Multiple sequence alignment - TraesCS7D01G154500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G154500 chr7D 100.000 4544 0 0 1 4544 102536242 102540785 0.000000e+00 8392.0
1 TraesCS7D01G154500 chr7D 84.286 210 17 11 138 341 52484300 52484499 1.670000e-44 191.0
2 TraesCS7D01G154500 chr7A 94.845 1940 61 14 1791 3719 106679045 106680956 0.000000e+00 2992.0
3 TraesCS7D01G154500 chr7A 95.000 640 17 5 1159 1794 106678351 106678979 0.000000e+00 990.0
4 TraesCS7D01G154500 chr7A 84.898 927 85 26 127 1029 680565198 680564303 0.000000e+00 885.0
5 TraesCS7D01G154500 chr7A 87.879 726 36 17 3643 4347 106680954 106681648 0.000000e+00 806.0
6 TraesCS7D01G154500 chr7A 93.966 116 3 2 1054 1168 106642386 106642498 6.040000e-39 172.0
7 TraesCS7D01G154500 chr7B 94.393 1837 63 20 1142 2949 59742156 59743981 0.000000e+00 2785.0
8 TraesCS7D01G154500 chr7B 86.726 113 6 1 8 111 649403029 649402917 2.870000e-22 117.0
9 TraesCS7D01G154500 chr7B 84.874 119 7 3 1 111 650643657 650643772 4.810000e-20 110.0
10 TraesCS7D01G154500 chr3D 91.948 919 50 12 127 1029 602075247 602074337 0.000000e+00 1266.0
11 TraesCS7D01G154500 chr3D 82.033 423 60 13 2821 3238 498393502 498393091 3.370000e-91 346.0
12 TraesCS7D01G154500 chr3B 91.068 918 61 11 125 1029 740886192 740887101 0.000000e+00 1221.0
13 TraesCS7D01G154500 chr3B 90.929 915 62 15 127 1029 16676367 16675462 0.000000e+00 1210.0
14 TraesCS7D01G154500 chr3B 89.720 856 67 13 190 1029 602480436 602479586 0.000000e+00 1074.0
15 TraesCS7D01G154500 chr3B 89.891 732 31 16 127 836 800142870 800143580 0.000000e+00 902.0
16 TraesCS7D01G154500 chr3B 84.716 229 25 7 827 1050 800145083 800144860 2.130000e-53 220.0
17 TraesCS7D01G154500 chr6B 90.840 917 66 12 127 1029 118974608 118975520 0.000000e+00 1212.0
18 TraesCS7D01G154500 chr6B 91.476 786 50 11 247 1029 371609370 371610141 0.000000e+00 1064.0
19 TraesCS7D01G154500 chr6B 86.587 917 51 22 127 1029 52031062 52031920 0.000000e+00 946.0
20 TraesCS7D01G154500 chr1B 90.196 918 58 14 126 1029 628102930 628102031 0.000000e+00 1168.0
21 TraesCS7D01G154500 chr1B 89.157 498 41 10 2298 2785 594492620 594492126 3.890000e-170 608.0
22 TraesCS7D01G154500 chr1B 85.060 415 43 12 1862 2266 594493027 594492622 5.470000e-109 405.0
23 TraesCS7D01G154500 chr1B 88.732 142 15 1 1391 1531 594493400 594493259 6.040000e-39 172.0
24 TraesCS7D01G154500 chr1B 83.688 141 16 3 1213 1348 594493541 594493403 4.770000e-25 126.0
25 TraesCS7D01G154500 chr1B 94.000 50 3 0 62 111 150208554 150208603 4.870000e-10 76.8
26 TraesCS7D01G154500 chr5A 89.689 931 55 19 127 1029 293500639 293501556 0.000000e+00 1149.0
27 TraesCS7D01G154500 chr5A 78.947 418 73 11 2825 3238 232836605 232836199 2.080000e-68 270.0
28 TraesCS7D01G154500 chr5A 83.710 221 29 7 1970 2186 30215286 30215069 7.710000e-48 202.0
29 TraesCS7D01G154500 chr5A 97.015 67 2 0 1403 1469 30215816 30215750 3.720000e-21 113.0
30 TraesCS7D01G154500 chr2B 89.554 919 50 18 127 1029 706193628 706194516 0.000000e+00 1123.0
31 TraesCS7D01G154500 chr2B 84.146 410 53 11 2824 3229 383373965 383374366 1.980000e-103 387.0
32 TraesCS7D01G154500 chr2B 85.047 321 39 7 2825 3141 652599957 652600272 7.340000e-83 318.0
33 TraesCS7D01G154500 chr6A 88.503 922 67 19 127 1029 416187 417088 0.000000e+00 1079.0
34 TraesCS7D01G154500 chr6A 85.714 112 5 2 9 111 22805800 22805691 1.730000e-19 108.0
35 TraesCS7D01G154500 chr4D 92.782 665 42 6 367 1029 306298460 306297800 0.000000e+00 957.0
36 TraesCS7D01G154500 chr4D 83.456 272 21 10 1287 1549 508644308 508644564 9.830000e-57 231.0
37 TraesCS7D01G154500 chr4D 83.254 209 29 4 1967 2170 508643172 508642965 2.160000e-43 187.0
38 TraesCS7D01G154500 chr4D 74.332 374 72 19 2353 2710 508585862 508586227 2.200000e-28 137.0
39 TraesCS7D01G154500 chr4D 90.909 99 9 0 1371 1469 508643715 508643617 2.850000e-27 134.0
40 TraesCS7D01G154500 chr5B 88.575 744 56 13 125 843 369333612 369334351 0.000000e+00 876.0
41 TraesCS7D01G154500 chr5B 78.947 418 72 11 2825 3238 190122521 190122116 2.080000e-68 270.0
42 TraesCS7D01G154500 chr5B 87.719 114 3 3 8 111 331255245 331255133 6.170000e-24 122.0
43 TraesCS7D01G154500 chr4B 86.645 614 52 18 2241 2826 659052288 659052899 0.000000e+00 652.0
44 TraesCS7D01G154500 chr4B 88.816 456 33 13 1773 2215 659051842 659052292 1.110000e-150 544.0
45 TraesCS7D01G154500 chr4B 84.211 171 17 8 1139 1305 659004080 659004244 1.690000e-34 158.0
46 TraesCS7D01G154500 chr1A 87.747 506 41 12 2298 2785 535078980 535078478 5.100000e-159 571.0
47 TraesCS7D01G154500 chr1A 86.207 406 44 8 1870 2266 535079384 535078982 3.250000e-116 429.0
48 TraesCS7D01G154500 chr1A 78.897 417 65 18 2825 3235 38740170 38740569 1.250000e-65 261.0
49 TraesCS7D01G154500 chr1D 87.549 506 42 12 2298 2785 438582157 438581655 2.370000e-157 566.0
50 TraesCS7D01G154500 chr1D 83.397 524 62 13 1757 2266 438582671 438582159 3.200000e-126 462.0
51 TraesCS7D01G154500 chr1D 88.321 137 16 0 1389 1525 438583243 438583107 1.010000e-36 165.0
52 TraesCS7D01G154500 chr1D 85.938 128 12 2 1213 1335 438583383 438583257 1.030000e-26 132.0
53 TraesCS7D01G154500 chr5D 80.144 418 67 14 2825 3238 195652954 195652549 9.560000e-77 298.0
54 TraesCS7D01G154500 chr6D 79.859 427 65 15 2825 3241 144066035 144066450 4.450000e-75 292.0
55 TraesCS7D01G154500 chr3A 85.965 114 12 3 1 111 64069111 64068999 7.990000e-23 119.0
56 TraesCS7D01G154500 chr2A 86.458 96 8 3 20 111 36192410 36192504 2.890000e-17 100.0
57 TraesCS7D01G154500 chr2D 83.186 113 12 5 1 111 159706962 159707069 3.740000e-16 97.1
58 TraesCS7D01G154500 chr2D 82.500 120 12 2 1 111 560950865 560950746 3.740000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G154500 chr7D 102536242 102540785 4543 False 8392.00 8392 100.000000 1 4544 1 chr7D.!!$F2 4543
1 TraesCS7D01G154500 chr7A 106678351 106681648 3297 False 1596.00 2992 92.574667 1159 4347 3 chr7A.!!$F2 3188
2 TraesCS7D01G154500 chr7A 680564303 680565198 895 True 885.00 885 84.898000 127 1029 1 chr7A.!!$R1 902
3 TraesCS7D01G154500 chr7B 59742156 59743981 1825 False 2785.00 2785 94.393000 1142 2949 1 chr7B.!!$F1 1807
4 TraesCS7D01G154500 chr3D 602074337 602075247 910 True 1266.00 1266 91.948000 127 1029 1 chr3D.!!$R2 902
5 TraesCS7D01G154500 chr3B 740886192 740887101 909 False 1221.00 1221 91.068000 125 1029 1 chr3B.!!$F1 904
6 TraesCS7D01G154500 chr3B 16675462 16676367 905 True 1210.00 1210 90.929000 127 1029 1 chr3B.!!$R1 902
7 TraesCS7D01G154500 chr3B 602479586 602480436 850 True 1074.00 1074 89.720000 190 1029 1 chr3B.!!$R2 839
8 TraesCS7D01G154500 chr3B 800142870 800143580 710 False 902.00 902 89.891000 127 836 1 chr3B.!!$F2 709
