2296 4.019174 CTGAACCAAATAATGCCCTGACT 58.981 43.478 0.00 0.00 0.00 3.41
2221 2318 3.933155 GTGACACTCACTTCACTTGTG 57.067 47.619 0.00 0.00 43.73 3.33
2222 2319 3.521560 GTGACACTCACTTCACTTGTGA 58.478 45.455 0.00 0.00 43.73 3.58
2245 2342 1.481772 TGTGATCGATGATGGCAGACA 59.518 47.619 0.54 0.00 0.00 3.41
2281 2378 2.989824 ACGCTGAGGCTGTACGGT 60.990 61.111 3.10 0.00 36.09 4.83
2306 2403 1.005275 ATCATGATCGCGAGGCAGG 60.005 57.895 16.66 16.88 0.00 4.85
2371 2468 2.028876 ACGATCACCATGATACCGACA 58.971 47.619 0.00 0.00 37.20 4.35
2698 2796 0.514691 GCTGCCTCTTTGAACGACTG 59.485 55.000 0.00 0.00 0.00 3.51
2701 2799 0.793250 GCCTCTTTGAACGACTGCTC 59.207 55.000 0.00 0.00 0.00 4.26
2727 2832 1.066757 GTAGAAGTACACTAGCGGGGC 59.933 57.143 0.00 0.00 0.00 5.80
2772 2879 3.876914 TGTTGTTGCCTAGTTGTCTCAAG 59.123 43.478 0.00 0.00 0.00 3.02
2776 2883 4.141711 TGTTGCCTAGTTGTCTCAAGTTCT 60.142 41.667 0.00 0.00 0.00 3.01
2814 2921 5.075858 TGGACAATTCATTTGAGATTGGC 57.924 39.130 14.33 12.45 38.76 4.52
2817 2924 5.579511 GGACAATTCATTTGAGATTGGCTTG 59.420 40.000 14.96 0.00 38.76 4.01
2857 2970 2.103941 ACCCATGGTGAACGCAAAAATT 59.896 40.909 11.73 0.00 32.98 1.82
2887 3000 8.977267 TTCCAAATCCATTCAAAACAGAATTT 57.023 26.923 0.00 0.00 36.13 1.82
2897 3010 9.918630 CATTCAAAACAGAATTTAAGGACTCAT 57.081 29.630 0.00 0.00 36.13 2.90
2918 3031 8.177663 ACTCATAATTTTCTGTTGATGTAAGCG 58.822 33.333 0.00 0.00 0.00 4.68
2924 3037 2.480037 TCTGTTGATGTAAGCGCACAAG 59.520 45.455 11.47 0.00 30.84 3.16
2934 3047 4.513692 TGTAAGCGCACAAGTCTTACATTT 59.486 37.500 11.47 0.00 43.95 2.32
2944 3057 6.631238 CACAAGTCTTACATTTTTGTACGTGG 59.369 38.462 0.00 0.00 31.34 4.94
2959 3072 9.499479 TTTTGTACGTGGTACCTGAATAATTTA 57.501 29.630 14.36 0.00 38.14 1.40
2994 3107 4.305989 CAAGAAGCACTACCTTTTTGCA 57.694 40.909 0.00 0.00 38.81 4.08
3005 3118 2.092484 ACCTTTTTGCAAAAGCCACCAT 60.092 40.909 22.78 5.18 0.00 3.55
3018 3131 1.001974 GCCACCATATCAGCATCCGTA 59.998 52.381 0.00 0.00 0.00 4.02
3036 3149 9.808808 GCATCCGTATACTATATTATACAGTCG 57.191 37.037 16.27 6.18 35.46 4.18
3083 3196 6.199908 CCAAATCTATACTCAGAGCAGTTTCG 59.800 42.308 0.00 0.00 0.00 3.46
3085 3198 6.701145 ATCTATACTCAGAGCAGTTTCGAA 57.299 37.500 0.00 0.00 0.00 3.71
3117 3230 7.255730 CCAATAATTCTTCCATAGCCCTTTGAG 60.256 40.741 0.00 0.00 0.00 3.02
3120 3233 4.494091 TCTTCCATAGCCCTTTGAGAAG 57.506 45.455 0.00 0.00 0.00 2.85
3149 3262 4.838904 ACTGGGGTGATTAGGTAAGAAC 57.161 45.455 0.00 0.00 0.00 3.01
3152 3265 5.073965 ACTGGGGTGATTAGGTAAGAACAAA 59.926 40.000 0.00 0.00 0.00 2.83
3225 3351 9.668497 CACTTCATATATCCTGAATGATGATGT 57.332 33.333 0.00 0.00 33.90 3.06
3226 3352 9.668497 ACTTCATATATCCTGAATGATGATGTG 57.332 33.333 0.00 0.00 33.22 3.21
3229 3355 7.551617 TCATATATCCTGAATGATGATGTGTGC 59.448 37.037 0.00 0.00 0.00 4.57
3238 3364 2.038820 TGATGATGTGTGCCTCAACTGA 59.961 45.455 0.00 0.00 0.00 3.41
3242 3368 3.503363 TGATGTGTGCCTCAACTGAAATC 59.497 43.478 0.00 0.00 0.00 2.17
3260 3386 9.225682 ACTGAAATCCTATTTTATCTCTACCCA 57.774 33.333 0.00 0.00 0.00 4.51
3282 3408 5.131142 CCATAATGGGAGAGTTGGTAGTCTT 59.869 44.000 0.00 0.00 34.15 3.01
3283 3409 4.559862 AATGGGAGAGTTGGTAGTCTTG 57.440 45.455 0.00 0.00 34.15 3.02
3292 3418 1.729586 TGGTAGTCTTGCCTCACCTT 58.270 50.000 0.00 0.00 0.00 3.50
3301 3427 0.038166 TGCCTCACCTTCCACCAATC 59.962 55.000 0.00 0.00 0.00 2.67
3320 3446 5.335740 CCAATCCTATATTACGCTCACGAGT 60.336 44.000 0.00 0.00 43.93 4.18
3321 3447 4.744136 TCCTATATTACGCTCACGAGTG 57.256 45.455 6.07 6.07 43.93 3.51
3328 3454 2.626648 CGCTCACGAGTGTCTTACG 58.373 57.895 2.97 0.00 43.93 3.18
3329 3455 0.165295 CGCTCACGAGTGTCTTACGA 59.835 55.000 2.97 0.00 43.93 3.43
3330 3456 1.399343 CGCTCACGAGTGTCTTACGAA 60.399 52.381 2.97 0.00 43.93 3.85
3331 3457 1.977412 GCTCACGAGTGTCTTACGAAC 59.023 52.381 2.97 0.00 0.00 3.95
3332 3458 2.231693 CTCACGAGTGTCTTACGAACG 58.768 52.381 2.97 0.00 0.00 3.95
3333 3459 1.069703 TCACGAGTGTCTTACGAACGG 60.070 52.381 2.97 0.00 32.74 4.44
3343 3469 3.246936 GTCTTACGAACGGTCTTTTGCTT 59.753 43.478 0.00 0.00 0.00 3.91
3350 3476 0.789383 CGGTCTTTTGCTTAAGCGCG 60.789 55.000 21.97 0.00 45.83 6.86
3351 3477 0.515564 GGTCTTTTGCTTAAGCGCGA 59.484 50.000 21.97 12.29 45.83 5.87
3360 3486 0.096976 CTTAAGCGCGACCATGTTGG 59.903 55.000 12.10 0.00 45.02 3.77
