Multiple sequence alignment - TraesCS7D01G154000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G154000 chr7D 100.000 4343 0 0 1 4343 101782338 101777996 0.000000e+00 8021.0
1 TraesCS7D01G154000 chr7D 100.000 192 0 0 4556 4747 101777783 101777592 5.840000e-94 355.0
2 TraesCS7D01G154000 chr7D 85.644 202 16 9 4556 4747 263970371 263970173 2.900000e-47 200.0
3 TraesCS7D01G154000 chr7B 94.122 1412 61 13 1482 2884 59079140 59080538 0.000000e+00 2128.0
4 TraesCS7D01G154000 chr7B 96.124 903 33 2 1 903 59100056 59099156 0.000000e+00 1472.0
5 TraesCS7D01G154000 chr7B 94.776 670 34 1 2910 3579 670256471 670257139 0.000000e+00 1042.0
6 TraesCS7D01G154000 chr7B 91.049 782 31 13 3577 4343 59080524 59081281 0.000000e+00 1020.0
7 TraesCS7D01G154000 chr7B 91.935 558 27 3 939 1496 59078581 59079120 0.000000e+00 765.0
8 TraesCS7D01G154000 chr7B 80.793 328 37 14 2557 2867 134310960 134310642 2.860000e-57 233.0
9 TraesCS7D01G154000 chr1B 96.594 646 22 0 2933 3578 269218903 269218258 0.000000e+00 1072.0
10 TraesCS7D01G154000 chr1B 95.738 657 27 1 2928 3584 25227757 25227102 0.000000e+00 1057.0
11 TraesCS7D01G154000 chr1B 80.547 987 170 15 1523 2498 590091498 590092473 0.000000e+00 739.0
12 TraesCS7D01G154000 chr1B 79.500 1000 174 21 1490 2487 589977005 589977975 0.000000e+00 682.0
13 TraesCS7D01G154000 chr5B 94.760 687 33 3 2894 3579 67024581 67025265 0.000000e+00 1066.0
14 TraesCS7D01G154000 chr5B 95.859 652 27 0 2928 3579 700370847 700370196 0.000000e+00 1055.0
15 TraesCS7D01G154000 chr5B 94.682 677 35 1 2902 3578 560002667 560001992 0.000000e+00 1050.0
16 TraesCS7D01G154000 chr5B 89.133 773 62 11 3577 4343 488828020 488828776 0.000000e+00 942.0
17 TraesCS7D01G154000 chr5B 87.166 187 23 1 4558 4744 528934261 528934446 1.340000e-50 211.0
18 TraesCS7D01G154000 chr3D 95.489 665 27 1 2917 3578 559108822 559109486 0.000000e+00 1059.0
19 TraesCS7D01G154000 chr3D 79.600 951 158 20 1543 2469 17698748 17699686 0.000000e+00 649.0
20 TraesCS7D01G154000 chr3D 92.326 417 25 6 3577 3992 481517413 481517823 1.900000e-163 586.0
21 TraesCS7D01G154000 chr3D 76.316 950 164 31 1106 2008 17343131 17342196 7.240000e-123 451.0
22 TraesCS7D01G154000 chr3D 82.332 549 50 32 3827 4343 385436116 385436649 2.620000e-117 433.0
23 TraesCS7D01G154000 chr3D 89.529 191 17 3 4556 4744 385436591 385436780 6.140000e-59 239.0
24 TraesCS7D01G154000 chr3D 86.842 190 19 5 4558 4744 540129964 540130150 1.730000e-49 207.0
25 TraesCS7D01G154000 chr3D 86.232 138 17 2 727 863 23855852 23855716 1.060000e-31 148.0
26 TraesCS7D01G154000 chr6B 95.981 647 26 0 2933 3579 21063405 21064051 0.000000e+00 1051.0
27 TraesCS7D01G154000 chr6B 95.840 649 27 0 2928 3576 611352267 611351619 0.000000e+00 1050.0
28 TraesCS7D01G154000 chr6B 86.675 758 66 21 3585 4319 76199197 76199942 0.000000e+00 808.0
29 TraesCS7D01G154000 chr6B 87.912 455 55 0 1 455 660563541 660563087 1.940000e-148 536.0
30 TraesCS7D01G154000 chr6B 78.006 341 40 18 2561 2867 5321196 5320857 1.050000e-41 182.0
31 TraesCS7D01G154000 chr6B 76.812 345 45 19 2557 2867 72372859 72373202 1.370000e-35 161.0
32 TraesCS7D01G154000 chr5D 88.546 777 64 15 3585 4343 529843616 529842847 0.000000e+00 918.0
33 TraesCS7D01G154000 chr5D 87.466 367 27 8 3990 4343 382093847 382093487 5.720000e-109 405.0
34 TraesCS7D01G154000 chr5D 82.774 447 44 16 3916 4343 407776937 407776505 7.500000e-98 368.0
35 TraesCS7D01G154000 chr5D 89.062 192 21 0 4556 4747 529842905 529842714 6.140000e-59 239.0
36 TraesCS7D01G154000 chr5D 85.572 201 19 6 4556 4747 382093545 382093346 8.060000e-48 202.0
37 TraesCS7D01G154000 chr5D 85.644 202 18 6 4556 4747 446079264 446079064 8.060000e-48 202.0
38 TraesCS7D01G154000 chr5D 73.364 428 87 21 1587 2002 65009422 65009834 2.980000e-27 134.0
39 TraesCS7D01G154000 chr7A 97.232 542 14 1 1 542 105640823 105640283 0.000000e+00 917.0
40 TraesCS7D01G154000 chr7A 88.151 768 66 14 3577 4330 39663456 39664212 0.000000e+00 891.0
41 TraesCS7D01G154000 chr7A 81.973 294 32 10 4063 4343 126753464 126753179 3.700000e-56 230.0