9 TraesCS7D01G154500 chr6B 118974608 118975520 912 False 1212.00 1212 90.840000 127 1029 1 chr6B.!!$F2 902
10 TraesCS7D01G154500 chr6B 371609370 371610141 771 False 1064.00 1064 91.476000 247 1029 1 chr6B.!!$F3 782
11 TraesCS7D01G154500 chr6B 52031062 52031920 858 False 946.00 946 86.587000 127 1029 1 chr6B.!!$F1 902
12 TraesCS7D01G154500 chr1B 628102031 628102930 899 True 1168.00 1168 90.196000 126 1029 1 chr1B.!!$R1 903
13 TraesCS7D01G154500 chr1B 594492126 594493541 1415 True 327.75 608 86.659250 1213 2785 4 chr1B.!!$R2 1572
14 TraesCS7D01G154500 chr5A 293500639 293501556 917 False 1149.00 1149 89.689000 127 1029 1 chr5A.!!$F1 902
15 TraesCS7D01G154500 chr2B 706193628 706194516 888 False 1123.00 1123 89.554000 127 1029 1 chr2B.!!$F3 902
16 TraesCS7D01G154500 chr6A 416187 417088 901 False 1079.00 1079 88.503000 127 1029 1 chr6A.!!$F1 902
17 TraesCS7D01G154500 chr4D 306297800 306298460 660 True 957.00 957 92.782000 367 1029 1 chr4D.!!$R1 662
18 TraesCS7D01G154500 chr5B 369333612 369334351 739 False 876.00 876 88.575000 125 843 1 chr5B.!!$F1 718
19 TraesCS7D01G154500 chr4B 659051842 659052899 1057 False 598.00 652 87.730500 1773 2826 2 chr4B.!!$F2 1053
20 TraesCS7D01G154500 chr1A 535078478 535079384 906 True 500.00 571 86.977000 1870 2785 2 chr1A.!!$R1 915
21 TraesCS7D01G154500 chr1D 438581655 438583383 1728 True 331.25 566 86.301250 1213 2785 4 chr1D.!!$R1 1572

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
898 993 1.014564 GTGCAGTGGCGAGTAAGTCC 61.015 60.0 0.00 0.00 45.35 3.85 F
1079 1178 0.186386 TCCCAGGCCTTTTCGGAAAA 59.814 50.0 14.64 14.64 33.16 2.29 F
1103 1202 0.320508 AAGGAGAAACCGAGCCGAAC 60.321 55.0 0.00 0.00 44.74 3.95 F
2324 2827 0.450583 CATGCGATTTGCTGCTGACT 59.549 50.0 0.00 0.00 46.63 3.41 F
2994 3524 0.461135 GCCCGTGGTATTCTCGGTAA 59.539 55.0 0.00 0.00 42.30 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1975 2459 0.316204 GCAGCAAGCCAAACATCACT 59.684 50.000 0.0 0.0 37.23 3.41 R
2034 2518 1.016653 GTTTCGTCAGCTCCTCAGGC 61.017 60.000 0.0 0.0 0.00 4.85 R
3099 3629 1.937899 CTACCCCCGCATTTAGTTTCG 59.062 52.381 0.0 0.0 0.00 3.46 R
3224 3754 0.108233 CCAAACGGGAAATGCATGGG 60.108 55.000 0.0 0.0 40.01 4.00 R
4369 4991 0.103937 TTTTTGGGTTTGCTGGCGAG 59.896 50.000 0.0 0.0 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 3.681835 ACGGGAGTGGACGAGTGC 61.682 66.667 0.00 0.00 44.82 4.40
80 81 4.778415 CGGGAGTGGACGAGTGCG 62.778 72.222 0.00 0.00 44.79 5.34
288 323 6.509656 AGTTTTTCCGTTATTTCCTGTTTCC 58.490 36.000 0.00 0.00 0.00 3.13
327 366 9.114952 TGTTTCCTTTTTCTGTTTTTGTTTCTT 57.885 25.926 0.00 0.00 0.00 2.52
369 445 8.757164 TCCTTTTTCTGTTTCTGTTTCTTTTC 57.243 30.769 0.00 0.00 0.00 2.29
711 804 5.518487 AGTTGTTTGGCGTATTTTCACAAAG 59.482 36.000 0.00 0.00 32.39 2.77
898 993 1.014564 GTGCAGTGGCGAGTAAGTCC 61.015 60.000 0.00 0.00 45.35 3.85
907 1002 1.918609 GCGAGTAAGTCCGCTTTGTAG 59.081 52.381 0.00 0.00 46.96 2.74
909 1004 2.415625 CGAGTAAGTCCGCTTTGTAGCT 60.416 50.000 0.00 0.00 45.51 3.32
914 1009 3.611766 AGTCCGCTTTGTAGCTATGTT 57.388 42.857 0.00 0.00 45.51 2.71
942 1039 2.125512 ACTCCCGAACGCTGCATC 60.126 61.111 0.00 0.00 0.00 3.91
991 1090 3.583882 CTTGTGGGAATGGGCCGGT 62.584 63.158 1.90 0.00 0.00 5.28
1033 1132 2.349297 CGAAAGCTACTCGTTGGTCT 57.651 50.000 9.42 0.00 0.00 3.85
1034 1133 2.251893 CGAAAGCTACTCGTTGGTCTC 58.748 52.381 9.42 0.00 0.00 3.36
1035 1134 2.351447 CGAAAGCTACTCGTTGGTCTCA 60.351 50.000 9.42 0.00 0.00 3.27
1036 1135 3.650139 GAAAGCTACTCGTTGGTCTCAA 58.350 45.455 0.00 0.00 0.00 3.02
1043 1142 4.095185 CTACTCGTTGGTCTCAACTAGGAG 59.905 50.000 12.94 10.59 45.22 3.69
1044 1143 7.382503 CTACTCGTTGGTCTCAACTAGGAGC 62.383 52.000 9.17 0.00 44.91 4.70
1047 1146 2.310779 TGGTCTCAACTAGGAGCACT 57.689 50.000 0.00 0.00 35.46 4.40
1048 1147 2.171840 TGGTCTCAACTAGGAGCACTC 58.828 52.381 0.00 0.00 35.46 3.51
1058 1157 4.154347 GAGCACTCCCCTCCGCTG 62.154 72.222 0.00 0.00 34.12 5.18
1061 1160 3.775654 CACTCCCCTCCGCTGGTC 61.776 72.222 0.00 0.00 0.00 4.02
1071 1170 4.351054 CGCTGGTCCCAGGCCTTT 62.351 66.667 14.93 0.00 43.77 3.11
1072 1171 2.118294 GCTGGTCCCAGGCCTTTT 59.882 61.111 14.93 0.00 43.77 2.27
1073 1172 1.979155 GCTGGTCCCAGGCCTTTTC 60.979 63.158 14.93 0.00 43.77 2.29
1074 1173 1.675641 CTGGTCCCAGGCCTTTTCG 60.676 63.158 0.00 0.00 40.17 3.46
1075 1174 2.361230 GGTCCCAGGCCTTTTCGG 60.361 66.667 0.00 0.00 0.00 4.30
1076 1175 2.754375 GTCCCAGGCCTTTTCGGA 59.246 61.111 0.00 2.49 33.16 4.55
1077 1176 1.074248 GTCCCAGGCCTTTTCGGAA 59.926 57.895 0.00 0.00 33.16 4.30
1078 1177 0.538746 GTCCCAGGCCTTTTCGGAAA 60.539 55.000 0.00 0.00 33.16 3.13
1079 1178 0.186386 TCCCAGGCCTTTTCGGAAAA 59.814 50.000 14.64 14.64 33.16 2.29
1080 1179 0.603065 CCCAGGCCTTTTCGGAAAAG 59.397 55.000 28.16 28.16 45.78 2.27
1092 1191 6.532988 TTTTCGGAAAAGGAAAAGGAGAAA 57.467 33.333 11.68 0.00 38.18 2.52
1093 1192 5.509716 TTCGGAAAAGGAAAAGGAGAAAC 57.490 39.130 0.00 0.00 0.00 2.78
1094 1193 3.887110 TCGGAAAAGGAAAAGGAGAAACC 59.113 43.478 0.00 0.00 39.35 3.27
1095 1194 3.304458 CGGAAAAGGAAAAGGAGAAACCG 60.304 47.826 0.00 0.00 44.74 4.44
1096 1195 3.887110 GGAAAAGGAAAAGGAGAAACCGA 59.113 43.478 0.00 0.00 44.74 4.69
1097 1196 4.023107 GGAAAAGGAAAAGGAGAAACCGAG 60.023 45.833 0.00 0.00 44.74 4.63
1098 1197 2.186532 AGGAAAAGGAGAAACCGAGC 57.813 50.000 0.00 0.00 44.74 5.03
1099 1198 1.166129 GGAAAAGGAGAAACCGAGCC 58.834 55.000 0.00 0.00 44.74 4.70
1100 1199 0.796927 GAAAAGGAGAAACCGAGCCG 59.203 55.000 0.00 0.00 44.74 5.52
1101 1200 0.395312 AAAAGGAGAAACCGAGCCGA 59.605 50.000 0.00 0.00 44.74 5.54
1102 1201 0.395312 AAAGGAGAAACCGAGCCGAA 59.605 50.000 0.00 0.00 44.74 4.30
1103 1202 0.320508 AAGGAGAAACCGAGCCGAAC 60.321 55.000 0.00 0.00 44.74 3.95
1104 1203 1.186267 AGGAGAAACCGAGCCGAACT 61.186 55.000 0.00 0.00 44.74 3.01
1105 1204 1.014564 GGAGAAACCGAGCCGAACTG 61.015 60.000 0.00 0.00 0.00 3.16
1106 1205 1.004918 AGAAACCGAGCCGAACTGG 60.005 57.895 0.00 0.00 42.50 4.00
1125 1224 3.971894 CCGGTGGGCTCTCCTTAT 58.028 61.111 2.65 0.00 36.20 1.73
1126 1225 3.143010 CCGGTGGGCTCTCCTTATA 57.857 57.895 2.65 0.00 36.20 0.98
1127 1226 1.645710 CCGGTGGGCTCTCCTTATAT 58.354 55.000 2.65 0.00 36.20 0.86
1128 1227 2.816411 CCGGTGGGCTCTCCTTATATA 58.184 52.381 2.65 0.00 36.20 0.86
1129 1228 2.496470 CCGGTGGGCTCTCCTTATATAC 59.504 54.545 2.65 0.00 36.20 1.47
1130 1229 3.432378 CGGTGGGCTCTCCTTATATACT 58.568 50.000 2.65 0.00 36.20 2.12
1131 1230 4.569228 CCGGTGGGCTCTCCTTATATACTA 60.569 50.000 2.65 0.00 36.20 1.82
1132 1231 4.398673 CGGTGGGCTCTCCTTATATACTAC 59.601 50.000 2.65 0.00 36.20 2.73
1133 1232 5.581975 GGTGGGCTCTCCTTATATACTACT 58.418 45.833 0.00 0.00 36.20 2.57
1134 1233 5.653330 GGTGGGCTCTCCTTATATACTACTC 59.347 48.000 0.00 0.00 36.20 2.59