3369 3496 3.076278 CCATGTTGGCGGCCCATT 61.076 61.111 17.97 0.00 41.78 3.16
3373 3500 0.977108 ATGTTGGCGGCCCATTTGAT 60.977 50.000 17.97 0.00 41.78 2.57
3383 3510 2.294074 GCCCATTTGATGCATGCATTT 58.706 42.857 32.60 14.56 36.70 2.32
3391 3518 7.307160 CCATTTGATGCATGCATTTACTCAATC 60.307 37.037 32.60 18.36 36.70 2.67
3397 3525 4.353737 CATGCATTTACTCAATCAACCGG 58.646 43.478 0.00 0.00 0.00 5.28
3414 3542 1.566404 CGGCACTTTCCCAAAACAAC 58.434 50.000 0.00 0.00 0.00 3.32
3417 3545 2.190161 GCACTTTCCCAAAACAACGTC 58.810 47.619 0.00 0.00 0.00 4.34
3479 3607 9.874205 ACCAATACATCAACTTTAATCAAATGG 57.126 29.630 0.00 0.00 0.00 3.16
3480 3608 9.874205 CCAATACATCAACTTTAATCAAATGGT 57.126 29.630 0.00 0.00 0.00 3.55
3482 3610 9.874205 AATACATCAACTTTAATCAAATGGTGG 57.126 29.630 0.00 0.00 32.21 4.61
3483 3611 7.301868 ACATCAACTTTAATCAAATGGTGGT 57.698 32.000 0.00 0.00 32.21 4.16
3484 3612 7.153985 ACATCAACTTTAATCAAATGGTGGTG 58.846 34.615 1.63 1.63 43.41 4.17
3485 3613 6.095432 TCAACTTTAATCAAATGGTGGTGG 57.905 37.500 0.00 0.00 32.21 4.61
3486 3614 5.011533 TCAACTTTAATCAAATGGTGGTGGG 59.988 40.000 0.00 0.00 32.21 4.61
3487 3615 3.260632 ACTTTAATCAAATGGTGGTGGGC 59.739 43.478 0.00 0.00 0.00 5.36
3488 3616 1.859302 TAATCAAATGGTGGTGGGCC 58.141 50.000 0.00 0.00 0.00 5.80
3489 3617 0.909133 AATCAAATGGTGGTGGGCCC 60.909 55.000 17.59 17.59 0.00 5.80
3490 3618 2.104359 ATCAAATGGTGGTGGGCCCA 62.104 55.000 24.45 24.45 42.51 5.36
3493 3621 1.160628 AATGGTGGTGGGCCCATTT 59.839 52.632 31.45 12.14 46.73 2.32
3494 3622 1.200092 AATGGTGGTGGGCCCATTTG 61.200 55.000 31.45 0.00 46.73 2.32
3495 3623 3.880267 AATGGTGGTGGGCCCATTTGT 62.880 52.381 31.45 9.74 46.73 2.83
3497 3625 3.882825 TGGTGGGCCCATTTGTTG 58.117 55.556 31.45 0.00 38.72 3.33
3498 3626 1.074926 TGGTGGGCCCATTTGTTGT 60.075 52.632 31.45 0.00 38.72 3.32
3499 3627 1.370810 GGTGGGCCCATTTGTTGTG 59.629 57.895 31.45 0.00 0.00 3.33
3500 3628 1.406860 GGTGGGCCCATTTGTTGTGT 61.407 55.000 31.45 0.00 0.00 3.72
3501 3629 0.249826 GTGGGCCCATTTGTTGTGTG 60.250 55.000 31.45 0.00 0.00 3.82
3502 3630 1.301637 GGGCCCATTTGTTGTGTGC 60.302 57.895 19.95 0.00 0.00 4.57
3503 3631 1.664333 GGCCCATTTGTTGTGTGCG 60.664 57.895 0.00 0.00 0.00 5.34
3504 3632 2.309501 GCCCATTTGTTGTGTGCGC 61.310 57.895 0.00 0.00 0.00 6.09
3505 3633 1.363443 CCCATTTGTTGTGTGCGCT 59.637 52.632 9.73 0.00 0.00 5.92
3506 3634 0.664166 CCCATTTGTTGTGTGCGCTC 60.664 55.000 9.73 5.51 0.00 5.03
3507 3635 0.030504 CCATTTGTTGTGTGCGCTCA 59.969 50.000 9.73 8.97 0.00 4.26
3508 3636 1.336148 CCATTTGTTGTGTGCGCTCAT 60.336 47.619 16.02 0.00 0.00 2.90
3509 3637 2.396601 CATTTGTTGTGTGCGCTCATT 58.603 42.857 16.02 0.00 0.00 2.57
3510 3638 2.118228 TTTGTTGTGTGCGCTCATTC 57.882 45.000 16.02 9.48 0.00 2.67
3511 3639 1.308047 TTGTTGTGTGCGCTCATTCT 58.692 45.000 16.02 0.00 0.00 2.40
3512 3640 1.308047 TGTTGTGTGCGCTCATTCTT 58.692 45.000 16.02 0.00 0.00 2.52
3513 3641 2.488952 TGTTGTGTGCGCTCATTCTTA 58.511 42.857 16.02 0.00 0.00 2.10
3514 3642 3.073678 TGTTGTGTGCGCTCATTCTTAT 58.926 40.909 16.02 0.00 0.00 1.73
3515 3643 3.501828 TGTTGTGTGCGCTCATTCTTATT 59.498 39.130 16.02 0.00 0.00 1.40
3516 3644 4.023279 TGTTGTGTGCGCTCATTCTTATTT 60.023 37.500 16.02 0.00 0.00 1.40
3517 3645 4.764679 TGTGTGCGCTCATTCTTATTTT 57.235 36.364 16.02 0.00 0.00 1.82
3518 3646 4.722194 TGTGTGCGCTCATTCTTATTTTC 58.278 39.130 16.02 0.00 0.00 2.29
3519 3647 4.455533 TGTGTGCGCTCATTCTTATTTTCT 59.544 37.500 16.02 0.00 0.00 2.52
3520 3648 5.048782 TGTGTGCGCTCATTCTTATTTTCTT 60.049 36.000 16.02 0.00 0.00 2.52
3521 3649 5.858581 GTGTGCGCTCATTCTTATTTTCTTT 59.141 36.000 16.02 0.00 0.00 2.52
3522 3650 5.858049 TGTGCGCTCATTCTTATTTTCTTTG 59.142 36.000 9.73 0.00 0.00 2.77
3523 3651 5.858581 GTGCGCTCATTCTTATTTTCTTTGT 59.141 36.000 9.73 0.00 0.00 2.83
3524 3652 6.363357 GTGCGCTCATTCTTATTTTCTTTGTT 59.637 34.615 9.73 0.00 0.00 2.83
3525 3653 6.922957 TGCGCTCATTCTTATTTTCTTTGTTT 59.077 30.769 9.73 0.00 0.00 2.83
3526 3654 7.437862 TGCGCTCATTCTTATTTTCTTTGTTTT 59.562 29.630 9.73 0.00 0.00 2.43
3527 3655 8.275632 GCGCTCATTCTTATTTTCTTTGTTTTT 58.724 29.630 0.00 0.00 0.00 1.94
3574 3702 9.912634 TCCTGTTTCATTTTTCTATGACAAATC 57.087 29.630 0.00 0.00 34.41 2.17
3575 3703 9.918630 CCTGTTTCATTTTTCTATGACAAATCT 57.081 29.630 0.00 0.00 34.41 2.40