42 TraesCS7D01G154000 chr2B 88.303 778 71 17 3577 4343 795590442 795589674 0.000000e+00 915.0
43 TraesCS7D01G154000 chr2B 87.005 631 53 15 3576 4197 643080601 643079991 0.000000e+00 684.0
44 TraesCS7D01G154000 chr2B 82.735 446 49 18 3916 4343 690735543 690735108 5.800000e-99 372.0
45 TraesCS7D01G154000 chr2B 88.542 96 6 5 4250 4343 697710863 697710771 1.400000e-20 111.0
46 TraesCS7D01G154000 chr1A 77.971 1439 249 44 1107 2499 533409286 533410702 0.000000e+00 839.0
47 TraesCS7D01G154000 chr1A 80.000 1000 169 20 1490 2487 533323837 533324807 0.000000e+00 710.0
48 TraesCS7D01G154000 chr1A 83.217 143 22 2 755 896 29044402 29044543 3.860000e-26 130.0
49 TraesCS7D01G154000 chr1A 73.279 247 55 10 1674 1913 533446263 533446505 3.940000e-11 80.5
50 TraesCS7D01G154000 chr6D 77.996 1427 234 47 1109 2474 417775857 417777264 0.000000e+00 822.0
51 TraesCS7D01G154000 chr6D 77.770 1435 228 51 1111 2474 417752071 417750657 0.000000e+00 798.0
52 TraesCS7D01G154000 chr6D 87.037 540 42 14 3816 4341 87489178 87488653 6.850000e-163 584.0
53 TraesCS7D01G154000 chr6D 88.132 455 54 0 1 455 436833248 436833702 4.180000e-150 542.0
54 TraesCS7D01G154000 chr6D 87.065 201 15 6 4556 4747 473513377 473513179 2.880000e-52 217.0
55 TraesCS7D01G154000 chr3B 88.029 685 62 8 3577 4256 813791452 813792121 0.000000e+00 793.0
56 TraesCS7D01G154000 chr3B 86.105 439 61 0 2036 2474 24901721 24901283 1.550000e-129 473.0
57 TraesCS7D01G154000 chr3B 81.529 314 44 10 1699 2008 24902082 24901779 3.670000e-61 246.0
58 TraesCS7D01G154000 chr3B 81.395 86 16 0 752 837 541513359 541513444 2.370000e-08 71.3
59 TraesCS7D01G154000 chr6A 81.165 961 144 20 1543 2474 560192410 560191458 0.000000e+00 737.0
60 TraesCS7D01G154000 chr6A 76.591 1414 257 47 1109 2470 560444263 560445654 0.000000e+00 710.0
61 TraesCS7D01G154000 chr6A 87.692 455 56 0 1 455 585109427 585109881 9.050000e-147 531.0
62 TraesCS7D01G154000 chr1D 79.855 963 161 20 1541 2487 436113287 436114232 0.000000e+00 673.0
63 TraesCS7D01G154000 chr1D 78.663 1017 179 25 1491 2498 436120362 436121349 4.000000e-180 641.0
64 TraesCS7D01G154000 chr1D 73.663 243 55 9 1674 1913 436187989 436188225 8.460000e-13 86.1
65 TraesCS7D01G154000 chr2A 82.511 446 51 18 3916 4343 35578122 35577686 2.700000e-97 366.0
66 TraesCS7D01G154000 chr3A 87.368 190 23 1 4556 4744 609823273 609823462 2.880000e-52 217.0
67 TraesCS7D01G154000 chr4B 82.857 175 30 0 729 903 63120194 63120368 1.770000e-34 158.0
68 TraesCS7D01G154000 chrUn 87.500 88 10 1 749 836 23529378 23529292 3.020000e-17 100.0
69 TraesCS7D01G154000 chrUn 80.000 110 13 8 799 903 23529291 23529186 6.590000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G154000 chr7D 101777592 101782338 4746 True 4188.000000 8021 100.000000 1 4747 2 chr7D.!!$R2 4746
1 TraesCS7D01G154000 chr7B 59099156 59100056 900 True 1472.000000 1472 96.124000 1 903 1 chr7B.!!$R1 902
2 TraesCS7D01G154000 chr7B 59078581 59081281 2700 False 1304.333333 2128 92.368667 939 4343 3 chr7B.!!$F2 3404
3 TraesCS7D01G154000 chr7B 670256471 670257139 668 False 1042.000000 1042 94.776000 2910 3579 1 chr7B.!!$F1 669
4 TraesCS7D01G154000 chr1B 269218258 269218903 645 True 1072.000000 1072 96.594000 2933 3578 1 chr1B.!!$R2 645
5 TraesCS7D01G154000 chr1B 25227102 25227757 655 True 1057.000000 1057 95.738000 2928 3584 1 chr1B.!!$R1 656
6 TraesCS7D01G154000 chr1B 590091498 590092473 975 False 739.000000 739 80.547000 1523 2498 1 chr1B.!!$F2 975
7 TraesCS7D01G154000 chr1B 589977005 589977975 970 False 682.000000 682 79.500000 1490 2487 1 chr1B.!!$F1 997
8 TraesCS7D01G154000 chr5B 67024581 67025265 684 False 1066.000000 1066 94.760000 2894 3579 1 chr5B.!!$F1 685
9 TraesCS7D01G154000 chr5B 700370196 700370847 651 True 1055.000000 1055 95.859000 2928 3579 1 chr5B.!!$R2 651
10 TraesCS7D01G154000 chr5B 560001992 560002667 675 True 1050.000000 1050 94.682000 2902 3578 1 chr5B.!!$R1 676