1135 1234 5.653330 GTGGGCTCTCCTTATATACTACTCC 59.347 48.000 0.00 0.00 36.20 3.85
1136 1235 5.556339 TGGGCTCTCCTTATATACTACTCCT 59.444 44.000 0.00 0.00 36.20 3.69
1137 1236 6.739042 TGGGCTCTCCTTATATACTACTCCTA 59.261 42.308 0.00 0.00 36.20 2.94
1138 1237 7.409397 TGGGCTCTCCTTATATACTACTCCTAT 59.591 40.741 0.00 0.00 36.20 2.57
1139 1238 8.947305 GGGCTCTCCTTATATACTACTCCTATA 58.053 40.741 0.00 0.00 0.00 1.31
1140 1239 9.783081 GGCTCTCCTTATATACTACTCCTATAC 57.217 40.741 0.00 0.00 0.00 1.47
1169 1268 7.275999 GTGTTCTTCTTCCTTTAGATAAGACCG 59.724 40.741 0.00 0.00 30.54 4.79
1401 1510 1.482593 CTTGTTCAGGGGTCTCGCTAT 59.517 52.381 0.00 0.00 34.60 2.97
1495 1604 2.095263 CGCAACCTCTTGTGTTTATGGG 60.095 50.000 0.00 0.00 33.81 4.00
1517 1626 4.578928 GGGAAATTTGGATGTACGTATGCT 59.421 41.667 0.00 0.00 0.00 3.79
2279 2774 6.260271 GGCTAGAACATCACACCCTAATTAAC 59.740 42.308 0.00 0.00 0.00 2.01
2324 2827 0.450583 CATGCGATTTGCTGCTGACT 59.549 50.000 0.00 0.00 46.63 3.41
2596 3117 6.009589 TGGAATCTCCATGCTTTTTCACTAA 58.990 36.000 0.00 0.00 42.67 2.24
2877 3407 8.746530 CACACACCCCTATACGAATATAGTATT 58.253 37.037 8.49 0.00 39.06 1.89
2939 3469 3.270696 TGGGGATATCAAAATGGGTGTCA 59.729 43.478 4.83 0.00 0.00 3.58
2951 3481 1.192428 GGGTGTCATTCTACTCCCGT 58.808 55.000 0.00 0.00 41.85 5.28
2952 3482 1.134788 GGGTGTCATTCTACTCCCGTG 60.135 57.143 0.00 0.00 41.85 4.94
2953 3483 1.549170 GGTGTCATTCTACTCCCGTGT 59.451 52.381 0.00 0.00 0.00 4.49
2979 3509 2.438434 GTGAGGAATGGGTGCCCG 60.438 66.667 2.44 0.00 39.42 6.13
2989 3519 1.153229 GGGTGCCCGTGGTATTCTC 60.153 63.158 0.00 0.00 0.00 2.87
2994 3524 0.461135 GCCCGTGGTATTCTCGGTAA 59.539 55.000 0.00 0.00 42.30 2.85
3099 3629 1.097547 CACGGGCATCCATTCCTCAC 61.098 60.000 0.00 0.00 0.00 3.51
3108 3638 4.394920 GCATCCATTCCTCACGAAACTAAA 59.605 41.667 0.00 0.00 33.08 1.85
3112 3642 4.334443 CATTCCTCACGAAACTAAATGCG 58.666 43.478 0.00 0.00 33.08 4.73
3119 3649 1.937899 CGAAACTAAATGCGGGGGTAG 59.062 52.381 0.00 0.00 0.00 3.18
3143 3673 2.584492 GGCAACCATGTTTGATAGCC 57.416 50.000 7.23 0.00 0.00 3.93
3151 3681 3.070015 CCATGTTTGATAGCCCCAAATCC 59.930 47.826 0.00 0.00 36.14 3.01
3214 3744 3.290948 TCATATAGGGGTTTGTGGCAC 57.709 47.619 11.55 11.55 0.00 5.01
3224 3754 0.250467 TTTGTGGCACCTGAGAGCTC 60.250 55.000 16.26 5.27 0.00 4.09
3225 3755 2.116983 TTGTGGCACCTGAGAGCTCC 62.117 60.000 16.26 2.40 0.00 4.70
3245 3779 1.001860 CCATGCATTTCCCGTTTGGTT 59.998 47.619 0.00 0.00 34.77 3.67
3278 3812 0.249120 TGGTTCAGGTGTATGGCGAG 59.751 55.000 0.00 0.00 0.00 5.03
3330 3864 0.524414 CATGTGACATGCAGGGTGTG 59.476 55.000 13.15 0.00 0.00 3.82
3331 3865 0.111061 ATGTGACATGCAGGGTGTGT 59.889 50.000 2.31 0.00 0.00 3.72
3333 3867 1.141858 TGTGACATGCAGGGTGTGTAA 59.858 47.619 2.31 0.00 0.00 2.41
3334 3868 1.806542 GTGACATGCAGGGTGTGTAAG 59.193 52.381 2.31 0.00 0.00 2.34
3456 3990 2.486472 AGGAGCTCCTGATTTGTGTG 57.514 50.000 34.74 0.00 46.55 3.82
3492 4026 4.625311 GGGACTTGCGGTATTTCAATTTTG 59.375 41.667 0.00 0.00 0.00 2.44
3514 4048 1.215423 ACTTGGTGGCCATATTCTCCC 59.785 52.381 9.72 3.53 31.53 4.30
3547 4081 1.747924 TGCGACCATGAAGAGAGAGAG 59.252 52.381 0.00 0.00 0.00 3.20
3549 4083 2.033299 GCGACCATGAAGAGAGAGAGAG 59.967 54.545 0.00 0.00 0.00 3.20
3550 4084 3.540617 CGACCATGAAGAGAGAGAGAGA 58.459 50.000 0.00 0.00 0.00 3.10
3551 4085 3.561310 CGACCATGAAGAGAGAGAGAGAG 59.439 52.174 0.00 0.00 0.00 3.20
3552 4086 4.683129 CGACCATGAAGAGAGAGAGAGAGA 60.683 50.000 0.00 0.00 0.00 3.10
3553 4087 5.191727 ACCATGAAGAGAGAGAGAGAGAA 57.808 43.478 0.00 0.00 0.00 2.87
3554 4088 4.949856 ACCATGAAGAGAGAGAGAGAGAAC 59.050 45.833 0.00 0.00 0.00 3.01
3556 4090 5.595542 CCATGAAGAGAGAGAGAGAGAACAT 59.404 44.000 0.00 0.00 0.00 2.71
3557 4091 6.460537 CCATGAAGAGAGAGAGAGAGAACATG 60.461 46.154 0.00 0.00 0.00 3.21
3558 4092 4.949238 TGAAGAGAGAGAGAGAGAACATGG 59.051 45.833 0.00 0.00 0.00 3.66
3559 4093 3.290710 AGAGAGAGAGAGAGAACATGGC 58.709 50.000 0.00 0.00 0.00 4.40
3601 4135 9.301897 GTAGGGATTATAGCCATTCAAGAAAAT 57.698 33.333 0.00 0.00 0.00 1.82
3614 4148 7.396055 CCATTCAAGAAAATAAGTTGGTAGGGA 59.604 37.037 0.00 0.00 0.00 4.20
3626 4160 3.213206 TGGTAGGGATTAATGCTGCTG 57.787 47.619 6.93 0.00 0.00 4.41
3641 4175 3.318839 TGCTGCTGCATCTTTGTAAGTTT 59.681 39.130 14.93 0.00 45.31 2.66
3660 4194 2.228138 TTAACGCTTGACGGTCTTGT 57.772 45.000 9.88 0.00 36.55 3.16
3719 4253 7.971722 TCATCTTGTCAAATGCAAACATCTATG 59.028 33.333 0.00 0.00 34.62 2.23
3721 4255 6.433716 TCTTGTCAAATGCAAACATCTATGGA 59.566 34.615 0.00 0.00 34.62 3.41
3722 4256 6.198650 TGTCAAATGCAAACATCTATGGAG 57.801 37.500 0.00 0.00 34.62 3.86
3794 4395 6.415280 CGACAAGTGAAAGAGGATTATAGTCG 59.585 42.308 0.00 0.00 37.01 4.18
3859 4460 3.606422 CATTTGCTCAAAACAAAACGCC 58.394 40.909 0.00 0.00 40.19 5.68
3860 4461 2.370281 TTGCTCAAAACAAAACGCCA 57.630 40.000 0.00 0.00 0.00 5.69
3891 4492 4.935205 TCATTTGTCCATAAGAGTCAACCG 59.065 41.667 0.00 0.00 0.00 4.44
3894 4495 3.162666 TGTCCATAAGAGTCAACCGTCT 58.837 45.455 0.00 0.00 0.00 4.18
3925 4546 8.652290 AGTCAGGTTAGGGTATTGAAATCTATC 58.348 37.037 0.00 0.00 0.00 2.08
3932 4553 5.368523 AGGGTATTGAAATCTATCAACGGGA 59.631 40.000 0.00 0.00 41.78 5.14
3933 4554 6.059484 GGGTATTGAAATCTATCAACGGGAA 58.941 40.000 0.00 0.00 41.78 3.97
3944 4565 1.674322 AACGGGAACTCGGCCATTG 60.674 57.895 2.24 0.00 0.00 2.82
3953 4574 2.394632 ACTCGGCCATTGTCATACCTA 58.605 47.619 2.24 0.00 0.00 3.08
3964 4585 7.917505 GCCATTGTCATACCTATTTCTTTTGAG 59.082 37.037 0.00 0.00 0.00 3.02
3997 4618 6.550938 ATCCTTCCGCAGAATATATGATGA 57.449 37.500 2.39 0.00 0.00 2.92
4056 4677 7.781324 AAAATCTTTCTGGCTAAATCCTTCA 57.219 32.000 0.00 0.00 0.00 3.02
4057 4678 7.401955 AAATCTTTCTGGCTAAATCCTTCAG 57.598 36.000 0.00 0.00 0.00 3.02
4058 4679 5.762179 TCTTTCTGGCTAAATCCTTCAGA 57.238 39.130 0.00 0.00 33.30 3.27
4059 4680 6.126863 TCTTTCTGGCTAAATCCTTCAGAA 57.873 37.500 0.00 0.00 41.07 3.02
4060 4681 6.542821 TCTTTCTGGCTAAATCCTTCAGAAA 58.457 36.000 13.71 13.71 45.97 2.52
4077 4698 3.815401 CAGAAACAATTCGGTGAGAAGGT 59.185 43.478 0.00 0.00 42.92 3.50
4111 4732 6.358118 TGAAGACACAAATGTACAGTTCAC 57.642 37.500 5.41 0.00 39.95 3.18
4113 4734 7.269316 TGAAGACACAAATGTACAGTTCACTA 58.731 34.615 5.41 0.00 39.95 2.74
4159 4781 6.280643 GGCTGAAACCTTCAAAAACATACTT 58.719 36.000 0.00 0.00 39.58 2.24
4164 4786 5.852282 ACCTTCAAAAACATACTTGCTGT 57.148 34.783 0.00 0.00 0.00 4.40
4175 4797 4.509230 ACATACTTGCTGTGCTATTCATCG 59.491 41.667 0.00 0.00 0.00 3.84
4179 4801 3.457610 TGCTGTGCTATTCATCGATCA 57.542 42.857 0.00 0.00 0.00 2.92
4279 4901 5.202765 ACCAACATCATGGAAAGCATGATA 58.797 37.500 0.00 0.00 45.02 2.15
4298 4920 8.133627 GCATGATAATTGCTATTATAAGCCCAG 58.866 37.037 12.48 2.51 42.05 4.45