3592 3720 9.624697 TGACAAATCTATTATTTTGTGTTCAGC 57.375 29.630 5.83 0.00 43.95 4.26
3593 3721 9.624697 GACAAATCTATTATTTTGTGTTCAGCA 57.375 29.630 5.83 0.00 43.95 4.41
3603 3731 6.741992 TTTTGTGTTCAGCATACTATCAGG 57.258 37.500 0.00 0.00 0.00 3.86
3604 3732 5.675684 TTGTGTTCAGCATACTATCAGGA 57.324 39.130 0.00 0.00 0.00 3.86
3605 3733 5.876651 TGTGTTCAGCATACTATCAGGAT 57.123 39.130 0.00 0.00 0.00 3.24
3606 3734 5.847304 TGTGTTCAGCATACTATCAGGATC 58.153 41.667 0.00 0.00 0.00 3.36
3607 3735 4.920340 GTGTTCAGCATACTATCAGGATCG 59.080 45.833 0.00 0.00 0.00 3.69
3608 3736 4.827284 TGTTCAGCATACTATCAGGATCGA 59.173 41.667 0.00 0.00 0.00 3.59
3609 3737 5.157781 GTTCAGCATACTATCAGGATCGAC 58.842 45.833 0.00 0.00 0.00 4.20
3610 3738 4.398319 TCAGCATACTATCAGGATCGACA 58.602 43.478 0.00 0.00 0.00 4.35
3611 3739 4.216472 TCAGCATACTATCAGGATCGACAC 59.784 45.833 0.00 0.00 0.00 3.67
3612 3740 4.217334 CAGCATACTATCAGGATCGACACT 59.783 45.833 0.00 0.00 0.00 3.55
3613 3741 4.830046 AGCATACTATCAGGATCGACACTT 59.170 41.667 0.00 0.00 0.00 3.16
3614 3742 5.303078 AGCATACTATCAGGATCGACACTTT 59.697 40.000 0.00 0.00 0.00 2.66
3615 3743 5.631512 GCATACTATCAGGATCGACACTTTC 59.368 44.000 0.00 0.00 0.00 2.62
3616 3744 4.657436 ACTATCAGGATCGACACTTTCC 57.343 45.455 0.00 0.00 0.00 3.13
3617 3745 2.990066 ATCAGGATCGACACTTTCCC 57.010 50.000 0.00 0.00 0.00 3.97
3618 3746 1.639722 TCAGGATCGACACTTTCCCA 58.360 50.000 0.00 0.00 0.00 4.37
3619 3747 1.974957 TCAGGATCGACACTTTCCCAA 59.025 47.619 0.00 0.00 0.00 4.12
3620 3748 2.370519 TCAGGATCGACACTTTCCCAAA 59.629 45.455 0.00 0.00 0.00 3.28
3621 3749 2.744202 CAGGATCGACACTTTCCCAAAG 59.256 50.000 0.00 0.00 44.10 2.77
3622 3750 1.468914 GGATCGACACTTTCCCAAAGC 59.531 52.381 0.00 0.00 42.27 3.51
3623 3751 2.151202 GATCGACACTTTCCCAAAGCA 58.849 47.619 0.00 0.00 42.27 3.91
3624 3752 2.045561 TCGACACTTTCCCAAAGCAA 57.954 45.000 0.00 0.00 42.27 3.91
3625 3753 2.370349 TCGACACTTTCCCAAAGCAAA 58.630 42.857 0.00 0.00 42.27 3.68
3626 3754 2.755655 TCGACACTTTCCCAAAGCAAAA 59.244 40.909 0.00 0.00 42.27 2.44
3627 3755 3.383185 TCGACACTTTCCCAAAGCAAAAT 59.617 39.130 0.00 0.00 42.27 1.82
3628 3756 3.735746 CGACACTTTCCCAAAGCAAAATC 59.264 43.478 0.00 0.00 42.27 2.17
3629 3757 4.058124 GACACTTTCCCAAAGCAAAATCC 58.942 43.478 0.00 0.00 42.27 3.01
3630 3758 3.454082 ACACTTTCCCAAAGCAAAATCCA 59.546 39.130 0.00 0.00 42.27 3.41
3631 3759 4.080638 ACACTTTCCCAAAGCAAAATCCAA 60.081 37.500 0.00 0.00 42.27 3.53
3632 3760 5.065235 CACTTTCCCAAAGCAAAATCCAAT 58.935 37.500 0.00 0.00 42.27 3.16
3633 3761 5.179929 CACTTTCCCAAAGCAAAATCCAATC 59.820 40.000 0.00 0.00 42.27 2.67
3634 3762 4.970860 TTCCCAAAGCAAAATCCAATCA 57.029 36.364 0.00 0.00 0.00 2.57
3635 3763 4.970860 TCCCAAAGCAAAATCCAATCAA 57.029 36.364 0.00 0.00 0.00 2.57
3636 3764 5.301835 TCCCAAAGCAAAATCCAATCAAA 57.698 34.783 0.00 0.00 0.00 2.69
3637 3765 5.878627 TCCCAAAGCAAAATCCAATCAAAT 58.121 33.333 0.00 0.00 0.00 2.32
3638 3766 6.305411 TCCCAAAGCAAAATCCAATCAAATT 58.695 32.000 0.00 0.00 0.00 1.82
3639 3767 6.207025 TCCCAAAGCAAAATCCAATCAAATTG 59.793 34.615 0.00 0.00 39.94 2.32
3650 3778 4.005487 CAATCAAATTGGCACTTTCCCA 57.995 40.909 0.00 0.00 36.63 4.37
3651 3779 4.387598 CAATCAAATTGGCACTTTCCCAA 58.612 39.130 0.00 0.00 45.63 4.12
3652 3780 4.703379 ATCAAATTGGCACTTTCCCAAA 57.297 36.364 0.00 0.00 44.80 3.28
3653 3781 3.802866 TCAAATTGGCACTTTCCCAAAC 58.197 40.909 0.00 0.00 44.80 2.93
3654 3782 2.877786 CAAATTGGCACTTTCCCAAACC 59.122 45.455 0.00 0.00 44.80 3.27
3655 3783 1.799933 ATTGGCACTTTCCCAAACCA 58.200 45.000 0.00 0.00 44.80 3.67
3656 3784 1.573108 TTGGCACTTTCCCAAACCAA 58.427 45.000 0.00 0.00 39.29 3.67
3657 3785 0.827368 TGGCACTTTCCCAAACCAAC 59.173 50.000 0.00 0.00 0.00 3.77
3658 3786 0.249280 GGCACTTTCCCAAACCAACG 60.249 55.000 0.00 0.00 0.00 4.10
3659 3787 0.458260 GCACTTTCCCAAACCAACGT 59.542 50.000 0.00 0.00 0.00 3.99
3660 3788 1.535226 GCACTTTCCCAAACCAACGTC 60.535 52.381 0.00 0.00 0.00 4.34
3661 3789 1.746220 CACTTTCCCAAACCAACGTCA 59.254 47.619 0.00 0.00 0.00 4.35
3662 3790 2.360801 CACTTTCCCAAACCAACGTCAT 59.639 45.455 0.00 0.00 0.00 3.06
3663 3791 2.360801 ACTTTCCCAAACCAACGTCATG 59.639 45.455 0.00 0.00 0.00 3.07
3664 3792 0.671251 TTCCCAAACCAACGTCATGC 59.329 50.000 0.00 0.00 0.00 4.06
3665 3793 0.466372 TCCCAAACCAACGTCATGCA 60.466 50.000 0.00 0.00 0.00 3.96