11 TraesCS7D01G154000 chr5B 488828020 488828776 756 False 942.000000 942 89.133000 3577 4343 1 chr5B.!!$F2 766
12 TraesCS7D01G154000 chr3D 559108822 559109486 664 False 1059.000000 1059 95.489000 2917 3578 1 chr3D.!!$F4 661
13 TraesCS7D01G154000 chr3D 17698748 17699686 938 False 649.000000 649 79.600000 1543 2469 1 chr3D.!!$F1 926
14 TraesCS7D01G154000 chr3D 17342196 17343131 935 True 451.000000 451 76.316000 1106 2008 1 chr3D.!!$R1 902
15 TraesCS7D01G154000 chr3D 385436116 385436780 664 False 336.000000 433 85.930500 3827 4744 2 chr3D.!!$F5 917
16 TraesCS7D01G154000 chr6B 21063405 21064051 646 False 1051.000000 1051 95.981000 2933 3579 1 chr6B.!!$F1 646
17 TraesCS7D01G154000 chr6B 611351619 611352267 648 True 1050.000000 1050 95.840000 2928 3576 1 chr6B.!!$R2 648
18 TraesCS7D01G154000 chr6B 76199197 76199942 745 False 808.000000 808 86.675000 3585 4319 1 chr6B.!!$F3 734
19 TraesCS7D01G154000 chr5D 529842714 529843616 902 True 578.500000 918 88.804000 3585 4747 2 chr5D.!!$R4 1162
20 TraesCS7D01G154000 chr5D 382093346 382093847 501 True 303.500000 405 86.519000 3990 4747 2 chr5D.!!$R3 757
21 TraesCS7D01G154000 chr7A 105640283 105640823 540 True 917.000000 917 97.232000 1 542 1 chr7A.!!$R1 541
22 TraesCS7D01G154000 chr7A 39663456 39664212 756 False 891.000000 891 88.151000 3577 4330 1 chr7A.!!$F1 753
23 TraesCS7D01G154000 chr2B 795589674 795590442 768 True 915.000000 915 88.303000 3577 4343 1 chr2B.!!$R4 766
24 TraesCS7D01G154000 chr2B 643079991 643080601 610 True 684.000000 684 87.005000 3576 4197 1 chr2B.!!$R1 621
25 TraesCS7D01G154000 chr1A 533409286 533410702 1416 False 839.000000 839 77.971000 1107 2499 1 chr1A.!!$F3 1392
26 TraesCS7D01G154000 chr1A 533323837 533324807 970 False 710.000000 710 80.000000 1490 2487 1 chr1A.!!$F2 997
27 TraesCS7D01G154000 chr6D 417775857 417777264 1407 False 822.000000 822 77.996000 1109 2474 1 chr6D.!!$F1 1365
28 TraesCS7D01G154000 chr6D 417750657 417752071 1414 True 798.000000 798 77.770000 1111 2474 1 chr6D.!!$R2 1363
29 TraesCS7D01G154000 chr6D 87488653 87489178 525 True 584.000000 584 87.037000 3816 4341 1 chr6D.!!$R1 525
30 TraesCS7D01G154000 chr3B 813791452 813792121 669 False 793.000000 793 88.029000 3577 4256 1 chr3B.!!$F2 679
31 TraesCS7D01G154000 chr3B 24901283 24902082 799 True 359.500000 473 83.817000 1699 2474 2 chr3B.!!$R1 775
32 TraesCS7D01G154000 chr6A 560191458 560192410 952 True 737.000000 737 81.165000 1543 2474 1 chr6A.!!$R1 931
33 TraesCS7D01G154000 chr6A 560444263 560445654 1391 False 710.000000 710 76.591000 1109 2470 1 chr6A.!!$F1 1361
34 TraesCS7D01G154000 chr1D 436113287 436114232 945 False 673.000000 673 79.855000 1541 2487 1 chr1D.!!$F1 946
35 TraesCS7D01G154000 chr1D 436120362 436121349 987 False 641.000000 641 78.663000 1491 2498 1 chr1D.!!$F2 1007

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
937 938 0.041312 CACCAAAGAGTTCCAACGCG 60.041 55.0 3.53 3.53 33.71 6.01 F
2674 2845 0.035534 TGCCATGGTCGTATTGTGCT 60.036 50.0 14.67 0.00 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2890 3061 0.181587 TGCGTGAGGTTGGAAAGGAA 59.818 50.0 0.0 0.0 0.00 3.36 R
4630 4912 7.112452 ACAAAACAATGAAGCTTTCTAAGGT 57.888 32.0 0.0 0.0 41.85 3.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 2.368878 ATCCTCCAGGGGAAGCCC 60.369 66.667 0.00 0.00 44.51 5.19
278 279 1.797211 CGATCCTGGAGCGGTACCTC 61.797 65.000 25.57 0.94 37.82 3.85
590 591 3.013219 CCACTCTCTGATCGAAGACTGA 58.987 50.000 0.00 0.00 42.51 3.41
642 643 8.731605 GGAAATACGAGGAAGAATTCTTTTCTT 58.268 33.333 21.33 16.52 46.56 2.52
644 645 5.948992 ACGAGGAAGAATTCTTTTCTTGG 57.051 39.130 26.41 20.68 46.56 3.61
684 685 6.659776 AGCGTTTTTCTCACTATGTTTTCTC 58.340 36.000 0.00 0.00 0.00 2.87
773 774 0.593128 AGCACATGCCAACTTCGAAC 59.407 50.000 0.00 0.00 43.38 3.95
775 776 0.586319 CACATGCCAACTTCGAACGT 59.414 50.000 0.00 0.00 0.00 3.99
801 802 4.090930 TCGATGACAAGTTTAGTTAAGCGC 59.909 41.667 0.00 0.00 0.00 5.92
840 841 3.382865 TGACAAGCATGGCAACTTTTGTA 59.617 39.130 0.00 0.00 43.21 2.41