4300 4922 7.174413 TGATAATTGCTATTATAAGCCCAGCA 58.826 34.615 12.48 8.82 42.05 4.41
4347 4969 3.907894 TTTTCCACGCTCCACAAATAC 57.092 42.857 0.00 0.00 0.00 1.89
4348 4970 2.851263 TTCCACGCTCCACAAATACT 57.149 45.000 0.00 0.00 0.00 2.12
4349 4971 2.851263 TCCACGCTCCACAAATACTT 57.149 45.000 0.00 0.00 0.00 2.24
4350 4972 3.965379 TCCACGCTCCACAAATACTTA 57.035 42.857 0.00 0.00 0.00 2.24
4351 4973 4.481368 TCCACGCTCCACAAATACTTAT 57.519 40.909 0.00 0.00 0.00 1.73
4352 4974 4.839121 TCCACGCTCCACAAATACTTATT 58.161 39.130 0.00 0.00 0.00 1.40
4353 4975 4.634004 TCCACGCTCCACAAATACTTATTG 59.366 41.667 0.00 0.00 0.00 1.90
4354 4976 4.394920 CCACGCTCCACAAATACTTATTGT 59.605 41.667 0.00 0.00 41.50 2.71
4355 4977 5.583061 CCACGCTCCACAAATACTTATTGTA 59.417 40.000 0.00 0.00 38.90 2.41
4356 4978 6.260050 CCACGCTCCACAAATACTTATTGTAT 59.740 38.462 0.00 0.00 43.19 2.29
4357 4979 7.345192 CACGCTCCACAAATACTTATTGTATC 58.655 38.462 0.00 0.00 40.69 2.24
4358 4980 7.224753 CACGCTCCACAAATACTTATTGTATCT 59.775 37.037 0.00 0.00 40.69 1.98
4359 4981 7.438459 ACGCTCCACAAATACTTATTGTATCTC 59.562 37.037 0.00 0.00 40.69 2.75
4360 4982 7.653713 CGCTCCACAAATACTTATTGTATCTCT 59.346 37.037 0.00 0.00 40.69 3.10
4361 4983 8.983724 GCTCCACAAATACTTATTGTATCTCTC 58.016 37.037 0.00 0.00 40.69 3.20
4362 4984 9.482627 CTCCACAAATACTTATTGTATCTCTCC 57.517 37.037 0.00 0.00 40.69 3.71
4363 4985 8.988060 TCCACAAATACTTATTGTATCTCTCCA 58.012 33.333 0.00 0.00 40.69 3.86
4364 4986 9.613428 CCACAAATACTTATTGTATCTCTCCAA 57.387 33.333 0.00 0.00 40.69 3.53
4366 4988 9.331282 ACAAATACTTATTGTATCTCTCCAAGC 57.669 33.333 0.00 0.00 40.69 4.01
4367 4989 9.553064 CAAATACTTATTGTATCTCTCCAAGCT 57.447 33.333 0.00 0.00 40.69 3.74
4368 4990 9.771534 AAATACTTATTGTATCTCTCCAAGCTC 57.228 33.333 0.00 0.00 40.69 4.09
4369 4991 6.168270 ACTTATTGTATCTCTCCAAGCTCC 57.832 41.667 0.00 0.00 0.00 4.70
4370 4992 5.902431 ACTTATTGTATCTCTCCAAGCTCCT 59.098 40.000 0.00 0.00 0.00 3.69
4371 4993 4.953940 ATTGTATCTCTCCAAGCTCCTC 57.046 45.455 0.00 0.00 0.00 3.71
4372 4994 2.302260 TGTATCTCTCCAAGCTCCTCG 58.698 52.381 0.00 0.00 0.00 4.63
4373 4995 1.000717 GTATCTCTCCAAGCTCCTCGC 60.001 57.143 0.00 0.00 39.57 5.03
4374 4996 1.398958 ATCTCTCCAAGCTCCTCGCC 61.399 60.000 0.00 0.00 40.39 5.54
4375 4997 2.283894 TCTCCAAGCTCCTCGCCA 60.284 61.111 0.00 0.00 40.39 5.69
4376 4998 2.186384 CTCCAAGCTCCTCGCCAG 59.814 66.667 0.00 0.00 40.39 4.85
4377 4999 4.087892 TCCAAGCTCCTCGCCAGC 62.088 66.667 0.00 0.00 40.39 4.85
4378 5000 4.399395 CCAAGCTCCTCGCCAGCA 62.399 66.667 0.00 0.00 39.56 4.41
4379 5001 2.359107 CAAGCTCCTCGCCAGCAA 60.359 61.111 0.00 0.00 39.56 3.91
4380 5002 1.968017 CAAGCTCCTCGCCAGCAAA 60.968 57.895 0.00 0.00 39.56 3.68
4381 5003 1.968540 AAGCTCCTCGCCAGCAAAC 60.969 57.895 0.00 0.00 39.56 2.93
4382 5004 3.435186 GCTCCTCGCCAGCAAACC 61.435 66.667 0.00 0.00 36.82 3.27
4383 5005 2.747855 CTCCTCGCCAGCAAACCC 60.748 66.667 0.00 0.00 0.00 4.11
4384 5006 3.551496 CTCCTCGCCAGCAAACCCA 62.551 63.158 0.00 0.00 0.00 4.51
4385 5007 2.597217 CCTCGCCAGCAAACCCAA 60.597 61.111 0.00 0.00 0.00 4.12
4386 5008 2.199652 CCTCGCCAGCAAACCCAAA 61.200 57.895 0.00 0.00 0.00 3.28
4387 5009 1.739049 CTCGCCAGCAAACCCAAAA 59.261 52.632 0.00 0.00 0.00 2.44
4388 5010 0.103937 CTCGCCAGCAAACCCAAAAA 59.896 50.000 0.00 0.00 0.00 1.94
4415 5037 5.674933 AGGCATAGCTTATACGAAAAAGC 57.325 39.130 10.84 10.84 46.76 3.51
4421 5043 4.600012 GCTTATACGAAAAAGCAGCAGA 57.400 40.909 12.99 0.00 45.89 4.26
4422 5044 4.335272 GCTTATACGAAAAAGCAGCAGAC 58.665 43.478 12.99 0.00 45.89 3.51
4423 5045 4.142902 GCTTATACGAAAAAGCAGCAGACA 60.143 41.667 12.99 0.00 45.89 3.41
4424 5046 5.447818 GCTTATACGAAAAAGCAGCAGACAT 60.448 40.000 12.99 0.00 45.89 3.06
4425 5047 6.238103 GCTTATACGAAAAAGCAGCAGACATA 60.238 38.462 12.99 0.00 45.89 2.29
4426 5048 7.603963 TTATACGAAAAAGCAGCAGACATAA 57.396 32.000 0.00 0.00 0.00 1.90
4427 5049 6.683974 ATACGAAAAAGCAGCAGACATAAT 57.316 33.333 0.00 0.00 0.00 1.28
4428 5050 7.786178 ATACGAAAAAGCAGCAGACATAATA 57.214 32.000 0.00 0.00 0.00 0.98
4429 5051 6.494893 ACGAAAAAGCAGCAGACATAATAA 57.505 33.333 0.00 0.00 0.00 1.40
4430 5052 6.908825 ACGAAAAAGCAGCAGACATAATAAA 58.091 32.000 0.00 0.00 0.00 1.40
4431 5053 7.538575 ACGAAAAAGCAGCAGACATAATAAAT 58.461 30.769 0.00 0.00 0.00 1.40
4432 5054 7.698130 ACGAAAAAGCAGCAGACATAATAAATC 59.302 33.333 0.00 0.00 0.00 2.17
4433 5055 7.912250 CGAAAAAGCAGCAGACATAATAAATCT 59.088 33.333 0.00 0.00 0.00 2.40
4434 5056 9.230932 GAAAAAGCAGCAGACATAATAAATCTC 57.769 33.333 0.00 0.00 0.00 2.75
4435 5057 7.870509 AAAGCAGCAGACATAATAAATCTCA 57.129 32.000 0.00 0.00 0.00 3.27
4436 5058 7.870509 AAGCAGCAGACATAATAAATCTCAA 57.129 32.000 0.00 0.00 0.00 3.02
4437 5059 7.493743 AGCAGCAGACATAATAAATCTCAAG 57.506 36.000 0.00 0.00 0.00 3.02
4438 5060 7.278135 AGCAGCAGACATAATAAATCTCAAGA 58.722 34.615 0.00 0.00 0.00 3.02
4439 5061 7.772292 AGCAGCAGACATAATAAATCTCAAGAA 59.228 33.333 0.00 0.00 0.00 2.52
4440 5062 8.400947 GCAGCAGACATAATAAATCTCAAGAAA 58.599 33.333 0.00 0.00 0.00 2.52
4458 5080 9.787532 CTCAAGAAAACACAAAGATTAAACTCA 57.212 29.630 0.00 0.00 0.00 3.41
4480 5102 8.619546 ACTCATATATCTGAAGCAAAAGAAAGC 58.380 33.333 0.00 0.00 0.00 3.51
4481 5103 8.743085 TCATATATCTGAAGCAAAAGAAAGCT 57.257 30.769 0.00 0.00 44.31 3.74
4482 5104 8.834465 TCATATATCTGAAGCAAAAGAAAGCTC 58.166 33.333 0.00 0.00 40.90 4.09
4483 5105 8.838365 CATATATCTGAAGCAAAAGAAAGCTCT 58.162 33.333 0.00 0.00 40.90 4.09
4484 5106 5.625921 ATCTGAAGCAAAAGAAAGCTCTC 57.374 39.130 0.00 0.00 40.90 3.20
4485 5107 4.454678 TCTGAAGCAAAAGAAAGCTCTCA 58.545 39.130 0.00 0.00 40.90 3.27
4486 5108 4.883585 TCTGAAGCAAAAGAAAGCTCTCAA 59.116 37.500 0.00 0.00 40.90 3.02
4487 5109 5.008415 TCTGAAGCAAAAGAAAGCTCTCAAG 59.992 40.000 0.00 0.00 40.90 3.02
4488 5110 4.641989 TGAAGCAAAAGAAAGCTCTCAAGT 59.358 37.500 0.00 0.00 40.90 3.16
4489 5111 5.126061 TGAAGCAAAAGAAAGCTCTCAAGTT 59.874 36.000 0.00 0.00 40.90 2.66
4490 5112 4.929781 AGCAAAAGAAAGCTCTCAAGTTG 58.070 39.130 0.00 0.00 36.00 3.16
4491 5113 4.047142 GCAAAAGAAAGCTCTCAAGTTGG 58.953 43.478 2.34 0.00 0.00 3.77
4492 5114 4.202050 GCAAAAGAAAGCTCTCAAGTTGGA 60.202 41.667 2.34 0.00 0.00 3.53
4493 5115 5.277047 CAAAAGAAAGCTCTCAAGTTGGAC 58.723 41.667 2.34 0.00 0.00 4.02
4494 5116 3.133141 AGAAAGCTCTCAAGTTGGACC 57.867 47.619 2.34 0.00 0.00 4.46
4495 5117 2.439507 AGAAAGCTCTCAAGTTGGACCA 59.560 45.455 2.34 0.00 0.00 4.02
4496 5118 3.073650 AGAAAGCTCTCAAGTTGGACCAT 59.926 43.478 2.34 0.00 0.00 3.55
4497 5119 3.515602 AAGCTCTCAAGTTGGACCATT 57.484 42.857 2.34 0.00 0.00 3.16
4498 5120 3.515602 AGCTCTCAAGTTGGACCATTT 57.484 42.857 2.34 0.00 0.00 2.32