3666 3794 0.602562 CCCAAACCAACGTCATGCAT 59.397 50.000 0.00 0.00 0.00 3.96
3667 3795 1.000731 CCCAAACCAACGTCATGCATT 59.999 47.619 0.00 0.00 0.00 3.56
3668 3796 2.230025 CCCAAACCAACGTCATGCATTA 59.770 45.455 0.00 0.00 0.00 1.90
3669 3797 3.305676 CCCAAACCAACGTCATGCATTAA 60.306 43.478 0.00 0.00 0.00 1.40
3670 3798 3.672867 CCAAACCAACGTCATGCATTAAC 59.327 43.478 0.00 0.00 0.00 2.01
3671 3799 4.545610 CAAACCAACGTCATGCATTAACT 58.454 39.130 0.00 0.00 0.00 2.24
3672 3800 4.419522 AACCAACGTCATGCATTAACTC 57.580 40.909 0.00 0.00 0.00 3.01
3673 3801 3.407698 ACCAACGTCATGCATTAACTCA 58.592 40.909 0.00 0.00 0.00 3.41
3674 3802 3.818210 ACCAACGTCATGCATTAACTCAA 59.182 39.130 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 0.824182 CACGCCCCAGTTTTTACCCA 60.824 55.000 0.00 0.00 0.00 4.51
67 68 0.541296 TTCGTCCTTCGGTCCTTCCT 60.541 55.000 0.00 0.00 40.32 3.36
123 127 2.287069 CCCAACATCGCGTAAAACACAA 60.287 45.455 5.77 0.00 0.00 3.33
142 146 2.427812 TCTTCCCACGAAACAAAAACCC 59.572 45.455 0.00 0.00 0.00 4.11
168 172 3.664551 TCAACTCTCTTCCCCTCGATA 57.335 47.619 0.00 0.00 0.00 2.92
278 282 9.360093 GGTGTTAGATCACTAGAATATGTATGC 57.640 37.037 0.00 0.00 38.28 3.14
311 315 6.205464 CACTTACTGCATTAGAATATGGTGGG 59.795 42.308 0.00 0.00 0.00 4.61
312 316 6.992123 TCACTTACTGCATTAGAATATGGTGG 59.008 38.462 0.00 0.00 0.00 4.61
315 319 9.888878 CAAATCACTTACTGCATTAGAATATGG 57.111 33.333 0.00 0.00 0.00 2.74
516 541 6.980593 TCGGTCAACTCAAATCAAATCATTT 58.019 32.000 0.00 0.00 0.00 2.32
532 557 5.123344 AGGTAATTGCATTAACTCGGTCAAC 59.877 40.000 0.00 0.00 38.34 3.18
536 561 5.587443 GGTAAGGTAATTGCATTAACTCGGT 59.413 40.000 8.49 0.00 41.72 4.69
560 585 1.783031 GCAGCGCCTCATTGATGGAG 61.783 60.000 2.29 4.59 0.00 3.86
562 587 1.659622 TTGCAGCGCCTCATTGATGG 61.660 55.000 2.29 0.00 0.00 3.51
568 593 0.675633 AAACTTTTGCAGCGCCTCAT 59.324 45.000 2.29 0.00 0.00 2.90
588 613 8.698854 CACGTGTTGCATTAACTTAATCAAATT 58.301 29.630 7.58 0.00 40.05 1.82
611 637 0.891373 TGAAGCCTCTCCTTCTCACG 59.109 55.000 3.89 0.00 41.36 4.35
615 641 1.734655 TTGGTGAAGCCTCTCCTTCT 58.265 50.000 5.09 0.00 41.36 2.85
628 654 0.899720 GGTCCTACGTCCATTGGTGA 59.100 55.000 1.86 0.00 0.00 4.02
639 665 0.531200 GAGGAGTTGGTGGTCCTACG 59.469 60.000 0.00 0.00 43.65 3.51
649 675 5.799213 ACTTCTGTATTGAAGAGGAGTTGG 58.201 41.667 10.68 0.00 44.40 3.77
690 716 2.492088 ACGATCTGAACACCGAGATTCA 59.508 45.455 0.00 0.00 33.82 2.57
698 724 4.098960 TCCTAACCATACGATCTGAACACC 59.901 45.833 0.00 0.00 0.00 4.16
699 725 5.258456 TCCTAACCATACGATCTGAACAC 57.742 43.478 0.00 0.00 0.00 3.32
713 739 3.904800 TCGCAAGATTGATCCTAACCA 57.095 42.857 0.00 0.00 45.01 3.67
729 755 1.372499 GCTCACGGTAACTGTCGCA 60.372 57.895 0.00 0.00 0.00 5.10
755 781 3.830744 TCTGGACCGTTCTTTCTCAAA 57.169 42.857 0.00 0.00 0.00 2.69
757 783 5.477607 TTAATCTGGACCGTTCTTTCTCA 57.522 39.130 0.00 0.00 0.00 3.27
758 784 6.106673 TCATTAATCTGGACCGTTCTTTCTC 58.893 40.000 0.00 0.00 0.00 2.87
759 785 6.049955 TCATTAATCTGGACCGTTCTTTCT 57.950 37.500 0.00 0.00 0.00 2.52
760 786 6.927294 ATCATTAATCTGGACCGTTCTTTC 57.073 37.500 0.00 0.00 0.00 2.62
761 787 7.827236 TGTTATCATTAATCTGGACCGTTCTTT 59.173 33.333 0.00 0.00 0.00 2.52
762 788 7.280205 GTGTTATCATTAATCTGGACCGTTCTT 59.720 37.037 0.00 0.00 0.00 2.52
766 792 5.365619 GGTGTTATCATTAATCTGGACCGT 58.634 41.667 0.00 0.00 0.00 4.83
768 794 4.213482 GCGGTGTTATCATTAATCTGGACC 59.787 45.833 0.00 0.00 0.00 4.46
769 795 4.213482 GGCGGTGTTATCATTAATCTGGAC 59.787 45.833 0.00 0.00 0.00 4.02
770 796 4.385825 GGCGGTGTTATCATTAATCTGGA 58.614 43.478 0.00 0.00 0.00 3.86
771 797 3.502211 GGGCGGTGTTATCATTAATCTGG 59.498 47.826 0.00 0.00 0.00 3.86
773 799 3.070446 TCGGGCGGTGTTATCATTAATCT 59.930 43.478 0.00 0.00 0.00 2.40
775 801 3.135994 GTCGGGCGGTGTTATCATTAAT 58.864 45.455 0.00 0.00 0.00 1.40
778 804 0.250793 TGTCGGGCGGTGTTATCATT 59.749 50.000 0.00 0.00 0.00 2.57
779 805 0.468226 ATGTCGGGCGGTGTTATCAT 59.532 50.000 0.00 0.00 0.00 2.45
780 806 0.250793 AATGTCGGGCGGTGTTATCA 59.749 50.000 0.00 0.00 0.00 2.15
781 807 0.655733 CAATGTCGGGCGGTGTTATC 59.344 55.000 0.00 0.00 0.00 1.75
783 809 2.036006 GCAATGTCGGGCGGTGTTA 61.036 57.895 0.00 0.00 0.00 2.41
784 810 3.361977 GCAATGTCGGGCGGTGTT 61.362 61.111 0.00 0.00 0.00 3.32