841 842 4.039004 TGACAAGCATGGCAACTTTTGTAT 59.961 37.500 0.00 0.00 43.21 2.29
843 844 5.367302 ACAAGCATGGCAACTTTTGTATTT 58.633 33.333 3.61 0.00 37.61 1.40
844 845 5.466393 ACAAGCATGGCAACTTTTGTATTTC 59.534 36.000 3.61 0.00 37.61 2.17
878 879 0.249489 AGAAGCCTGTCGTGTGTCAC 60.249 55.000 0.00 0.00 0.00 3.67
881 882 1.067416 GCCTGTCGTGTGTCACTGA 59.933 57.895 4.27 0.00 31.34 3.41
896 897 8.946085 GTGTGTCACTGAAATTTATCATCCTTA 58.054 33.333 4.27 0.00 0.00 2.69
903 904 7.010183 ACTGAAATTTATCATCCTTACGTGACG 59.990 37.037 2.24 2.24 0.00 4.35
904 905 6.256975 TGAAATTTATCATCCTTACGTGACGG 59.743 38.462 10.66 0.00 0.00 4.79
905 906 4.724074 TTTATCATCCTTACGTGACGGT 57.276 40.909 10.66 0.00 0.00 4.83
906 907 2.579207 ATCATCCTTACGTGACGGTG 57.421 50.000 10.66 0.00 0.00 4.94
907 908 0.108992 TCATCCTTACGTGACGGTGC 60.109 55.000 10.66 0.00 0.00 5.01
908 909 1.082117 CATCCTTACGTGACGGTGCC 61.082 60.000 10.66 0.00 0.00 5.01
909 910 2.552585 ATCCTTACGTGACGGTGCCG 62.553 60.000 10.66 9.29 46.03 5.69
921 922 4.030452 GTGCCGTTGCTCTGCACC 62.030 66.667 14.18 0.00 46.52 5.01
922 923 4.560743 TGCCGTTGCTCTGCACCA 62.561 61.111 0.00 0.00 38.71 4.17
923 924 3.286751 GCCGTTGCTCTGCACCAA 61.287 61.111 0.00 0.00 38.71 3.67
924 925 2.844451 GCCGTTGCTCTGCACCAAA 61.844 57.895 0.00 0.00 38.71 3.28
925 926 1.283793 CCGTTGCTCTGCACCAAAG 59.716 57.895 0.00 0.00 38.71 2.77
926 927 1.165907 CCGTTGCTCTGCACCAAAGA 61.166 55.000 0.00 0.00 38.71 2.52
927 928 0.236711 CGTTGCTCTGCACCAAAGAG 59.763 55.000 0.00 0.00 43.42 2.85
928 929 1.312815 GTTGCTCTGCACCAAAGAGT 58.687 50.000 2.31 0.00 42.68 3.24
929 930 1.678101 GTTGCTCTGCACCAAAGAGTT 59.322 47.619 2.31 0.00 42.68 3.01
930 931 1.597742 TGCTCTGCACCAAAGAGTTC 58.402 50.000 2.31 0.00 42.68 3.01
931 932 0.877743 GCTCTGCACCAAAGAGTTCC 59.122 55.000 2.31 0.00 42.68 3.62
932 933 1.815408 GCTCTGCACCAAAGAGTTCCA 60.815 52.381 2.31 0.00 42.68 3.53
933 934 2.575532 CTCTGCACCAAAGAGTTCCAA 58.424 47.619 0.00 0.00 37.08 3.53
934 935 2.291741 CTCTGCACCAAAGAGTTCCAAC 59.708 50.000 0.00 0.00 37.08 3.77
935 936 1.002468 CTGCACCAAAGAGTTCCAACG 60.002 52.381 0.00 0.00 0.00 4.10
936 937 0.317854 GCACCAAAGAGTTCCAACGC 60.318 55.000 0.00 0.00 0.00 4.84
937 938 0.041312 CACCAAAGAGTTCCAACGCG 60.041 55.000 3.53 3.53 33.71 6.01
938 939 1.164041 ACCAAAGAGTTCCAACGCGG 61.164 55.000 12.47 0.00 33.71 6.46
939 940 1.574428 CAAAGAGTTCCAACGCGGG 59.426 57.895 12.47 2.26 33.71 6.13
940 941 0.882927 CAAAGAGTTCCAACGCGGGA 60.883 55.000 12.47 5.32 33.71 5.14
941 942 0.179040 AAAGAGTTCCAACGCGGGAA 60.179 50.000 12.47 12.28 44.50 3.97
957 958 2.124320 AAGCACAACCACCGCACT 60.124 55.556 0.00 0.00 0.00 4.40
966 967 0.393808 ACCACCGCACTGAACTTTGT 60.394 50.000 0.00 0.00 0.00 2.83
1035 1036 2.665000 CTCCGGTGCCAGTGACAT 59.335 61.111 0.00 0.00 0.00 3.06
1047 1048 0.607489 AGTGACATTGCTGGTGAGGC 60.607 55.000 0.00 0.00 0.00 4.70
1048 1049 0.890542 GTGACATTGCTGGTGAGGCA 60.891 55.000 0.00 0.00 37.97 4.75
1049 1050 0.038599 TGACATTGCTGGTGAGGCAT 59.961 50.000 0.00 0.00 39.54 4.40
1050 1051 0.737219 GACATTGCTGGTGAGGCATC 59.263 55.000 0.00 0.00 39.54 3.91
1051 1052 0.682209 ACATTGCTGGTGAGGCATCC 60.682 55.000 0.00 0.00 39.54 3.51
1052 1053 0.681887 CATTGCTGGTGAGGCATCCA 60.682 55.000 0.00 0.00 39.54 3.41
1053 1054 0.260816 ATTGCTGGTGAGGCATCCAT 59.739 50.000 0.00 0.00 39.54 3.41
1054 1055 0.394762 TTGCTGGTGAGGCATCCATC 60.395 55.000 0.00 0.00 39.54 3.51
1055 1056 1.225426 GCTGGTGAGGCATCCATCA 59.775 57.895 0.00 0.00 33.01 3.07
1056 1057 1.099879 GCTGGTGAGGCATCCATCAC 61.100 60.000 0.00 0.00 44.10 3.06
1057 1058 0.253894 CTGGTGAGGCATCCATCACA 59.746 55.000 3.52 0.00 46.14 3.58
1069 1070 4.774124 CATCCATCACACATCAGTAACCT 58.226 43.478 0.00 0.00 0.00 3.50
1437 1474 1.067060 CCATGCCGTGATCTTCGACTA 59.933 52.381 11.24 0.49 0.00 2.59
1712 1830 2.622942 GGCATTCTGGTGAACACTTTCA 59.377 45.455 4.96 0.00 39.55 2.69
1713 1831 3.304928 GGCATTCTGGTGAACACTTTCAG 60.305 47.826 4.96 4.55 42.60 3.02
1720 1838 1.527311 GTGAACACTTTCAGGTCGCTC 59.473 52.381 0.00 0.00 42.60 5.03