4499 5121 4.640771 AGCTCTCAAGTTGGACCATTTA 57.359 40.909 2.34 0.00 0.00 1.40
4500 5122 4.985538 AGCTCTCAAGTTGGACCATTTAA 58.014 39.130 2.34 0.00 0.00 1.52
4501 5123 4.762251 AGCTCTCAAGTTGGACCATTTAAC 59.238 41.667 2.34 0.00 0.00 2.01
4502 5124 4.082733 GCTCTCAAGTTGGACCATTTAACC 60.083 45.833 2.34 0.00 0.00 2.85
4503 5125 5.316987 CTCTCAAGTTGGACCATTTAACCT 58.683 41.667 2.34 0.00 0.00 3.50
4504 5126 5.313712 TCTCAAGTTGGACCATTTAACCTC 58.686 41.667 2.34 0.00 0.00 3.85
4505 5127 4.069304 TCAAGTTGGACCATTTAACCTCG 58.931 43.478 2.34 0.00 0.00 4.63
4506 5128 4.069304 CAAGTTGGACCATTTAACCTCGA 58.931 43.478 0.00 0.00 0.00 4.04
4507 5129 3.939066 AGTTGGACCATTTAACCTCGAG 58.061 45.455 5.13 5.13 0.00 4.04
4508 5130 3.326880 AGTTGGACCATTTAACCTCGAGT 59.673 43.478 12.31 0.00 0.00 4.18
4509 5131 4.529377 AGTTGGACCATTTAACCTCGAGTA 59.471 41.667 12.31 0.00 0.00 2.59
4510 5132 4.730949 TGGACCATTTAACCTCGAGTAG 57.269 45.455 12.31 0.00 0.00 2.57
4511 5133 4.346730 TGGACCATTTAACCTCGAGTAGA 58.653 43.478 12.31 0.00 0.00 2.59
4512 5134 4.960469 TGGACCATTTAACCTCGAGTAGAT 59.040 41.667 12.31 0.00 0.00 1.98
4513 5135 5.424252 TGGACCATTTAACCTCGAGTAGATT 59.576 40.000 12.31 2.89 0.00 2.40
4514 5136 5.753921 GGACCATTTAACCTCGAGTAGATTG 59.246 44.000 12.31 1.94 0.00 2.67
4515 5137 6.295719 ACCATTTAACCTCGAGTAGATTGT 57.704 37.500 12.31 0.00 0.00 2.71
4516 5138 6.708285 ACCATTTAACCTCGAGTAGATTGTT 58.292 36.000 12.31 9.47 0.00 2.83
4517 5139 7.844009 ACCATTTAACCTCGAGTAGATTGTTA 58.156 34.615 12.31 8.48 0.00 2.41
4518 5140 7.763071 ACCATTTAACCTCGAGTAGATTGTTAC 59.237 37.037 12.31 0.00 30.59 2.50
4519 5141 7.762615 CCATTTAACCTCGAGTAGATTGTTACA 59.237 37.037 12.31 5.17 30.59 2.41
4520 5142 9.146984 CATTTAACCTCGAGTAGATTGTTACAA 57.853 33.333 12.31 0.00 30.59 2.41
4521 5143 8.752766 TTTAACCTCGAGTAGATTGTTACAAG 57.247 34.615 12.31 0.00 30.59 3.16
4522 5144 6.585695 AACCTCGAGTAGATTGTTACAAGA 57.414 37.500 12.31 0.00 0.00 3.02
4523 5145 5.952033 ACCTCGAGTAGATTGTTACAAGAC 58.048 41.667 12.31 2.08 0.00 3.01
4524 5146 5.029014 CCTCGAGTAGATTGTTACAAGACG 58.971 45.833 12.31 3.60 0.00 4.18
4525 5147 4.409570 TCGAGTAGATTGTTACAAGACGC 58.590 43.478 3.63 3.13 0.00 5.19
4526 5148 4.083164 TCGAGTAGATTGTTACAAGACGCA 60.083 41.667 3.63 0.00 0.00 5.24
4527 5149 4.030306 CGAGTAGATTGTTACAAGACGCAC 59.970 45.833 3.63 4.85 0.00 5.34
4528 5150 4.878439 AGTAGATTGTTACAAGACGCACA 58.122 39.130 3.63 0.00 0.00 4.57
4529 5151 4.684703 AGTAGATTGTTACAAGACGCACAC 59.315 41.667 3.63 0.00 0.00 3.82
4530 5152 3.462982 AGATTGTTACAAGACGCACACA 58.537 40.909 3.63 0.00 0.00 3.72
4531 5153 3.874543 AGATTGTTACAAGACGCACACAA 59.125 39.130 3.63 0.00 0.00 3.33
4532 5154 3.392769 TTGTTACAAGACGCACACAAC 57.607 42.857 0.00 0.00 0.00 3.32
4533 5155 2.347731 TGTTACAAGACGCACACAACA 58.652 42.857 0.00 0.00 0.00 3.33
4534 5156 2.350192 TGTTACAAGACGCACACAACAG 59.650 45.455 0.00 0.00 0.00 3.16
4535 5157 1.577468 TACAAGACGCACACAACAGG 58.423 50.000 0.00 0.00 0.00 4.00
4536 5158 0.107897 ACAAGACGCACACAACAGGA 60.108 50.000 0.00 0.00 0.00 3.86
4537 5159 0.304705 CAAGACGCACACAACAGGAC 59.695 55.000 0.00 0.00 0.00 3.85
4538 5160 1.151777 AAGACGCACACAACAGGACG 61.152 55.000 0.00 0.00 0.00 4.79
4539 5161 1.881252 GACGCACACAACAGGACGT 60.881 57.895 0.00 0.00 36.30 4.34
4540 5162 2.089433 GACGCACACAACAGGACGTG 62.089 60.000 0.00 0.00 39.10 4.49
4541 5163 2.327940 GCACACAACAGGACGTGC 59.672 61.111 0.00 0.00 46.85 5.34
4542 5164 3.806651 CACACAACAGGACGTGCA 58.193 55.556 10.52 0.00 36.57 4.57
4543 5165 1.643292 CACACAACAGGACGTGCAG 59.357 57.895 10.52 3.29 36.57 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.739667 GCTGAACGCCCCAGTTTTT 59.260 52.632 0.00 0.00 34.00 1.94
23 24 3.443588 GCTGAACGCCCCAGTTTT 58.556 55.556 0.00 0.00 34.00 2.43
59 60 2.258591 CTCGTCCACTCCCGTGTG 59.741 66.667 0.00 0.00 39.55 3.82
60 61 2.203451 ACTCGTCCACTCCCGTGT 60.203 61.111 0.00 0.00 39.55 4.49
61 62 2.258591 CACTCGTCCACTCCCGTG 59.741 66.667 0.00 0.00 40.89 4.94
62 63 3.681835 GCACTCGTCCACTCCCGT 61.682 66.667 0.00 0.00 0.00 5.28
63 64 4.778415 CGCACTCGTCCACTCCCG 62.778 72.222 0.00 0.00 0.00 5.14
116 117 4.247380 GATCTGCCAGCGGAGGGG 62.247 72.222 7.33 0.00 34.49 4.79
117 118 4.247380 GGATCTGCCAGCGGAGGG 62.247 72.222 7.33 0.00 34.49 4.30
118 119 1.190833 ATAGGATCTGCCAGCGGAGG 61.191 60.000 7.33 0.00 40.02 4.30
119 120 1.550327 TATAGGATCTGCCAGCGGAG 58.450 55.000 7.33 0.00 40.02 4.63
120 121 1.827344 CATATAGGATCTGCCAGCGGA 59.173 52.381 3.16 3.16 40.02 5.54
121 122 1.827344 TCATATAGGATCTGCCAGCGG 59.173 52.381 0.00 0.00 40.02 5.52
122 123 2.733542 CGTCATATAGGATCTGCCAGCG 60.734 54.545 0.00 0.00 40.02 5.18
123 124 2.886081 CGTCATATAGGATCTGCCAGC 58.114 52.381 0.00 0.00 40.02 4.85
207 216 2.676822 TCTCGCTCGAAGTGGGCT 60.677 61.111 0.00 0.00 33.93 5.19
907 1002 4.946766 CGAACCGCGAAACATAGC 57.053 55.556 8.23 0.00 44.57 2.97
991 1090 3.122323 GGATTCGCGCCAAACGGA 61.122 61.111 0.00 0.00 43.93 4.69
1029 1128 1.478916 GGAGTGCTCCTAGTTGAGACC 59.521 57.143 10.80 0.00 46.16 3.85
1030 1129 2.951457 GGAGTGCTCCTAGTTGAGAC 57.049 55.000 10.80 0.00 46.16 3.36
1031 1130 3.978424 AGGGGAGTGCTCCTAGTTGAGA 61.978 54.545 16.80 0.00 45.64 3.27
1032 1131 1.621072 AGGGGAGTGCTCCTAGTTGAG 60.621 57.143 16.80 0.00 45.64 3.02
1033 1132 0.413832 AGGGGAGTGCTCCTAGTTGA 59.586 55.000 16.80 0.00 45.64 3.18
1034 1133 2.998493 AGGGGAGTGCTCCTAGTTG 58.002 57.895 16.80 0.00 45.64 3.16
1041 1140 4.154347 CAGCGGAGGGGAGTGCTC 62.154 72.222 0.00 0.00 34.99 4.26
1044 1143 3.775654 GACCAGCGGAGGGGAGTG 61.776 72.222 1.50 0.00 0.00 3.51
1054 1153 3.868200 AAAAGGCCTGGGACCAGCG 62.868 63.158 5.69 7.53 42.35 5.18
1055 1154 1.979155 GAAAAGGCCTGGGACCAGC 60.979 63.158 5.69 8.30 42.35 4.85
1056 1155 1.675641 CGAAAAGGCCTGGGACCAG 60.676 63.158 5.69 11.44 43.26 4.00
1057 1156 2.434331 CGAAAAGGCCTGGGACCA 59.566 61.111 5.69 0.00 0.00 4.02
1058 1157 2.361230 CCGAAAAGGCCTGGGACC 60.361 66.667 5.69 0.00 0.00 4.46
1059 1158 0.538746 TTTCCGAAAAGGCCTGGGAC 60.539 55.000 5.69 0.00 40.77 4.46
1060 1159 0.186386 TTTTCCGAAAAGGCCTGGGA 59.814 50.000 5.69 8.67 40.77 4.37
1061 1160 0.603065 CTTTTCCGAAAAGGCCTGGG 59.397 55.000 21.37 5.99 43.19 4.45
1069 1168 6.334989 GTTTCTCCTTTTCCTTTTCCGAAAA 58.665 36.000 6.16 6.16 36.98 2.29
1070 1169 5.163488 GGTTTCTCCTTTTCCTTTTCCGAAA 60.163 40.000 0.00 0.00 0.00 3.46
1071 1170 4.340097 GGTTTCTCCTTTTCCTTTTCCGAA 59.660 41.667 0.00 0.00 0.00 4.30
1072 1171 3.887110 GGTTTCTCCTTTTCCTTTTCCGA 59.113 43.478 0.00 0.00 0.00 4.55
1073 1172 3.304458 CGGTTTCTCCTTTTCCTTTTCCG 60.304 47.826 0.00 0.00 0.00 4.30
1074 1173 3.887110 TCGGTTTCTCCTTTTCCTTTTCC 59.113 43.478 0.00 0.00 0.00 3.13
1075 1174 4.556898 GCTCGGTTTCTCCTTTTCCTTTTC 60.557 45.833 0.00 0.00 0.00 2.29