785 811 4.634703 TGCAATGTCGGGCGGTGT 62.635 61.111 0.00 0.00 0.00 4.16
786 812 3.326889 CTTGCAATGTCGGGCGGTG 62.327 63.158 0.00 0.00 0.00 4.94
787 813 3.055719 CTTGCAATGTCGGGCGGT 61.056 61.111 0.00 0.00 0.00 5.68
788 814 4.481112 GCTTGCAATGTCGGGCGG 62.481 66.667 0.00 0.00 0.00 6.13
792 818 1.001487 TCTGTTTGCTTGCAATGTCGG 60.001 47.619 8.93 8.10 0.00 4.79
793 819 2.046313 GTCTGTTTGCTTGCAATGTCG 58.954 47.619 8.93 0.00 0.00 4.35
794 820 3.082698 TGTCTGTTTGCTTGCAATGTC 57.917 42.857 8.93 4.30 0.00 3.06
795 821 3.523606 TTGTCTGTTTGCTTGCAATGT 57.476 38.095 8.93 0.00 0.00 2.71
796 822 3.617706 TGTTTGTCTGTTTGCTTGCAATG 59.382 39.130 8.93 3.57 0.00 2.82
797 823 3.618150 GTGTTTGTCTGTTTGCTTGCAAT 59.382 39.130 8.93 0.00 0.00 3.56
798 824 2.992543 GTGTTTGTCTGTTTGCTTGCAA 59.007 40.909 3.70 3.70 0.00 4.08
799 825 2.605030 GTGTTTGTCTGTTTGCTTGCA 58.395 42.857 0.00 0.00 0.00 4.08
800 826 1.583404 CGTGTTTGTCTGTTTGCTTGC 59.417 47.619 0.00 0.00 0.00 4.01
801 827 2.845967 GACGTGTTTGTCTGTTTGCTTG 59.154 45.455 0.00 0.00 35.95 4.01
802 828 2.475519 CGACGTGTTTGTCTGTTTGCTT 60.476 45.455 0.00 0.00 36.71 3.91
803 829 1.062002 CGACGTGTTTGTCTGTTTGCT 59.938 47.619 0.00 0.00 36.71 3.91
804 830 1.452717 CGACGTGTTTGTCTGTTTGC 58.547 50.000 0.00 0.00 36.71 3.68
805 831 1.267832 CCCGACGTGTTTGTCTGTTTG 60.268 52.381 0.00 0.00 36.71 2.93
806 832 1.011333 CCCGACGTGTTTGTCTGTTT 58.989 50.000 0.00 0.00 36.71 2.83
807 833 0.108041 ACCCGACGTGTTTGTCTGTT 60.108 50.000 0.00 0.00 36.71 3.16
808 834 0.746063 TACCCGACGTGTTTGTCTGT 59.254 50.000 0.00 0.00 36.71 3.41
809 835 1.415374 CTACCCGACGTGTTTGTCTG 58.585 55.000 0.00 0.00 36.71 3.51
810 836 0.319297 GCTACCCGACGTGTTTGTCT 60.319 55.000 0.00 0.00 36.71 3.41
811 837 0.598158 TGCTACCCGACGTGTTTGTC 60.598 55.000 0.00 0.00 35.49 3.18
812 838 0.034337 ATGCTACCCGACGTGTTTGT 59.966 50.000 0.00 0.00 0.00 2.83
813 839 1.127951 GAATGCTACCCGACGTGTTTG 59.872 52.381 0.00 0.00 0.00 2.93
814 840 1.270412 TGAATGCTACCCGACGTGTTT 60.270 47.619 0.00 0.00 0.00 2.83
815 841 0.319083 TGAATGCTACCCGACGTGTT 59.681 50.000 0.00 0.00 0.00 3.32
816 842 0.535335 ATGAATGCTACCCGACGTGT 59.465 50.000 0.00 0.00 0.00 4.49
817 843 1.209128 GATGAATGCTACCCGACGTG 58.791 55.000 0.00 0.00 0.00 4.49
818 844 0.248907 CGATGAATGCTACCCGACGT 60.249 55.000 0.00 0.00 0.00 4.34
819 845 0.939577 CCGATGAATGCTACCCGACG 60.940 60.000 0.00 0.00 0.00 5.12
820 846 1.222115 GCCGATGAATGCTACCCGAC 61.222 60.000 0.00 0.00 0.00 4.79
821 847 1.069090 GCCGATGAATGCTACCCGA 59.931 57.895 0.00 0.00 0.00 5.14
822 848 2.310233 CGCCGATGAATGCTACCCG 61.310 63.158 0.00 0.00 0.00 5.28
823 849 1.069090 TCGCCGATGAATGCTACCC 59.931 57.895 0.00 0.00 0.00 3.69
824 850 0.529773 TGTCGCCGATGAATGCTACC 60.530 55.000 0.00 0.00 0.00 3.18
825 851 0.855349 CTGTCGCCGATGAATGCTAC 59.145 55.000 0.00 0.00 0.00 3.58
826 852 0.875908 GCTGTCGCCGATGAATGCTA 60.876 55.000 0.00 0.00 0.00 3.49
827 853 2.176273 GCTGTCGCCGATGAATGCT 61.176 57.895 0.00 0.00 0.00 3.79
890 916 4.513442 GATGTTGCTGTACTGGTGGATTA 58.487 43.478 1.65 0.00 0.00 1.75
1225 1290 1.946156 CGATGATGTCGTGGGAGCG 60.946 63.158 0.00 0.00 45.19 5.03
1401 1466 2.452491 AGGGCCAGAAGGTTGGGT 60.452 61.111 6.18 0.00 38.72 4.51
1764 1829 0.120377 TGGTCTTGGTGGGGAGGTAT 59.880 55.000 0.00 0.00 0.00 2.73
1857 1929 1.079057 GTCCTTGGACTCCTTCGCC 60.079 63.158 12.20 0.00 0.00 5.54
1860 1932 1.477295 CCGTAGTCCTTGGACTCCTTC 59.523 57.143 23.80 12.73 36.68 3.46
1867 1939 1.180456 TCGTTGCCGTAGTCCTTGGA 61.180 55.000 0.00 0.00 35.01 3.53
1872 1944 2.442084 CAAGTCGTTGCCGTAGTCC 58.558 57.895 0.00 0.00 35.01 3.85
1986 2058 1.584495 GTGCCCGGCGAAGAAAAAT 59.416 52.632 9.30 0.00 0.00 1.82
2162 2246 1.073923 GTTCAGAATGGTGGGACAGGT 59.926 52.381 0.00 0.00 33.40 4.00
2172 2256 4.406649 AGGGCATTATTTGGTTCAGAATGG 59.593 41.667 0.00 0.00 36.16 3.16
2181 2265 4.227300 TCACTAGTCAGGGCATTATTTGGT 59.773 41.667 0.00 0.00 0.00 3.67
2186 2270 4.033709 AGTGTCACTAGTCAGGGCATTAT 58.966 43.478 2.87 0.00 0.00 1.28
2218 2315 3.524541 CCATCATCGATCACAACTCACA 58.475 45.455 0.00 0.00 0.00 3.58
2219 2316 2.286294 GCCATCATCGATCACAACTCAC 59.714 50.000 0.00 0.00 0.00 3.51
2220 2317 2.093553 TGCCATCATCGATCACAACTCA 60.094 45.455 0.00 0.00 0.00 3.41
2221 2318 2.543012 CTGCCATCATCGATCACAACTC 59.457 50.000 0.00 0.00 0.00 3.01