1815 1942 1.739049 GACCTCTCATCGGGAGCAG 59.261 63.158 0.75 0.81 43.70 4.24
1917 2047 4.910956 CTTCGGGAGCATGACGAA 57.089 55.556 0.00 5.88 43.39 3.85
1946 2076 3.137459 AGTCGGAGGAGCAGCTCG 61.137 66.667 16.47 5.59 0.00 5.03
1981 2111 2.671070 CTGGACAACTCCGGCCAT 59.329 61.111 2.24 0.00 39.88 4.40
2575 2745 4.452455 CGACCACTTTAGCTGATTTCAGTT 59.548 41.667 9.21 5.86 45.45 3.16
2602 2772 7.067615 TGCTGATTTTTAGTTTTGTGGTCAGTA 59.932 33.333 0.00 0.00 34.56 2.74
2637 2807 6.584563 GCCGTTGAATTGTGCTTTAAGATTTA 59.415 34.615 0.00 0.00 0.00 1.40
2640 2810 9.128107 CGTTGAATTGTGCTTTAAGATTTATGT 57.872 29.630 0.00 0.00 0.00 2.29
2672 2843 3.567576 TTTTGCCATGGTCGTATTGTG 57.432 42.857 14.67 0.00 0.00 3.33
2674 2845 0.035534 TGCCATGGTCGTATTGTGCT 60.036 50.000 14.67 0.00 0.00 4.40
2675 2846 0.378257 GCCATGGTCGTATTGTGCTG 59.622 55.000 14.67 0.00 0.00 4.41
2676 2847 1.737838 CCATGGTCGTATTGTGCTGT 58.262 50.000 2.57 0.00 0.00 4.40
2677 2848 2.083774 CCATGGTCGTATTGTGCTGTT 58.916 47.619 2.57 0.00 0.00 3.16
2679 2850 3.491356 CATGGTCGTATTGTGCTGTTTG 58.509 45.455 0.00 0.00 0.00 2.93
2681 2852 2.147958 GGTCGTATTGTGCTGTTTGGA 58.852 47.619 0.00 0.00 0.00 3.53
2682 2853 2.747446 GGTCGTATTGTGCTGTTTGGAT 59.253 45.455 0.00 0.00 0.00 3.41
2683 2854 3.190535 GGTCGTATTGTGCTGTTTGGATT 59.809 43.478 0.00 0.00 0.00 3.01
2684 2855 4.403453 GTCGTATTGTGCTGTTTGGATTC 58.597 43.478 0.00 0.00 0.00 2.52
2685 2856 3.124466 TCGTATTGTGCTGTTTGGATTCG 59.876 43.478 0.00 0.00 0.00 3.34
2686 2857 3.124466 CGTATTGTGCTGTTTGGATTCGA 59.876 43.478 0.00 0.00 0.00 3.71
2687 2858 3.559238 ATTGTGCTGTTTGGATTCGAC 57.441 42.857 0.00 0.00 0.00 4.20
2688 2859 2.254546 TGTGCTGTTTGGATTCGACT 57.745 45.000 0.00 0.00 0.00 4.18
2689 2860 1.872952 TGTGCTGTTTGGATTCGACTG 59.127 47.619 0.00 0.00 0.00 3.51
2690 2861 2.143122 GTGCTGTTTGGATTCGACTGA 58.857 47.619 0.00 0.00 0.00 3.41
2691 2862 2.096218 GTGCTGTTTGGATTCGACTGAC 60.096 50.000 0.00 0.00 0.00 3.51
2692 2863 2.143122 GCTGTTTGGATTCGACTGACA 58.857 47.619 0.00 0.00 0.00 3.58
2693 2864 2.744202 GCTGTTTGGATTCGACTGACAT 59.256 45.455 0.00 0.00 0.00 3.06
2694 2865 3.181516 GCTGTTTGGATTCGACTGACATC 60.182 47.826 0.00 0.00 0.00 3.06
2695 2866 4.248859 CTGTTTGGATTCGACTGACATCT 58.751 43.478 0.00 0.00 0.00 2.90
2696 2867 5.400066 TGTTTGGATTCGACTGACATCTA 57.600 39.130 0.00 0.00 0.00 1.98
2697 2868 5.977635 TGTTTGGATTCGACTGACATCTAT 58.022 37.500 0.00 0.00 0.00 1.98
2713 2884 7.500992 TGACATCTATTTTGGGTCAGTAGATC 58.499 38.462 0.00 0.00 33.88 2.75
2715 2886 7.731054 ACATCTATTTTGGGTCAGTAGATCTC 58.269 38.462 0.00 0.00 31.59 2.75
2716 2887 7.345653 ACATCTATTTTGGGTCAGTAGATCTCA 59.654 37.037 0.00 0.00 31.59 3.27
2745 2916 2.230992 GCTGGATTTTGGTGTGTGCATA 59.769 45.455 0.00 0.00 0.00 3.14
2863 3034 7.360861 CGGATGTTGAGTGTGTGTAAATGTATT 60.361 37.037 0.00 0.00 0.00 1.89
2864 3035 7.962918 GGATGTTGAGTGTGTGTAAATGTATTC 59.037 37.037 0.00 0.00 0.00 1.75
2865 3036 7.793927 TGTTGAGTGTGTGTAAATGTATTCA 57.206 32.000 0.00 0.00 0.00 2.57
2866 3037 8.389779 TGTTGAGTGTGTGTAAATGTATTCAT 57.610 30.769 0.00 0.00 35.59 2.57
2867 3038 9.495572 TGTTGAGTGTGTGTAAATGTATTCATA 57.504 29.630 0.00 0.00 33.49 2.15
2868 3039 9.755064 GTTGAGTGTGTGTAAATGTATTCATAC 57.245 33.333 0.00 0.00 33.49 2.39
2869 3040 9.495572 TTGAGTGTGTGTAAATGTATTCATACA 57.504 29.630 2.13 2.13 46.21 2.29
2870 3041 9.495572 TGAGTGTGTGTAAATGTATTCATACAA 57.504 29.630 3.78 0.00 45.40 2.41
2871 3042 9.973246 GAGTGTGTGTAAATGTATTCATACAAG 57.027 33.333 3.78 0.00 45.40 3.16
2872 3043 9.502091 AGTGTGTGTAAATGTATTCATACAAGT 57.498 29.630 3.78 0.00 45.40 3.16
2884 3055 9.940166 TGTATTCATACAAGTACTACATGTACG 57.060 33.333 7.83 1.34 44.74 3.67
2885 3056 9.941664 GTATTCATACAAGTACTACATGTACGT 57.058 33.333 7.83 7.26 42.89 3.57
2900 3071 2.299582 TGTACGTCGGATTCCTTTCCAA 59.700 45.455 0.00 0.00 35.34 3.53
2955 3129 3.584848 CTCCTCTTCCTCCTCCAAGAAAA 59.415 47.826 0.00 0.00 0.00 2.29
2981 3155 4.373116 GGTTCGTGCCTCTCGCCA 62.373 66.667 0.00 0.00 36.24 5.69
3242 3416 3.319405 GTCTCCGGCAGATCTATCTTTGA 59.681 47.826 0.00 0.00 34.22 2.69