1076 1175 3.318275 GCTCGGTTTCTCCTTTTCCTTTT 59.682 43.478 0.00 0.00 0.00 2.27
1077 1176 2.885266 GCTCGGTTTCTCCTTTTCCTTT 59.115 45.455 0.00 0.00 0.00 3.11
1078 1177 2.505405 GCTCGGTTTCTCCTTTTCCTT 58.495 47.619 0.00 0.00 0.00 3.36
1079 1178 1.271434 GGCTCGGTTTCTCCTTTTCCT 60.271 52.381 0.00 0.00 0.00 3.36
1080 1179 1.166129 GGCTCGGTTTCTCCTTTTCC 58.834 55.000 0.00 0.00 0.00 3.13
1081 1180 0.796927 CGGCTCGGTTTCTCCTTTTC 59.203 55.000 0.00 0.00 0.00 2.29
1082 1181 0.395312 TCGGCTCGGTTTCTCCTTTT 59.605 50.000 0.00 0.00 0.00 2.27
1083 1182 0.395312 TTCGGCTCGGTTTCTCCTTT 59.605 50.000 0.00 0.00 0.00 3.11
1084 1183 0.320508 GTTCGGCTCGGTTTCTCCTT 60.321 55.000 0.00 0.00 0.00 3.36
1085 1184 1.186267 AGTTCGGCTCGGTTTCTCCT 61.186 55.000 0.00 0.00 0.00 3.69
1086 1185 1.014564 CAGTTCGGCTCGGTTTCTCC 61.015 60.000 0.00 0.00 0.00 3.71
1087 1186 1.014564 CCAGTTCGGCTCGGTTTCTC 61.015 60.000 0.00 0.00 0.00 2.87
1088 1187 1.004918 CCAGTTCGGCTCGGTTTCT 60.005 57.895 0.00 0.00 0.00 2.52
1089 1188 2.033194 CCCAGTTCGGCTCGGTTTC 61.033 63.158 0.00 0.00 0.00 2.78
1090 1189 2.032071 CCCAGTTCGGCTCGGTTT 59.968 61.111 0.00 0.00 0.00 3.27
1091 1190 4.699522 GCCCAGTTCGGCTCGGTT 62.700 66.667 0.00 0.00 46.10 4.44
1108 1207 1.645710 ATATAAGGAGAGCCCACCGG 58.354 55.000 0.00 0.00 37.41 5.28
1109 1208 3.432378 AGTATATAAGGAGAGCCCACCG 58.568 50.000 0.00 0.00 37.41 4.94
1110 1209 5.581975 AGTAGTATATAAGGAGAGCCCACC 58.418 45.833 0.00 0.00 37.41 4.61
1111 1210 5.653330 GGAGTAGTATATAAGGAGAGCCCAC 59.347 48.000 0.00 0.00 37.41 4.61
1112 1211 5.556339 AGGAGTAGTATATAAGGAGAGCCCA 59.444 44.000 0.00 0.00 37.41 5.36
1113 1212 6.082228 AGGAGTAGTATATAAGGAGAGCCC 57.918 45.833 0.00 0.00 33.31 5.19
1114 1213 9.783081 GTATAGGAGTAGTATATAAGGAGAGCC 57.217 40.741 0.00 0.00 0.00 4.70
1126 1225 9.924010 AGAAGAACACTTGTATAGGAGTAGTAT 57.076 33.333 0.00 0.00 0.00 2.12
1127 1226 9.750783 AAGAAGAACACTTGTATAGGAGTAGTA 57.249 33.333 0.00 0.00 0.00 1.82
1128 1227 8.653036 AAGAAGAACACTTGTATAGGAGTAGT 57.347 34.615 0.00 0.00 0.00 2.73
1129 1228 8.192110 GGAAGAAGAACACTTGTATAGGAGTAG 58.808 40.741 0.00 0.00 0.00 2.57
1130 1229 7.894364 AGGAAGAAGAACACTTGTATAGGAGTA 59.106 37.037 0.00 0.00 0.00 2.59
1131 1230 6.726764 AGGAAGAAGAACACTTGTATAGGAGT 59.273 38.462 0.00 0.00 0.00 3.85
1132 1231 7.176589 AGGAAGAAGAACACTTGTATAGGAG 57.823 40.000 0.00 0.00 0.00 3.69
1133 1232 7.554959 AAGGAAGAAGAACACTTGTATAGGA 57.445 36.000 0.00 0.00 0.00 2.94
1134 1233 9.372369 CTAAAGGAAGAAGAACACTTGTATAGG 57.628 37.037 0.00 0.00 0.00 2.57
1139 1238 9.495572 CTTATCTAAAGGAAGAAGAACACTTGT 57.504 33.333 0.00 0.00 0.00 3.16
1140 1239 9.712305 TCTTATCTAAAGGAAGAAGAACACTTG 57.288 33.333 0.00 0.00 31.38 3.16
1194 1295 3.855858 GAGAATCGTCCTTTTGCTCTCT 58.144 45.455 0.00 0.00 0.00 3.10
1209 1310 4.951963 CCTCCGCCGCCGAGAATC 62.952 72.222 9.97 0.00 36.29 2.52
1307 1415 0.246635 CGGTTGAATCAGAGGGACGT 59.753 55.000 0.00 0.00 0.00 4.34
1495 1604 5.295787 TCAGCATACGTACATCCAAATTTCC 59.704 40.000 0.00 0.00 0.00 3.13
1517 1626 9.783081 AGCATATATGATGAACAAATAGTGTCA 57.217 29.630 17.10 0.00 40.60 3.58
1574 1705 4.890088 TCCTTTAGCAGCTAAAAGAACGA 58.110 39.130 24.62 13.76 35.82 3.85
1975 2459 0.316204 GCAGCAAGCCAAACATCACT 59.684 50.000 0.00 0.00 37.23 3.41
2034 2518 1.016653 GTTTCGTCAGCTCCTCAGGC 61.017 60.000 0.00 0.00 0.00 4.85
2279 2774 2.735126 GCATCCATAACCCGCAAAACAG 60.735 50.000 0.00 0.00 0.00 3.16
2903 3433 6.451714 TGATATCCCCAAATCCCAGATTTTT 58.548 36.000 0.00 0.00 0.00 1.94
2904 3434 6.041910 TGATATCCCCAAATCCCAGATTTT 57.958 37.500 0.00 0.00 0.00 1.82
2905 3435 5.684853 TGATATCCCCAAATCCCAGATTT 57.315 39.130 0.00 0.00 0.00 2.17
2939 3469 5.166398 CGAAACTAAACACGGGAGTAGAAT 58.834 41.667 0.00 0.00 44.67 2.40
2949 3479 4.377022 CCATTCCTCACGAAACTAAACACG 60.377 45.833 0.00 0.00 33.08 4.49
2950 3480 4.083484 CCCATTCCTCACGAAACTAAACAC 60.083 45.833 0.00 0.00 33.08 3.32
2951 3481 4.069304 CCCATTCCTCACGAAACTAAACA 58.931 43.478 0.00 0.00 33.08 2.83
2952 3482 4.070009 ACCCATTCCTCACGAAACTAAAC 58.930 43.478 0.00 0.00 33.08 2.01
2953 3483 4.069304 CACCCATTCCTCACGAAACTAAA 58.931 43.478 0.00 0.00 33.08 1.85
3099 3629 1.937899 CTACCCCCGCATTTAGTTTCG 59.062 52.381 0.00 0.00 0.00 3.46
3108 3638 3.133365 GCCCATTCTACCCCCGCAT 62.133 63.158 0.00 0.00 0.00 4.73
3112 3642 1.076265 GGTTGCCCATTCTACCCCC 60.076 63.158 0.00 0.00 0.00 5.40
3190 3720 5.240844 GTGCCACAAACCCCTATATGAATAC 59.759 44.000 0.00 0.00 0.00 1.89
3214 3744 0.183014 AATGCATGGGAGCTCTCAGG 59.817 55.000 23.76 23.76 34.99 3.86
3224 3754 0.108233 CCAAACGGGAAATGCATGGG 60.108 55.000 0.00 0.00 40.01 4.00
3225 3755 0.607620 ACCAAACGGGAAATGCATGG 59.392 50.000 0.00 0.00 41.15 3.66
3245 3779 7.913789 ACACCTGAACCATATAGTAGACAAAA 58.086 34.615 0.00 0.00 0.00 2.44
3278 3812 5.751243 TGCCACACTCTAAAAAGAACTTC 57.249 39.130 0.00 0.00 0.00 3.01
3330 3864 1.002773 TGCTTCGGTTCCTTCCCTTAC 59.997 52.381 0.00 0.00 0.00 2.34
3331 3865 1.354101 TGCTTCGGTTCCTTCCCTTA 58.646 50.000 0.00 0.00 0.00 2.69
3333 3867 1.580059 TATGCTTCGGTTCCTTCCCT 58.420 50.000 0.00 0.00 0.00 4.20
3334 3868 2.222027 CATATGCTTCGGTTCCTTCCC 58.778 52.381 0.00 0.00 0.00 3.97
3456 3990 2.949644 GCAAGTCCCAACCCATGTATAC 59.050 50.000 0.00 0.00 0.00 1.47
3492 4026 3.477530 GGAGAATATGGCCACCAAGTAC 58.522 50.000 8.16 0.00 36.95 2.73
3514 4048 2.699251 GGTCGCACCAAGTAAAAAGG 57.301 50.000 1.01 0.00 38.42 3.11
3547 4081 6.939163 AGTTGATAATATGGCCATGTTCTCTC 59.061 38.462 28.71 22.26 0.00 3.20
3549 4083 7.365741 CAAGTTGATAATATGGCCATGTTCTC 58.634 38.462 28.71 26.51 0.00 2.87
3550 4084 6.266103 CCAAGTTGATAATATGGCCATGTTCT 59.734 38.462 28.71 20.33 0.00 3.01
3551 4085 6.040842 ACCAAGTTGATAATATGGCCATGTTC 59.959 38.462 28.71 17.45 34.45 3.18
3552 4086 5.898972 ACCAAGTTGATAATATGGCCATGTT 59.101 36.000 28.04 28.04 34.45 2.71
3553 4087 5.457686 ACCAAGTTGATAATATGGCCATGT 58.542 37.500 29.04 19.88 34.45 3.21
3554 4088 6.151648 CCTACCAAGTTGATAATATGGCCATG 59.848 42.308 29.04 8.08 34.45 3.66
3556 4090 5.457487 CCCTACCAAGTTGATAATATGGCCA 60.457 44.000 8.56 8.56 34.45 5.36
3557 4091 5.010282 CCCTACCAAGTTGATAATATGGCC 58.990 45.833 3.87 0.00 34.45 5.36
3558 4092 5.876357 TCCCTACCAAGTTGATAATATGGC 58.124 41.667 3.87 0.00 34.45 4.40
3601 4135 5.104109 AGCAGCATTAATCCCTACCAACTTA 60.104 40.000 0.00 0.00 0.00 2.24
3607 4141 1.882623 GCAGCAGCATTAATCCCTACC 59.117 52.381 0.00 0.00 41.58 3.18
3626 4160 6.635239 TCAAGCGTTAAAACTTACAAAGATGC 59.365 34.615 0.00 0.00 0.00 3.91
3630 4164 5.394322 CCGTCAAGCGTTAAAACTTACAAAG 59.606 40.000 0.00 0.00 39.32 2.77
3641 4175 1.862201 CACAAGACCGTCAAGCGTTAA 59.138 47.619 0.40 0.00 39.32 2.01
3660 4194 7.566760 TTACAAAGAAAGAGATGCTTGAACA 57.433 32.000 0.00 0.00 36.80 3.18