2222 2319 2.169144 TCTGCCATCATCGATCACAACT 59.831 45.455 0.00 0.00 0.00 3.16
2223 2320 2.286294 GTCTGCCATCATCGATCACAAC 59.714 50.000 0.00 0.00 0.00 3.32
2224 2321 2.093553 TGTCTGCCATCATCGATCACAA 60.094 45.455 0.00 0.00 0.00 3.33
2245 2342 3.444916 CGTCTCGTATAGCACCATTGTT 58.555 45.455 0.00 0.00 0.00 2.83
2281 2378 1.950630 CGCGATCATGATCACCGCA 60.951 57.895 30.13 0.00 45.32 5.69
2344 2441 1.199615 TCATGGTGATCGTGCCCTTA 58.800 50.000 0.00 0.00 32.54 2.69
2371 2468 3.469970 TCCCGGTGCATCATCGCT 61.470 61.111 0.00 0.00 36.57 4.93
2527 2624 3.145551 GCCTTGGCCTCCAGCATG 61.146 66.667 3.32 0.00 46.50 4.06
2698 2796 6.091169 CGCTAGTGTACTTCTACTATAGGAGC 59.909 46.154 7.15 0.00 34.60 4.70
2701 2799 5.642919 CCCGCTAGTGTACTTCTACTATAGG 59.357 48.000 4.43 0.73 0.00 2.57
2772 2879 8.263940 TGTCCAATACACTATTTAAGCAGAAC 57.736 34.615 0.00 0.00 31.43 3.01
2776 2883 9.237187 TGAATTGTCCAATACACTATTTAAGCA 57.763 29.630 0.00 0.00 38.00 3.91
2808 2915 6.421377 ACAACAAAAGAAAACAAGCCAATC 57.579 33.333 0.00 0.00 0.00 2.67
2814 2921 7.171678 TGGGTACAAACAACAAAAGAAAACAAG 59.828 33.333 0.00 0.00 0.00 3.16
2817 2924 7.413548 CCATGGGTACAAACAACAAAAGAAAAC 60.414 37.037 2.85 0.00 0.00 2.43
2857 2970 3.843177 TTGAATGGATTTGGAAGGGGA 57.157 42.857 0.00 0.00 0.00 4.81
2887 3000 9.739276 ACATCAACAGAAAATTATGAGTCCTTA 57.261 29.630 0.00 0.00 0.00 2.69
2889 3002 9.739276 TTACATCAACAGAAAATTATGAGTCCT 57.261 29.630 0.00 0.00 0.00 3.85
2897 3010 6.083630 GTGCGCTTACATCAACAGAAAATTA 58.916 36.000 9.73 0.00 0.00 1.40
2905 3018 2.217750 ACTTGTGCGCTTACATCAACA 58.782 42.857 9.73 0.00 0.00 3.33
2918 3031 6.140108 CACGTACAAAAATGTAAGACTTGTGC 59.860 38.462 8.53 0.00 32.69 4.57
2924 3037 6.424812 AGGTACCACGTACAAAAATGTAAGAC 59.575 38.462 15.94 0.00 40.41 3.01
2934 3047 7.982761 AAATTATTCAGGTACCACGTACAAA 57.017 32.000 15.94 0.00 40.41 2.83
2959 3072 4.170292 GCTTCTTGCACTTGATGACATT 57.830 40.909 0.00 0.00 42.31 2.71
2994 3107 2.961062 GGATGCTGATATGGTGGCTTTT 59.039 45.455 0.00 0.00 0.00 2.27
3052 3165 8.427902 TGCTCTGAGTATAGATTTGGTGATAT 57.572 34.615 6.53 0.00 0.00 1.63
3085 3198 7.890655 GGGCTATGGAAGAATTATTGGACTATT 59.109 37.037 0.00 0.00 0.00 1.73
3103 3216 9.606631 GTATAATATCTTCTCAAAGGGCTATGG 57.393 37.037 0.00 0.00 33.03 2.74
3117 3230 9.047947 ACCTAATCACCCCAGTATAATATCTTC 57.952 37.037 0.00 0.00 0.00 2.87
3130 3243 5.586155 TTTGTTCTTACCTAATCACCCCA 57.414 39.130 0.00 0.00 0.00 4.96
3158 3271 8.682710 ACTAATGTTGAAACTAAAAAGACAGCA 58.317 29.630 0.00 0.00 0.00 4.41
3197 3316 7.108194 TCATCATTCAGGATATATGAAGTGCC 58.892 38.462 8.38 0.00 39.86 5.01
3225 3351 2.957402 AGGATTTCAGTTGAGGCACA 57.043 45.000 0.00 0.00 0.00 4.57
3226 3352 5.904362 AAATAGGATTTCAGTTGAGGCAC 57.096 39.130 0.00 0.00 0.00 5.01
3229 3355 9.844257 AGAGATAAAATAGGATTTCAGTTGAGG 57.156 33.333 0.00 0.00 0.00 3.86
3258 3384 4.656112 AGACTACCAACTCTCCCATTATGG 59.344 45.833 3.85 3.85 37.25 2.74
3260 3386 5.396884 GCAAGACTACCAACTCTCCCATTAT 60.397 44.000 0.00 0.00 0.00 1.28
3268 3394 2.300437 GTGAGGCAAGACTACCAACTCT 59.700 50.000 0.00 0.00 0.00 3.24
3275 3401 1.623811 TGGAAGGTGAGGCAAGACTAC 59.376 52.381 0.00 0.00 0.00 2.73
3282 3408 0.038166 GATTGGTGGAAGGTGAGGCA 59.962 55.000 0.00 0.00 0.00 4.75
3283 3409 0.681243 GGATTGGTGGAAGGTGAGGC 60.681 60.000 0.00 0.00 0.00 4.70
3292 3418 4.836175 TGAGCGTAATATAGGATTGGTGGA 59.164 41.667 0.00 0.00 0.00 4.02
3301 3427 4.213694 AGACACTCGTGAGCGTAATATAGG 59.786 45.833 3.74 0.00 39.49 2.57
3328 3454 2.571206 CGCTTAAGCAAAAGACCGTTC 58.429 47.619 26.29 0.00 42.21 3.95
3329 3455 1.334689 GCGCTTAAGCAAAAGACCGTT 60.335 47.619 26.29 0.00 42.21 4.44
3330 3456 0.237498 GCGCTTAAGCAAAAGACCGT 59.763 50.000 26.29 0.00 42.21 4.83
3331 3457 0.789383 CGCGCTTAAGCAAAAGACCG 60.789 55.000 26.29 12.35 42.21 4.79
3332 3458 0.515564 TCGCGCTTAAGCAAAAGACC 59.484 50.000 26.29 5.10 42.21 3.85
3333 3459 1.592336 GTCGCGCTTAAGCAAAAGAC 58.408 50.000 26.29 21.91 42.21 3.01
3343 3469 2.395360 GCCAACATGGTCGCGCTTA 61.395 57.895 5.56 0.00 40.46 3.09
3351 3477 3.903281 AATGGGCCGCCAACATGGT 62.903 57.895 12.58 0.00 40.46 3.55
3360 3486 1.593209 CATGCATCAAATGGGCCGC 60.593 57.895 0.00 0.00 0.00 6.53
3369 3496 6.210287 TGATTGAGTAAATGCATGCATCAA 57.790 33.333 32.25 29.23 35.31 2.57
3373 3500 4.674885 CGGTTGATTGAGTAAATGCATGCA 60.675 41.667 25.04 25.04 0.00 3.96