3244 3418 5.184096 GTCTCCGGCAGATCTATCTTTGATA 59.816 44.000 0.00 0.00 34.22 2.15
3385 3559 2.203972 TTAGCACGACGACTTCCCGG 62.204 60.000 0.00 0.00 0.00 5.73
3405 3579 5.068198 CCCGGCTGTCTACTACAATAAGTTA 59.932 44.000 0.00 0.00 37.74 2.24
3484 3658 1.667724 GCTTGTAGTCGTCGCTAGGTA 59.332 52.381 0.00 0.00 0.00 3.08
3678 3861 7.856894 GCATTTTTGTGCTAATTGTGTGATTTT 59.143 29.630 0.00 0.00 41.82 1.82
3735 3920 6.700352 ACCAATGCTAATTGTTTTGTGCTAT 58.300 32.000 0.00 0.00 41.46 2.97
4633 4915 9.822727 TTCTTCTTAAAGGGAATCATTTTACCT 57.177 29.630 0.00 0.00 33.03 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
294 295 2.100631 GCATCTCCACCACGTTCCG 61.101 63.158 0.00 0.00 0.00 4.30
612 613 7.130681 AGAATTCTTCCTCGTATTTCCTCAT 57.869 36.000 0.88 0.00 0.00 2.90
642 643 0.317160 CTAGCCCGATATCGTTGCCA 59.683 55.000 24.69 15.51 36.35 4.92
644 645 1.344942 CGCTAGCCCGATATCGTTGC 61.345 60.000 22.81 22.53 37.74 4.17
684 685 9.573133 GGGTGATATGTAATCAGTTTCAAAAAG 57.427 33.333 0.00 0.00 0.00 2.27
721 722 0.528924 CGACACGTATCAGGGTCCAA 59.471 55.000 0.00 0.00 41.30 3.53
722 723 0.322726 TCGACACGTATCAGGGTCCA 60.323 55.000 0.00 0.00 41.30 4.02
773 774 7.058016 GCTTAACTAAACTTGTCATCGAAAACG 59.942 37.037 0.00 0.00 0.00 3.60
775 776 7.067116 CGCTTAACTAAACTTGTCATCGAAAA 58.933 34.615 0.00 0.00 0.00 2.29
783 784 2.733026 TCCGCGCTTAACTAAACTTGTC 59.267 45.455 5.56 0.00 0.00 3.18
796 797 1.732259 CTAAAGTTGTCATCCGCGCTT 59.268 47.619 5.56 0.00 0.00 4.68
821 822 5.466058 TGAAATACAAAAGTTGCCATGCTTG 59.534 36.000 0.00 0.00 0.00 4.01
840 841 8.424133 AGGCTTCTGTCAAAAATAAACTGAAAT 58.576 29.630 0.00 0.00 32.71 2.17
841 842 7.706179 CAGGCTTCTGTCAAAAATAAACTGAAA 59.294 33.333 0.00 0.00 32.71 2.69
843 844 6.738114 CAGGCTTCTGTCAAAAATAAACTGA 58.262 36.000 0.00 0.00 33.96 3.41
844 845 6.998258 CAGGCTTCTGTCAAAAATAAACTG 57.002 37.500 0.00 0.00 33.96 3.16
863 864 0.529773 TTCAGTGACACACGACAGGC 60.530 55.000 8.59 0.00 39.64 4.85
872 873 8.116753 CGTAAGGATGATAAATTTCAGTGACAC 58.883 37.037 0.00 0.00 0.00 3.67
878 879 7.337718 CGTCACGTAAGGATGATAAATTTCAG 58.662 38.462 0.00 0.00 46.39 3.02
881 882 6.036735 CACCGTCACGTAAGGATGATAAATTT 59.963 38.462 9.68 0.00 46.39 1.82
910 911 1.949525 GAACTCTTTGGTGCAGAGCAA 59.050 47.619 0.10 0.00 41.47 3.91
911 912 1.597742 GAACTCTTTGGTGCAGAGCA 58.402 50.000 0.10 0.00 41.49 4.26
912 913 0.877743 GGAACTCTTTGGTGCAGAGC 59.122 55.000 0.10 0.00 41.49 4.09
913 914 2.260844 TGGAACTCTTTGGTGCAGAG 57.739 50.000 0.00 0.00 43.16 3.35
914 915 2.297701 GTTGGAACTCTTTGGTGCAGA 58.702 47.619 0.00 0.00 34.49 4.26
915 916 1.002468 CGTTGGAACTCTTTGGTGCAG 60.002 52.381 0.00 0.00 34.49 4.41
916 917 1.021202 CGTTGGAACTCTTTGGTGCA 58.979 50.000 0.00 0.00 0.00 4.57
917 918 0.317854 GCGTTGGAACTCTTTGGTGC 60.318 55.000 0.00 0.00 0.00 5.01
918 919 0.041312 CGCGTTGGAACTCTTTGGTG 60.041 55.000 0.00 0.00 0.00 4.17
919 920 1.164041 CCGCGTTGGAACTCTTTGGT 61.164 55.000 4.92 0.00 42.00 3.67
920 921 1.574428 CCGCGTTGGAACTCTTTGG 59.426 57.895 4.92 0.00 42.00 3.28
921 922 0.882927 TCCCGCGTTGGAACTCTTTG 60.883 55.000 4.92 0.00 42.00 2.77
922 923 0.179040 TTCCCGCGTTGGAACTCTTT 60.179 50.000 12.14 0.00 39.48 2.52
923 924 0.602905 CTTCCCGCGTTGGAACTCTT 60.603 55.000 12.14 0.00 39.48 2.85
924 925 1.004918 CTTCCCGCGTTGGAACTCT 60.005 57.895 12.14 0.00 39.48 3.24
925 926 2.677979 GCTTCCCGCGTTGGAACTC 61.678 63.158 12.14 4.77 39.48 3.01
926 927 2.668550 GCTTCCCGCGTTGGAACT 60.669 61.111 12.14 0.00 39.48 3.01
927 928 2.975799 TGCTTCCCGCGTTGGAAC 60.976 61.111 12.14 10.06 39.48 3.62
928 929 2.975799 GTGCTTCCCGCGTTGGAA 60.976 61.111 14.87 14.87 42.09 3.53
929 930 3.758973 TTGTGCTTCCCGCGTTGGA 62.759 57.895 4.92 1.85 43.27 3.53
930 931 3.283684 TTGTGCTTCCCGCGTTGG 61.284 61.111 4.92 0.00 43.27 3.77
931 932 2.051345 GTTGTGCTTCCCGCGTTG 60.051 61.111 4.92 0.00 43.27 4.10
932 933 3.284449 GGTTGTGCTTCCCGCGTT 61.284 61.111 4.92 0.00 43.27 4.84
933 934 4.555709 TGGTTGTGCTTCCCGCGT 62.556 61.111 4.92 0.00 43.27 6.01
934 935 4.025401 GTGGTTGTGCTTCCCGCG 62.025 66.667 0.00 0.00 43.27 6.46