3699 4233 5.711506 ACTCCATAGATGTTTGCATTTGACA 59.288 36.000 0.00 0.00 35.07 3.58
3738 4339 9.634021 AACTCCTCTGTATCTCTTTTTCTTTTT 57.366 29.630 0.00 0.00 0.00 1.94
3747 4348 3.198853 GCCCAAACTCCTCTGTATCTCTT 59.801 47.826 0.00 0.00 0.00 2.85
3751 4352 1.480954 TCGCCCAAACTCCTCTGTATC 59.519 52.381 0.00 0.00 0.00 2.24
3752 4353 1.207329 GTCGCCCAAACTCCTCTGTAT 59.793 52.381 0.00 0.00 0.00 2.29
3813 4414 6.150140 GCCAGTTGAAGATTGTTCAGATACTT 59.850 38.462 0.00 0.00 0.00 2.24
3823 4424 3.322828 AGCAAATGCCAGTTGAAGATTGT 59.677 39.130 9.37 0.00 43.38 2.71
3833 4434 3.540314 TTGTTTTGAGCAAATGCCAGT 57.460 38.095 0.94 0.00 43.38 4.00
3859 4460 5.649395 TCTTATGGACAAATGAAGCTCCTTG 59.351 40.000 0.00 0.00 0.00 3.61
3860 4461 5.819991 TCTTATGGACAAATGAAGCTCCTT 58.180 37.500 0.00 0.00 0.00 3.36
3891 4492 2.224548 ACCCTAACCTGACTTGCAAGAC 60.225 50.000 32.50 25.93 0.00 3.01
3894 4495 4.042311 TCAATACCCTAACCTGACTTGCAA 59.958 41.667 0.00 0.00 0.00 4.08
3925 4546 1.674322 AATGGCCGAGTTCCCGTTG 60.674 57.895 0.00 0.00 0.00 4.10
3932 4553 1.559682 AGGTATGACAATGGCCGAGTT 59.440 47.619 0.00 0.00 0.00 3.01
3933 4554 1.204146 AGGTATGACAATGGCCGAGT 58.796 50.000 0.00 0.00 0.00 4.18
3997 4618 4.654091 AACATACACAGTGCAAAAGCTT 57.346 36.364 0.00 0.00 0.00 3.74
4032 4653 7.671398 TCTGAAGGATTTAGCCAGAAAGATTTT 59.329 33.333 0.00 0.00 30.80 1.82
4033 4654 7.177878 TCTGAAGGATTTAGCCAGAAAGATTT 58.822 34.615 0.00 0.00 30.80 2.17
4034 4655 6.725364 TCTGAAGGATTTAGCCAGAAAGATT 58.275 36.000 0.00 0.00 30.80 2.40
4035 4656 6.319048 TCTGAAGGATTTAGCCAGAAAGAT 57.681 37.500 0.00 0.00 30.80 2.40
4036 4657 5.762179 TCTGAAGGATTTAGCCAGAAAGA 57.238 39.130 0.00 0.00 30.80 2.52
4037 4658 6.824305 TTTCTGAAGGATTTAGCCAGAAAG 57.176 37.500 10.62 0.00 44.19 2.62
4040 4661 5.241403 TGTTTCTGAAGGATTTAGCCAGA 57.759 39.130 0.00 0.00 30.80 3.86
4041 4662 5.964958 TTGTTTCTGAAGGATTTAGCCAG 57.035 39.130 0.00 0.00 30.80 4.85
4042 4663 6.349280 CGAATTGTTTCTGAAGGATTTAGCCA 60.349 38.462 0.00 0.00 30.80 4.75
4043 4664 6.030228 CGAATTGTTTCTGAAGGATTTAGCC 58.970 40.000 0.00 0.00 30.80 3.93
4044 4665 6.030228 CCGAATTGTTTCTGAAGGATTTAGC 58.970 40.000 0.00 0.00 30.80 3.09
4045 4666 7.023575 CACCGAATTGTTTCTGAAGGATTTAG 58.976 38.462 0.00 0.00 32.19 1.85
4046 4667 6.712998 TCACCGAATTGTTTCTGAAGGATTTA 59.287 34.615 0.00 0.00 0.00 1.40
4047 4668 5.534654 TCACCGAATTGTTTCTGAAGGATTT 59.465 36.000 0.00 0.00 0.00 2.17
4048 4669 5.070001 TCACCGAATTGTTTCTGAAGGATT 58.930 37.500 0.00 0.00 0.00 3.01
4049 4670 4.651778 TCACCGAATTGTTTCTGAAGGAT 58.348 39.130 0.00 0.00 0.00 3.24
4050 4671 4.065088 CTCACCGAATTGTTTCTGAAGGA 58.935 43.478 0.00 0.00 0.00 3.36
4051 4672 4.065088 TCTCACCGAATTGTTTCTGAAGG 58.935 43.478 0.00 0.00 0.00 3.46
4052 4673 5.334414 CCTTCTCACCGAATTGTTTCTGAAG 60.334 44.000 0.00 0.00 0.00 3.02
4053 4674 4.515191 CCTTCTCACCGAATTGTTTCTGAA 59.485 41.667 0.00 0.00 0.00 3.02
4054 4675 4.065088 CCTTCTCACCGAATTGTTTCTGA 58.935 43.478 0.00 0.00 0.00 3.27
4055 4676 3.815401 ACCTTCTCACCGAATTGTTTCTG 59.185 43.478 0.00 0.00 0.00 3.02
4056 4677 3.815401 CACCTTCTCACCGAATTGTTTCT 59.185 43.478 0.00 0.00 0.00 2.52
4057 4678 3.813166 TCACCTTCTCACCGAATTGTTTC 59.187 43.478 0.00 0.00 0.00 2.78
4058 4679 3.815809 TCACCTTCTCACCGAATTGTTT 58.184 40.909 0.00 0.00 0.00 2.83
4059 4680 3.485463 TCACCTTCTCACCGAATTGTT 57.515 42.857 0.00 0.00 0.00 2.83
4060 4681 3.485463 TTCACCTTCTCACCGAATTGT 57.515 42.857 0.00 0.00 0.00 2.71
4077 4698 6.817641 ACATTTGTGTCTTCAAAAGCAATTCA 59.182 30.769 0.00 0.00 40.05 2.57
4111 4732 5.635280 CGTTACATGGCATGATACTCCTTAG 59.365 44.000 32.74 11.92 0.00 2.18
4113 4734 4.380531 CGTTACATGGCATGATACTCCTT 58.619 43.478 32.74 11.07 0.00 3.36
4159 4781 3.457610 TGATCGATGAATAGCACAGCA 57.542 42.857 0.54 0.00 0.00 4.41
4193 4815 1.933853 GAGACGCGAGCCATGTTTATT 59.066 47.619 15.93 0.00 0.00 1.40
4197 4819 0.747255 ATAGAGACGCGAGCCATGTT 59.253 50.000 15.93 0.00 0.00 2.71
4207 4829 7.243487 TGTTTTTGATCAATGAATAGAGACGC 58.757 34.615 9.40 0.00 0.00 5.19
4243 4865 1.681538 TGTTGGTTGCCGTACATGTT 58.318 45.000 2.30 0.00 0.00 2.71
4287 4909 4.301072 AGTCAGTTTGCTGGGCTTATAA 57.699 40.909 0.00 0.00 42.78 0.98
4347 4969 6.418057 AGGAGCTTGGAGAGATACAATAAG 57.582 41.667 0.00 0.00 0.00 1.73
4348 4970 5.010112 CGAGGAGCTTGGAGAGATACAATAA 59.990 44.000 0.00 0.00 0.00 1.40
4349 4971 4.520874 CGAGGAGCTTGGAGAGATACAATA 59.479 45.833 0.00 0.00 0.00 1.90
4350 4972 3.320541 CGAGGAGCTTGGAGAGATACAAT 59.679 47.826 0.00 0.00 0.00 2.71
4351 4973 2.690497 CGAGGAGCTTGGAGAGATACAA 59.310 50.000 0.00 0.00 0.00 2.41
4352 4974 2.302260 CGAGGAGCTTGGAGAGATACA 58.698 52.381 0.00 0.00 0.00 2.29
4353 4975 1.000717 GCGAGGAGCTTGGAGAGATAC 60.001 57.143 0.00 0.00 44.04 2.24
4354 4976 1.323412 GCGAGGAGCTTGGAGAGATA 58.677 55.000 0.00 0.00 44.04 1.98
4355 4977 2.123409 GCGAGGAGCTTGGAGAGAT 58.877 57.895 0.00 0.00 44.04 2.75
4356 4978 3.609703 GCGAGGAGCTTGGAGAGA 58.390 61.111 0.00 0.00 44.04 3.10
4366 4988 2.747855 GGGTTTGCTGGCGAGGAG 60.748 66.667 0.00 0.00 0.00 3.69
4367 4989 2.632602 TTTGGGTTTGCTGGCGAGGA 62.633 55.000 0.00 0.00 0.00 3.71
4368 4990 1.743321 TTTTGGGTTTGCTGGCGAGG 61.743 55.000 0.00 0.00 0.00 4.63
4369 4991 0.103937 TTTTTGGGTTTGCTGGCGAG 59.896 50.000 0.00 0.00 0.00 5.03
4370 4992 2.202866 TTTTTGGGTTTGCTGGCGA 58.797 47.368 0.00 0.00 0.00 5.54
4371 4993 4.844420 TTTTTGGGTTTGCTGGCG 57.156 50.000 0.00 0.00 0.00 5.69
4389 5011 9.099454 GCTTTTTCGTATAAGCTATGCCTATAT 57.901 33.333 9.38 0.00 42.62 0.86
4390 5012 8.092068 TGCTTTTTCGTATAAGCTATGCCTATA 58.908 33.333 15.77 0.00 45.37 1.31
4391 5013 6.934645 TGCTTTTTCGTATAAGCTATGCCTAT 59.065 34.615 15.77 0.00 45.37 2.57
4392 5014 6.285224 TGCTTTTTCGTATAAGCTATGCCTA 58.715 36.000 15.77 0.00 45.37 3.93
4393 5015 5.123227 TGCTTTTTCGTATAAGCTATGCCT 58.877 37.500 15.77 0.00 45.37 4.75
4394 5016 5.418310 TGCTTTTTCGTATAAGCTATGCC 57.582 39.130 15.77 0.00 45.37 4.40
4395 5017 4.906437 GCTGCTTTTTCGTATAAGCTATGC 59.094 41.667 15.77 13.28 45.37 3.14
4396 5018 6.018751 TCTGCTGCTTTTTCGTATAAGCTATG 60.019 38.462 15.77 8.87 45.37 2.23
4397 5019 6.018669 GTCTGCTGCTTTTTCGTATAAGCTAT 60.019 38.462 15.77 0.00 45.37 2.97
4398 5020 5.291128 GTCTGCTGCTTTTTCGTATAAGCTA 59.709 40.000 15.77 4.71 45.37 3.32
4399 5021 4.093556 GTCTGCTGCTTTTTCGTATAAGCT 59.906 41.667 15.77 0.00 45.37 3.74
4400 5022 4.142902 TGTCTGCTGCTTTTTCGTATAAGC 60.143 41.667 9.66 9.66 45.36 3.09
4401 5023 5.530519 TGTCTGCTGCTTTTTCGTATAAG 57.469 39.130 0.00 0.00 0.00 1.73
4402 5024 7.603963 TTATGTCTGCTGCTTTTTCGTATAA 57.396 32.000 0.00 0.00 0.00 0.98
4403 5025 7.786178 ATTATGTCTGCTGCTTTTTCGTATA 57.214 32.000 0.00 0.00 0.00 1.47
4404 5026 6.683974 ATTATGTCTGCTGCTTTTTCGTAT 57.316 33.333 0.00 0.00 0.00 3.06