3383 3510 2.851263 AAGTGCCGGTTGATTGAGTA 57.149 45.000 1.90 0.00 0.00 2.59
3391 3518 0.461961 TTTTGGGAAAGTGCCGGTTG 59.538 50.000 1.90 0.00 0.00 3.77
3397 3525 2.190161 GACGTTGTTTTGGGAAAGTGC 58.810 47.619 0.00 0.00 0.00 4.40
3414 3542 6.488817 TGATTTGAATGAGTAATGCATGACG 58.511 36.000 8.61 0.00 0.00 4.35
3417 3545 9.529325 AGATTTGATTTGAATGAGTAATGCATG 57.471 29.630 0.00 0.00 0.00 4.06
3453 3581 9.874205 CCATTTGATTAAAGTTGATGTATTGGT 57.126 29.630 0.00 0.00 0.00 3.67
3454 3582 9.874205 ACCATTTGATTAAAGTTGATGTATTGG 57.126 29.630 0.00 0.00 0.00 3.16
3456 3584 9.874205 CCACCATTTGATTAAAGTTGATGTATT 57.126 29.630 0.00 0.00 0.00 1.89
3457 3585 9.034800 ACCACCATTTGATTAAAGTTGATGTAT 57.965 29.630 0.00 0.00 0.00 2.29
3458 3586 8.303156 CACCACCATTTGATTAAAGTTGATGTA 58.697 33.333 0.00 0.00 0.00 2.29
3459 3587 7.153985 CACCACCATTTGATTAAAGTTGATGT 58.846 34.615 0.00 0.00 0.00 3.06
3460 3588 6.591062 CCACCACCATTTGATTAAAGTTGATG 59.409 38.462 0.00 0.00 0.00 3.07
3461 3589 6.295802 CCCACCACCATTTGATTAAAGTTGAT 60.296 38.462 0.00 0.00 0.00 2.57
3462 3590 5.011533 CCCACCACCATTTGATTAAAGTTGA 59.988 40.000 0.00 0.00 0.00 3.18
3463 3591 5.237048 CCCACCACCATTTGATTAAAGTTG 58.763 41.667 0.00 0.00 0.00 3.16
3464 3592 4.262851 GCCCACCACCATTTGATTAAAGTT 60.263 41.667 0.00 0.00 0.00 2.66
3465 3593 3.260632 GCCCACCACCATTTGATTAAAGT 59.739 43.478 0.00 0.00 0.00 2.66
3466 3594 3.369366 GGCCCACCACCATTTGATTAAAG 60.369 47.826 0.00 0.00 35.26 1.85
3467 3595 2.569404 GGCCCACCACCATTTGATTAAA 59.431 45.455 0.00 0.00 35.26 1.52
3468 3596 2.183679 GGCCCACCACCATTTGATTAA 58.816 47.619 0.00 0.00 35.26 1.40
3469 3597 1.621072 GGGCCCACCACCATTTGATTA 60.621 52.381 19.95 0.00 39.85 1.75
3470 3598 0.909133 GGGCCCACCACCATTTGATT 60.909 55.000 19.95 0.00 39.85 2.57
3471 3599 1.306056 GGGCCCACCACCATTTGAT 60.306 57.895 19.95 0.00 39.85 2.57
3472 3600 2.119391 GGGCCCACCACCATTTGA 59.881 61.111 19.95 0.00 39.85 2.69
3473 3601 2.203758 TGGGCCCACCACCATTTG 60.204 61.111 24.45 0.00 46.80 2.32
3481 3609 1.370810 CACAACAAATGGGCCCACC 59.629 57.895 31.51 0.00 40.81 4.61
3482 3610 0.249826 CACACAACAAATGGGCCCAC 60.250 55.000 31.51 0.00 35.04 4.61
3483 3611 2.037620 GCACACAACAAATGGGCCCA 62.038 55.000 30.92 30.92 40.82 5.36
3484 3612 1.301637 GCACACAACAAATGGGCCC 60.302 57.895 17.59 17.59 40.82 5.80
3485 3613 1.664333 CGCACACAACAAATGGGCC 60.664 57.895 0.00 0.00 43.96 5.80
3486 3614 2.309501 GCGCACACAACAAATGGGC 61.310 57.895 0.30 0.00 43.37 5.36
3487 3615 0.664166 GAGCGCACACAACAAATGGG 60.664 55.000 11.47 0.00 38.89 4.00
3488 3616 0.030504 TGAGCGCACACAACAAATGG 59.969 50.000 11.47 0.00 0.00 3.16
3489 3617 2.054687 ATGAGCGCACACAACAAATG 57.945 45.000 10.42 0.00 0.00 2.32
3490 3618 2.294233 AGAATGAGCGCACACAACAAAT 59.706 40.909 10.42 0.00 0.00 2.32
3491 3619 1.675483 AGAATGAGCGCACACAACAAA 59.325 42.857 10.42 0.00 0.00 2.83
3492 3620 1.308047 AGAATGAGCGCACACAACAA 58.692 45.000 10.42 0.00 0.00 2.83
3493 3621 1.308047 AAGAATGAGCGCACACAACA 58.692 45.000 10.42 0.00 0.00 3.33
3494 3622 3.747099 ATAAGAATGAGCGCACACAAC 57.253 42.857 10.42 4.71 0.00 3.32
3495 3623 4.764679 AAATAAGAATGAGCGCACACAA 57.235 36.364 10.42 0.00 0.00 3.33
3496 3624 4.455533 AGAAAATAAGAATGAGCGCACACA 59.544 37.500 10.42 7.06 0.00 3.72
3497 3625 4.974591 AGAAAATAAGAATGAGCGCACAC 58.025 39.130 10.42 0.00 0.00 3.82
3498 3626 5.627499 AAGAAAATAAGAATGAGCGCACA 57.373 34.783 10.65 10.65 0.00 4.57
3499 3627 5.858581 ACAAAGAAAATAAGAATGAGCGCAC 59.141 36.000 11.47 3.13 0.00 5.34
3500 3628 6.012658 ACAAAGAAAATAAGAATGAGCGCA 57.987 33.333 11.47 0.00 0.00 6.09
3501 3629 6.934561 AACAAAGAAAATAAGAATGAGCGC 57.065 33.333 0.00 0.00 0.00 5.92
3548 3676 9.912634 GATTTGTCATAGAAAAATGAAACAGGA 57.087 29.630 0.14 0.00 37.61 3.86
3549 3677 9.918630 AGATTTGTCATAGAAAAATGAAACAGG 57.081 29.630 0.14 0.00 37.61 4.00
3566 3694 9.624697 GCTGAACACAAAATAATAGATTTGTCA 57.375 29.630 1.21 0.00 45.31 3.58
3567 3695 9.624697 TGCTGAACACAAAATAATAGATTTGTC 57.375 29.630 1.21 0.00 45.31 3.18
3577 3705 8.892723 CCTGATAGTATGCTGAACACAAAATAA 58.107 33.333 0.00 0.00 0.00 1.40
3578 3706 8.264347 TCCTGATAGTATGCTGAACACAAAATA 58.736 33.333 0.00 0.00 0.00 1.40
3579 3707 7.112122 TCCTGATAGTATGCTGAACACAAAAT 58.888 34.615 0.00 0.00 0.00 1.82
3580 3708 6.472016 TCCTGATAGTATGCTGAACACAAAA 58.528 36.000 0.00 0.00 0.00 2.44