935 936 3.670377 GGTGGTTGTGCTTCCCGC 61.670 66.667 0.00 0.00 39.77 6.13
936 937 3.353836 CGGTGGTTGTGCTTCCCG 61.354 66.667 0.00 0.00 0.00 5.14
937 938 3.670377 GCGGTGGTTGTGCTTCCC 61.670 66.667 0.00 0.00 0.00 3.97
938 939 2.904866 TGCGGTGGTTGTGCTTCC 60.905 61.111 0.00 0.00 0.00 3.46
939 940 2.186826 AGTGCGGTGGTTGTGCTTC 61.187 57.895 0.00 0.00 0.00 3.86
940 941 2.124320 AGTGCGGTGGTTGTGCTT 60.124 55.556 0.00 0.00 0.00 3.91
941 942 2.884997 TTCAGTGCGGTGGTTGTGCT 62.885 55.000 0.00 0.00 0.00 4.40
942 943 2.477176 TTCAGTGCGGTGGTTGTGC 61.477 57.895 0.00 0.00 0.00 4.57
943 944 1.095228 AGTTCAGTGCGGTGGTTGTG 61.095 55.000 0.00 0.00 0.00 3.33
944 945 0.393808 AAGTTCAGTGCGGTGGTTGT 60.394 50.000 0.00 0.00 0.00 3.32
945 946 0.738389 AAAGTTCAGTGCGGTGGTTG 59.262 50.000 0.00 0.00 0.00 3.77
946 947 0.738389 CAAAGTTCAGTGCGGTGGTT 59.262 50.000 0.00 0.00 0.00 3.67
950 951 1.944709 GGTAACAAAGTTCAGTGCGGT 59.055 47.619 0.00 0.00 0.00 5.68
957 958 0.584396 CGCTGCGGTAACAAAGTTCA 59.416 50.000 15.40 0.00 0.00 3.18
993 994 2.202610 GGATTTTGAAGCCGCGGC 60.203 61.111 42.34 42.34 42.33 6.53
996 997 1.373590 TAGCGGGATTTTGAAGCCGC 61.374 55.000 0.00 0.00 38.00 6.53
1007 1008 4.541648 ACCGGAGCCTAGCGGGAT 62.542 66.667 9.46 0.00 37.23 3.85
1027 1028 1.162698 CCTCACCAGCAATGTCACTG 58.837 55.000 0.00 0.00 0.00 3.66
1028 1029 0.607489 GCCTCACCAGCAATGTCACT 60.607 55.000 0.00 0.00 0.00 3.41
1032 1033 0.682209 GGATGCCTCACCAGCAATGT 60.682 55.000 0.00 0.00 44.83 2.71
1035 1036 0.394762 GATGGATGCCTCACCAGCAA 60.395 55.000 0.00 0.00 44.83 3.91
1047 1048 4.774124 AGGTTACTGATGTGTGATGGATG 58.226 43.478 0.00 0.00 0.00 3.51
1084 1085 3.387947 GATCGTGGACACCGGGGT 61.388 66.667 10.56 10.56 0.00 4.95
1085 1086 3.075005 AGATCGTGGACACCGGGG 61.075 66.667 0.00 0.00 0.00 5.73
1086 1087 2.494918 GAGATCGTGGACACCGGG 59.505 66.667 6.32 0.00 0.00 5.73
1087 1088 2.494918 GGAGATCGTGGACACCGG 59.505 66.667 0.00 0.00 0.00 5.28
1391 1410 1.888436 CGGGTGGAGCAGAGCAAGTA 61.888 60.000 0.00 0.00 0.00 2.24
1545 1663 1.830408 CCGTCTCCTAGCTCCCTGG 60.830 68.421 0.00 0.00 0.00 4.45
1696 1814 2.483013 CGACCTGAAAGTGTTCACCAGA 60.483 50.000 8.49 0.00 38.88 3.86
1981 2111 2.116772 ACGACCCAGAGGAACCGA 59.883 61.111 0.00 0.00 36.73 4.69
2014 2144 2.362503 AGATCTGGGACGCCGTCA 60.363 61.111 20.08 0.00 33.68 4.35
2575 2745 6.634805 TGACCACAAAACTAAAAATCAGCAA 58.365 32.000 0.00 0.00 0.00 3.91
2602 2772 3.573967 ACAATTCAACGGCCAGAAAATCT 59.426 39.130 2.24 0.00 0.00 2.40
2660 2831 1.876799 CCAAACAGCACAATACGACCA 59.123 47.619 0.00 0.00 0.00 4.02
2662 2833 4.403453 GAATCCAAACAGCACAATACGAC 58.597 43.478 0.00 0.00 0.00 4.34
2664 2835 3.124466 TCGAATCCAAACAGCACAATACG 59.876 43.478 0.00 0.00 0.00 3.06
2665 2836 4.154195 AGTCGAATCCAAACAGCACAATAC 59.846 41.667 0.00 0.00 0.00 1.89
2667 2838 3.058016 CAGTCGAATCCAAACAGCACAAT 60.058 43.478 0.00 0.00 0.00 2.71
2668 2839 2.290367 CAGTCGAATCCAAACAGCACAA 59.710 45.455 0.00 0.00 0.00 3.33
2671 2842 2.143122 GTCAGTCGAATCCAAACAGCA 58.857 47.619 0.00 0.00 0.00 4.41
2672 2843 2.143122 TGTCAGTCGAATCCAAACAGC 58.857 47.619 0.00 0.00 0.00 4.40
2674 2845 4.271696 AGATGTCAGTCGAATCCAAACA 57.728 40.909 0.00 0.00 0.00 2.83
2675 2846 6.910536 AATAGATGTCAGTCGAATCCAAAC 57.089 37.500 0.00 0.00 0.00 2.93
2676 2847 7.148255 CCAAAATAGATGTCAGTCGAATCCAAA 60.148 37.037 0.00 0.00 0.00 3.28
2677 2848 6.316140 CCAAAATAGATGTCAGTCGAATCCAA 59.684 38.462 0.00 0.00 0.00 3.53
2679 2850 5.237344 CCCAAAATAGATGTCAGTCGAATCC 59.763 44.000 0.00 0.00 0.00 3.01
2681 2852 5.745227 ACCCAAAATAGATGTCAGTCGAAT 58.255 37.500 0.00 0.00 0.00 3.34
2682 2853 5.160607 ACCCAAAATAGATGTCAGTCGAA 57.839 39.130 0.00 0.00 0.00 3.71
2683 2854 4.221924 TGACCCAAAATAGATGTCAGTCGA 59.778 41.667 0.00 0.00 32.56 4.20
2684 2855 4.503910 TGACCCAAAATAGATGTCAGTCG 58.496 43.478 0.00 0.00 32.56 4.18
2688 2859 6.867519 TCTACTGACCCAAAATAGATGTCA 57.132 37.500 0.00 0.00 34.95 3.58
2689 2860 7.731054 AGATCTACTGACCCAAAATAGATGTC 58.269 38.462 0.00 0.00 33.70 3.06