4405 5027 7.603963 TTATTATGTCTGCTGCTTTTTCGTA 57.396 32.000 0.00 0.00 0.00 3.43
4406 5028 6.494893 TTATTATGTCTGCTGCTTTTTCGT 57.505 33.333 0.00 0.00 0.00 3.85
4407 5029 7.912250 AGATTTATTATGTCTGCTGCTTTTTCG 59.088 33.333 0.00 0.00 0.00 3.46
4408 5030 9.230932 GAGATTTATTATGTCTGCTGCTTTTTC 57.769 33.333 0.00 0.00 0.00 2.29
4409 5031 8.742777 TGAGATTTATTATGTCTGCTGCTTTTT 58.257 29.630 0.00 0.00 0.00 1.94
4410 5032 8.284945 TGAGATTTATTATGTCTGCTGCTTTT 57.715 30.769 0.00 0.00 0.00 2.27
4411 5033 7.870509 TGAGATTTATTATGTCTGCTGCTTT 57.129 32.000 0.00 0.00 0.00 3.51
4412 5034 7.772292 TCTTGAGATTTATTATGTCTGCTGCTT 59.228 33.333 0.00 0.00 0.00 3.91
4413 5035 7.278135 TCTTGAGATTTATTATGTCTGCTGCT 58.722 34.615 0.00 0.00 0.00 4.24
4414 5036 7.488187 TCTTGAGATTTATTATGTCTGCTGC 57.512 36.000 0.00 0.00 0.00 5.25
4432 5054 9.787532 TGAGTTTAATCTTTGTGTTTTCTTGAG 57.212 29.630 0.00 0.00 0.00 3.02
4454 5076 8.619546 GCTTTCTTTTGCTTCAGATATATGAGT 58.380 33.333 0.00 0.00 0.00 3.41
4455 5077 8.838365 AGCTTTCTTTTGCTTCAGATATATGAG 58.162 33.333 0.00 0.00 35.86 2.90
4456 5078 8.743085 AGCTTTCTTTTGCTTCAGATATATGA 57.257 30.769 0.00 0.00 35.86 2.15
4457 5079 8.838365 AGAGCTTTCTTTTGCTTCAGATATATG 58.162 33.333 0.00 0.00 39.91 1.78
4458 5080 8.977267 AGAGCTTTCTTTTGCTTCAGATATAT 57.023 30.769 0.00 0.00 39.91 0.86
4459 5081 8.043113 TGAGAGCTTTCTTTTGCTTCAGATATA 58.957 33.333 5.77 0.00 39.91 0.86
4460 5082 6.883217 TGAGAGCTTTCTTTTGCTTCAGATAT 59.117 34.615 5.77 0.00 39.91 1.63
4461 5083 6.233434 TGAGAGCTTTCTTTTGCTTCAGATA 58.767 36.000 5.77 0.00 39.91 1.98
4462 5084 5.068636 TGAGAGCTTTCTTTTGCTTCAGAT 58.931 37.500 5.77 0.00 39.91 2.90
4463 5085 4.454678 TGAGAGCTTTCTTTTGCTTCAGA 58.545 39.130 5.77 0.00 39.91 3.27
4464 5086 4.825546 TGAGAGCTTTCTTTTGCTTCAG 57.174 40.909 5.77 0.00 39.91 3.02
4465 5087 4.641989 ACTTGAGAGCTTTCTTTTGCTTCA 59.358 37.500 5.77 0.00 39.91 3.02
4466 5088 5.180367 ACTTGAGAGCTTTCTTTTGCTTC 57.820 39.130 5.77 0.00 39.91 3.86
4467 5089 5.346522 CAACTTGAGAGCTTTCTTTTGCTT 58.653 37.500 5.77 0.00 39.91 3.91
4468 5090 4.202090 CCAACTTGAGAGCTTTCTTTTGCT 60.202 41.667 5.77 0.00 42.82 3.91
4469 5091 4.047142 CCAACTTGAGAGCTTTCTTTTGC 58.953 43.478 5.77 0.00 0.00 3.68
4470 5092 5.277047 GTCCAACTTGAGAGCTTTCTTTTG 58.723 41.667 5.77 6.06 0.00 2.44
4471 5093 4.339530 GGTCCAACTTGAGAGCTTTCTTTT 59.660 41.667 5.77 0.00 0.00 2.27
4472 5094 3.885901 GGTCCAACTTGAGAGCTTTCTTT 59.114 43.478 5.77 0.00 0.00 2.52
4473 5095 3.117888 TGGTCCAACTTGAGAGCTTTCTT 60.118 43.478 5.77 0.00 0.00 2.52
4474 5096 2.439507 TGGTCCAACTTGAGAGCTTTCT 59.560 45.455 5.77 0.00 0.00 2.52
4475 5097 2.851195 TGGTCCAACTTGAGAGCTTTC 58.149 47.619 0.00 0.00 0.00 2.62
4476 5098 3.515602 ATGGTCCAACTTGAGAGCTTT 57.484 42.857 0.00 0.00 0.00 3.51
4477 5099 3.515602 AATGGTCCAACTTGAGAGCTT 57.484 42.857 0.00 3.25 0.00 3.74
4478 5100 3.515602 AAATGGTCCAACTTGAGAGCT 57.484 42.857 0.00 0.00 0.00 4.09
4479 5101 4.082733 GGTTAAATGGTCCAACTTGAGAGC 60.083 45.833 0.00 0.00 0.00 4.09
4480 5102 5.316987 AGGTTAAATGGTCCAACTTGAGAG 58.683 41.667 0.00 0.00 0.00 3.20
4481 5103 5.313712 GAGGTTAAATGGTCCAACTTGAGA 58.686 41.667 0.00 0.00 0.00 3.27
4482 5104 4.154195 CGAGGTTAAATGGTCCAACTTGAG 59.846 45.833 0.00 0.00 0.00 3.02
4483 5105 4.069304 CGAGGTTAAATGGTCCAACTTGA 58.931 43.478 0.00 0.00 0.00 3.02
4484 5106 4.069304 TCGAGGTTAAATGGTCCAACTTG 58.931 43.478 0.00 0.00 0.00 3.16
4485 5107 4.202430 ACTCGAGGTTAAATGGTCCAACTT 60.202 41.667 18.41 0.00 0.00 2.66
4486 5108 3.326880 ACTCGAGGTTAAATGGTCCAACT 59.673 43.478 18.41 0.00 0.00 3.16
4487 5109 3.671716 ACTCGAGGTTAAATGGTCCAAC 58.328 45.455 18.41 0.00 0.00 3.77
4488 5110 4.773674 TCTACTCGAGGTTAAATGGTCCAA 59.226 41.667 18.41 0.00 0.00 3.53
4489 5111 4.346730 TCTACTCGAGGTTAAATGGTCCA 58.653 43.478 18.41 0.00 0.00 4.02
4490 5112 4.996788 TCTACTCGAGGTTAAATGGTCC 57.003 45.455 18.41 0.00 0.00 4.46
4491 5113 6.338937 ACAATCTACTCGAGGTTAAATGGTC 58.661 40.000 18.41 0.00 0.00 4.02
4492 5114 6.295719 ACAATCTACTCGAGGTTAAATGGT 57.704 37.500 18.41 3.81 0.00 3.55
4493 5115 7.762615 TGTAACAATCTACTCGAGGTTAAATGG 59.237 37.037 18.41 3.19 31.35 3.16
4494 5116 8.697846 TGTAACAATCTACTCGAGGTTAAATG 57.302 34.615 18.41 10.62 31.35 2.32
4495 5117 9.367444 CTTGTAACAATCTACTCGAGGTTAAAT 57.633 33.333 18.41 0.00 31.35 1.40
4496 5118 8.579006 TCTTGTAACAATCTACTCGAGGTTAAA 58.421 33.333 18.41 6.59 31.35 1.52
4497 5119 8.025445 GTCTTGTAACAATCTACTCGAGGTTAA 58.975 37.037 18.41 0.00 31.35 2.01
4498 5120 7.533426 GTCTTGTAACAATCTACTCGAGGTTA 58.467 38.462 18.41 11.04 0.00 2.85
4499 5121 6.388278 GTCTTGTAACAATCTACTCGAGGTT 58.612 40.000 18.41 12.05 0.00 3.50
4500 5122 5.391736 CGTCTTGTAACAATCTACTCGAGGT 60.392 44.000 18.41 5.07 0.00 3.85
4501 5123 5.029014 CGTCTTGTAACAATCTACTCGAGG 58.971 45.833 18.41 0.00 0.00 4.63
4502 5124 4.496183 GCGTCTTGTAACAATCTACTCGAG 59.504 45.833 11.84 11.84 0.00 4.04
4503 5125 4.083164 TGCGTCTTGTAACAATCTACTCGA 60.083 41.667 0.00 0.00 0.00 4.04
4504 5126 4.030306 GTGCGTCTTGTAACAATCTACTCG 59.970 45.833 0.00 0.00 0.00 4.18
4505 5127 4.921515 TGTGCGTCTTGTAACAATCTACTC 59.078 41.667 0.00 0.00 0.00 2.59
4506 5128 4.684703 GTGTGCGTCTTGTAACAATCTACT 59.315 41.667 0.00 0.00 0.00 2.57
4507 5129 4.446385 TGTGTGCGTCTTGTAACAATCTAC 59.554 41.667 0.00 0.00 0.00 2.59
4508 5130 4.623002 TGTGTGCGTCTTGTAACAATCTA 58.377 39.130 0.00 0.00 0.00 1.98
4509 5131 3.462982 TGTGTGCGTCTTGTAACAATCT 58.537 40.909 0.00 0.00 0.00 2.40
4510 5132 3.870723 TGTGTGCGTCTTGTAACAATC 57.129 42.857 0.00 0.00 0.00 2.67
4511 5133 3.375610 TGTTGTGTGCGTCTTGTAACAAT 59.624 39.130 0.00 0.00 30.96 2.71
4512 5134 2.742589 TGTTGTGTGCGTCTTGTAACAA 59.257 40.909 0.00 0.00 0.00 2.83
4513 5135 2.347731 TGTTGTGTGCGTCTTGTAACA 58.652 42.857 0.00 0.00 0.00 2.41
4514 5136 2.286184 CCTGTTGTGTGCGTCTTGTAAC 60.286 50.000 0.00 0.00 0.00 2.50
4515 5137 1.937223 CCTGTTGTGTGCGTCTTGTAA 59.063 47.619 0.00 0.00 0.00 2.41
4516 5138 1.137282 TCCTGTTGTGTGCGTCTTGTA 59.863 47.619 0.00 0.00 0.00 2.41
4517 5139 0.107897 TCCTGTTGTGTGCGTCTTGT 60.108 50.000 0.00 0.00 0.00 3.16
4518 5140 0.304705 GTCCTGTTGTGTGCGTCTTG 59.695 55.000 0.00 0.00 0.00 3.02
4519 5141 1.151777 CGTCCTGTTGTGTGCGTCTT 61.152 55.000 0.00 0.00 0.00 3.01
4520 5142 1.591594 CGTCCTGTTGTGTGCGTCT 60.592 57.895 0.00 0.00 0.00 4.18
4521 5143 1.881252 ACGTCCTGTTGTGTGCGTC 60.881 57.895 0.00 0.00 0.00 5.19
4522 5144 2.171079 CACGTCCTGTTGTGTGCGT 61.171 57.895 0.00 0.00 0.00 5.24
4523 5145 2.625906 CACGTCCTGTTGTGTGCG 59.374 61.111 0.00 0.00 0.00 5.34
4525 5147 1.643292 CTGCACGTCCTGTTGTGTG 59.357 57.895 0.00 0.00 38.36 3.82
4526 5148 4.124910 CTGCACGTCCTGTTGTGT 57.875 55.556 0.00 0.00 38.36 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.