3581 3709 6.048732 TCCTGATAGTATGCTGAACACAAA 57.951 37.500 0.00 0.00 0.00 2.83
3582 3710 5.675684 TCCTGATAGTATGCTGAACACAA 57.324 39.130 0.00 0.00 0.00 3.33
3583 3711 5.507985 CGATCCTGATAGTATGCTGAACACA 60.508 44.000 0.00 0.00 0.00 3.72
3584 3712 4.920340 CGATCCTGATAGTATGCTGAACAC 59.080 45.833 0.00 0.00 0.00 3.32
3585 3713 4.827284 TCGATCCTGATAGTATGCTGAACA 59.173 41.667 0.00 0.00 0.00 3.18
3586 3714 5.157781 GTCGATCCTGATAGTATGCTGAAC 58.842 45.833 0.00 0.00 0.00 3.18
3587 3715 4.827284 TGTCGATCCTGATAGTATGCTGAA 59.173 41.667 0.00 0.00 0.00 3.02
3588 3716 4.216472 GTGTCGATCCTGATAGTATGCTGA 59.784 45.833 0.00 0.00 0.00 4.26
3589 3717 4.217334 AGTGTCGATCCTGATAGTATGCTG 59.783 45.833 0.00 0.00 0.00 4.41
3590 3718 4.402829 AGTGTCGATCCTGATAGTATGCT 58.597 43.478 0.00 0.00 0.00 3.79
3591 3719 4.775058 AGTGTCGATCCTGATAGTATGC 57.225 45.455 0.00 0.00 0.00 3.14
3592 3720 6.153067 GGAAAGTGTCGATCCTGATAGTATG 58.847 44.000 0.00 0.00 0.00 2.39
3593 3721 5.244178 GGGAAAGTGTCGATCCTGATAGTAT 59.756 44.000 2.20 0.00 33.61 2.12
3594 3722 4.583489 GGGAAAGTGTCGATCCTGATAGTA 59.417 45.833 2.20 0.00 33.61 1.82
3595 3723 3.385111 GGGAAAGTGTCGATCCTGATAGT 59.615 47.826 2.20 0.00 33.61 2.12
3596 3724 3.384789 TGGGAAAGTGTCGATCCTGATAG 59.615 47.826 2.20 0.00 33.61 2.08
3597 3725 3.371034 TGGGAAAGTGTCGATCCTGATA 58.629 45.455 2.20 0.00 33.61 2.15
3598 3726 2.187958 TGGGAAAGTGTCGATCCTGAT 58.812 47.619 2.20 0.00 33.61 2.90
3599 3727 1.639722 TGGGAAAGTGTCGATCCTGA 58.360 50.000 2.20 0.00 33.61 3.86
3600 3728 2.472695 TTGGGAAAGTGTCGATCCTG 57.527 50.000 2.20 0.00 33.61 3.86
3601 3729 2.876079 GCTTTGGGAAAGTGTCGATCCT 60.876 50.000 2.20 0.00 40.64 3.24
3602 3730 1.468914 GCTTTGGGAAAGTGTCGATCC 59.531 52.381 0.00 0.00 40.64 3.36
3603 3731 2.151202 TGCTTTGGGAAAGTGTCGATC 58.849 47.619 0.00 0.00 40.64 3.69
3604 3732 2.270352 TGCTTTGGGAAAGTGTCGAT 57.730 45.000 0.00 0.00 40.64 3.59
3605 3733 2.045561 TTGCTTTGGGAAAGTGTCGA 57.954 45.000 0.00 0.00 40.64 4.20
3606 3734 2.861462 TTTGCTTTGGGAAAGTGTCG 57.139 45.000 0.00 0.00 40.64 4.35
3607 3735 4.058124 GGATTTTGCTTTGGGAAAGTGTC 58.942 43.478 0.00 0.00 40.64 3.67
3608 3736 3.454082 TGGATTTTGCTTTGGGAAAGTGT 59.546 39.130 0.00 0.00 40.64 3.55
3609 3737 4.070630 TGGATTTTGCTTTGGGAAAGTG 57.929 40.909 0.00 0.00 40.64 3.16
3610 3738 4.769345 TTGGATTTTGCTTTGGGAAAGT 57.231 36.364 0.00 0.00 40.64 2.66
3611 3739 5.307204 TGATTGGATTTTGCTTTGGGAAAG 58.693 37.500 0.00 0.00 41.46 2.62
3612 3740 5.301835 TGATTGGATTTTGCTTTGGGAAA 57.698 34.783 0.00 0.00 0.00 3.13
3613 3741 4.970860 TGATTGGATTTTGCTTTGGGAA 57.029 36.364 0.00 0.00 0.00 3.97
3614 3742 4.970860 TTGATTGGATTTTGCTTTGGGA 57.029 36.364 0.00 0.00 0.00 4.37
3615 3743 6.383415 CAATTTGATTGGATTTTGCTTTGGG 58.617 36.000 0.00 0.00 36.63 4.12
3629 3757 4.005487 TGGGAAAGTGCCAATTTGATTG 57.995 40.909 0.00 0.00 33.84 2.67
3630 3758 4.703379 TTGGGAAAGTGCCAATTTGATT 57.297 36.364 0.00 0.00 43.15 2.57
3637 3765 1.208293 GTTGGTTTGGGAAAGTGCCAA 59.792 47.619 0.00 0.00 46.43 4.52
3638 3766 0.827368 GTTGGTTTGGGAAAGTGCCA 59.173 50.000 0.00 0.00 35.47 4.92
3639 3767 0.249280 CGTTGGTTTGGGAAAGTGCC 60.249 55.000 0.00 0.00 0.00 5.01
3640 3768 0.458260 ACGTTGGTTTGGGAAAGTGC 59.542 50.000 0.00 0.00 0.00 4.40
3641 3769 1.746220 TGACGTTGGTTTGGGAAAGTG 59.254 47.619 0.00 0.00 0.00 3.16
3642 3770 2.131776 TGACGTTGGTTTGGGAAAGT 57.868 45.000 0.00 0.00 0.00 2.66
3643 3771 2.862140 GCATGACGTTGGTTTGGGAAAG 60.862 50.000 0.00 0.00 0.00 2.62
3644 3772 1.067821 GCATGACGTTGGTTTGGGAAA 59.932 47.619 0.00 0.00 0.00 3.13
3645 3773 0.671251 GCATGACGTTGGTTTGGGAA 59.329 50.000 0.00 0.00 0.00 3.97
3646 3774 0.466372 TGCATGACGTTGGTTTGGGA 60.466 50.000 0.00 0.00 0.00 4.37
3647 3775 0.602562 ATGCATGACGTTGGTTTGGG 59.397 50.000 0.00 0.00 0.00 4.12
3648 3776 2.437200 AATGCATGACGTTGGTTTGG 57.563 45.000 0.00 0.00 0.00 3.28
3649 3777 4.545610 AGTTAATGCATGACGTTGGTTTG 58.454 39.130 0.00 0.00 0.00 2.93
3650 3778 4.277174 TGAGTTAATGCATGACGTTGGTTT 59.723 37.500 0.00 0.00 0.00 3.27
3651 3779 3.818210 TGAGTTAATGCATGACGTTGGTT 59.182 39.130 0.00 0.00 0.00 3.67
3652 3780 3.407698 TGAGTTAATGCATGACGTTGGT 58.592 40.909 0.00 0.00 0.00 3.67
3653 3781 4.418013 TTGAGTTAATGCATGACGTTGG 57.582 40.909 0.00 0.00 0.00 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.