2690 2861 7.345653 TGAGATCTACTGACCCAAAATAGATGT 59.654 37.037 0.00 0.00 33.70 3.06
2691 2862 7.730084 TGAGATCTACTGACCCAAAATAGATG 58.270 38.462 0.00 0.00 33.70 2.90
2692 2863 7.921041 TGAGATCTACTGACCCAAAATAGAT 57.079 36.000 0.00 0.00 35.73 1.98
2693 2864 7.921041 ATGAGATCTACTGACCCAAAATAGA 57.079 36.000 0.00 0.00 0.00 1.98
2694 2865 8.428063 AGAATGAGATCTACTGACCCAAAATAG 58.572 37.037 0.00 0.00 0.00 1.73
2695 2866 8.324191 AGAATGAGATCTACTGACCCAAAATA 57.676 34.615 0.00 0.00 0.00 1.40
2696 2867 7.205515 AGAATGAGATCTACTGACCCAAAAT 57.794 36.000 0.00 0.00 0.00 1.82
2697 2868 6.627087 AGAATGAGATCTACTGACCCAAAA 57.373 37.500 0.00 0.00 0.00 2.44
2715 2886 4.021719 ACACCAAAATCCAGCTCAAGAATG 60.022 41.667 0.00 0.00 0.00 2.67
2716 2887 4.021719 CACACCAAAATCCAGCTCAAGAAT 60.022 41.667 0.00 0.00 0.00 2.40
2728 2899 6.215845 AGAAAAGTATGCACACACCAAAATC 58.784 36.000 0.00 0.00 0.00 2.17
2745 2916 1.203100 AGCAAGCCCATGGAGAAAAGT 60.203 47.619 15.22 0.00 0.00 2.66
2828 2999 4.635765 CACACTCAACATCCGGAAATACAT 59.364 41.667 9.01 0.00 0.00 2.29
2872 3043 4.454678 AGGAATCCGACGTACATGTAGTA 58.545 43.478 5.62 0.00 0.00 1.82
2873 3044 3.285484 AGGAATCCGACGTACATGTAGT 58.715 45.455 5.62 6.74 0.00 2.73
2874 3045 3.984508 AGGAATCCGACGTACATGTAG 57.015 47.619 5.62 3.44 0.00 2.74
2875 3046 4.440525 GGAAAGGAATCCGACGTACATGTA 60.441 45.833 0.08 0.08 0.00 2.29
2876 3047 3.518590 GAAAGGAATCCGACGTACATGT 58.481 45.455 2.69 2.69 0.00 3.21
2877 3048 2.864343 GGAAAGGAATCCGACGTACATG 59.136 50.000 0.00 0.00 0.00 3.21
2878 3049 2.498481 TGGAAAGGAATCCGACGTACAT 59.502 45.455 0.00 0.00 42.76 2.29
2879 3050 1.894466 TGGAAAGGAATCCGACGTACA 59.106 47.619 0.00 0.00 42.76 2.90
2880 3051 2.660189 TGGAAAGGAATCCGACGTAC 57.340 50.000 0.00 0.00 42.76 3.67
2881 3052 2.963432 GTTGGAAAGGAATCCGACGTA 58.037 47.619 0.00 0.00 42.53 3.57
2882 3053 1.804601 GTTGGAAAGGAATCCGACGT 58.195 50.000 0.00 0.00 42.53 4.34
2885 3056 1.982226 TGAGGTTGGAAAGGAATCCGA 59.018 47.619 0.00 0.00 42.76 4.55
2886 3057 2.084546 GTGAGGTTGGAAAGGAATCCG 58.915 52.381 0.00 0.00 42.76 4.18
2887 3058 2.084546 CGTGAGGTTGGAAAGGAATCC 58.915 52.381 0.00 0.00 40.10 3.01
2888 3059 1.468914 GCGTGAGGTTGGAAAGGAATC 59.531 52.381 0.00 0.00 0.00 2.52
2889 3060 1.202879 TGCGTGAGGTTGGAAAGGAAT 60.203 47.619 0.00 0.00 0.00 3.01
2890 3061 0.181587 TGCGTGAGGTTGGAAAGGAA 59.818 50.000 0.00 0.00 0.00 3.36
2891 3062 0.534203 GTGCGTGAGGTTGGAAAGGA 60.534 55.000 0.00 0.00 0.00 3.36
2892 3063 1.841663 CGTGCGTGAGGTTGGAAAGG 61.842 60.000 0.00 0.00 0.00 3.11
2900 3071 0.321919 TCTAGGTACGTGCGTGAGGT 60.322 55.000 9.18 0.00 0.00 3.85
2955 3129 2.105993 AGAGGCACGAACCCTAACTTTT 59.894 45.455 0.00 0.00 31.41 2.27
3242 3416 4.219507 ACGATGAGATCCGAGCAAATCTAT 59.780 41.667 0.00 0.00 32.43 1.98
3244 3418 2.363680 ACGATGAGATCCGAGCAAATCT 59.636 45.455 0.00 0.00 34.96 2.40
3342 3516 1.570857 CCATAGGACCAGCACCCCAA 61.571 60.000 0.00 0.00 0.00 4.12
3385 3559 6.424207 GGGCATAACTTATTGTAGTAGACAGC 59.576 42.308 0.00 0.00 39.88 4.40
4265 4538 8.421002 TGGAAGAATGAAACCCTTTAAGAAAAG 58.579 33.333 0.00 0.00 41.57 2.27
4599 4881 9.196139 TGATTCCCTTTAAGAAGAAACAAAAGA 57.804 29.630 0.00 0.00 34.71 2.52
4600 4882 9.987272 ATGATTCCCTTTAAGAAGAAACAAAAG 57.013 29.630 10.00 0.00 34.71 2.27
4607 4889 9.822727 AGGTAAAATGATTCCCTTTAAGAAGAA 57.177 29.630 0.00 0.00 34.71 2.52
4608 4890 9.822727 AAGGTAAAATGATTCCCTTTAAGAAGA 57.177 29.630 0.00 0.00 34.71 2.87
4615 4897 8.531982 GCTTTCTAAGGTAAAATGATTCCCTTT 58.468 33.333 8.43 0.00 36.86 3.11
4616 4898 7.895962 AGCTTTCTAAGGTAAAATGATTCCCTT 59.104 33.333 8.26 8.26 37.49 3.95
4617 4899 7.414266 AGCTTTCTAAGGTAAAATGATTCCCT 58.586 34.615 0.00 0.00 37.49 4.20
4618 4900 7.646548 AGCTTTCTAAGGTAAAATGATTCCC 57.353 36.000 0.00 0.00 37.49 3.97
4619 4901 8.739972 TGAAGCTTTCTAAGGTAAAATGATTCC 58.260 33.333 0.00 0.00 38.49 3.01
4628 4910 8.691797 ACAAAACAATGAAGCTTTCTAAGGTAA 58.308 29.630 0.00 0.00 38.49 2.85
4630 4912 7.112452 ACAAAACAATGAAGCTTTCTAAGGT 57.888 32.000 0.00 0.00 41.85 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.